QUERY CHROM POS TYPE REF ALT EVIDENCE FTYPE STRAND NT_POS AA_POS EFFECT LOCUS_TAG GENE PRODUCT ERR1359412.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359412.fasta NC_007297 53195 del TA T T:19 TA:0 ERR1359412.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359412.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1359412.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359412.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359412.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359412.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359412.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359412.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359412.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359412.fasta NC_007297 310333 snp G A A:15 G:0 ERR1359412.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359412.fasta NC_007297 343279 del TA T T:19 TA:0 ERR1359412.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359412.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359412.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359412.fasta NC_007297 552045 snp T C C:20 T:0 CDS - 177/888 59/295 synonymous_variant c.177A>G p.Leu59Leu M5005_RS10050 helix-turn-helix domain-containing protein ERR1359412.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359412.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359412.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359412.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359412.fasta NC_007297 608842 snp C T T:20 C:0 CDS + 84/1206 28/401 synonymous_variant c.84C>T p.Arg28Arg M5005_RS03115 ABC transporter ATP-binding protein ERR1359412.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359412.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359412.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359412.fasta NC_007297 673198 snp A G G:20 A:0 ERR1359412.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359412.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359412.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359412.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359412.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359412.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359412.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359412.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359412.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359412.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359412.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359412.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359412.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359412.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359412.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359412.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359412.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359412.fasta NC_007297 1064478 snp C T T:12 C:0 CDS + 1307/1345 436/447 missense_variant c.1307C>T p.Thr436Ile M5005_RS05400 IS3 family transposase ERR1359412.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359412.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359412.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359412.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359412.fasta NC_007297 1191744 snp G A A:20 G:0 CDS - 985/1410 329/469 missense_variant c.985C>T p.His329Tyr M5005_RS06105 cryptochrome/photolyase family protein ERR1359412.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359412.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359412.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359412.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359412.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359412.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359412.fasta NC_007297 1262625 snp G A A:20 G:0 CDS - 659/1485 220/494 missense_variant c.659C>T p.Thr220Ile M5005_RS06440 response regulator transcription factor ERR1359412.fasta NC_007297 1294671 del CT C C:19 CT:0 ERR1359412.fasta NC_007297 1369715 snp C T T:20 C:0 CDS - 172/978 58/325 missense_variant c.172G>A p.Glu58Lys M5005_RS06925 lacD tagatose-bisphosphate aldolase ERR1359412.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359412.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359412.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359412.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359412.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359412.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359412.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359412.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359412.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359412.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359412.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359412.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359412.fasta NC_007297 1681235 snp T C C:20 T:0 CDS - 713/942 238/313 missense_variant c.713A>G p.Asp238Gly M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359412.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359412.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:10 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359412.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359412.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359412.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359412.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359412.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359412.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein ERR1359530.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359530.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359530.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1359530.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359530.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359530.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359530.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359530.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359530.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359530.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359530.fasta NC_007297 298096 snp G A A:20 G:0 CDS + 608/1311 203/436 missense_variant c.608G>A p.Ser203Asn M5005_RS01605 der ribosome biogenesis GTPase Der ERR1359530.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359530.fasta NC_007297 343279 del TA T T:19 TA:0 ERR1359530.fasta NC_007297 360083 snp G A A:20 G:0 ERR1359530.fasta NC_007297 414594 snp T C C:20 T:0 CDS - 657/1086 219/361 synonymous_variant c.657A>G p.Leu219Leu M5005_RS02240 aminopeptidase P family protein ERR1359530.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359530.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359530.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:16 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359530.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359530.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359530.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359530.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359530.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359530.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359530.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359530.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359530.fasta NC_007297 712345 snp C G G:20 C:0 CDS + 1045/1269 349/422 missense_variant c.1045C>G p.Leu349Val M5005_RS03605 dihydroorotase ERR1359530.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359530.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359530.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359530.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359530.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359530.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359530.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359530.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359530.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359530.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359530.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359530.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359530.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359530.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359530.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359530.fasta NC_007297 1037863 snp T C C:20 T:0 CDS - 252/2136 84/711 synonymous_variant c.252A>G p.Gly84Gly M5005_RS05280 amyA alpha-amylase AmyA ERR1359530.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359530.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359530.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359530.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359530.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359530.fasta NC_007297 1150769 snp C A A:20 C:0 CDS - 1691/1869 564/622 missense_variant c.1691G>T p.Gly564Val M5005_RS05820 gp58-like family protein ERR1359530.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359530.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359530.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359530.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359530.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359530.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359530.fasta NC_007297 1294671 del CT C C:20 CT:0 ERR1359530.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359530.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359530.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359530.fasta NC_007297 1418157 snp A G G:20 A:0 CDS - 211/1923 71/640 missense_variant c.211T>C p.Phe71Leu M5005_RS07190 DNA polymerase ERR1359530.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359530.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359530.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359530.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359530.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359530.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359530.fasta NC_007297 1611424 snp T A A:20 T:0 ERR1359530.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359530.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359530.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359530.fasta NC_007297 1649069 del CTCACCTTGTGGGCCTGCTGGGCCTTGGGCGCCCGTTTCACCTTTT C C:12 CTCACCTTGTGGGCCTGCTGGGCCTTGGGCGCCCGTTTCACCTTTT:0 CDS - 698/1047 218/348 disruptive_inframe_deletion c.654_698delAAAAGGTGAAACGGGCGCCCAAGGCCCAGCAGGCCCACAAGGTGA p.Lys219_Glu233del M5005_RS08330 slc1 adhesin Scl1 ERR1359530.fasta NC_007297 1680640 snp G A A:20 G:0 ERR1359530.fasta NC_007297 1681273 del TCCATCAAAG T T:12 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359530.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:16 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359530.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359530.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359530.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359530.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359530.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359530.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169983.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169983.fasta NC_007297 36169 snp C A A:20 C:0 CDS + 158/705 53/234 stop_gained c.158C>A p.Ser53* M5005_RS00265 purC phosphoribosylaminoimidazolesuccinocarboxamide synthase SRR21169983.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169983.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169983.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169983.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169983.fasta NC_007297 116281 snp A G G:20 A:0 CDS - 836/1494 279/497 missense_variant c.836T>C p.Ile279Thr M5005_RS00740 rofA transcriptional regulator RofA SRR21169983.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169983.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169983.fasta NC_007297 291555 snp A T T:20 A:0 SRR21169983.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169983.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169983.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169983.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169983.fasta NC_007297 347948 snp A C C:20 A:0 CDS + 3204/4944 1068/1647 synonymous_variant c.3204A>C p.Ile1068Ile M5005_RS01880 scpC CXC chemokine-degrading serine protease SpyCEP SRR21169983.fasta NC_007297 438755 snp T G G:20 T:0 CDS + 621/837 207/278 stop_gained c.621T>G p.Tyr207* M5005_RS02335 sugar phosphate isomerase/epimerase family protein SRR21169983.fasta NC_007297 457137 snp T A A:20 T:0 CDS + 813/900 271/299 stop_gained c.813T>A p.Tyr271* M5005_RS10035 histidyl-tRNA synthetase SRR21169983.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169983.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169983.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169983.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169983.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169983.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169983.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169983.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169983.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169983.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169983.fasta NC_007297 686815 snp A G G:20 A:0 CDS + 390/1008 130/335 synonymous_variant c.390A>G p.Pro130Pro M5005_RS03480 phosphomevalonate kinase SRR21169983.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169983.fasta NC_007297 695440 snp G A A:20 G:0 CDS + 426/744 142/247 synonymous_variant c.426G>A p.Glu142Glu M5005_RS03525 hypothetical protein SRR21169983.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169983.fasta NC_007297 739706 snp G A A:20 G:0 SRR21169983.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169983.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169983.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169983.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169983.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169983.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169983.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169983.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169983.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169983.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169983.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169983.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169983.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169983.fasta NC_007297 960815 ins G GT GT:20 G:0 CDS - 154/189 52/62 frameshift_variant c.154dupA p.Thr52fs M5005_RS04845 DUF2273 domain-containing protein SRR21169983.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169983.fasta NC_007297 994808 snp G A A:20 G:0 CDS - 1446/1485 482/494 synonymous_variant c.1446C>T p.Asn482Asn M5005_RS05010 distal tail protein Dit SRR21169983.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169983.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169983.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169983.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169983.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169983.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169983.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169983.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169983.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169983.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169983.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169983.fasta NC_007297 1256647 snp C T T:20 C:0 CDS - 466/756 156/251 missense_variant c.466G>A p.Val156Ile M5005_RS06425 class I SAM-dependent methyltransferase SRR21169983.fasta NC_007297 1294671 del CT C C:20 CT:0 SRR21169983.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169983.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169983.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169983.fasta NC_007297 1416434 snp G A A:20 G:0 CDS - 7/2385 3/794 stop_gained c.7C>T p.Gln3* M5005_RS07185 phage/plasmid primase, P4 family SRR21169983.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169983.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169983.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169983.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169983.fasta NC_007297 1500387 snp G A A:20 G:0 CDS - 1098/2988 366/995 synonymous_variant c.1098C>T p.Asp366Asp M5005_RS07620 endo-beta-N-acetylglucosaminidase EndoS SRR21169983.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169983.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169983.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169983.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169983.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169983.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169983.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169983.fasta NC_007297 1718925 snp G T T:20 G:0 CDS + 663/1497 221/498 missense_variant c.663G>T p.Lys221Asn M5005_RS08645 C69 family dipeptidase SRR21169983.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169983.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169983.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169983.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169983.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein ERR1359370.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359370.fasta NC_007297 36169 snp C A A:20 C:0 CDS + 158/705 53/234 stop_gained c.158C>A p.Ser53* M5005_RS00265 purC phosphoribosylaminoimidazolesuccinocarboxamide synthase ERR1359370.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359370.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359370.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359370.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359370.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359370.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359370.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359370.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359370.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359370.fasta NC_007297 343279 del TA T T:18 TA:0 ERR1359370.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359370.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359370.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359370.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359370.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359370.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359370.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359370.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359370.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359370.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359370.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359370.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359370.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359370.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359370.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359370.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359370.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359370.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359370.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359370.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359370.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359370.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359370.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359370.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359370.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359370.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359370.fasta NC_007297 1007547 snp A G G:20 A:0 ERR1359370.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359370.fasta NC_007297 1064592 snp C T T:10 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359370.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359370.fasta NC_007297 1091710 snp C T T:20 C:0 CDS + 224/1086 75/361 missense_variant c.224C>T p.Thr75Ile M5005_RS05525 DEAD/DEAH box helicase ERR1359370.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359370.fasta NC_007297 1140419 snp T C C:20 T:0 ERR1359370.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359370.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359370.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359370.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359370.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359370.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359370.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359370.fasta NC_007297 1294671 del CT C C:18 CT:0 ERR1359370.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359370.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359370.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359370.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359370.fasta NC_007297 1458146 snp G A A:20 G:0 CDS - 69/744 23/247 synonymous_variant c.69C>T p.Tyr23Tyr M5005_RS07440 M15 family metallopeptidase ERR1359370.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359370.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359370.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359370.fasta NC_007297 1508024 snp G T T:20 G:0 CDS - 361/462 121/153 missense_variant c.361C>A p.Arg121Ser M5005_RS07655 deoxycytidylate deaminase ERR1359370.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359370.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359370.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359370.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359370.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359370.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359370.fasta NC_007297 1683377 snp C T T:20 C:0 CDS - 214/1455 72/484 missense_variant c.214G>A p.Asp72Asn M5005_RS08475 emm M protein ERR1359370.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359370.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359370.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359370.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359370.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein ERR1359599.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359599.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359599.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1359599.fasta NC_007297 103881 snp C T T:20 C:0 CDS + 929/1035 310/344 missense_variant c.929C>T p.Thr310Ile M5005_RS00650 comGB competence type IV pilus assembly protein ComGB ERR1359599.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359599.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359599.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359599.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359599.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359599.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359599.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359599.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359599.fasta NC_007297 343279 del TA T T:19 TA:0 ERR1359599.fasta NC_007297 363647 ins A AT AT:18 A:0 ERR1359599.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359599.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359599.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359599.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359599.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359599.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359599.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359599.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359599.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359599.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359599.fasta NC_007297 686095 snp G A A:20 G:0 CDS + 607/945 203/314 missense_variant c.607G>A p.Val203Ile M5005_RS03475 mvaD diphosphomevalonate decarboxylase ERR1359599.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359599.fasta NC_007297 709281 snp A G G:20 A:0 CDS + 441/864 147/287 synonymous_variant c.441A>G p.Gly147Gly M5005_RS03590 transporter substrate-binding domain-containing protein ERR1359599.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359599.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359599.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359599.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359599.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359599.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359599.fasta NC_007297 791857 snp C T T:20 C:0 CDS + 306/506 102/167 synonymous_variant c.306C>T p.Phe102Phe M5005_RS03975 YkgJ family cysteine cluster protein ERR1359599.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359599.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359599.fasta NC_007297 908381 del TTAACAGGATAGC T T:17 TTAACAGGATAGC:0 CDS - 348/1224 113/407 conservative_inframe_deletion c.337_348delGCTATCCTGTTA p.Ala113_Leu116del M5005_RS04585 aminoacyltransferase ERR1359599.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359599.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359599.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359599.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359599.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359599.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359599.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359599.fasta NC_007297 1003874 snp C T T:20 C:0 CDS - 141/909 47/302 synonymous_variant c.141G>A p.Gly47Gly M5005_RS05075 minor capsid protein ERR1359599.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359599.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359599.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359599.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359599.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359599.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359599.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359599.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359599.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359599.fasta NC_007297 1238540 snp G A A:20 G:0 CDS - 345/624 115/207 synonymous_variant c.345C>T p.Asp115Asp M5005_RS06330 TlpA disulfide reductase family protein ERR1359599.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359599.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359599.fasta NC_007297 1294671 del CT C C:20 CT:0 ERR1359599.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359599.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359599.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359599.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359599.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359599.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359599.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359599.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359599.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359599.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359599.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359599.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359599.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359599.fasta NC_007297 1681697 del CTAGACCAGCCATATT C C:16 CTAGACCAGCCATATT:0 CDS - 250/942 79/313 disruptive_inframe_deletion c.236_250delAATATGGCTGGTCTA p.Lys79_Ser83del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359599.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359599.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359599.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359599.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359599.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359599.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169877.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169877.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169877.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169877.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169877.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169877.fasta NC_007297 126007 snp C T T:20 C:0 CDS - 661/666 221/221 missense_variant c.661G>A p.Glu221Lys M5005_RS00790 hypothetical protein SRR21169877.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169877.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169877.fasta NC_007297 253420 snp A G G:20 A:0 CDS + 354/1419 118/472 synonymous_variant c.354A>G p.Ala118Ala M5005_RS01385 sufB Fe-S cluster assembly protein SufB SRR21169877.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169877.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169877.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169877.fasta NC_007297 343279 del TA T T:18 TA:0 SRR21169877.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169877.fasta NC_007297 528231 snp A G G:20 A:0 SRR21169877.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169877.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169877.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169877.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169877.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169877.fasta NC_007297 595011 snp G A A:20 G:0 CDS + 2486/3216 829/1071 missense_variant c.2486G>A p.Ser829Asn M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169877.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169877.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169877.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169877.fasta NC_007297 634161 snp C A A:20 C:0 CDS + 630/1143 210/380 synonymous_variant c.630C>A p.Gly210Gly M5005_RS03230 cysteine desulfurase family protein SRR21169877.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169877.fasta NC_007297 681603 snp A G G:20 A:0 SRR21169877.fasta NC_007297 684809 snp A G G:20 A:0 CDS + 181/879 61/292 missense_variant c.181A>G p.Ile61Val M5005_RS03470 mvk mevalonate kinase SRR21169877.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169877.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169877.fasta NC_007297 741899 snp C A A:20 C:0 CDS + 375/1248 125/415 synonymous_variant c.375C>A p.Gly125Gly M5005_RS03760 tetratricopeptide repeat protein SRR21169877.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169877.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169877.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169877.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169877.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169877.fasta NC_007297 817739 snp C T T:20 C:0 CDS + 698/801 233/266 missense_variant c.698C>T p.Ala233Val M5005_RS04130 folP dihydropteroate synthase SRR21169877.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169877.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169877.fasta NC_007297 854429 snp C T T:20 C:0 CDS + 145/840 49/279 missense_variant c.145C>T p.Pro49Ser M5005_RS04325 prmC peptide chain release factor N(5)-glutamine methyltransferase SRR21169877.fasta NC_007297 899397 snp G C C:20 G:0 CDS - 834/1071 278/356 synonymous_variant c.834C>G p.Gly278Gly M5005_RS04550 xerS tyrosine recombinase XerS SRR21169877.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169877.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169877.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169877.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169877.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169877.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169877.fasta NC_007297 969253 ins C CA CA:19 C:0 SRR21169877.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169877.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169877.fasta NC_007297 1047553 snp A T T:20 A:0 SRR21169877.fasta NC_007297 1064592 snp C T T:17 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169877.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169877.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169877.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169877.fasta NC_007297 1156393 snp T C C:20 T:0 CDS - 366/594 122/197 synonymous_variant c.366A>G p.Glu122Glu M5005_RS05845 phage tail tube protein SRR21169877.fasta NC_007297 1162327 snp G A A:20 G:0 CDS - 1153/1494 385/497 missense_variant c.1153C>T p.His385Tyr M5005_RS05905 hypothetical protein SRR21169877.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169877.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169877.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169877.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169877.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169877.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169877.fasta NC_007297 1263296 snp C T T:20 C:0 CDS - 1712/1725 571/574 missense_variant c.1712G>A p.Arg571Lys M5005_RS06445 sensor histidine kinase SRR21169877.fasta NC_007297 1277660 snp C T T:20 C:0 CDS + 971/2706 324/901 missense_variant c.971C>T p.Ala324Val M5005_RS06495 alpha-mannosidase SRR21169877.fasta NC_007297 1294671 del CT C C:18 CT:0 SRR21169877.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169877.fasta NC_007297 1391003 snp C A A:20 C:0 CDS - 583/1908 195/635 missense_variant c.583G>T p.Ala195Ser M5005_RS07050 gp58-like family protein SRR21169877.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169877.fasta NC_007297 1404939 complex TTTA ATTT ATTT:20 TTTA:0 SRR21169877.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169877.fasta NC_007297 1408878 ins C CA CA:19 C:0 CDS - 780/1278 260/425 frameshift_variant c.780dupT p.Gly261fs M5005_RS07145 PBSX family phage terminase large subunit SRR21169877.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169877.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169877.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169877.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169877.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169877.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169877.fasta NC_007297 1570171 snp C T T:20 C:0 CDS - 244/1284 82/427 missense_variant c.244G>A p.Glu82Lys M5005_RS07965 tig trigger factor SRR21169877.fasta NC_007297 1589610 snp C A A:20 C:0 CDS - 935/1563 312/520 missense_variant c.935G>T p.Arg312Ile M5005_RS08060 ATP-binding protein SRR21169877.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169877.fasta NC_007297 1627308 snp T C C:20 T:0 CDS - 2603/4398 868/1465 missense_variant c.2603A>G p.Lys868Arg M5005_RS08260 PolC-type DNA polymerase III SRR21169877.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169877.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169877.fasta NC_007297 1681273 del TCCATCAAAG T T:15 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169877.fasta NC_007297 1699284 snp G A A:20 G:0 CDS + 163/843 55/280 missense_variant c.163G>A p.Val55Ile M5005_RS08550 ropB quorum-sensing system transcriptional regulator RopB/Rgg1 SRR21169877.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169877.fasta NC_007297 1709601 snp G T T:20 G:0 CDS - 66/981 22/326 missense_variant c.66C>A p.Ser22Arg M5005_RS08595 sugar-binding transcriptional regulator SRR21169877.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169877.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169877.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169877.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR6840212.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR6840212.fasta NC_007297 53195 del TA T T:18 TA:0 SRR6840212.fasta NC_007297 60863 snp T C C:20 T:0 CDS + 2325/2643 775/880 synonymous_variant c.2325T>C p.Tyr775Tyr M5005_RS00350 adhE bifunctional acetaldehyde-CoA/alcohol dehydrogenase SRR6840212.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR6840212.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha SRR6840212.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR6840212.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR6840212.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR6840212.fasta NC_007297 167489 snp C T T:20 C:0 SRR6840212.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR6840212.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR6840212.fasta NC_007297 293229 ins C CT CT:18 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR6840212.fasta NC_007297 310333 snp G A A:14 G:0 SRR6840212.fasta NC_007297 324469 snp C T T:20 C:0 CDS + 1299/1335 433/444 synonymous_variant c.1299C>T p.Ile433Ile M5005_RS01755 hemolysin family protein SRR6840212.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR6840212.fasta NC_007297 343279 del TA T T:20 TA:0 SRR6840212.fasta NC_007297 366205 snp C T T:20 C:0 SRR6840212.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR6840212.fasta NC_007297 528360 snp A T T:20 A:0 SRR6840212.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:16 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR6840212.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR6840212.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR6840212.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR6840212.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR6840212.fasta NC_007297 608842 snp C T T:20 C:0 CDS + 84/1206 28/401 synonymous_variant c.84C>T p.Arg28Arg M5005_RS03115 ABC transporter ATP-binding protein SRR6840212.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR6840212.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR6840212.fasta NC_007297 645318 snp C T T:20 C:0 CDS + 1073/1083 358/360 missense_variant c.1073C>T p.Thr358Met M5005_RS03290 carbamoyl phosphate synthase small subunit SRR6840212.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR6840212.fasta NC_007297 669274 snp C A A:20 C:0 CDS + 1928/1947 643/648 missense_variant c.1928C>A p.Ala643Asp M5005_RS03385 PTS fructose transporter subunit IIABC SRR6840212.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR6840212.fasta NC_007297 711067 snp C T T:20 C:0 CDS + 552/654 184/217 synonymous_variant c.552C>T p.Ser184Ser M5005_RS03600 uracil-DNA glycosylase SRR6840212.fasta NC_007297 717680 snp G A A:20 G:0 CDS + 2238/2460 746/819 synonymous_variant c.2238G>A p.Leu746Leu M5005_RS03620 parC DNA topoisomerase IV subunit A SRR6840212.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR6840212.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR6840212.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR6840212.fasta NC_007297 782255 snp A G G:20 A:0 SRR6840212.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR6840212.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR6840212.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR6840212.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR6840212.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR6840212.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR6840212.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR6840212.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR6840212.fasta NC_007297 957886 snp T C C:20 T:0 SRR6840212.fasta NC_007297 959346 snp C T T:20 C:0 SRR6840212.fasta NC_007297 983438 snp G C C:20 G:0 SRR6840212.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR6840212.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR6840212.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR6840212.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR6840212.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR6840212.fasta NC_007297 1187605 snp A G G:20 A:0 CDS - 628/1341 210/446 missense_variant c.628T>C p.Trp210Arg M5005_RS06090 xseA exodeoxyribonuclease VII large subunit SRR6840212.fasta NC_007297 1191744 snp G A A:20 G:0 CDS - 985/1410 329/469 missense_variant c.985C>T p.His329Tyr M5005_RS06105 cryptochrome/photolyase family protein SRR6840212.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR6840212.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR6840212.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR6840212.fasta NC_007297 1238124 snp G A A:20 G:0 SRR6840212.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR6840212.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR6840212.fasta NC_007297 1262625 snp G A A:20 G:0 CDS - 659/1485 220/494 missense_variant c.659C>T p.Thr220Ile M5005_RS06440 response regulator transcription factor SRR6840212.fasta NC_007297 1280854 del ATCCTTC A A:18 ATCCTTC:0 SRR6840212.fasta NC_007297 1294671 del CT C C:18 CT:0 SRR6840212.fasta NC_007297 1304000 snp A G G:20 A:0 CDS - 692/1323 231/440 missense_variant c.692T>C p.Ile231Thr M5005_RS06635 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB SRR6840212.fasta NC_007297 1369715 snp C T T:20 C:0 CDS - 172/978 58/325 missense_variant c.172G>A p.Glu58Lys M5005_RS06925 lacD tagatose-bisphosphate aldolase SRR6840212.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR6840212.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR6840212.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR6840212.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR6840212.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR6840212.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR6840212.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR6840212.fasta NC_007297 1535209 snp A G G:20 A:0 SRR6840212.fasta NC_007297 1539381 snp T C C:20 T:0 CDS + 1667/2283 556/760 missense_variant c.1667T>C p.Ile556Thr M5005_RS07795 Xaa-Pro dipeptidyl-peptidase SRR6840212.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR6840212.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR6840212.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR6840212.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR6840212.fasta NC_007297 1681273 del TCCATCAAAG T T:16 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR6840212.fasta NC_007297 1698194 snp C A A:20 C:0 SRR6840212.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR6840212.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR6840212.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR6840212.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR6840212.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR6840212.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR27240923.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR27240923.fasta NC_007297 44732 ins T TGAAA TGAAA:18 T:0 CDS + 602/1548 201/515 frameshift_variant c.598_601dupGAAA p.Lys201fs M5005_RS00290 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase SRR27240923.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR27240923.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha SRR27240923.fasta NC_007297 78621 snp A C C:20 A:0 CDS + 912/939 304/312 missense_variant c.912A>C p.Leu304Phe M5005_RS00495 DNA-directed RNA polymerase subunit alpha SRR27240923.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR27240923.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR27240923.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR27240923.fasta NC_007297 128032 snp A G G:20 A:0 CDS + 1017/1407 339/468 synonymous_variant c.1017A>G p.Pro339Pro M5005_RS00795 short-chain fatty acid transporter SRR27240923.fasta NC_007297 167489 snp C T T:20 C:0 SRR27240923.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR27240923.fasta NC_007297 263894 snp C T T:20 C:0 CDS + 811/924 271/307 missense_variant c.811C>T p.His271Tyr M5005_RS01420 ATP-binding cassette domain-containing protein SRR27240923.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR27240923.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR27240923.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR27240923.fasta NC_007297 343279 del TA T T:19 TA:0 SRR27240923.fasta NC_007297 365664 snp G A A:20 G:0 CDS + 675/960 225/319 synonymous_variant c.675G>A p.Val225Val M5005_RS01960 Gfo/Idh/MocA family protein SRR27240923.fasta NC_007297 448185 snp C A A:20 C:0 CDS - 810/1659 270/552 missense_variant c.810G>T p.Lys270Asn M5005_RS10025 DUF2326 domain-containing protein SRR27240923.fasta NC_007297 469479 snp A G G:20 A:0 CDS - 429/903 143/300 synonymous_variant c.429T>C p.Phe143Phe M5005_RS02500 permease SRR27240923.fasta NC_007297 488457 snp C T T:20 C:0 CDS - 949/1800 317/599 missense_variant c.949G>A p.Ala317Thr M5005_RS02615 pepF oligoendopeptidase F SRR27240923.fasta NC_007297 492497 snp G A A:20 G:0 SRR27240923.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR27240923.fasta NC_007297 528360 snp A T T:20 A:0 SRR27240923.fasta NC_007297 538418 ins G GA GA:19 G:0 SRR27240923.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR27240923.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR27240923.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR27240923.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR27240923.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR27240923.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR27240923.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR27240923.fasta NC_007297 641004 ins G GA GA:19 G:0 CDS + 889/891 297/296 frameshift_variant&stop_lost&splice_region_variant c.888dupA p.Ter297fs M5005_RS03270 RluA family pseudouridine synthase SRR27240923.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR27240923.fasta NC_007297 666922 snp T C C:20 T:0 CDS + 484/912 162/303 missense_variant c.484T>C p.Phe162Leu M5005_RS03380 pfkB 1-phosphofructokinase SRR27240923.fasta NC_007297 686095 snp G A A:20 G:0 CDS + 607/945 203/314 missense_variant c.607G>A p.Val203Ile M5005_RS03475 mvaD diphosphomevalonate decarboxylase SRR27240923.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR27240923.fasta NC_007297 709281 snp A G G:20 A:0 CDS + 441/864 147/287 synonymous_variant c.441A>G p.Gly147Gly M5005_RS03590 transporter substrate-binding domain-containing protein SRR27240923.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR27240923.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR27240923.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR27240923.fasta NC_007297 782255 snp A G G:20 A:0 SRR27240923.fasta NC_007297 782340 del GAACAA G G:17 GAACAA:0 SRR27240923.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR27240923.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR27240923.fasta NC_007297 791857 snp C T T:20 C:0 CDS + 306/506 102/167 synonymous_variant c.306C>T p.Phe102Phe M5005_RS03975 YkgJ family cysteine cluster protein SRR27240923.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR27240923.fasta NC_007297 832681 snp G A A:20 G:0 CDS + 220/615 74/204 missense_variant c.220G>A p.Val74Ile M5005_RS04205 SGNH/GDSL hydrolase family protein SRR27240923.fasta NC_007297 849931 snp C T T:20 C:0 CDS + 572/582 191/193 missense_variant c.572C>T p.Ala191Val M5005_RS04295 xanthine phosphoribosyltransferase SRR27240923.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR27240923.fasta NC_007297 908381 del TTAACAGGATAGC T T:17 TTAACAGGATAGC:0 CDS - 348/1224 113/407 conservative_inframe_deletion c.337_348delGCTATCCTGTTA p.Ala113_Leu116del M5005_RS04585 aminoacyltransferase SRR27240923.fasta NC_007297 911621 snp C T T:20 C:0 CDS - 553/867 185/288 missense_variant c.553G>A p.Gly185Ser M5005_RS04600 pyridoxamine kinase SRR27240923.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR27240923.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR27240923.fasta NC_007297 941418 snp G A A:20 G:0 SRR27240923.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR27240923.fasta NC_007297 942633 snp G T T:22 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR27240923.fasta NC_007297 957886 snp T C C:20 T:0 SRR27240923.fasta NC_007297 959346 snp C T T:20 C:0 SRR27240923.fasta NC_007297 969145 ins T TA TA:19 T:0 SRR27240923.fasta NC_007297 983438 snp G C C:22 G:0 SRR27240923.fasta NC_007297 1003874 snp C T T:20 C:0 CDS - 141/909 47/302 synonymous_variant c.141G>A p.Gly47Gly M5005_RS05075 minor capsid protein SRR27240923.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR27240923.fasta NC_007297 1064592 snp C T T:16 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR27240923.fasta NC_007297 1078022 snp T C C:20 T:0 CDS - 463/1284 155/427 missense_variant c.463A>G p.Asn155Asp M5005_RS05465 spxR CBS-HotDog domain-containing transcription factor SpxR SRR27240923.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR27240923.fasta NC_007297 1093427 snp A G G:20 A:0 CDS - 531/1275 177/424 synonymous_variant c.531T>C p.Tyr177Tyr M5005_RS05530 polysaccharide deacetylase family protein SRR27240923.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR27240923.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR27240923.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR27240923.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR27240923.fasta NC_007297 1221686 del AT A A:19 AT:0 CDS - 19/1038 7/345 frameshift_variant c.19delA p.Ile7fs M5005_RS06245 SepM family pheromone-processing serine protease SRR27240923.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR27240923.fasta NC_007297 1238124 snp G A A:20 G:0 SRR27240923.fasta NC_007297 1238540 snp G A A:20 G:0 CDS - 345/624 115/207 synonymous_variant c.345C>T p.Asp115Asp M5005_RS06330 TlpA disulfide reductase family protein SRR27240923.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR27240923.fasta NC_007297 1239129 snp G A A:20 G:0 CDS - 479/711 160/236 missense_variant c.479C>T p.Ala160Val M5005_RS06335 ccdA2 thiol-disulfide oxidoreductase-associated membrane protein CcdA2 SRR27240923.fasta NC_007297 1247663 snp C G G:20 C:0 CDS - 567/2409 189/802 missense_variant c.567G>C p.Trp189Cys M5005_RS06370 CRISPR-associated helicase/endonuclease Cas3 SRR27240923.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR27240923.fasta NC_007297 1294671 del CT C C:20 CT:0 SRR27240923.fasta NC_007297 1350795 del GT G G:20 GT:0 SRR27240923.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR27240923.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR27240923.fasta NC_007297 1401601 snp T C C:20 T:0 CDS - 342/600 114/199 synonymous_variant c.342A>G p.Glu114Glu M5005_RS07090 phage major tail protein, TP901-1 family SRR27240923.fasta NC_007297 1404135 snp T C C:20 T:0 CDS - 68/888 23/295 missense_variant c.68A>G p.Lys23Arg M5005_RS07115 phage major capsid protein SRR27240923.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR27240923.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR27240923.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR27240923.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR27240923.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR27240923.fasta NC_007297 1535209 snp A G G:20 A:0 SRR27240923.fasta NC_007297 1564140 snp G A A:20 G:0 SRR27240923.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR27240923.fasta NC_007297 1587056 snp T C C:20 T:0 CDS + 794/1581 265/526 missense_variant c.794T>C p.Met265Thr M5005_RS08045 type I restriction-modification system subunit M SRR27240923.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR27240923.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR27240923.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR27240923.fasta NC_007297 1643893 snp G A A:20 G:0 CDS - 120/849 40/282 synonymous_variant c.120C>T p.Ser40Ser M5005_RS08310 helix-turn-helix domain-containing protein SRR27240923.fasta NC_007297 1665863 snp G A A:20 G:0 CDS + 376/978 126/325 missense_variant c.376G>A p.Ala126Thr M5005_RS08410 ABC transporter permease SRR27240923.fasta NC_007297 1681273 del TCCATCAAAG T T:15 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR27240923.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:18 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR27240923.fasta NC_007297 1695313 snp G A A:20 G:0 CDS - 887/930 296/309 missense_variant c.887C>T p.Ala296Val M5005_RS08535 prsA peptidylprolyl isomerase PrsA SRR27240923.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR27240923.fasta NC_007297 1715580 del CT C C:19 CT:0 CDS + 213/912 71/303 frameshift_variant c.213delT p.Phe71fs M5005_RS08635 RluA family pseudouridine synthase SRR27240923.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR27240923.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR27240923.fasta NC_007297 1791480 snp C T T:20 C:0 CDS - 464/642 155/213 missense_variant c.464G>A p.Arg155His M5005_RS08970 NUDIX hydrolase SRR27240923.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR27240923.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR27240923.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR27240923.fasta NC_007297 1834211 del TA T T:19 TA:0 SRR21169823.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169823.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169823.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169823.fasta NC_007297 197819 snp C T T:20 C:0 CDS + 283/672 95/223 missense_variant c.283C>T p.Arg95Cys M5005_RS01130 rhomboid family intramembrane serine protease SRR21169823.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169823.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169823.fasta NC_007297 297677 snp C T T:20 C:0 CDS + 189/1311 63/436 synonymous_variant c.189C>T p.Asp63Asp M5005_RS01605 der ribosome biogenesis GTPase Der SRR21169823.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169823.fasta NC_007297 357575 snp G A A:20 G:0 SRR21169823.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169823.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169823.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169823.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169823.fasta NC_007297 674386 snp C A A:20 C:0 CDS + 285/849 95/282 synonymous_variant c.285C>A p.Gly95Gly M5005_RS03425 DegV family protein SRR21169823.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169823.fasta NC_007297 765490 snp A T T:20 A:0 SRR21169823.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169823.fasta NC_007297 768950 snp C T T:20 C:0 CDS + 50/642 17/213 missense_variant c.50C>T p.Ala17Val M5005_RS03865 hypothetical protein SRR21169823.fasta NC_007297 777479 ins A ATGGCTGGT ATGGCTGGT:17 A:0 CDS + 14/870 5/289 frameshift_variant c.6_13dupTGGTTGGC p.Arg5fs M5005_RS03895 cas1 type II CRISPR-associated endonuclease Cas1 SRR21169823.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169823.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169823.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169823.fasta NC_007297 810323 ins T TA TA:20 T:0 SRR21169823.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169823.fasta NC_007297 852899 snp C T T:20 C:0 CDS + 298/570 100/189 missense_variant c.298C>T p.Arg100Cys M5005_RS04315 thymidine kinase SRR21169823.fasta NC_007297 884500 del GA G G:19 GA:0 CDS + 127/315 43/104 frameshift_variant c.127delA p.Thr43fs M5005_RS04465 membrane protein SRR21169823.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169823.fasta NC_007297 940340 snp T C C:20 T:0 CDS - 976/2538 326/845 missense_variant c.976A>G p.Ile326Val M5005_RS04730 M1 family metallopeptidase SRR21169823.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169823.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169823.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169823.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169823.fasta NC_007297 1067226 snp C T T:20 C:0 SRR21169823.fasta NC_007297 1115324 del AC A A:20 AC:0 CDS - 393/963 131/320 frameshift_variant c.393delG p.Tyr132fs M5005_RS05630 competence protein CoiA SRR21169823.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169823.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169823.fasta NC_007297 1163064 snp T C C:20 T:0 CDS - 416/1494 139/497 missense_variant c.416A>G p.Asp139Gly M5005_RS05905 hypothetical protein SRR21169823.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169823.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169823.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169823.fasta NC_007297 1247749 del AT A A:19 AT:0 CDS - 480/2409 160/802 frameshift_variant c.480delA p.Lys160fs M5005_RS06370 CRISPR-associated helicase/endonuclease Cas3 SRR21169823.fasta NC_007297 1355057 del TA T T:19 TA:0 SRR21169823.fasta NC_007297 1366846 snp T C C:20 T:0 CDS + 171/558 57/185 synonymous_variant c.171T>C p.Ser57Ser M5005_RS06910 TetR/AcrR family transcriptional regulator SRR21169823.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169823.fasta NC_007297 1446758 snp G A A:20 G:0 CDS - 51/735 17/244 synonymous_variant c.51C>T p.Ile17Ile M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169823.fasta NC_007297 1448666 snp C T T:20 C:0 CDS - 67/972 23/323 missense_variant c.67G>A p.Val23Ile M5005_RS07390 fabK enoyl-[acyl-carrier-protein] reductase FabK SRR21169823.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169823.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169823.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169823.fasta NC_007297 1492716 snp G A A:20 G:0 CDS - 2136/2520 712/839 synonymous_variant c.2136C>T p.Phe712Phe M5005_RS07590 secA preprotein translocase subunit SecA SRR21169823.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169823.fasta NC_007297 1569076 snp A T T:20 A:0 SRR21169823.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169823.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169823.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169823.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169823.fasta NC_007297 1792108 snp A T T:20 A:0 SRR21169823.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169823.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR6835556.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR6835556.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR6835556.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha SRR6835556.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR6835556.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR6835556.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR6835556.fasta NC_007297 137500 snp T C C:20 T:0 CDS + 290/480 97/159 missense_variant c.290T>C p.Val97Ala M5005_RS00850 V-type ATP synthase subunit K SRR6835556.fasta NC_007297 167489 snp C T T:20 C:0 SRR6835556.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR6835556.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR6835556.fasta NC_007297 293229 ins C CT CT:18 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR6835556.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR6835556.fasta NC_007297 343279 del TA T T:20 TA:0 SRR6835556.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR6835556.fasta NC_007297 528360 snp A T T:20 A:0 SRR6835556.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR6835556.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR6835556.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR6835556.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR6835556.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR6835556.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR6835556.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR6835556.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR6835556.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR6835556.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR6835556.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR6835556.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR6835556.fasta NC_007297 782255 snp A G G:20 A:0 SRR6835556.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR6835556.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR6835556.fasta NC_007297 815061 del TA T T:19 TA:0 SRR6835556.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR6835556.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR6835556.fasta NC_007297 866859 snp G A A:20 G:0 CDS + 1460/2487 487/828 missense_variant c.1460G>A p.Gly487Asp M5005_RS04375 gyrA DNA gyrase subunit A SRR6835556.fasta NC_007297 875060 snp T C C:20 T:0 SRR6835556.fasta NC_007297 909756 del GT G G:19 GT:0 CDS - 882/1545 294/514 frameshift_variant c.882delA p.Lys294fs M5005_RS04590 ABC-F family ATP-binding cassette domain-containing protein SRR6835556.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR6835556.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR6835556.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR6835556.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR6835556.fasta NC_007297 957886 snp T C C:20 T:0 SRR6835556.fasta NC_007297 959346 snp C T T:20 C:0 SRR6835556.fasta NC_007297 983438 snp G C C:20 G:0 SRR6835556.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR6835556.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR6835556.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR6835556.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR6835556.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR6835556.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR6835556.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR6835556.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR6835556.fasta NC_007297 1238124 snp G A A:20 G:0 SRR6835556.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR6835556.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR6835556.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR6835556.fasta NC_007297 1323647 snp G A A:20 G:0 CDS + 1459/2166 487/721 missense_variant c.1459G>A p.Ala487Thr M5005_RS06725 pbp1a penicillin-binding protein PBP1A SRR6835556.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR6835556.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR6835556.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR6835556.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR6835556.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR6835556.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR6835556.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR6835556.fasta NC_007297 1535209 snp A G G:20 A:0 SRR6835556.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR6835556.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR6835556.fasta NC_007297 1630160 del CT C C:20 CT:0 SRR6835556.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR6835556.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR6835556.fasta NC_007297 1681672 snp A T T:20 A:0 CDS - 276/942 92/313 missense_variant c.276T>A p.Asp92Glu M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR6835556.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR6835556.fasta NC_007297 1728631 snp T C C:20 T:0 SRR6835556.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR6835556.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR6835556.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR6835556.fasta NC_007297 1815391 snp C T T:20 C:0 CDS - 340/1026 114/341 missense_variant c.340G>A p.Gly114Ser M5005_RS09085 helix-turn-helix domain-containing protein SRR6835556.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR6835556.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169805.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169805.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169805.fasta NC_007297 126778 snp A G G:20 A:0 SRR21169805.fasta NC_007297 149124 snp G A A:20 G:0 SRR21169805.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169805.fasta NC_007297 212845 snp G T T:20 G:0 CDS + 583/1284 195/427 missense_variant c.583G>T p.Ala195Ser M5005_RS01195 sensor histidine kinase SRR21169805.fasta NC_007297 288831 snp A G G:20 A:0 CDS - 150/1377 50/458 synonymous_variant c.150T>C p.Phe50Phe M5005_RS01555 ktrB potassium uptake transporter channel subunit KtrB SRR21169805.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169805.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169805.fasta NC_007297 317937 del GA G G:19 GA:0 SRR21169805.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169805.fasta NC_007297 368652 snp C T T:20 C:0 CDS + 861/1383 287/460 synonymous_variant c.861C>T p.Gly287Gly M5005_RS01970 glmU bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU SRR21169805.fasta NC_007297 413350 snp G T T:20 G:0 CDS - 91/378 31/125 missense_variant c.91C>A p.Arg31Ser M5005_RS02230 lactoylglutathione lyase SRR21169805.fasta NC_007297 447013 del TAA T T:20 TAA:0 CDS + 1192/1209 398/402 frameshift_variant c.1192_1193delAA p.Lys398fs M5005_RS02370 MFS transporter SRR21169805.fasta NC_007297 503870 snp C T T:20 C:0 CDS + 1704/2682 568/893 synonymous_variant c.1704C>T p.Gly568Gly M5005_RS02670 cation-translocating P-type ATPase SRR21169805.fasta NC_007297 511352 snp C A A:20 C:0 CDS - 403/438 135/145 missense_variant c.403G>T p.Asp135Tyr M5005_RS02705 PTS sugar transporter subunit IIA SRR21169805.fasta NC_007297 530171 snp A C C:20 A:0 CDS + 645/978 215/325 synonymous_variant c.645A>C p.Ala215Ala M5005_RS02785 YvcK family protein SRR21169805.fasta NC_007297 530287 snp T C C:20 T:0 CDS + 761/978 254/325 missense_variant c.761T>C p.Val254Ala M5005_RS02785 YvcK family protein SRR21169805.fasta NC_007297 535998 snp G A A:20 G:0 CDS + 469/1200 157/399 missense_variant c.469G>A p.Ala157Thr M5005_RS02810 SIS domain-containing protein SRR21169805.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169805.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169805.fasta NC_007297 574816 snp C G G:20 C:0 CDS + 544/1023 182/340 missense_variant c.544C>G p.Pro182Ala M5005_RS02955 diacylglycerol kinase family lipid kinase SRR21169805.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169805.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169805.fasta NC_007297 650271 snp G A A:20 G:0 CDS + 64/711 22/236 missense_variant c.64G>A p.Asp22Asn M5005_RS03305 ABC transporter ATP-binding protein SRR21169805.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169805.fasta NC_007297 752125 snp T C C:20 T:0 CDS + 1136/1908 379/635 missense_variant c.1136T>C p.Leu379Pro M5005_RS03800 ABC-F family ATP-binding cassette domain-containing protein SRR21169805.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169805.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169805.fasta NC_007297 782255 snp A G G:19 A:0 SRR21169805.fasta NC_007297 782340 ins G GAACAAAACAA GAACAAAACAA:15 G:0 SRR21169805.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169805.fasta NC_007297 794049 snp C G G:20 C:0 CDS + 450/1398 150/465 missense_variant c.450C>G p.Asn150Lys M5005_RS03990 NAD-dependent succinate-semialdehyde dehydrogenase SRR21169805.fasta NC_007297 810310 snp T C C:20 T:0 SRR21169805.fasta NC_007297 837039 snp C A A:20 C:0 CDS - 24/348 8/115 missense_variant c.24G>T p.Lys8Asn M5005_RS04230 DUF1831 domain-containing protein SRR21169805.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169805.fasta NC_007297 868663 snp T A A:20 T:0 SRR21169805.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169805.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169805.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169805.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169805.fasta NC_007297 964285 snp C G G:20 C:0 CDS - 274/2319 92/772 missense_variant c.274G>C p.Val92Leu M5005_RS04860 pcrA DNA helicase PcrA SRR21169805.fasta NC_007297 982541 snp C A A:20 C:0 CDS + 700/786 234/261 missense_variant c.700C>A p.Leu234Ile M5005_RS04935 hypothetical protein SRR21169805.fasta NC_007297 983308 snp T A A:20 T:0 CDS - 61/615 21/204 missense_variant c.61A>T p.Ile21Phe M5005_RS04940 TVP38/TMEM64 family protein SRR21169805.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169805.fasta NC_007297 1064592 snp C T T:17 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169805.fasta NC_007297 1080007 snp T A A:20 T:0 SRR21169805.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169805.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169805.fasta NC_007297 1161690 snp A T T:15 A:0 CDS - 17/180 6/59 stop_gained c.17T>A p.Leu6* M5005_RS05895 hypothetical protein SRR21169805.fasta NC_007297 1161707 complex AT GC GC:17 AT:0 SRR21169805.fasta NC_007297 1161784 snp C T T:20 C:0 CDS - 197/225 66/74 missense_variant c.197G>A p.Gly66Asp M5005_RS05900 hypothetical protein SRR21169805.fasta NC_007297 1163104 snp T C C:20 T:0 CDS - 376/1494 126/497 missense_variant c.376A>G p.Arg126Gly M5005_RS05905 hypothetical protein SRR21169805.fasta NC_007297 1163219 snp C T T:20 C:0 CDS - 261/1494 87/497 synonymous_variant c.261G>A p.Gly87Gly M5005_RS05905 hypothetical protein SRR21169805.fasta NC_007297 1165168 snp A G G:12 A:0 SRR21169805.fasta NC_007297 1165178 snp T G G:11 T:0 SRR21169805.fasta NC_007297 1165183 complex AG CC CC:11 AG:0 SRR21169805.fasta NC_007297 1165194 complex ATTTC GTTTA GTTTA:10 ATTTC:0 SRR21169805.fasta NC_007297 1165217 snp T C C:10 T:0 SRR21169805.fasta NC_007297 1165228 del AT A A:10 AT:0 SRR21169805.fasta NC_007297 1165236 complex CTAAAA ACAAAT ACAAAT:10 CTAAAA:0 SRR21169805.fasta NC_007297 1165251 snp A T T:10 A:0 CDS - 336/345 112/114 missense_variant c.336T>A p.Phe112Leu M5005_RS05920 HNH endonuclease signature motif containing protein SRR21169805.fasta NC_007297 1165256 snp C T T:11 C:0 CDS - 331/345 111/114 missense_variant c.331G>A p.Ala111Thr M5005_RS05920 HNH endonuclease signature motif containing protein SRR21169805.fasta NC_007297 1165830 snp C T T:19 C:0 CDS - 285/420 95/139 synonymous_variant c.285G>A p.Leu95Leu M5005_RS05925 DUF1492 domain-containing protein SRR21169805.fasta NC_007297 1165836 snp C T T:19 C:0 CDS - 279/420 93/139 synonymous_variant c.279G>A p.Thr93Thr M5005_RS05925 DUF1492 domain-containing protein SRR21169805.fasta NC_007297 1165875 snp T C C:19 T:0 CDS - 240/420 80/139 synonymous_variant c.240A>G p.Gln80Gln M5005_RS05925 DUF1492 domain-containing protein SRR21169805.fasta NC_007297 1165905 snp A G G:19 A:0 CDS - 210/420 70/139 synonymous_variant c.210T>C p.Ala70Ala M5005_RS05925 DUF1492 domain-containing protein SRR21169805.fasta NC_007297 1165917 complex TTCA CTCG CTCG:18 TTCA:0 CDS - 198/420 65/139 synonymous_variant c.195_198delTGAAinsCGAG p.67 M5005_RS05925 DUF1492 domain-containing protein SRR21169805.fasta NC_007297 1165928 snp T C C:18 T:0 CDS - 187/420 63/139 missense_variant c.187A>G p.Lys63Glu M5005_RS05925 DUF1492 domain-containing protein SRR21169805.fasta NC_007297 1165986 snp C A A:15 C:0 CDS - 129/420 43/139 synonymous_variant c.129G>T p.Val43Val M5005_RS05925 DUF1492 domain-containing protein SRR21169805.fasta NC_007297 1165995 snp A G G:14 A:0 CDS - 120/420 40/139 synonymous_variant c.120T>C p.Ser40Ser M5005_RS05925 DUF1492 domain-containing protein SRR21169805.fasta NC_007297 1166022 complex CGAAGC TGAGGT TGAGGT:11 CGAAGC:0 CDS - 93/420 30/139 missense_variant c.88_93delGCTTCGinsACCTCA p.Ala30Thr M5005_RS05925 DUF1492 domain-containing protein SRR21169805.fasta NC_007297 1166037 complex ATCTC TTCCT TTCCT:11 ATCTC:0 CDS - 78/420 25/139 missense_variant c.74_78delGAGATinsAGGAA p.ArgAsp25GlnGlu M5005_RS05925 DUF1492 domain-containing protein SRR21169805.fasta NC_007297 1166049 snp G A A:11 G:0 CDS - 66/420 22/139 synonymous_variant c.66C>T p.Ile22Ile M5005_RS05925 DUF1492 domain-containing protein SRR21169805.fasta NC_007297 1168748 complex CGTG TGTA TGTA:10 CGTG:0 CDS - 627/798 208/265 synonymous_variant c.624_627delCACGinsTACA p.210 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1168757 snp C T T:10 C:0 CDS - 618/798 206/265 synonymous_variant c.618G>A p.Pro206Pro M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1168766 complex TTTAGTCACTGCA CTTGGTTACCGCG CTTGGTTACCGCG:11 TTTAGTCACTGCA:0 CDS - 609/798 199/265 synonymous_variant c.597_609delTGCAGTGACTAAAinsCGCGGTAACCAAG p.204 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1168792 complex TA CG CG:13 TA:0 CDS - 583/798 194/265 missense_variant c.582_583delTAinsCG p.Lys195Glu M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1168799 snp C T T:14 C:0 CDS - 576/798 192/265 synonymous_variant c.576G>A p.Lys192Lys M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1168805 snp G A A:14 G:0 CDS - 570/798 190/265 synonymous_variant c.570C>T p.Tyr190Tyr M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1168819 snp G A A:15 G:0 CDS - 556/798 186/265 synonymous_variant c.556C>T p.Leu186Leu M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1168847 snp A G G:15 A:0 CDS - 528/798 176/265 synonymous_variant c.528T>C p.Ile176Ile M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1168856 snp A G G:14 A:0 CDS - 519/798 173/265 synonymous_variant c.519T>C p.Tyr173Tyr M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1168862 snp T C C:13 T:0 CDS - 513/798 171/265 synonymous_variant c.513A>G p.Glu171Glu M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1168886 complex TCTAT GCCAC GCCAC:11 TCTAT:0 CDS - 489/798 162/265 missense_variant c.485_489delATAGAinsGTGGC p.AsnArg162SerGly M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1168895 complex GATT AATC AATC:11 GATT:0 CDS - 480/798 159/265 synonymous_variant c.477_480delAATCinsGATT p.161 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1168960 snp A G G:15 A:0 CDS - 415/798 139/265 synonymous_variant c.415T>C p.Leu139Leu M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1168987 snp C T T:15 C:0 CDS - 388/798 130/265 missense_variant c.388G>A p.Val130Ile M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1169018 snp T C C:16 T:0 CDS - 357/798 119/265 synonymous_variant c.357A>G p.Lys119Lys M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1169033 complex TATG GATA GATA:15 TATG:0 CDS - 342/798 113/265 synonymous_variant c.339_342delCATAinsTATC p.115 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1169042 snp G A A:16 G:0 CDS - 333/798 111/265 synonymous_variant c.333C>T p.Phe111Phe M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1169051 complex GTCAT ATCAC ATCAC:15 GTCAT:0 CDS - 324/798 107/265 missense_variant c.320_324delATGACinsGTGAT p.Asn107Ser M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1169063 complex TGCT AGCG AGCG:15 TGCT:0 CDS - 312/798 103/265 missense_variant c.309_312delAGCAinsCGCT p.Glu103Asp M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1169081 complex TGCG AGCA AGCA:13 TGCG:0 CDS - 294/798 97/265 synonymous_variant c.291_294delCGCAinsTGCT p.99 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1169090 complex ATAGTCT GTAATCC GTAATCC:13 ATAGTCT:0 CDS - 285/798 93/265 synonymous_variant c.279_285delAGACTATinsGGATTAC p.96 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1169102 complex GAGCTGA TAATTGG TAATTGG:13 GAGCTGA:0 CDS - 273/798 89/265 synonymous_variant c.267_273delTCAGCTCinsCCAATTA p.92 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1169114 snp A T T:15 A:0 CDS - 261/798 87/265 synonymous_variant c.261T>A p.Thr87Thr M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1169119 snp T C C:15 T:0 CDS - 256/798 86/265 missense_variant c.256A>G p.Thr86Ala M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1169125 snp T G G:16 T:0 CDS - 250/798 84/265 synonymous_variant c.250A>C p.Arg84Arg M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1169145 snp T C C:16 T:0 CDS - 230/798 77/265 missense_variant c.230A>G p.Asp77Gly M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1169175 complex GC TT TT:13 GC:0 CDS - 200/798 67/265 missense_variant c.199_200delGCinsAA p.Ala67Lys M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1169218 snp G A A:10 G:0 CDS - 157/798 53/265 synonymous_variant c.157C>T p.Leu53Leu M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169805.fasta NC_007297 1169854 snp T G G:20 T:0 CDS - 447/930 149/309 missense_variant c.447A>C p.Leu149Phe M5005_RS05955 recombinase RecT SRR21169805.fasta NC_007297 1170004 snp A C C:20 A:0 CDS - 297/930 99/309 synonymous_variant c.297T>G p.Ala99Ala M5005_RS05955 recombinase RecT SRR21169805.fasta NC_007297 1170141 snp C T T:20 C:0 CDS - 160/930 54/309 missense_variant c.160G>A p.Glu54Lys M5005_RS05955 recombinase RecT SRR21169805.fasta NC_007297 1170196 snp T C C:19 T:0 CDS - 105/930 35/309 synonymous_variant c.105A>G p.Ala35Ala M5005_RS05955 recombinase RecT SRR21169805.fasta NC_007297 1170246 snp T C C:19 T:0 CDS - 55/930 19/309 missense_variant c.55A>G p.Ile19Val M5005_RS05955 recombinase RecT SRR21169805.fasta NC_007297 1170378 complex AACATCC CACTGAT CACTGAT:17 AACATCC:0 CDS - 255/330 83/109 missense_variant c.249_255delGGATGTTinsATCAGTG p.Asp84Ser M5005_RS05960 hypothetical protein SRR21169805.fasta NC_007297 1170463 ins A AT AT:18 A:0 CDS - 169/330 57/109 frameshift_variant c.169dupA p.Ile57fs M5005_RS05960 hypothetical protein SRR21169805.fasta NC_007297 1170646 complex CC TT TT:20 CC:0 SRR21169805.fasta NC_007297 1170805 snp C A A:20 C:0 CDS - 90/207 30/68 missense_variant c.90G>T p.Glu30Asp M5005_RS05965 hypothetical protein SRR21169805.fasta NC_007297 1170899 snp T C C:20 T:0 SRR21169805.fasta NC_007297 1170921 snp G A A:20 G:0 CDS - 123/141 41/46 synonymous_variant c.123C>T p.Arg41Arg M5005_RS09935 hypothetical protein SRR21169805.fasta NC_007297 1170944 snp T C C:20 T:0 CDS - 100/141 34/46 missense_variant c.100A>G p.Met34Val M5005_RS09935 hypothetical protein SRR21169805.fasta NC_007297 1170949 complex TGTGA CGTGC CGTGC:20 TGTGA:0 CDS - 95/141 31/46 missense_variant c.91_95delTCACAinsGCACG p.SerGln31AlaArg M5005_RS09935 hypothetical protein SRR21169805.fasta NC_007297 1170963 complex AAGCCCG TAGTCCA TAGTCCA:19 AAGCCCG:0 CDS - 81/141 25/46 synonymous_variant c.75_81delCGGGCTTinsTGGACTA p.28 M5005_RS09935 hypothetical protein SRR21169805.fasta NC_007297 1170999 snp G A A:20 G:0 CDS - 45/141 15/46 synonymous_variant c.45C>T p.Ser15Ser M5005_RS09935 hypothetical protein SRR21169805.fasta NC_007297 1171007 snp T G G:20 T:0 CDS - 37/141 13/46 synonymous_variant c.37A>C p.Arg13Arg M5005_RS09935 hypothetical protein SRR21169805.fasta NC_007297 1171032 snp C T T:20 C:0 CDS - 12/141 4/46 synonymous_variant c.12G>A p.Gln4Gln M5005_RS09935 hypothetical protein SRR21169805.fasta NC_007297 1171047 snp A G G:20 A:0 CDS - 227/234 76/77 missense_variant c.227T>C p.Val76Ala M5005_RS05970 hypothetical protein SRR21169805.fasta NC_007297 1171076 complex TAAT CAAC CAAC:20 TAAT:0 CDS - 198/234 65/77 synonymous_variant c.195_198delATTAinsGTTG p.67 M5005_RS05970 hypothetical protein SRR21169805.fasta NC_007297 1171106 snp G A A:20 G:0 CDS - 168/234 56/77 synonymous_variant c.168C>T p.Thr56Thr M5005_RS05970 hypothetical protein SRR21169805.fasta NC_007297 1172361 snp A G G:11 A:0 CDS - 265/312 89/103 missense_variant c.265T>C p.Ser89Pro M5005_RS05990 hypothetical protein SRR21169805.fasta NC_007297 1172383 snp A G G:13 A:0 CDS - 243/312 81/103 synonymous_variant c.243T>C p.Tyr81Tyr M5005_RS05990 hypothetical protein SRR21169805.fasta NC_007297 1172427 snp C T T:16 C:0 CDS - 199/312 67/103 missense_variant c.199G>A p.Glu67Lys M5005_RS05990 hypothetical protein SRR21169805.fasta NC_007297 1177947 snp G A A:20 G:0 CDS + 267/1143 89/380 synonymous_variant c.267G>A p.Arg89Arg M5005_RS06035 tyrosine-type recombinase/integrase SRR21169805.fasta NC_007297 1177953 snp C T T:20 C:0 CDS + 273/1143 91/380 synonymous_variant c.273C>T p.Asn91Asn M5005_RS06035 tyrosine-type recombinase/integrase SRR21169805.fasta NC_007297 1178265 snp T A A:20 T:0 CDS + 585/1143 195/380 synonymous_variant c.585T>A p.Arg195Arg M5005_RS06035 tyrosine-type recombinase/integrase SRR21169805.fasta NC_007297 1178769 snp G T T:20 G:0 CDS + 1089/1143 363/380 synonymous_variant c.1089G>T p.Thr363Thr M5005_RS06035 tyrosine-type recombinase/integrase SRR21169805.fasta NC_007297 1178842 snp A C C:20 A:0 SRR21169805.fasta NC_007297 1178878 complex GG AC AC:19 GG:0 SRR21169805.fasta NC_007297 1178887 del GA G G:19 GA:0 SRR21169805.fasta NC_007297 1178905 snp C A A:20 C:0 SRR21169805.fasta NC_007297 1200286 snp G A A:20 G:0 CDS - 951/2802 317/933 synonymous_variant c.951C>T p.Thr317Thr M5005_RS06140 ileS isoleucine--tRNA ligase SRR21169805.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169805.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169805.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169805.fasta NC_007297 1248373 snp G A A:20 G:0 SRR21169805.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169805.fasta NC_007297 1400979 snp G A A:20 G:0 CDS - 311/456 104/151 missense_variant c.311C>T p.Ser104Phe M5005_RS07085 tail assembly chaperone SRR21169805.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169805.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169805.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169805.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169805.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169805.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169805.fasta NC_007297 1663706 snp T G G:20 T:0 SRR21169805.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169805.fasta NC_007297 1681766 del CCATCTCCAGACCAGTCATCTTCAGGCCAGT C C:13 CCATCTCCAGACCAGTCATCTTCAGGCCAGT:0 CDS - 181/942 51/313 disruptive_inframe_deletion c.152_181delACTGGCCTGAAGATGACTGGTCTGGAGATG p.Asp51_Asp60del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169805.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169805.fasta NC_007297 1741927 snp T C C:20 T:0 CDS + 213/987 71/328 synonymous_variant c.213T>C p.Ser71Ser M5005_RS08745 formimidoylglutamase SRR21169805.fasta NC_007297 1754171 snp T C C:20 T:0 SRR21169805.fasta NC_007297 1768820 ins C CT CT:19 C:0 CDS - 371/561 124/186 frameshift_variant c.371dupA p.Pro125fs M5005_RS08855 DNA-3-methyladenine glycosylase I SRR21169805.fasta NC_007297 1786807 snp G T T:20 G:0 CDS + 335/339 112/112 missense_variant c.335G>T p.Gly112Val M5005_RS08940 cadX Cd(II)/Zn(II)-sensing metalloregulatory transcriptional regulator CadX SRR21169805.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169805.fasta NC_007297 1818491 snp T G G:20 T:0 SRR21169805.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359400.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359400.fasta NC_007297 73671 ins T TA TA:19 T:0 ERR1359400.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359400.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1359400.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359400.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359400.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359400.fasta NC_007297 116602 snp T C C:20 T:0 CDS - 515/1494 172/497 missense_variant c.515A>G p.Lys172Arg M5005_RS00740 rofA transcriptional regulator RofA ERR1359400.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359400.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359400.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359400.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359400.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359400.fasta NC_007297 343279 del TA T T:18 TA:0 ERR1359400.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359400.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359400.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359400.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359400.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359400.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359400.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359400.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359400.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359400.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359400.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359400.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359400.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359400.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359400.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359400.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359400.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359400.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359400.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359400.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359400.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359400.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359400.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359400.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359400.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359400.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359400.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359400.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359400.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359400.fasta NC_007297 1118949 snp C T T:20 C:0 CDS + 162/1221 54/406 synonymous_variant c.162C>T p.Leu54Leu M5005_RS05650 DUF3114 domain-containing protein ERR1359400.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359400.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359400.fasta NC_007297 1173520 snp G A A:20 G:0 CDS + 85/807 29/268 missense_variant c.85G>A p.Gly29Ser M5005_RS06005 TIGR02391 family protein ERR1359400.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359400.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359400.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359400.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359400.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359400.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359400.fasta NC_007297 1294671 del CT C C:19 CT:0 ERR1359400.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359400.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359400.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359400.fasta NC_007297 1418931 ins C CT CT:20 C:0 CDS - 36/558 12/185 frameshift_variant c.36dupA p.Val13fs M5005_RS07195 DUF2815 family protein ERR1359400.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359400.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359400.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359400.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359400.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359400.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359400.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359400.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359400.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359400.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359400.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359400.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359400.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359400.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359400.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359400.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169878.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169878.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169878.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169878.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169878.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169878.fasta NC_007297 126007 snp C T T:20 C:0 CDS - 661/666 221/221 missense_variant c.661G>A p.Glu221Lys M5005_RS00790 hypothetical protein SRR21169878.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169878.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169878.fasta NC_007297 253420 snp A G G:20 A:0 CDS + 354/1419 118/472 synonymous_variant c.354A>G p.Ala118Ala M5005_RS01385 sufB Fe-S cluster assembly protein SufB SRR21169878.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169878.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169878.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169878.fasta NC_007297 343279 del TA T T:18 TA:0 SRR21169878.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169878.fasta NC_007297 528231 snp A G G:20 A:0 SRR21169878.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169878.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169878.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169878.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169878.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169878.fasta NC_007297 595011 snp G A A:20 G:0 CDS + 2486/3216 829/1071 missense_variant c.2486G>A p.Ser829Asn M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169878.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169878.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169878.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169878.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169878.fasta NC_007297 681603 snp A G G:20 A:0 SRR21169878.fasta NC_007297 684809 snp A G G:20 A:0 CDS + 181/879 61/292 missense_variant c.181A>G p.Ile61Val M5005_RS03470 mvk mevalonate kinase SRR21169878.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169878.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169878.fasta NC_007297 741899 snp C A A:20 C:0 CDS + 375/1248 125/415 synonymous_variant c.375C>A p.Gly125Gly M5005_RS03760 tetratricopeptide repeat protein SRR21169878.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169878.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169878.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169878.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169878.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169878.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169878.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169878.fasta NC_007297 854429 snp C T T:20 C:0 CDS + 145/840 49/279 missense_variant c.145C>T p.Pro49Ser M5005_RS04325 prmC peptide chain release factor N(5)-glutamine methyltransferase SRR21169878.fasta NC_007297 899397 snp G C C:20 G:0 CDS - 834/1071 278/356 synonymous_variant c.834C>G p.Gly278Gly M5005_RS04550 xerS tyrosine recombinase XerS SRR21169878.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169878.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169878.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169878.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169878.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169878.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169878.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169878.fasta NC_007297 989541 snp T C C:20 T:0 CDS - 1783/1863 595/620 missense_variant c.1783A>G p.Asn595Asp M5005_RS05000 DUF859 family phage minor structural protein SRR21169878.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169878.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169878.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169878.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169878.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169878.fasta NC_007297 1156393 snp T C C:20 T:0 CDS - 366/594 122/197 synonymous_variant c.366A>G p.Glu122Glu M5005_RS05845 phage tail tube protein SRR21169878.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169878.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169878.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169878.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169878.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169878.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169878.fasta NC_007297 1263296 snp C T T:20 C:0 CDS - 1712/1725 571/574 missense_variant c.1712G>A p.Arg571Lys M5005_RS06445 sensor histidine kinase SRR21169878.fasta NC_007297 1277660 snp C T T:20 C:0 CDS + 971/2706 324/901 missense_variant c.971C>T p.Ala324Val M5005_RS06495 alpha-mannosidase SRR21169878.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169878.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169878.fasta NC_007297 1391003 snp C A A:20 C:0 CDS - 583/1908 195/635 missense_variant c.583G>T p.Ala195Ser M5005_RS07050 gp58-like family protein SRR21169878.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169878.fasta NC_007297 1404939 complex TTTA ATTT ATTT:19 TTTA:0 SRR21169878.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169878.fasta NC_007297 1408878 ins C CA CA:18 C:0 CDS - 780/1278 260/425 frameshift_variant c.780dupT p.Gly261fs M5005_RS07145 PBSX family phage terminase large subunit SRR21169878.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169878.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169878.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169878.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169878.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169878.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169878.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169878.fasta NC_007297 1627308 snp T C C:20 T:0 CDS - 2603/4398 868/1465 missense_variant c.2603A>G p.Lys868Arg M5005_RS08260 PolC-type DNA polymerase III SRR21169878.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169878.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169878.fasta NC_007297 1681273 del TCCATCAAAG T T:15 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169878.fasta NC_007297 1681641 del TTTTATCGCTAGACCAGTCATCTTCAGGCCAATCTTCAGGCCATTCTTC T T:12 TTTTATCGCTAGACCAGTCATCTTCAGGCCAATCTTCAGGCCATTCTTC:0 CDS - 306/942 87/313 conservative_inframe_deletion c.259_306delGAAGAATGGCCTGAAGATTGGCCTGAAGATGACTGGTCTAGCGATAAA p.Glu87_Lys102del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169878.fasta NC_007297 1699284 snp G A A:20 G:0 CDS + 163/843 55/280 missense_variant c.163G>A p.Val55Ile M5005_RS08550 ropB quorum-sensing system transcriptional regulator RopB/Rgg1 SRR21169878.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169878.fasta NC_007297 1709601 snp G T T:20 G:0 CDS - 66/981 22/326 missense_variant c.66C>A p.Ser22Arg M5005_RS08595 sugar-binding transcriptional regulator SRR21169878.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169878.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169878.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169878.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169878.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein A24-292.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase A24-292.fasta NC_007297 53195 del TA T T:18 TA:0 A24-292.fasta NC_007297 58315 snp A G G:20 A:0 A24-292.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase A24-292.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha A24-292.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein A24-292.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA A24-292.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA A24-292.fasta NC_007297 167489 snp C T T:20 C:0 A24-292.fasta NC_007297 197209 snp T C C:10 T:0 CDS + 1120/1123 374/373 synonymous_variant c.1120T>C p.Leu374Leu M5005_RS09290 ISAs1-like element IS1548 family transposase A24-292.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD A24-292.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein A24-292.fasta NC_007297 293229 ins C CT CT:18 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS A24-292.fasta NC_007297 310333 snp G A A:14 G:0 A24-292.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' A24-292.fasta NC_007297 343279 del TA T T:20 TA:0 A24-292.fasta NC_007297 454137 snp G T T:20 G:0 CDS + 337/1248 113/415 stop_gained c.337G>T p.Glu113* M5005_RS02430 ATP-grasp domain-containing protein A24-292.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase A24-292.fasta NC_007297 528360 snp A T T:20 A:0 A24-292.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:16 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase A24-292.fasta NC_007297 552045 snp T C C:20 T:0 CDS - 177/888 59/295 synonymous_variant c.177A>G p.Leu59Leu M5005_RS10050 helix-turn-helix domain-containing protein A24-292.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S A24-292.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase A24-292.fasta NC_007297 564422 snp G A A:20 G:0 CDS + 277/684 93/227 missense_variant c.277G>A p.Ala93Thr M5005_RS02920 SagF family protein A24-292.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B A24-292.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD A24-292.fasta NC_007297 608842 snp C T T:20 C:0 CDS + 84/1206 28/401 synonymous_variant c.84C>T p.Arg28Arg M5005_RS03115 ABC transporter ATP-binding protein A24-292.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein A24-292.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase A24-292.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD A24-292.fasta NC_007297 661778 snp C T T:20 C:0 CDS + 201/732 67/243 synonymous_variant c.201C>T p.Asp67Asp M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD A24-292.fasta NC_007297 673198 snp A G G:20 A:0 A24-292.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase A24-292.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ A24-292.fasta NC_007297 752477 snp C T T:20 C:0 CDS + 1488/1908 496/635 synonymous_variant c.1488C>T p.Val496Val M5005_RS03800 ABC-F family ATP-binding cassette domain-containing protein A24-292.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase A24-292.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase A24-292.fasta NC_007297 782255 snp A G G:20 A:0 A24-292.fasta NC_007297 782340 del GAACAA G G:18 GAACAA:0 A24-292.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein A24-292.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein A24-292.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase A24-292.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein A24-292.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase A24-292.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase A24-292.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU A24-292.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB A24-292.fasta NC_007297 957886 snp T C C:20 T:0 A24-292.fasta NC_007297 959346 snp C T T:20 C:0 A24-292.fasta NC_007297 983438 snp G C C:20 G:0 A24-292.fasta NC_007297 1026837 del CT C C:20 CT:0 A24-292.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA A24-292.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase A24-292.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase A24-292.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein A24-292.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein A24-292.fasta NC_007297 1166919 snp A G G:10 A:0 CDS - 99/636 33/211 synonymous_variant c.99T>C p.Arg33Arg M5005_RS05930 N-6 DNA methylase A24-292.fasta NC_007297 1173984 snp G A A:20 G:0 CDS + 549/807 183/268 synonymous_variant c.549G>A p.Leu183Leu M5005_RS06005 TIGR02391 family protein A24-292.fasta NC_007297 1191744 snp G A A:20 G:0 CDS - 985/1410 329/469 missense_variant c.985C>T p.His329Tyr M5005_RS06105 cryptochrome/photolyase family protein A24-292.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA A24-292.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator A24-292.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein A24-292.fasta NC_007297 1238124 snp G A A:20 G:0 A24-292.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein A24-292.fasta NC_007297 1243359 snp G A A:20 G:0 CDS - 1602/1896 534/631 synonymous_variant c.1602C>T p.Asp534Asp M5005_RS06360 cas8c type I-C CRISPR-associated protein Cas8c/Csd1 A24-292.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase A24-292.fasta NC_007297 1262625 snp G A A:20 G:0 CDS - 659/1485 220/494 missense_variant c.659C>T p.Thr220Ile M5005_RS06440 response regulator transcription factor A24-292.fasta NC_007297 1294671 del CT C C:18 CT:0 A24-292.fasta NC_007297 1305873 snp A G G:20 A:0 CDS - 2190/2385 730/794 synonymous_variant c.2190T>C p.Asp730Asp M5005_RS06645 primosomal protein N' A24-292.fasta NC_007297 1333075 snp C T T:20 C:0 CDS - 123/804 41/267 synonymous_variant c.123G>A p.Arg41Arg M5005_RS06765 amino acid ABC transporter permease A24-292.fasta NC_007297 1369715 snp C T T:20 C:0 CDS - 172/978 58/325 missense_variant c.172G>A p.Glu58Lys M5005_RS06925 lacD tagatose-bisphosphate aldolase A24-292.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB A24-292.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein A24-292.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein A24-292.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase A24-292.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein A24-292.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein A24-292.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr A24-292.fasta NC_007297 1535209 snp A G G:20 A:0 A24-292.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta A24-292.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase A24-292.fasta NC_007297 1630160 del CT C C:18 CT:0 A24-292.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase A24-292.fasta NC_007297 1654283 del GT G G:18 GT:0 A24-292.fasta NC_007297 1681235 snp T C C:20 T:0 CDS - 713/942 238/313 missense_variant c.713A>G p.Asp238Gly M5005_RS08470 sic complement-mediated lysis inhibitor Sic A24-292.fasta NC_007297 1681260 snp G A A:18 G:0 CDS - 688/942 230/313 missense_variant c.688C>T p.Pro230Ser M5005_RS08470 sic complement-mediated lysis inhibitor Sic A24-292.fasta NC_007297 1681273 del TCCATCAAAG T T:16 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic A24-292.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase A24-292.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase A24-292.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase A24-292.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha A24-292.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 A24-292.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein A24-292.fasta NC_007297 1835375 snp T C C:20 T:0 CDS - 13/765 5/254 missense_variant c.13A>G p.Asn5Asp M5005_RS09685 IS30 family transposase ERR1359469.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359469.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359469.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359469.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359469.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359469.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359469.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359469.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359469.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359469.fasta NC_007297 294358 del TAAAGA T T:18 TAAAGA:0 CDS + 1214/1502 405/499 frameshift_variant c.1214_1218delGAAAA p.Arg405fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359469.fasta NC_007297 315717 snp C T T:20 C:0 CDS + 299/462 100/153 missense_variant c.299C>T p.Ser100Phe M5005_RS01700 cbpB cyclic-di-AMP-binding protein CbpB ERR1359469.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359469.fasta NC_007297 343279 del TA T T:18 TA:0 ERR1359469.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359469.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359469.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359469.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359469.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359469.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359469.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359469.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359469.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359469.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359469.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359469.fasta NC_007297 695162 snp C T T:20 C:0 CDS + 148/744 50/247 stop_gained c.148C>T p.Arg50* M5005_RS03525 hypothetical protein ERR1359469.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359469.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359469.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359469.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359469.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359469.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359469.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359469.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359469.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359469.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359469.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359469.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359469.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359469.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359469.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359469.fasta NC_007297 1007612 snp C A A:20 C:0 CDS - 385/435 129/144 stop_gained c.385G>T p.Glu129* M5005_RS05095 ArpU family phage packaging/lysis transcriptional regulator ERR1359469.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359469.fasta NC_007297 1064592 snp C T T:10 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359469.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359469.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359469.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359469.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359469.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359469.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359469.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359469.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359469.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359469.fasta NC_007297 1294671 del CT C C:19 CT:0 ERR1359469.fasta NC_007297 1349210 snp G A A:20 G:0 CDS - 231/1500 77/499 synonymous_variant c.231C>T p.Gly77Gly M5005_RS06835 helix-turn-helix domain-containing protein ERR1359469.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359469.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359469.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359469.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359469.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359469.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359469.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359469.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359469.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359469.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359469.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359469.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359469.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359469.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:10 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359469.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359469.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359469.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359469.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359469.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR5853336.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR5853336.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR5853336.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha SRR5853336.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR5853336.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR5853336.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR5853336.fasta NC_007297 167489 snp C T T:20 C:0 SRR5853336.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR5853336.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR5853336.fasta NC_007297 293229 ins C CT CT:18 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR5853336.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR5853336.fasta NC_007297 343279 del TA T T:19 TA:0 SRR5853336.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR5853336.fasta NC_007297 528360 snp A T T:20 A:0 SRR5853336.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR5853336.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR5853336.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR5853336.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR5853336.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR5853336.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR5853336.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR5853336.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR5853336.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR5853336.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR5853336.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR5853336.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR5853336.fasta NC_007297 782255 snp A G G:20 A:0 SRR5853336.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR5853336.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR5853336.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR5853336.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR5853336.fasta NC_007297 875060 snp T C C:20 T:0 SRR5853336.fasta NC_007297 909756 del GT G G:19 GT:0 CDS - 882/1545 294/514 frameshift_variant c.882delA p.Lys294fs M5005_RS04590 ABC-F family ATP-binding cassette domain-containing protein SRR5853336.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR5853336.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR5853336.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR5853336.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR5853336.fasta NC_007297 957886 snp T C C:20 T:0 SRR5853336.fasta NC_007297 959346 snp C T T:20 C:0 SRR5853336.fasta NC_007297 983438 snp G C C:20 G:0 SRR5853336.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR5853336.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR5853336.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR5853336.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR5853336.fasta NC_007297 1122957 snp G T T:20 G:0 CDS - 122/1041 41/346 missense_variant c.122C>A p.Ala41Asp M5005_RS05675 holA DNA polymerase III subunit delta SRR5853336.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR5853336.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR5853336.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR5853336.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR5853336.fasta NC_007297 1238124 snp G A A:20 G:0 SRR5853336.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR5853336.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR5853336.fasta NC_007297 1294671 del CT C C:18 CT:0 SRR5853336.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR5853336.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR5853336.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR5853336.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR5853336.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR5853336.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR5853336.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR5853336.fasta NC_007297 1535209 snp A G G:20 A:0 SRR5853336.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR5853336.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR5853336.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR5853336.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR5853336.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR5853336.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR5853336.fasta NC_007297 1728631 snp T C C:20 T:0 SRR5853336.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR5853336.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR5853336.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR5853336.fasta NC_007297 1815391 snp C T T:20 C:0 CDS - 340/1026 114/341 missense_variant c.340G>A p.Gly114Ser M5005_RS09085 helix-turn-helix domain-containing protein SRR5853336.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR5853336.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169881.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169881.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169881.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169881.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169881.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169881.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169881.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169881.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169881.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169881.fasta NC_007297 294838 snp T C C:20 T:0 SRR21169881.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169881.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169881.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169881.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169881.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169881.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169881.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169881.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169881.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169881.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169881.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169881.fasta NC_007297 636132 snp G A A:20 G:0 CDS + 96/1194 32/397 synonymous_variant c.96G>A p.Gly32Gly M5005_RS03240 CapA family protein SRR21169881.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169881.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169881.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169881.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169881.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169881.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169881.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169881.fasta NC_007297 787690 snp A G G:20 A:0 CDS + 680/828 227/275 missense_variant c.680A>G p.Asp227Gly M5005_RS03955 PTS system mannose/fructose/sorbose family transporter subunit IID SRR21169881.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169881.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169881.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169881.fasta NC_007297 881630 snp A G G:20 A:0 CDS + 196/1347 66/448 missense_variant c.196A>G p.Thr66Ala M5005_RS04455 trmFO methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO SRR21169881.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169881.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169881.fasta NC_007297 939075 snp A T T:20 A:0 CDS - 2241/2538 747/845 missense_variant c.2241T>A p.Asn747Lys M5005_RS04730 M1 family metallopeptidase SRR21169881.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169881.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169881.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169881.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169881.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169881.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169881.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169881.fasta NC_007297 1067012 snp C A A:20 C:0 CDS - 105/1221 35/406 missense_variant c.105G>T p.Met35Ile M5005_RS05415 MFS transporter SRR21169881.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169881.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169881.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169881.fasta NC_007297 1208106 snp T C C:20 T:0 CDS - 631/1149 211/382 missense_variant c.631A>G p.Ile211Val M5005_RS06180 cell division protein FtsQ/DivIB SRR21169881.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169881.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169881.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169881.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169881.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169881.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169881.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169881.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169881.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169881.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169881.fasta NC_007297 1408387 snp A G G:20 A:0 CDS - 1272/1278 424/425 synonymous_variant c.1272T>C p.Tyr424Tyr M5005_RS07145 PBSX family phage terminase large subunit SRR21169881.fasta NC_007297 1420246 snp G A A:20 G:0 CDS - 289/1155 97/384 synonymous_variant c.289C>T p.Leu97Leu M5005_RS07205 DUF2800 domain-containing protein SRR21169881.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169881.fasta NC_007297 1456827 snp T A A:20 T:0 SRR21169881.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169881.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169881.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169881.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169881.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169881.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169881.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169881.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169881.fasta NC_007297 1674192 snp T C C:20 T:0 CDS - 1006/1068 336/355 missense_variant c.1006A>G p.Thr336Ala M5005_RS08455 YSIRK signal domain/LPXTG anchor domain surface protein SRR21169881.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169881.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:15 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169881.fasta NC_007297 1699787 snp C A A:20 C:0 CDS + 666/843 222/280 stop_gained c.666C>A p.Cys222* M5005_RS08550 ropB quorum-sensing system transcriptional regulator RopB/Rgg1 SRR21169881.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169881.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169881.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169881.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169881.fasta NC_007297 1810634 snp A T T:20 A:0 SRR21169881.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169881.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169892.fasta NC_007297 31040 snp T A A:20 T:0 SRR21169892.fasta NC_007297 31046 snp A T T:20 A:0 SRR21169892.fasta NC_007297 31059 snp T A A:20 T:0 SRR21169892.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169892.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169892.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169892.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169892.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169892.fasta NC_007297 135764 del CTAAAGCAGCACAAAGGTCTTT C C:16 CTAAAGCAGCACAAAGGTCTTT:0 CDS + 600/2022 200/673 disruptive_inframe_deletion c.600_620delAAAGCAGCACAAAGGTCTTTT p.Leu200_Leu206del M5005_RS00845 V-type ATP synthase subunit I SRR21169892.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169892.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169892.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169892.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169892.fasta NC_007297 343279 del TA T T:20 TA:0 SRR21169892.fasta NC_007297 362064 snp T C C:20 T:0 SRR21169892.fasta NC_007297 393201 snp A T T:20 A:0 CDS - 31/255 11/84 missense_variant c.31T>A p.Phe11Ile M5005_RS10020 hypothetical protein SRR21169892.fasta NC_007297 393241 snp T A A:20 T:0 SRR21169892.fasta NC_007297 444671 snp A T T:20 A:0 CDS + 88/1158 30/385 missense_variant c.88A>T p.Ile30Phe M5005_RS02365 nucleotide sugar dehydrogenase SRR21169892.fasta NC_007297 444685 snp A T T:20 A:0 CDS + 102/1158 34/385 missense_variant c.102A>T p.Lys34Asn M5005_RS02365 nucleotide sugar dehydrogenase SRR21169892.fasta NC_007297 447065 del AT A A:18 AT:0 SRR21169892.fasta NC_007297 484099 snp G A A:20 G:0 CDS - 21/480 7/159 synonymous_variant c.21C>T p.Leu7Leu M5005_RS02585 aminoacyl-tRNA deacylase SRR21169892.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169892.fasta NC_007297 522609 snp C T T:20 C:0 CDS + 652/765 218/254 missense_variant c.652C>T p.Arg218Cys M5005_RS02760 (S)-acetoin forming diacetyl reductase SRR21169892.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169892.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169892.fasta NC_007297 576801 snp G A A:20 G:0 CDS + 148/495 50/164 missense_variant c.148G>A p.Asp50Asn M5005_RS02970 atpF F0F1 ATP synthase subunit B SRR21169892.fasta NC_007297 590876 snp G A A:20 G:0 CDS + 189/669 63/222 synonymous_variant c.189G>A p.Gln63Gln M5005_RS03045 ABC transporter ATP-binding protein SRR21169892.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169892.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169892.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169892.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169892.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169892.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169892.fasta NC_007297 736742 snp C T T:20 C:0 CDS + 1054/1107 352/368 missense_variant c.1054C>T p.Pro352Ser M5005_RS03730 NAD(P)/FAD-dependent oxidoreductase SRR21169892.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169892.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169892.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169892.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169892.fasta NC_007297 792831 del CT C C:19 CT:0 CDS + 23/690 8/229 frameshift_variant c.23delT p.Phe8fs M5005_RS03985 YjjG family noncanonical pyrimidine nucleotidase SRR21169892.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169892.fasta NC_007297 937115 snp T C C:20 T:0 CDS - 651/1311 217/436 synonymous_variant c.651A>G p.Glu217Glu M5005_RS04720 sensor histidine kinase SRR21169892.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169892.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169892.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169892.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169892.fasta NC_007297 992082 snp G A A:20 G:0 CDS - 2687/3441 896/1146 missense_variant c.2687C>T p.Ala896Val M5005_RS05005 glucosaminidase domain-containing protein SRR21169892.fasta NC_007297 1008001 ins G GC GC:20 G:0 SRR21169892.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169892.fasta NC_007297 1058409 snp C T T:20 C:0 CDS - 463/1095 155/364 missense_variant c.463G>A p.Gly155Ser M5005_RS05370 DUF871 domain-containing protein SRR21169892.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169892.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169892.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169892.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169892.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169892.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169892.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169892.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169892.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169892.fasta NC_007297 1328056 snp G A A:20 G:0 CDS - 568/1455 190/484 missense_variant c.568C>T p.Arg190Cys M5005_RS06740 nicotinate phosphoribosyltransferase SRR21169892.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169892.fasta NC_007297 1396485 snp G A A:20 G:0 CDS - 4027/4383 1343/1460 synonymous_variant c.4027C>T p.Leu1343Leu M5005_RS07075 tape measure protein SRR21169892.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169892.fasta NC_007297 1416033 snp G A A:20 G:0 CDS - 408/2385 136/794 synonymous_variant c.408C>T p.Ile136Ile M5005_RS07185 phage/plasmid primase, P4 family SRR21169892.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169892.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169892.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169892.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169892.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169892.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169892.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169892.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169892.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:15 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169892.fasta NC_007297 1694174 del CT C C:18 CT:0 SRR21169892.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169892.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169892.fasta NC_007297 1752093 snp A G G:20 A:0 CDS - 1947/2025 649/674 synonymous_variant c.1947T>C p.Val649Val M5005_RS08775 treP PTS system trehalose-specific EIIBC component SRR21169892.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169892.fasta NC_007297 1815569 snp A G G:20 A:0 CDS - 162/1026 54/341 synonymous_variant c.162T>C p.Phe54Phe M5005_RS09085 helix-turn-helix domain-containing protein SRR21169892.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169980.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169980.fasta NC_007297 36169 snp C A A:20 C:0 CDS + 158/705 53/234 stop_gained c.158C>A p.Ser53* M5005_RS00265 purC phosphoribosylaminoimidazolesuccinocarboxamide synthase SRR21169980.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169980.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169980.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169980.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169980.fasta NC_007297 116281 snp A G G:20 A:0 CDS - 836/1494 279/497 missense_variant c.836T>C p.Ile279Thr M5005_RS00740 rofA transcriptional regulator RofA SRR21169980.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169980.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169980.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169980.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169980.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169980.fasta NC_007297 347948 snp A C C:20 A:0 CDS + 3204/4944 1068/1647 synonymous_variant c.3204A>C p.Ile1068Ile M5005_RS01880 scpC CXC chemokine-degrading serine protease SpyCEP SRR21169980.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169980.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169980.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169980.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169980.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169980.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169980.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169980.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169980.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169980.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169980.fasta NC_007297 686815 snp A G G:20 A:0 CDS + 390/1008 130/335 synonymous_variant c.390A>G p.Pro130Pro M5005_RS03480 phosphomevalonate kinase SRR21169980.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169980.fasta NC_007297 695440 snp G A A:20 G:0 CDS + 426/744 142/247 synonymous_variant c.426G>A p.Glu142Glu M5005_RS03525 hypothetical protein SRR21169980.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169980.fasta NC_007297 739706 snp G A A:20 G:0 SRR21169980.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169980.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169980.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169980.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169980.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169980.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169980.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169980.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169980.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169980.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169980.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169980.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169980.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169980.fasta NC_007297 960815 ins G GT GT:20 G:0 CDS - 154/189 52/62 frameshift_variant c.154dupA p.Thr52fs M5005_RS04845 DUF2273 domain-containing protein SRR21169980.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169980.fasta NC_007297 984243 snp T A A:20 T:0 SRR21169980.fasta NC_007297 994808 snp G A A:20 G:0 CDS - 1446/1485 482/494 synonymous_variant c.1446C>T p.Asn482Asn M5005_RS05010 distal tail protein Dit SRR21169980.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169980.fasta NC_007297 1064592 snp C T T:16 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169980.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169980.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169980.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169980.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169980.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169980.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169980.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169980.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169980.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169980.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169980.fasta NC_007297 1350795 del GT G G:20 GT:0 SRR21169980.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169980.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169980.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169980.fasta NC_007297 1416434 snp G A A:20 G:0 CDS - 7/2385 3/794 stop_gained c.7C>T p.Gln3* M5005_RS07185 phage/plasmid primase, P4 family SRR21169980.fasta NC_007297 1445049 snp G A A:20 G:0 CDS - 1011/1233 337/410 synonymous_variant c.1011C>T p.His337His M5005_RS07375 fabF beta-ketoacyl-ACP synthase II SRR21169980.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169980.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169980.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169980.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169980.fasta NC_007297 1500387 snp G A A:20 G:0 CDS - 1098/2988 366/995 synonymous_variant c.1098C>T p.Asp366Asp M5005_RS07620 endo-beta-N-acetylglucosaminidase EndoS SRR21169980.fasta NC_007297 1514097 snp G T T:20 G:0 CDS + 383/657 128/218 missense_variant c.383G>T p.Gly128Val M5005_RS07675 DUF1129 domain-containing protein SRR21169980.fasta NC_007297 1523387 snp C T T:20 C:0 CDS + 774/903 258/300 synonymous_variant c.774C>T p.Ser258Ser M5005_RS07735 rnhC ribonuclease HIII SRR21169980.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169980.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169980.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169980.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169980.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169980.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169980.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169980.fasta NC_007297 1718925 snp G T T:20 G:0 CDS + 663/1497 221/498 missense_variant c.663G>T p.Lys221Asn M5005_RS08645 C69 family dipeptidase SRR21169980.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169980.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169980.fasta NC_007297 1735734 snp C T T:20 C:0 CDS + 256/627 86/208 synonymous_variant c.256C>T p.Leu86Leu M5005_RS08720 cyclodeaminase/cyclohydrolase family protein SRR21169980.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169980.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169980.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169879.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169879.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169879.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169879.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169879.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169879.fasta NC_007297 126007 snp C T T:20 C:0 CDS - 661/666 221/221 missense_variant c.661G>A p.Glu221Lys M5005_RS00790 hypothetical protein SRR21169879.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169879.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169879.fasta NC_007297 253420 snp A G G:20 A:0 CDS + 354/1419 118/472 synonymous_variant c.354A>G p.Ala118Ala M5005_RS01385 sufB Fe-S cluster assembly protein SufB SRR21169879.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169879.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169879.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169879.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169879.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169879.fasta NC_007297 528231 snp A G G:20 A:0 SRR21169879.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169879.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169879.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169879.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169879.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169879.fasta NC_007297 595011 snp G A A:20 G:0 CDS + 2486/3216 829/1071 missense_variant c.2486G>A p.Ser829Asn M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169879.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169879.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169879.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169879.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169879.fasta NC_007297 681603 snp A G G:20 A:0 SRR21169879.fasta NC_007297 684809 snp A G G:20 A:0 CDS + 181/879 61/292 missense_variant c.181A>G p.Ile61Val M5005_RS03470 mvk mevalonate kinase SRR21169879.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169879.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169879.fasta NC_007297 741899 snp C A A:20 C:0 CDS + 375/1248 125/415 synonymous_variant c.375C>A p.Gly125Gly M5005_RS03760 tetratricopeptide repeat protein SRR21169879.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169879.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169879.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169879.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169879.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169879.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169879.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169879.fasta NC_007297 854429 snp C T T:20 C:0 CDS + 145/840 49/279 missense_variant c.145C>T p.Pro49Ser M5005_RS04325 prmC peptide chain release factor N(5)-glutamine methyltransferase SRR21169879.fasta NC_007297 899397 snp G C C:20 G:0 CDS - 834/1071 278/356 synonymous_variant c.834C>G p.Gly278Gly M5005_RS04550 xerS tyrosine recombinase XerS SRR21169879.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169879.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169879.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169879.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169879.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169879.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169879.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169879.fasta NC_007297 989541 snp T C C:20 T:0 CDS - 1783/1863 595/620 missense_variant c.1783A>G p.Asn595Asp M5005_RS05000 DUF859 family phage minor structural protein SRR21169879.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169879.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169879.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169879.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169879.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169879.fasta NC_007297 1156393 snp T C C:20 T:0 CDS - 366/594 122/197 synonymous_variant c.366A>G p.Glu122Glu M5005_RS05845 phage tail tube protein SRR21169879.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169879.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169879.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169879.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169879.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169879.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169879.fasta NC_007297 1263296 snp C T T:20 C:0 CDS - 1712/1725 571/574 missense_variant c.1712G>A p.Arg571Lys M5005_RS06445 sensor histidine kinase SRR21169879.fasta NC_007297 1277660 snp C T T:20 C:0 CDS + 971/2706 324/901 missense_variant c.971C>T p.Ala324Val M5005_RS06495 alpha-mannosidase SRR21169879.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169879.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169879.fasta NC_007297 1391003 snp C A A:20 C:0 CDS - 583/1908 195/635 missense_variant c.583G>T p.Ala195Ser M5005_RS07050 gp58-like family protein SRR21169879.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169879.fasta NC_007297 1404939 complex TTTA ATTT ATTT:19 TTTA:0 SRR21169879.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169879.fasta NC_007297 1408878 ins C CA CA:18 C:0 CDS - 780/1278 260/425 frameshift_variant c.780dupT p.Gly261fs M5005_RS07145 PBSX family phage terminase large subunit SRR21169879.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169879.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169879.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169879.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169879.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169879.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169879.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169879.fasta NC_007297 1627308 snp T C C:20 T:0 CDS - 2603/4398 868/1465 missense_variant c.2603A>G p.Lys868Arg M5005_RS08260 PolC-type DNA polymerase III SRR21169879.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169879.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169879.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169879.fasta NC_007297 1681672 snp A T T:17 A:0 CDS - 276/942 92/313 missense_variant c.276T>A p.Asp92Glu M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169879.fasta NC_007297 1699284 snp G A A:20 G:0 CDS + 163/843 55/280 missense_variant c.163G>A p.Val55Ile M5005_RS08550 ropB quorum-sensing system transcriptional regulator RopB/Rgg1 SRR21169879.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169879.fasta NC_007297 1709601 snp G T T:20 G:0 CDS - 66/981 22/326 missense_variant c.66C>A p.Ser22Arg M5005_RS08595 sugar-binding transcriptional regulator SRR21169879.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169879.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169879.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169879.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:9 A:0 SRR21169879.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169793.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169793.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169793.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169793.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169793.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169793.fasta NC_007297 126007 snp C T T:20 C:0 CDS - 661/666 221/221 missense_variant c.661G>A p.Glu221Lys M5005_RS00790 hypothetical protein SRR21169793.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169793.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169793.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169793.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169793.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169793.fasta NC_007297 343279 del TA T T:18 TA:0 SRR21169793.fasta NC_007297 497539 snp G A A:20 G:0 CDS - 151/1236 51/411 synonymous_variant c.151C>T p.Leu51Leu M5005_RS02640 aminoacyltransferase SRR21169793.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169793.fasta NC_007297 528231 snp A G G:20 A:0 SRR21169793.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169793.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169793.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169793.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169793.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169793.fasta NC_007297 595011 snp G A A:20 G:0 CDS + 2486/3216 829/1071 missense_variant c.2486G>A p.Ser829Asn M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169793.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169793.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169793.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169793.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169793.fasta NC_007297 681603 snp A G G:20 A:0 SRR21169793.fasta NC_007297 684809 snp A G G:20 A:0 CDS + 181/879 61/292 missense_variant c.181A>G p.Ile61Val M5005_RS03470 mvk mevalonate kinase SRR21169793.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169793.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169793.fasta NC_007297 741899 snp C A A:20 C:0 CDS + 375/1248 125/415 synonymous_variant c.375C>A p.Gly125Gly M5005_RS03760 tetratricopeptide repeat protein SRR21169793.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169793.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169793.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169793.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169793.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169793.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169793.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169793.fasta NC_007297 854429 snp C T T:20 C:0 CDS + 145/840 49/279 missense_variant c.145C>T p.Pro49Ser M5005_RS04325 prmC peptide chain release factor N(5)-glutamine methyltransferase SRR21169793.fasta NC_007297 899397 snp G C C:20 G:0 CDS - 834/1071 278/356 synonymous_variant c.834C>G p.Gly278Gly M5005_RS04550 xerS tyrosine recombinase XerS SRR21169793.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169793.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169793.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169793.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169793.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169793.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169793.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169793.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169793.fasta NC_007297 1064592 snp C T T:17 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169793.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169793.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169793.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169793.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169793.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169793.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169793.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169793.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169793.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169793.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169793.fasta NC_007297 1350795 del GT G G:20 GT:0 SRR21169793.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169793.fasta NC_007297 1391003 snp C A A:20 C:0 CDS - 583/1908 195/635 missense_variant c.583G>T p.Ala195Ser M5005_RS07050 gp58-like family protein SRR21169793.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169793.fasta NC_007297 1404939 complex TTTA ATTT ATTT:19 TTTA:0 SRR21169793.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169793.fasta NC_007297 1408878 ins C CA CA:18 C:0 CDS - 780/1278 260/425 frameshift_variant c.780dupT p.Gly261fs M5005_RS07145 PBSX family phage terminase large subunit SRR21169793.fasta NC_007297 1438144 snp T C C:20 T:0 CDS + 552/912 184/303 synonymous_variant c.552T>C p.Gly184Gly M5005_RS07335 PTS system mannose/fructose/sorbose family transporter subunit IID SRR21169793.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169793.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169793.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169793.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169793.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169793.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169793.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169793.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169793.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169793.fasta NC_007297 1681273 del TCCATCAAAG T T:15 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169793.fasta NC_007297 1681672 snp A T T:21 A:0 CDS - 276/942 92/313 missense_variant c.276T>A p.Asp92Glu M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169793.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169793.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169793.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169793.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169793.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169793.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169798.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169798.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169798.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169798.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169798.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169798.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169798.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169798.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169798.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169798.fasta NC_007297 294838 snp T C C:20 T:0 SRR21169798.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169798.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169798.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169798.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169798.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169798.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169798.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169798.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169798.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169798.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169798.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169798.fasta NC_007297 636132 snp G A A:20 G:0 CDS + 96/1194 32/397 synonymous_variant c.96G>A p.Gly32Gly M5005_RS03240 CapA family protein SRR21169798.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169798.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169798.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169798.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169798.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169798.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169798.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169798.fasta NC_007297 787690 snp A G G:20 A:0 CDS + 680/828 227/275 missense_variant c.680A>G p.Asp227Gly M5005_RS03955 PTS system mannose/fructose/sorbose family transporter subunit IID SRR21169798.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169798.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169798.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169798.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169798.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169798.fasta NC_007297 939075 snp A T T:20 A:0 CDS - 2241/2538 747/845 missense_variant c.2241T>A p.Asn747Lys M5005_RS04730 M1 family metallopeptidase SRR21169798.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169798.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169798.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169798.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169798.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169798.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169798.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169798.fasta NC_007297 1067012 snp C A A:20 C:0 CDS - 105/1221 35/406 missense_variant c.105G>T p.Met35Ile M5005_RS05415 MFS transporter SRR21169798.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169798.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169798.fasta NC_007297 1127716 snp G A A:20 G:0 CDS + 624/777 208/258 missense_variant c.624G>A p.Met208Ile M5005_RS05695 tRNA1(Val) (adenine(37)-N6)-methyltransferase SRR21169798.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169798.fasta NC_007297 1208106 snp T C C:20 T:0 CDS - 631/1149 211/382 missense_variant c.631A>G p.Ile211Val M5005_RS06180 cell division protein FtsQ/DivIB SRR21169798.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169798.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169798.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169798.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169798.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169798.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169798.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169798.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169798.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169798.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169798.fasta NC_007297 1408387 snp A G G:20 A:0 CDS - 1272/1278 424/425 synonymous_variant c.1272T>C p.Tyr424Tyr M5005_RS07145 PBSX family phage terminase large subunit SRR21169798.fasta NC_007297 1420246 snp G A A:20 G:0 CDS - 289/1155 97/384 synonymous_variant c.289C>T p.Leu97Leu M5005_RS07205 DUF2800 domain-containing protein SRR21169798.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169798.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169798.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169798.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169798.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169798.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169798.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169798.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169798.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169798.fasta NC_007297 1681273 del TCCATCAAAG T T:15 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169798.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:18 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169798.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169798.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169798.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169798.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169798.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169798.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169816.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169816.fasta NC_007297 56102 snp G T T:20 G:0 CDS + 46/402 16/133 missense_variant c.46G>T p.Ala16Ser M5005_RS00340 MORN repeat-containing protein SRR21169816.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169816.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169816.fasta NC_007297 188153 snp C A A:20 C:0 CDS + 525/780 175/259 missense_variant c.525C>A p.Phe175Leu M5005_RS01085 MBL fold metallo-hydrolase SRR21169816.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169816.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169816.fasta NC_007297 329574 snp C T T:20 C:0 CDS - 613/933 205/310 missense_variant c.613G>A p.Gly205Arg M5005_RS01785 iron-hydroxamate ABC transporter substrate-binding protein SRR21169816.fasta NC_007297 335934 snp T C C:20 T:0 CDS + 507/591 169/196 synonymous_variant c.507T>C p.Ala169Ala M5005_RS01810 ATP-dependent Clp protease proteolytic subunit SRR21169816.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169816.fasta NC_007297 421430 snp A G G:20 A:0 CDS + 35/993 12/330 missense_variant c.35A>G p.Asn12Ser M5005_RS02265 ABC transporter ATP-binding protein SRR21169816.fasta NC_007297 445837 del GA G G:19 GA:0 CDS + 20/1209 7/402 frameshift_variant c.20delA p.Asn7fs M5005_RS02370 MFS transporter SRR21169816.fasta NC_007297 511352 snp C A A:20 C:0 CDS - 403/438 135/145 missense_variant c.403G>T p.Asp135Tyr M5005_RS02705 PTS sugar transporter subunit IIA SRR21169816.fasta NC_007297 513719 snp C A A:20 C:0 CDS + 141/1002 47/333 synonymous_variant c.141C>A p.Gly47Gly M5005_RS02720 sugar kinase SRR21169816.fasta NC_007297 530171 snp A C C:20 A:0 CDS + 645/978 215/325 synonymous_variant c.645A>C p.Ala215Ala M5005_RS02785 YvcK family protein SRR21169816.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169816.fasta NC_007297 556572 snp C T T:20 C:0 CDS + 3880/6180 1294/2059 stop_gained c.3880C>T p.Gln1294* M5005_RS02890 DUF1542 domain-containing protein SRR21169816.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169816.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169816.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169816.fasta NC_007297 617062 snp A T T:10 A:0 CDS + 644/1287 215/428 missense_variant c.644A>T p.Glu215Val M5005_RS03145 lipopolysaccharide biosynthesis protein SRR21169816.fasta NC_007297 650214 snp C T T:20 C:0 CDS + 7/711 3/236 missense_variant c.7C>T p.His3Tyr M5005_RS03305 ABC transporter ATP-binding protein SRR21169816.fasta NC_007297 650271 snp G A A:20 G:0 CDS + 64/711 22/236 missense_variant c.64G>A p.Asp22Asn M5005_RS03305 ABC transporter ATP-binding protein SRR21169816.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169816.fasta NC_007297 702209 snp C T T:20 C:0 CDS + 30/714 10/237 synonymous_variant c.30C>T p.Gly10Gly M5005_RS03555 deoD purine-nucleoside phosphorylase SRR21169816.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169816.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169816.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169816.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169816.fasta NC_007297 817232 snp A G G:20 A:0 CDS + 191/801 64/266 missense_variant c.191A>G p.Gln64Arg M5005_RS04130 folP dihydropteroate synthase SRR21169816.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169816.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169816.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169816.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169816.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169816.fasta NC_007297 969044 snp T A A:20 T:0 SRR21169816.fasta NC_007297 969091 snp T A A:20 T:0 SRR21169816.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169816.fasta NC_007297 1064592 snp C T T:17 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169816.fasta NC_007297 1079999 snp T A A:20 T:0 SRR21169816.fasta NC_007297 1080008 snp T A A:20 T:0 SRR21169816.fasta NC_007297 1080014 snp T A A:20 T:0 SRR21169816.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169816.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169816.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169816.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169816.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169816.fasta NC_007297 1246683 del GT G G:20 GT:0 CDS - 1546/2409 516/802 frameshift_variant c.1546delA p.Thr516fs M5005_RS06370 CRISPR-associated helicase/endonuclease Cas3 SRR21169816.fasta NC_007297 1294106 ins A AC AC:19 A:0 CDS - 551/1326 184/441 frameshift_variant c.551_552insG p.Ile184fs M5005_RS06585 DEAD/DEAH box helicase SRR21169816.fasta NC_007297 1385762 snp T A A:20 T:0 SRR21169816.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169816.fasta NC_007297 1398473 snp G A A:20 G:0 CDS - 2039/4383 680/1460 missense_variant c.2039C>T p.Thr680Ile M5005_RS07075 tape measure protein SRR21169816.fasta NC_007297 1422483 snp G A A:20 G:0 CDS - 86/216 29/71 missense_variant c.86C>T p.Ala29Val M5005_RS07235 hypothetical protein SRR21169816.fasta NC_007297 1451662 del TA T T:20 TA:0 SRR21169816.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169816.fasta NC_007297 1462005 snp A G G:20 A:0 CDS - 873/1467 291/488 synonymous_variant c.873T>C p.Thr291Thr M5005_RS07465 gatA Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA SRR21169816.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169816.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169816.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169816.fasta NC_007297 1602786 del AT A A:20 AT:0 SRR21169816.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169816.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169816.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169816.fasta NC_007297 1681619 snp G A A:20 G:0 CDS - 329/942 110/313 missense_variant c.329C>T p.Thr110Met M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169816.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169816.fasta NC_007297 1754171 snp T C C:20 T:0 SRR21169816.fasta NC_007297 1768820 ins C CT CT:19 C:0 CDS - 371/561 124/186 frameshift_variant c.371dupA p.Pro125fs M5005_RS08855 DNA-3-methyladenine glycosylase I SRR21169816.fasta NC_007297 1807161 snp C A A:20 C:0 SRR21169816.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359419.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359419.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359419.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359419.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359419.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359419.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359419.fasta NC_007297 192983 snp C T T:20 C:0 CDS + 655/1350 219/449 missense_variant c.655C>T p.Pro219Ser M5005_RS01105 glucose-6-phosphate isomerase ERR1359419.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359419.fasta NC_007297 258743 snp G A A:20 G:0 CDS + 1195/1971 399/656 missense_variant c.1195G>A p.Val399Ile M5005_RS01400 peptide ABC transporter substrate-binding protein ERR1359419.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359419.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359419.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359419.fasta NC_007297 343279 del TA T T:18 TA:0 ERR1359419.fasta NC_007297 439106 snp C T T:20 C:0 CDS + 134/735 45/244 missense_variant c.134C>T p.Ser45Phe M5005_RS02340 cofE coenzyme F420-0:L-glutamate ligase ERR1359419.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359419.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359419.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359419.fasta NC_007297 550345 snp G T T:20 G:0 CDS - 70/1030 24/342 missense_variant c.70C>A p.Pro24Thr M5005_RS02875 transposase ERR1359419.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359419.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359419.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359419.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359419.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359419.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359419.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359419.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359419.fasta NC_007297 726312 snp C T T:20 C:0 CDS + 67/1239 23/412 missense_variant c.67C>T p.His23Tyr M5005_RS03680 hflX GTPase HflX ERR1359419.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359419.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359419.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359419.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359419.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359419.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359419.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359419.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359419.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359419.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359419.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359419.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359419.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359419.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359419.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359419.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359419.fasta NC_007297 1049930 snp A C C:20 A:0 CDS + 140/2175 47/724 missense_variant c.140A>C p.Tyr47Ser M5005_RS05335 ABC transporter substrate-binding protein/permease ERR1359419.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359419.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359419.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359419.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359419.fasta NC_007297 1171694 del GTTATTTAGTAT G G:16 GTTATTTAGTAT:0 ERR1359419.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359419.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359419.fasta NC_007297 1228102 snp T C C:20 T:0 ERR1359419.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359419.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359419.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359419.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359419.fasta NC_007297 1294671 del CT C C:19 CT:0 ERR1359419.fasta NC_007297 1349210 snp G A A:20 G:0 CDS - 231/1500 77/499 synonymous_variant c.231C>T p.Gly77Gly M5005_RS06835 helix-turn-helix domain-containing protein ERR1359419.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359419.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359419.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359419.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359419.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359419.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359419.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359419.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359419.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359419.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359419.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359419.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359419.fasta NC_007297 1681273 del TCCATCAAAG T T:12 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359419.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:17 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359419.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359419.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359419.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359419.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359419.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359419.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR6835027.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR6835027.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR6835027.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha SRR6835027.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR6835027.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR6835027.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR6835027.fasta NC_007297 167489 snp C T T:20 C:0 SRR6835027.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR6835027.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR6835027.fasta NC_007297 293229 ins C CT CT:18 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR6835027.fasta NC_007297 316755 snp T C C:20 T:0 CDS + 133/702 45/233 synonymous_variant c.133T>C p.Leu45Leu M5005_RS01710 segregation/condensation protein A SRR6835027.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR6835027.fasta NC_007297 343279 del TA T T:19 TA:0 SRR6835027.fasta NC_007297 511831 snp A T T:20 A:0 SRR6835027.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR6835027.fasta NC_007297 528360 snp A T T:20 A:0 SRR6835027.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR6835027.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR6835027.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR6835027.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR6835027.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR6835027.fasta NC_007297 604678 snp C T T:20 C:0 CDS + 251/339 84/112 missense_variant c.251C>T p.Thr84Ile M5005_RS03090 metal-sulfur cluster assembly factor SRR6835027.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR6835027.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR6835027.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR6835027.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR6835027.fasta NC_007297 727443 del TC T T:20 TC:0 CDS + 1202/1239 401/412 frameshift_variant c.1202delC p.Pro401fs M5005_RS03680 hflX GTPase HflX SRR6835027.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR6835027.fasta NC_007297 757387 snp G T T:20 G:0 CDS + 260/1764 87/587 missense_variant c.260G>T p.Ser87Ile M5005_RS03825 lpdA dihydrolipoyl dehydrogenase SRR6835027.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR6835027.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR6835027.fasta NC_007297 782255 snp A G G:20 A:0 SRR6835027.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR6835027.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR6835027.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR6835027.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR6835027.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR6835027.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR6835027.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR6835027.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR6835027.fasta NC_007297 957886 snp T C C:20 T:0 SRR6835027.fasta NC_007297 959346 snp C T T:20 C:0 SRR6835027.fasta NC_007297 983438 snp G C C:20 G:0 SRR6835027.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR6835027.fasta NC_007297 1062837 snp C T T:20 C:0 CDS - 94/129 32/42 missense_variant c.94G>A p.Gly32Arg M5005_RS09505 DUF4044 domain-containing protein SRR6835027.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR6835027.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR6835027.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR6835027.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR6835027.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR6835027.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR6835027.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR6835027.fasta NC_007297 1238124 snp G A A:20 G:0 SRR6835027.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR6835027.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR6835027.fasta NC_007297 1294671 del CT C C:18 CT:0 SRR6835027.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR6835027.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR6835027.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR6835027.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR6835027.fasta NC_007297 1452571 del ACCACCAAAGCCACCTCCGTCAAAACCACCAAAGCCGCCTGCTCCG A A:12 ACCACCAAAGCCACCTCCGTCAAAACCACCAAAGCCGCCTGCTCCG:0 CDS - 302/1158 86/385 disruptive_inframe_deletion c.258_302delCGGAGCAGGCGGCTTTGGTGGTTTTGACGGAGGTGGCTTTGGTGG p.Gly87_Gly101del M5005_RS07415 dnaJ molecular chaperone DnaJ SRR6835027.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR6835027.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR6835027.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR6835027.fasta NC_007297 1494220 snp G A A:20 G:0 CDS - 632/2520 211/839 missense_variant c.632C>T p.Ser211Leu M5005_RS07590 secA preprotein translocase subunit SecA SRR6835027.fasta NC_007297 1535209 snp A G G:20 A:0 SRR6835027.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR6835027.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR6835027.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR6835027.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR6835027.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR6835027.fasta NC_007297 1681641 del TTTTATCGCTAGACCAGTCATCTTCAGGCCAATCTTCAGGCCATTCTTC T T:10 TTTTATCGCTAGACCAGTCATCTTCAGGCCAATCTTCAGGCCATTCTTC:0 CDS - 306/942 87/313 conservative_inframe_deletion c.259_306delGAAGAATGGCCTGAAGATTGGCCTGAAGATGACTGGTCTAGCGATAAA p.Glu87_Lys102del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR6835027.fasta NC_007297 1681713 snp T G G:14 T:0 CDS - 235/942 79/313 missense_variant c.235A>C p.Lys79Gln M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR6835027.fasta NC_007297 1699626 snp G T T:20 G:0 CDS + 505/843 169/280 missense_variant c.505G>T p.Val169Phe M5005_RS08550 ropB quorum-sensing system transcriptional regulator RopB/Rgg1 SRR6835027.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR6835027.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR6835027.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR6835027.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR6835027.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR6835027.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169825.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169825.fasta NC_007297 35914 snp C T T:20 C:0 SRR21169825.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169825.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169825.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169825.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169825.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169825.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169825.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169825.fasta NC_007297 307585 snp C G G:20 C:0 SRR21169825.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169825.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169825.fasta NC_007297 348561 snp A G G:20 A:0 CDS + 3817/4944 1273/1647 missense_variant c.3817A>G p.Lys1273Glu M5005_RS01880 scpC CXC chemokine-degrading serine protease SpyCEP SRR21169825.fasta NC_007297 447065 del AT A A:19 AT:0 SRR21169825.fasta NC_007297 484099 snp G A A:20 G:0 CDS - 21/480 7/159 synonymous_variant c.21C>T p.Leu7Leu M5005_RS02585 aminoacyl-tRNA deacylase SRR21169825.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169825.fasta NC_007297 522609 snp C T T:20 C:0 CDS + 652/765 218/254 missense_variant c.652C>T p.Arg218Cys M5005_RS02760 (S)-acetoin forming diacetyl reductase SRR21169825.fasta NC_007297 526253 snp C T T:20 C:0 CDS + 588/1194 196/397 synonymous_variant c.588C>T p.His196His M5005_RS02770 pyridoxal phosphate-dependent aminotransferase SRR21169825.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169825.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169825.fasta NC_007297 576801 snp G A A:20 G:0 CDS + 148/495 50/164 missense_variant c.148G>A p.Asp50Asn M5005_RS02970 atpF F0F1 ATP synthase subunit B SRR21169825.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169825.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169825.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169825.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169825.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169825.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169825.fasta NC_007297 736742 snp C T T:20 C:0 CDS + 1054/1107 352/368 missense_variant c.1054C>T p.Pro352Ser M5005_RS03730 NAD(P)/FAD-dependent oxidoreductase SRR21169825.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169825.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169825.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169825.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169825.fasta NC_007297 792831 del CT C C:19 CT:0 CDS + 23/690 8/229 frameshift_variant c.23delT p.Phe8fs M5005_RS03985 YjjG family noncanonical pyrimidine nucleotidase SRR21169825.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169825.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169825.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169825.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169825.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169825.fasta NC_007297 960745 snp G A A:20 G:0 CDS - 24/540 8/179 synonymous_variant c.24C>T p.Asn8Asn M5005_RS04840 Asp23/Gls24 family envelope stress response protein SRR21169825.fasta NC_007297 1008001 ins G GC GC:18 G:0 SRR21169825.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169825.fasta NC_007297 1058409 snp C T T:20 C:0 CDS - 463/1095 155/364 missense_variant c.463G>A p.Gly155Ser M5005_RS05370 DUF871 domain-containing protein SRR21169825.fasta NC_007297 1064592 snp C T T:16 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169825.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169825.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169825.fasta NC_007297 1122154 snp T C C:20 T:0 CDS - 925/1041 309/346 missense_variant c.925A>G p.Thr309Ala M5005_RS05675 holA DNA polymerase III subunit delta SRR21169825.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169825.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169825.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169825.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169825.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169825.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169825.fasta NC_007297 1261920 snp T G G:20 T:0 CDS - 1364/1485 455/494 missense_variant c.1364A>C p.Glu455Ala M5005_RS06440 response regulator transcription factor SRR21169825.fasta NC_007297 1345678 snp G A A:20 G:0 CDS - 1276/1986 426/661 missense_variant c.1276C>T p.Arg426Cys M5005_RS06825 tkt transketolase SRR21169825.fasta NC_007297 1367282 snp G A A:20 G:0 CDS - 812/825 271/274 missense_variant c.812C>T p.Ala271Val M5005_RS06915 Cof-type HAD-IIB family hydrolase SRR21169825.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169825.fasta NC_007297 1396485 snp G A A:20 G:0 CDS - 4027/4383 1343/1460 synonymous_variant c.4027C>T p.Leu1343Leu M5005_RS07075 tape measure protein SRR21169825.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169825.fasta NC_007297 1416033 snp G A A:20 G:0 CDS - 408/2385 136/794 synonymous_variant c.408C>T p.Ile136Ile M5005_RS07185 phage/plasmid primase, P4 family SRR21169825.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169825.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169825.fasta NC_007297 1459679 snp C T T:20 C:0 SRR21169825.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169825.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169825.fasta NC_007297 1550088 snp A G G:20 A:0 CDS - 216/1029 72/342 synonymous_variant c.216T>C p.Ser72Ser M5005_RS07860 tsaD tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD SRR21169825.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169825.fasta NC_007297 1593538 ins G GC GC:18 G:0 CDS - 168/480 56/159 frameshift_variant c.168dupG p.Gln57fs M5005_RS08075 ABC transporter ATP-binding protein SRR21169825.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169825.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169825.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169825.fasta NC_007297 1694174 del CT C C:19 CT:0 SRR21169825.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169825.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169825.fasta NC_007297 1752093 snp A G G:20 A:0 CDS - 1947/2025 649/674 synonymous_variant c.1947T>C p.Val649Val M5005_RS08775 treP PTS system trehalose-specific EIIBC component SRR21169825.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169825.fasta NC_007297 1815569 snp A G G:20 A:0 CDS - 162/1026 54/341 synonymous_variant c.162T>C p.Phe54Phe M5005_RS09085 helix-turn-helix domain-containing protein SRR21169825.fasta NC_007297 1818655 snp T A A:12 T:0 SRR21169825.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:9 A:0 ERR1359732.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359732.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359732.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359732.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359732.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359732.fasta NC_007297 135764 del CTAAAGCAGCACAAAGGTCTTT C C:15 CTAAAGCAGCACAAAGGTCTTT:1 CDS + 600/2022 200/673 disruptive_inframe_deletion c.600_620delAAAGCAGCACAAAGGTCTTTT p.Leu200_Leu206del M5005_RS00845 V-type ATP synthase subunit I ERR1359732.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359732.fasta NC_007297 264213 del GT G G:19 GT:0 ERR1359732.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359732.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359732.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359732.fasta NC_007297 343279 del TA T T:19 TA:0 ERR1359732.fasta NC_007297 353077 snp G A A:20 G:0 CDS + 1669/1998 557/665 missense_variant c.1669G>A p.Val557Ile M5005_RS01895 metG methionine--tRNA ligase ERR1359732.fasta NC_007297 372008 snp A G G:20 A:0 ERR1359732.fasta NC_007297 447065 del AT A A:19 AT:0 ERR1359732.fasta NC_007297 484099 snp G A A:20 G:0 CDS - 21/480 7/159 synonymous_variant c.21C>T p.Leu7Leu M5005_RS02585 aminoacyl-tRNA deacylase ERR1359732.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359732.fasta NC_007297 522609 snp C T T:20 C:0 CDS + 652/765 218/254 missense_variant c.652C>T p.Arg218Cys M5005_RS02760 (S)-acetoin forming diacetyl reductase ERR1359732.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359732.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359732.fasta NC_007297 576801 snp G A A:20 G:0 CDS + 148/495 50/164 missense_variant c.148G>A p.Asp50Asn M5005_RS02970 atpF F0F1 ATP synthase subunit B ERR1359732.fasta NC_007297 582081 snp C T T:20 C:0 CDS + 402/417 134/138 synonymous_variant c.402C>T p.Asn134Asn M5005_RS02995 F0F1 ATP synthase subunit epsilon ERR1359732.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359732.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359732.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359732.fasta NC_007297 621587 snp C T T:20 C:0 CDS + 327/477 109/158 synonymous_variant c.327C>T p.Gly109Gly M5005_RS03165 SAG1386/EF1546 family surface-associated protein ERR1359732.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359732.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359732.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359732.fasta NC_007297 736742 snp C T T:20 C:0 CDS + 1054/1107 352/368 missense_variant c.1054C>T p.Pro352Ser M5005_RS03730 NAD(P)/FAD-dependent oxidoreductase ERR1359732.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359732.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359732.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359732.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359732.fasta NC_007297 792831 del CT C C:18 CT:0 CDS + 23/690 8/229 frameshift_variant c.23delT p.Phe8fs M5005_RS03985 YjjG family noncanonical pyrimidine nucleotidase ERR1359732.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359732.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359732.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359732.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359732.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359732.fasta NC_007297 973937 snp A G G:20 A:0 ERR1359732.fasta NC_007297 975984 snp G A A:20 G:0 CDS - 329/1503 110/500 missense_variant c.329C>T p.Thr110Ile M5005_RS04910 pyk pyruvate kinase ERR1359732.fasta NC_007297 1008001 ins G GC GC:19 G:0 ERR1359732.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359732.fasta NC_007297 1058409 snp C T T:20 C:0 CDS - 463/1095 155/364 missense_variant c.463G>A p.Gly155Ser M5005_RS05370 DUF871 domain-containing protein ERR1359732.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359732.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359732.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359732.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359732.fasta NC_007297 1197583 snp T C C:20 T:0 CDS + 222/456 74/151 synonymous_variant c.222T>C p.Ile74Ile M5005_RS06130 NUDIX hydrolase ERR1359732.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359732.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359732.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359732.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359732.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359732.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359732.fasta NC_007297 1396485 snp G A A:20 G:0 CDS - 4027/4383 1343/1460 synonymous_variant c.4027C>T p.Leu1343Leu M5005_RS07075 tape measure protein ERR1359732.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359732.fasta NC_007297 1416033 snp G A A:20 G:0 CDS - 408/2385 136/794 synonymous_variant c.408C>T p.Ile136Ile M5005_RS07185 phage/plasmid primase, P4 family ERR1359732.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359732.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359732.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359732.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359732.fasta NC_007297 1503126 snp G A A:20 G:0 CDS - 473/1884 158/627 missense_variant c.473C>T p.Thr158Met M5005_RS07625 sucrose-specific PTS transporter subunit IIBC ERR1359732.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359732.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359732.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359732.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359732.fasta NC_007297 1694174 del CT C C:18 CT:0 ERR1359732.fasta NC_007297 1699674 snp G T T:20 G:0 CDS + 553/843 185/280 stop_gained c.553G>T p.Glu185* M5005_RS08550 ropB quorum-sensing system transcriptional regulator RopB/Rgg1 ERR1359732.fasta NC_007297 1717704 snp C T T:20 C:0 CDS - 313/1641 105/546 missense_variant c.313G>A p.Val105Ile M5005_RS08640 zinc ribbon domain-containing protein ERR1359732.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359732.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359732.fasta NC_007297 1752093 snp A G G:20 A:0 CDS - 1947/2025 649/674 synonymous_variant c.1947T>C p.Val649Val M5005_RS08775 treP PTS system trehalose-specific EIIBC component ERR1359732.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359732.fasta NC_007297 1815569 snp A G G:20 A:0 CDS - 162/1026 54/341 synonymous_variant c.162T>C p.Phe54Phe M5005_RS09085 helix-turn-helix domain-containing protein ERR1359732.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169974.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169974.fasta NC_007297 36169 snp C A A:20 C:0 CDS + 158/705 53/234 stop_gained c.158C>A p.Ser53* M5005_RS00265 purC phosphoribosylaminoimidazolesuccinocarboxamide synthase SRR21169974.fasta NC_007297 53951 complex AA TT TT:19 AA:0 CDS + 628/912 210/303 missense_variant c.628_629delAAinsTT p.Lys210Leu M5005_RS00325 rgg4 transcriptional regulator Rgg4/ComR SRR21169974.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169974.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169974.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169974.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169974.fasta NC_007297 116281 snp A G G:20 A:0 CDS - 836/1494 279/497 missense_variant c.836T>C p.Ile279Thr M5005_RS00740 rofA transcriptional regulator RofA SRR21169974.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169974.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169974.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169974.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169974.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169974.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169974.fasta NC_007297 347948 snp A C C:20 A:0 CDS + 3204/4944 1068/1647 synonymous_variant c.3204A>C p.Ile1068Ile M5005_RS01880 scpC CXC chemokine-degrading serine protease SpyCEP SRR21169974.fasta NC_007297 463339 snp G A A:20 G:0 CDS - 276/1368 92/455 synonymous_variant c.276C>T p.Gly92Gly M5005_RS02475 MFS transporter SRR21169974.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169974.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169974.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169974.fasta NC_007297 559519 del AT A A:19 AT:0 SRR21169974.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169974.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169974.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169974.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169974.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169974.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169974.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169974.fasta NC_007297 686815 snp A G G:20 A:0 CDS + 390/1008 130/335 synonymous_variant c.390A>G p.Pro130Pro M5005_RS03480 phosphomevalonate kinase SRR21169974.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169974.fasta NC_007297 695440 snp G A A:20 G:0 CDS + 426/744 142/247 synonymous_variant c.426G>A p.Glu142Glu M5005_RS03525 hypothetical protein SRR21169974.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169974.fasta NC_007297 739706 snp G A A:20 G:0 SRR21169974.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169974.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169974.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169974.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169974.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169974.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169974.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169974.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169974.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169974.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169974.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169974.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169974.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169974.fasta NC_007297 960815 ins G GT GT:19 G:0 CDS - 154/189 52/62 frameshift_variant c.154dupA p.Thr52fs M5005_RS04845 DUF2273 domain-containing protein SRR21169974.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169974.fasta NC_007297 994808 snp G A A:20 G:0 CDS - 1446/1485 482/494 synonymous_variant c.1446C>T p.Asn482Asn M5005_RS05010 distal tail protein Dit SRR21169974.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169974.fasta NC_007297 1047433 snp A T T:20 A:0 SRR21169974.fasta NC_007297 1064592 snp C T T:16 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169974.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169974.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169974.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169974.fasta NC_007297 1165207 snp G T T:20 G:0 SRR21169974.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169974.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169974.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169974.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169974.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169974.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169974.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169974.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169974.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169974.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169974.fasta NC_007297 1416434 snp G A A:20 G:0 CDS - 7/2385 3/794 stop_gained c.7C>T p.Gln3* M5005_RS07185 phage/plasmid primase, P4 family SRR21169974.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169974.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169974.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169974.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169974.fasta NC_007297 1500387 snp G A A:20 G:0 CDS - 1098/2988 366/995 synonymous_variant c.1098C>T p.Asp366Asp M5005_RS07620 endo-beta-N-acetylglucosaminidase EndoS SRR21169974.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169974.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169974.fasta NC_007297 1592329 snp C A A:20 C:0 CDS - 163/1908 55/635 missense_variant c.163G>T p.Val55Phe M5005_RS08065 FtsX-like permease family protein SRR21169974.fasta NC_007297 1592346 snp T G G:20 T:0 CDS - 146/1908 49/635 missense_variant c.146A>C p.Asp49Ala M5005_RS08065 FtsX-like permease family protein SRR21169974.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169974.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169974.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169974.fasta NC_007297 1662522 del AT A A:19 AT:0 CDS + 213/702 71/233 frameshift_variant c.213delT p.Phe71fs M5005_RS08395 smeZ streptococcal mitogenic exotoxin SmeZ SRR21169974.fasta NC_007297 1663723 snp A T T:20 A:0 SRR21169974.fasta NC_007297 1678977 snp T A A:20 T:0 SRR21169974.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169974.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169974.fasta NC_007297 1718925 snp G T T:20 G:0 CDS + 663/1497 221/498 missense_variant c.663G>T p.Lys221Asn M5005_RS08645 C69 family dipeptidase SRR21169974.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169974.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169974.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169974.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169974.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169875.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169875.fasta NC_007297 64197 snp T C C:20 T:0 SRR21169875.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169875.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169875.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169875.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169875.fasta NC_007297 126007 snp C T T:20 C:0 CDS - 661/666 221/221 missense_variant c.661G>A p.Glu221Lys M5005_RS00790 hypothetical protein SRR21169875.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169875.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169875.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169875.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169875.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169875.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169875.fasta NC_007297 458987 del AC A A:19 AC:0 SRR21169875.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169875.fasta NC_007297 516326 del CA C C:19 CA:0 SRR21169875.fasta NC_007297 528231 snp A G G:20 A:0 SRR21169875.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169875.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169875.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169875.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169875.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169875.fasta NC_007297 595011 snp G A A:20 G:0 CDS + 2486/3216 829/1071 missense_variant c.2486G>A p.Ser829Asn M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169875.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169875.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169875.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169875.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169875.fasta NC_007297 681603 snp A G G:20 A:0 SRR21169875.fasta NC_007297 684809 snp A G G:20 A:0 CDS + 181/879 61/292 missense_variant c.181A>G p.Ile61Val M5005_RS03470 mvk mevalonate kinase SRR21169875.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169875.fasta NC_007297 695884 snp G A A:20 G:0 CDS - 2032/2100 678/699 missense_variant c.2032C>T p.Pro678Ser M5005_RS03530 AAA family ATPase SRR21169875.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169875.fasta NC_007297 741899 snp C A A:20 C:0 CDS + 375/1248 125/415 synonymous_variant c.375C>A p.Gly125Gly M5005_RS03760 tetratricopeptide repeat protein SRR21169875.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169875.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169875.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169875.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169875.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169875.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169875.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169875.fasta NC_007297 852410 snp G A A:20 G:0 CDS - 55/186 19/61 stop_gained c.55C>T p.Gln19* M5005_RS04310 4-oxalocrotonate tautomerase SRR21169875.fasta NC_007297 854429 snp C T T:20 C:0 CDS + 145/840 49/279 missense_variant c.145C>T p.Pro49Ser M5005_RS04325 prmC peptide chain release factor N(5)-glutamine methyltransferase SRR21169875.fasta NC_007297 899397 snp G C C:20 G:0 CDS - 834/1071 278/356 synonymous_variant c.834C>G p.Gly278Gly M5005_RS04550 xerS tyrosine recombinase XerS SRR21169875.fasta NC_007297 916225 snp C A A:20 C:0 SRR21169875.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169875.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169875.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169875.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169875.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169875.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169875.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169875.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169875.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169875.fasta NC_007297 1080019 snp A T T:20 A:0 SRR21169875.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169875.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169875.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169875.fasta NC_007297 1176352 snp T C C:20 T:0 SRR21169875.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169875.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169875.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169875.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169875.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169875.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169875.fasta NC_007297 1268834 snp G A A:20 G:0 CDS - 487/951 163/316 missense_variant c.487C>T p.Pro163Ser M5005_RS06465 ABC transporter permease SRR21169875.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169875.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169875.fasta NC_007297 1391003 snp C A A:20 C:0 CDS - 583/1908 195/635 missense_variant c.583G>T p.Ala195Ser M5005_RS07050 gp58-like family protein SRR21169875.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169875.fasta NC_007297 1404939 complex TTTA ATTT ATTT:19 TTTA:0 SRR21169875.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169875.fasta NC_007297 1408878 ins C CA CA:18 C:0 CDS - 780/1278 260/425 frameshift_variant c.780dupT p.Gly261fs M5005_RS07145 PBSX family phage terminase large subunit SRR21169875.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169875.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169875.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169875.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169875.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169875.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169875.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169875.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169875.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169875.fasta NC_007297 1664496 ins T TA TA:19 T:0 CDS + 757/1629 253/542 frameshift_variant c.756dupA p.Val253fs M5005_RS08405 ABC transporter substrate-binding protein SRR21169875.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169875.fasta NC_007297 1681791 del GCCAGTCATCTCCAGA G G:14 GCCAGTCATCTCCAGA:1 CDS - 156/942 48/313 conservative_inframe_deletion c.142_156delTCTGGAGATGACTGG p.Ser48_Trp52del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169875.fasta NC_007297 1694316 snp C T T:20 C:0 CDS - 199/297 67/98 missense_variant c.199G>A p.Val67Ile M5005_RS08525 DUF4298 domain-containing protein SRR21169875.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169875.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169875.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169875.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169875.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169875.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169883.fasta NC_007297 30981 snp T A A:20 T:0 SRR21169883.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169883.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169883.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169883.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169883.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169883.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169883.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169883.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169883.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169883.fasta NC_007297 294838 snp T C C:20 T:0 SRR21169883.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169883.fasta NC_007297 343279 del TA T T:20 TA:0 SRR21169883.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169883.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169883.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:16 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169883.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169883.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169883.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169883.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169883.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169883.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169883.fasta NC_007297 636132 snp G A A:20 G:0 CDS + 96/1194 32/397 synonymous_variant c.96G>A p.Gly32Gly M5005_RS03240 CapA family protein SRR21169883.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169883.fasta NC_007297 665585 snp G T T:20 G:0 SRR21169883.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169883.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169883.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169883.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169883.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169883.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169883.fasta NC_007297 787690 snp A G G:20 A:0 CDS + 680/828 227/275 missense_variant c.680A>G p.Asp227Gly M5005_RS03955 PTS system mannose/fructose/sorbose family transporter subunit IID SRR21169883.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169883.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169883.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169883.fasta NC_007297 859271 snp G A A:20 G:0 CDS + 264/1725 88/574 missense_variant c.264G>A p.Met88Ile M5005_RS04355 ABC transporter ATP-binding protein SRR21169883.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169883.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169883.fasta NC_007297 939075 snp A T T:20 A:0 CDS - 2241/2538 747/845 missense_variant c.2241T>A p.Asn747Lys M5005_RS04730 M1 family metallopeptidase SRR21169883.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169883.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169883.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169883.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169883.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169883.fasta NC_007297 1027013 snp G T T:20 G:0 CDS - 856/1020 286/339 missense_variant c.856C>A p.His286Asn M5005_RS05240 LacI family DNA-binding transcriptional regulator SRR21169883.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169883.fasta NC_007297 1064592 snp C T T:17 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169883.fasta NC_007297 1067012 snp C A A:20 C:0 CDS - 105/1221 35/406 missense_variant c.105G>T p.Met35Ile M5005_RS05415 MFS transporter SRR21169883.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169883.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169883.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169883.fasta NC_007297 1208106 snp T C C:20 T:0 CDS - 631/1149 211/382 missense_variant c.631A>G p.Ile211Val M5005_RS06180 cell division protein FtsQ/DivIB SRR21169883.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169883.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169883.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169883.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169883.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169883.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169883.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169883.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169883.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169883.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169883.fasta NC_007297 1408387 snp A G G:20 A:0 CDS - 1272/1278 424/425 synonymous_variant c.1272T>C p.Tyr424Tyr M5005_RS07145 PBSX family phage terminase large subunit SRR21169883.fasta NC_007297 1420246 snp G A A:20 G:0 CDS - 289/1155 97/384 synonymous_variant c.289C>T p.Leu97Leu M5005_RS07205 DUF2800 domain-containing protein SRR21169883.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169883.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169883.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169883.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169883.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169883.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169883.fasta NC_007297 1592453 del AT A A:19 AT:0 CDS - 38/1908 13/635 frameshift_variant c.38delA p.Asn13fs M5005_RS08065 FtsX-like permease family protein SRR21169883.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169883.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169883.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169883.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169883.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:15 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169883.fasta NC_007297 1681776 del ACCAGTCATCTTCAGG A A:15 ACCAGTCATCTTCAGG:0 CDS - 171/942 53/313 conservative_inframe_deletion c.157_171delCCTGAAGATGACTGG p.Pro53_Trp57del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169883.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169883.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169883.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169883.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169883.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein ERR1515826.fasta NC_007297 38923 snp C T T:20 C:0 CDS + 2084/3726 695/1241 missense_variant c.2084C>T p.Thr695Ile M5005_RS00270 phosphoribosylformylglycinamidine synthase ERR1515826.fasta NC_007297 77784 snp A G G:20 A:0 CDS + 75/939 25/312 synonymous_variant c.75A>G p.Pro25Pro M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1515826.fasta NC_007297 154140 snp A G G:20 A:0 CDS + 110/432 37/143 missense_variant c.110A>G p.Asp37Gly M5005_RS00925 hypothetical protein ERR1515826.fasta NC_007297 172971 snp C T T:20 C:0 CDS + 807/2643 269/880 synonymous_variant c.807C>T p.Tyr269Tyr M5005_RS01000 polA DNA polymerase I ERR1515826.fasta NC_007297 173967 snp T C C:20 T:0 CDS + 1803/2643 601/880 synonymous_variant c.1803T>C p.Ala601Ala M5005_RS01000 polA DNA polymerase I ERR1515826.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1515826.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1515826.fasta NC_007297 371844 del AT A A:19 AT:0 CDS - 121/648 41/215 frameshift_variant c.121delA p.Met41fs M5005_RS01995 metal-dependent transcriptional regulator ERR1515826.fasta NC_007297 437025 del GT G G:19 GT:0 ERR1515826.fasta NC_007297 444362 snp C T T:20 C:0 ERR1515826.fasta NC_007297 447065 del AT A A:19 AT:0 ERR1515826.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1515826.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1515826.fasta NC_007297 677725 snp C T T:20 C:0 CDS + 1446/1878 482/625 synonymous_variant c.1446C>T p.Asn482Asn M5005_RS03435 ABC-F family ATP-binding cassette domain-containing protein ERR1515826.fasta NC_007297 702228 snp C G G:20 C:0 CDS + 49/714 17/237 missense_variant c.49C>G p.Leu17Val M5005_RS03555 deoD purine-nucleoside phosphorylase ERR1515826.fasta NC_007297 739702 snp T A A:20 T:0 ERR1515826.fasta NC_007297 759566 snp T C C:20 T:0 CDS - 2417/2418 806/805 splice_region_variant&stop_retained_variant c.2417A>G p.Ter806Ter M5005_RS03830 hylA hyaluronidase ERR1515826.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1515826.fasta NC_007297 782255 snp A G G:19 A:0 ERR1515826.fasta NC_007297 782340 ins G GAACAAAACAA GAACAAAACAA:15 G:0 ERR1515826.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1515826.fasta NC_007297 799073 snp T C C:20 T:0 CDS + 1267/1410 423/469 synonymous_variant c.1267T>C p.Leu423Leu M5005_RS04005 pepV dipeptidase PepV ERR1515826.fasta NC_007297 810980 snp G A A:20 G:0 CDS + 19/188 7/61 missense_variant c.19G>A p.Glu7Lys M5005_RS04085 DUF3173 family protein ERR1515826.fasta NC_007297 833784 snp G A A:20 G:0 CDS + 529/1128 177/375 missense_variant c.529G>A p.Ala177Thr M5005_RS04210 AI-2E family transporter ERR1515826.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1515826.fasta NC_007297 872718 snp C T T:20 C:0 CDS + 202/849 68/282 missense_variant c.202C>T p.Arg68Cys M5005_RS04410 ylqF ribosome biogenesis GTPase YlqF ERR1515826.fasta NC_007297 890204 snp C T T:20 C:0 CDS + 305/324 102/107 missense_variant c.305C>T p.Ser102Phe M5005_RS04495 hypothetical protein ERR1515826.fasta NC_007297 927393 snp G A A:20 G:0 CDS + 952/1719 318/572 missense_variant c.952G>A p.Gly318Ser M5005_RS04675 phospho-sugar mutase ERR1515826.fasta NC_007297 935464 snp G A A:20 G:0 CDS + 357/921 119/306 synonymous_variant c.357G>A p.Leu119Leu M5005_RS04710 coaA type I pantothenate kinase ERR1515826.fasta NC_007297 941226 snp C T T:20 C:0 CDS - 90/2538 30/845 synonymous_variant c.90G>A p.Thr30Thr M5005_RS04730 M1 family metallopeptidase ERR1515826.fasta NC_007297 948923 del CT C C:19 CT:0 CDS - 105/279 35/92 frameshift_variant c.105delA p.Val36fs M5005_RS04775 UPF0223 family protein ERR1515826.fasta NC_007297 957886 snp T C C:20 T:0 ERR1515826.fasta NC_007297 959249 snp A T T:20 A:0 CDS - 78/642 26/213 missense_variant c.78T>A p.Asn26Lys M5005_RS04825 GntR family transcriptional regulator ERR1515826.fasta NC_007297 971076 snp T C C:20 T:0 CDS - 333/642 111/213 synonymous_variant c.333A>G p.Pro111Pro M5005_RS04890 amino acid ABC transporter permease ERR1515826.fasta NC_007297 980702 del CT C C:19 CT:0 ERR1515826.fasta NC_007297 1038137 snp C T T:20 C:0 ERR1515826.fasta NC_007297 1039838 snp A G G:20 A:0 CDS - 6/1704 2/567 synonymous_variant c.6T>C p.Asn2Asn M5005_RS05285 glycoside hydrolase family 13 protein ERR1515826.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1515826.fasta NC_007297 1093024 snp T C C:20 T:0 CDS - 934/1275 312/424 missense_variant c.934A>G p.Ser312Gly M5005_RS05530 polysaccharide deacetylase family protein ERR1515826.fasta NC_007297 1114613 snp C T T:20 C:0 CDS - 130/1806 44/601 missense_variant c.130G>A p.Ala44Thr M5005_RS05625 pepF oligoendopeptidase F ERR1515826.fasta NC_007297 1181088 snp C T T:20 C:0 CDS - 439/840 147/279 missense_variant c.439G>A p.Ala147Thr M5005_RS06055 DegV family protein ERR1515826.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1515826.fasta NC_007297 1231106 snp G A A:20 G:0 ERR1515826.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1515826.fasta NC_007297 1279832 del TG T T:20 TG:0 CDS - 1019/1356 340/451 frameshift_variant c.1019delC p.Ala340fs M5005_RS06500 rocA transcriptional regulator RocA ERR1515826.fasta NC_007297 1315375 snp A T T:20 A:0 ERR1515826.fasta NC_007297 1350795 del GT G G:20 GT:0 ERR1515826.fasta NC_007297 1360793 snp G A A:20 G:0 CDS - 677/840 226/279 missense_variant c.677C>T p.Ser226Leu M5005_RS06885 aldo/keto reductase ERR1515826.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1515826.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1515826.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1515826.fasta NC_007297 1487288 snp A C C:20 A:0 CDS - 1389/3828 463/1275 missense_variant c.1389T>G p.Asp463Glu M5005_RS07570 shr heme-binding protein Shr ERR1515826.fasta NC_007297 1487374 snp C A A:20 C:0 CDS - 1303/3828 435/1275 missense_variant c.1303G>T p.Ala435Ser M5005_RS07570 shr heme-binding protein Shr ERR1515826.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1515826.fasta NC_007297 1605199 snp G T T:20 G:0 CDS + 7/1008 3/335 missense_variant c.7G>T p.Ala3Ser M5005_RS10100 tyrosine-type recombinase/integrase ERR1515826.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1515826.fasta NC_007297 1625795 snp G A A:20 G:0 CDS - 4116/4398 1372/1465 synonymous_variant c.4116C>T p.Arg1372Arg M5005_RS08260 PolC-type DNA polymerase III ERR1515826.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1515826.fasta NC_007297 1654284 ins T TTTTTTTTCATTAA TTTTTTTTCATTAA:16 T:0 ERR1515826.fasta NC_007297 1681273 del TCCATCAAAG T T:16 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1515826.fasta NC_007297 1681641 del TTTTATCGCTAGACCAGTCATCTTCAGGCCAATCTTCAGGCCATTCTTC T T:10 TTTTATCGCTAGACCAGTCATCTTCAGGCCAATCTTCAGGCCATTCTTC:0 CDS - 306/942 87/313 conservative_inframe_deletion c.259_306delGAAGAATGGCCTGAAGATTGGCCTGAAGATGACTGGTCTAGCGATAAA p.Glu87_Lys102del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1515826.fasta NC_007297 1682987 snp T C C:20 T:0 CDS - 604/1455 202/484 missense_variant c.604A>G p.Ile202Val M5005_RS08475 emm M protein ERR1515826.fasta NC_007297 1694448 snp G T T:20 G:0 CDS - 67/297 23/98 missense_variant c.67C>A p.Leu23Ile M5005_RS08525 DUF4298 domain-containing protein ERR1515826.fasta NC_007297 1700724 snp T C C:20 T:0 CDS - 297/816 99/271 synonymous_variant c.297A>G p.Lys99Lys M5005_RS08555 sdaB streptodornase B ERR1515826.fasta NC_007297 1707064 snp T C C:20 T:0 CDS - 669/1305 223/434 synonymous_variant c.669A>G p.Leu223Leu M5005_RS08580 PTS sugar transporter subunit IIC ERR1515826.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1515826.fasta NC_007297 1757367 snp T C C:20 T:0 CDS + 702/732 234/243 synonymous_variant c.702T>C p.His234His M5005_RS08795 yaaA peroxide stress protein YaaA ERR1515826.fasta NC_007297 1786975 snp A G G:20 A:0 CDS + 114/912 38/303 synonymous_variant c.114A>G p.Gln38Gln M5005_RS08945 transcriptional regulator ERR1515826.fasta NC_007297 1796177 snp G A A:20 G:0 CDS - 341/2274 114/757 missense_variant c.341C>T p.Ala114Val M5005_RS08990 YhgE/Pip domain-containing protein ERR1515826.fasta NC_007297 1807167 snp T C C:20 T:0 ERR1515826.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169973.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169973.fasta NC_007297 35907 snp A T T:20 A:0 SRR21169973.fasta NC_007297 47060 del TA T T:20 TA:0 SRR21169973.fasta NC_007297 58424 del AATTTGAAAAAAACTTCACAAATTTATTGTGAAATGATTTACAAAATTTCAAAAAGT A A:10 AATTTGAAAAAAACTTCACAAATTTATTGTGAAATGATTTACAAAATTTCAAAAAGT:0 SRR21169973.fasta NC_007297 76208 del AAAG A A:20 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169973.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169973.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169973.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169973.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169973.fasta NC_007297 199451 snp C T T:20 C:0 CDS - 805/1017 269/338 missense_variant c.805G>A p.Gly269Ser M5005_RS01140 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase SRR21169973.fasta NC_007297 241653 snp A G G:20 A:0 SRR21169973.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169973.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169973.fasta NC_007297 296501 snp A G G:20 A:0 CDS + 1154/1176 385/391 missense_variant c.1154A>G p.Asn385Ser M5005_RS01595 replication initiation and membrane attachment family protein SRR21169973.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169973.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169973.fasta NC_007297 437554 snp A T T:20 A:0 CDS + 343/927 115/308 missense_variant c.343A>T p.Ile115Phe M5005_RS02330 shikimate dehydrogenase SRR21169973.fasta NC_007297 438664 snp A T T:20 A:0 CDS + 530/837 177/278 missense_variant c.530A>T p.Asn177Ile M5005_RS02335 sugar phosphate isomerase/epimerase family protein SRR21169973.fasta NC_007297 447065 del AT A A:20 AT:0 SRR21169973.fasta NC_007297 484099 snp G A A:20 G:0 CDS - 21/480 7/159 synonymous_variant c.21C>T p.Leu7Leu M5005_RS02585 aminoacyl-tRNA deacylase SRR21169973.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169973.fasta NC_007297 522609 snp C T T:20 C:0 CDS + 652/765 218/254 missense_variant c.652C>T p.Arg218Cys M5005_RS02760 (S)-acetoin forming diacetyl reductase SRR21169973.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:16 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169973.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169973.fasta NC_007297 576801 snp G A A:20 G:0 CDS + 148/495 50/164 missense_variant c.148G>A p.Asp50Asn M5005_RS02970 atpF F0F1 ATP synthase subunit B SRR21169973.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169973.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169973.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169973.fasta NC_007297 626494 snp G A A:11 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169973.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169973.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169973.fasta NC_007297 735651 snp C T T:20 C:0 SRR21169973.fasta NC_007297 736742 snp C T T:20 C:0 CDS + 1054/1107 352/368 missense_variant c.1054C>T p.Pro352Ser M5005_RS03730 NAD(P)/FAD-dependent oxidoreductase SRR21169973.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169973.fasta NC_007297 773788 ins G GA GA:20 G:0 CDS + 424/4107 142/1368 frameshift_variant c.423dupA p.Leu142fs M5005_RS03890 cas9 type II CRISPR RNA-guided endonuclease Cas9 SRR21169973.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169973.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169973.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169973.fasta NC_007297 792831 del CT C C:18 CT:0 CDS + 23/690 8/229 frameshift_variant c.23delT p.Phe8fs M5005_RS03985 YjjG family noncanonical pyrimidine nucleotidase SRR21169973.fasta NC_007297 836713 snp G T T:20 G:0 SRR21169973.fasta NC_007297 836746 snp T G G:20 T:0 CDS - 317/348 106/115 missense_variant c.317A>C p.Glu106Ala M5005_RS04230 DUF1831 domain-containing protein SRR21169973.fasta NC_007297 836762 snp T G G:20 T:0 CDS - 301/348 101/115 missense_variant c.301A>C p.Met101Leu M5005_RS04230 DUF1831 domain-containing protein SRR21169973.fasta NC_007297 836779 snp T G G:20 T:0 CDS - 284/348 95/115 missense_variant c.284A>C p.Asp95Ala M5005_RS04230 DUF1831 domain-containing protein SRR21169973.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169973.fasta NC_007297 937115 snp T C C:20 T:0 CDS - 651/1311 217/436 synonymous_variant c.651A>G p.Glu217Glu M5005_RS04720 sensor histidine kinase SRR21169973.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169973.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169973.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169973.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169973.fasta NC_007297 992082 snp G A A:20 G:0 CDS - 2687/3441 896/1146 missense_variant c.2687C>T p.Ala896Val M5005_RS05005 glucosaminidase domain-containing protein SRR21169973.fasta NC_007297 1008001 ins G GC GC:19 G:0 SRR21169973.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169973.fasta NC_007297 1058409 snp C T T:20 C:0 CDS - 463/1095 155/364 missense_variant c.463G>A p.Gly155Ser M5005_RS05370 DUF871 domain-containing protein SRR21169973.fasta NC_007297 1064592 snp C T T:16 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169973.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169973.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169973.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169973.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169973.fasta NC_007297 1213773 snp A G G:20 A:0 SRR21169973.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169973.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169973.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169973.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169973.fasta NC_007297 1328056 snp G A A:20 G:0 CDS - 568/1455 190/484 missense_variant c.568C>T p.Arg190Cys M5005_RS06740 nicotinate phosphoribosyltransferase SRR21169973.fasta NC_007297 1369054 snp G A A:20 G:0 CDS - 833/978 278/325 missense_variant c.833C>T p.Ala278Val M5005_RS06925 lacD tagatose-bisphosphate aldolase SRR21169973.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169973.fasta NC_007297 1396485 snp G A A:20 G:0 CDS - 4027/4383 1343/1460 synonymous_variant c.4027C>T p.Leu1343Leu M5005_RS07075 tape measure protein SRR21169973.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169973.fasta NC_007297 1416033 snp G A A:20 G:0 CDS - 408/2385 136/794 synonymous_variant c.408C>T p.Ile136Ile M5005_RS07185 phage/plasmid primase, P4 family SRR21169973.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169973.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169973.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169973.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169973.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169973.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169973.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169973.fasta NC_007297 1663716 snp A T T:20 A:0 SRR21169973.fasta NC_007297 1681273 del TCCATCAAAG T T:15 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169973.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:18 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169973.fasta NC_007297 1694174 del CT C C:18 CT:0 SRR21169973.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169973.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169973.fasta NC_007297 1752093 snp A G G:20 A:0 CDS - 1947/2025 649/674 synonymous_variant c.1947T>C p.Val649Val M5005_RS08775 treP PTS system trehalose-specific EIIBC component SRR21169973.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169973.fasta NC_007297 1815569 snp A G G:20 A:0 CDS - 162/1026 54/341 synonymous_variant c.162T>C p.Phe54Phe M5005_RS09085 helix-turn-helix domain-containing protein SRR21169973.fasta NC_007297 1819166 snp G A A:20 G:0 CDS + 421/1260 141/419 missense_variant c.421G>A p.Ala141Thr M5005_RS09100 hasA hyaluronan synthase HasA SRR11659685.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR11659685.fasta NC_007297 36169 snp C A A:20 C:0 CDS + 158/705 53/234 stop_gained c.158C>A p.Ser53* M5005_RS00265 purC phosphoribosylaminoimidazolesuccinocarboxamide synthase SRR11659685.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR11659685.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR11659685.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR11659685.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR11659685.fasta NC_007297 167489 snp C T T:20 C:0 SRR11659685.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR11659685.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR11659685.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR11659685.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR11659685.fasta NC_007297 343279 del TA T T:19 TA:0 SRR11659685.fasta NC_007297 459927 snp G A A:20 G:0 CDS + 109/825 37/274 missense_variant c.109G>A p.Val37Ile M5005_RS02465 Cof-type HAD-IIB family hydrolase SRR11659685.fasta NC_007297 464036 del GA G G:19 GA:0 CDS + 102/843 34/280 frameshift_variant c.102delA p.Val35fs M5005_RS02480 licT BglG family transcription antiterminator LicT SRR11659685.fasta NC_007297 469138 snp A G G:20 A:0 CDS - 770/903 257/300 missense_variant c.770T>C p.Leu257Ser M5005_RS02500 permease SRR11659685.fasta NC_007297 477024 snp T C C:20 T:0 CDS + 124/927 42/308 missense_variant c.124T>C p.Phe42Leu M5005_RS02550 peptidase U32 family protein SRR11659685.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR11659685.fasta NC_007297 528360 snp A T T:20 A:0 SRR11659685.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR11659685.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR11659685.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR11659685.fasta NC_007297 584626 snp C G G:20 C:0 CDS + 429/525 143/174 synonymous_variant c.429C>G p.Ser143Ser M5005_RS03015 DNA/RNA non-specific endonuclease SRR11659685.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR11659685.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR11659685.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR11659685.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR11659685.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR11659685.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR11659685.fasta NC_007297 697413 snp C T T:20 C:0 CDS - 503/2100 168/699 missense_variant c.503G>A p.Gly168Asp M5005_RS03530 AAA family ATPase SRR11659685.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR11659685.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR11659685.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR11659685.fasta NC_007297 782255 snp A G G:20 A:0 SRR11659685.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR11659685.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR11659685.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR11659685.fasta NC_007297 826979 snp G A A:20 G:0 CDS + 1018/1332 340/443 missense_variant c.1018G>A p.Gly340Arg M5005_RS04180 2-hydroxycarboxylate transporter family protein SRR11659685.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR11659685.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR11659685.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR11659685.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR11659685.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR11659685.fasta NC_007297 957886 snp T C C:20 T:0 SRR11659685.fasta NC_007297 959346 snp C T T:20 C:0 SRR11659685.fasta NC_007297 969181 snp A T T:20 A:0 SRR11659685.fasta NC_007297 983438 snp G C C:20 G:0 SRR11659685.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR11659685.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR11659685.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR11659685.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR11659685.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR11659685.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR11659685.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR11659685.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR11659685.fasta NC_007297 1238124 snp G A A:20 G:0 SRR11659685.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR11659685.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR11659685.fasta NC_007297 1294671 del CT C C:18 CT:0 SRR11659685.fasta NC_007297 1331138 snp T C C:20 T:0 CDS - 122/918 41/305 missense_variant c.122A>G p.Asn41Ser M5005_RS06750 trxB thioredoxin-disulfide reductase SRR11659685.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR11659685.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR11659685.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR11659685.fasta NC_007297 1410472 snp G T T:20 G:0 CDS - 135/417 45/138 synonymous_variant c.135C>A p.Ile45Ile M5005_RS07155 DUF722 domain-containing protein SRR11659685.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR11659685.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR11659685.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR11659685.fasta NC_007297 1482537 snp T C C:20 T:0 CDS - 371/1023 124/340 missense_variant c.371A>G p.Gln124Arg M5005_RS07555 FecCD family ABC transporter permease SRR11659685.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR11659685.fasta NC_007297 1535209 snp A G G:20 A:0 SRR11659685.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR11659685.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR11659685.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR11659685.fasta NC_007297 1633319 snp G A A:20 G:0 CDS - 160/1260 54/419 missense_variant c.160C>T p.Leu54Phe M5005_RS08270 rseP RIP metalloprotease RseP SRR11659685.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR11659685.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR11659685.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR11659685.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR11659685.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR11659685.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR11659685.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21170054.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21170054.fasta NC_007297 104737 snp C T T:20 C:0 CDS + 63/285 21/94 synonymous_variant c.63C>T p.Gly21Gly M5005_RS00665 comGE competence type IV pilus minor pilin ComGE SRR21170054.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21170054.fasta NC_007297 167489 snp C T T:20 C:0 SRR21170054.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21170054.fasta NC_007297 292783 snp G A A:20 G:0 CDS + 322/687 108/228 missense_variant c.322G>A p.Glu108Lys M5005_RS01580 covR two-component system response regulator CovR/CsrR SRR21170054.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21170054.fasta NC_007297 317937 del GA G G:18 GA:0 SRR21170054.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21170054.fasta NC_007297 360292 ins C CT CT:19 C:0 CDS - 462/633 154/210 frameshift_variant c.462dupA p.Glu155fs M5005_RS01930 hypothetical protein SRR21170054.fasta NC_007297 362604 snp A T T:20 A:0 CDS - 161/699 54/232 stop_gained c.161T>A p.Leu54* M5005_RS01940 spej streptococcal pyrogenic exotoxin SpeJ SRR21170054.fasta NC_007297 438722 snp G C C:21 G:0 CDS + 588/837 196/278 missense_variant c.588G>C p.Lys196Asn M5005_RS02335 sugar phosphate isomerase/epimerase family protein SRR21170054.fasta NC_007297 438759 complex CACT AACA AACA:19 CACT:0 CDS + 625/837 209/278 missense_variant c.625_628delCACTinsAACA p.HisCys209AsnSer M5005_RS02335 sugar phosphate isomerase/epimerase family protein SRR21170054.fasta NC_007297 444575 snp G T T:20 G:0 SRR21170054.fasta NC_007297 478335 snp A C C:20 A:0 CDS + 418/1287 140/428 missense_variant c.418A>C p.Thr140Pro M5005_RS02555 peptidase U32 family protein SRR21170054.fasta NC_007297 496313 snp T G G:20 T:0 CDS + 717/759 239/252 synonymous_variant c.717T>G p.Leu239Leu M5005_RS02635 tpiA triose-phosphate isomerase SRR21170054.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21170054.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21170054.fasta NC_007297 575668 snp A T T:20 A:0 SRR21170054.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21170054.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21170054.fasta NC_007297 605409 snp C T T:20 C:0 CDS + 506/855 169/284 missense_variant c.506C>T p.Ala169Val M5005_RS03095 rfbD dTDP-4-dehydrorhamnose reductase SRR21170054.fasta NC_007297 652108 snp A T T:20 A:0 CDS + 1179/1221 393/406 missense_variant c.1179A>T p.Lys393Asn M5005_RS03310 ABC transporter permease SRR21170054.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21170054.fasta NC_007297 728708 snp C T T:20 C:0 CDS + 582/930 194/309 synonymous_variant c.582C>T p.Arg194Arg M5005_RS03690 rnz ribonuclease Z SRR21170054.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21170054.fasta NC_007297 773339 snp A G G:20 A:0 SRR21170054.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21170054.fasta NC_007297 782255 snp A G G:20 A:0 SRR21170054.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21170054.fasta NC_007297 835491 ins G GT GT:19 G:0 CDS - 318/696 106/231 frameshift_variant c.318dupA p.Pro107fs M5005_RS04220 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein SRR21170054.fasta NC_007297 845251 snp C T T:20 C:0 SRR21170054.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21170054.fasta NC_007297 861978 snp G A A:20 G:0 CDS + 1250/1728 417/575 missense_variant c.1250G>A p.Gly417Asp M5005_RS04360 ABC transporter ATP-binding protein SRR21170054.fasta NC_007297 875860 snp G A A:20 G:0 CDS + 707/2130 236/709 missense_variant c.707G>A p.Gly236Asp M5005_RS04425 topA type I DNA topoisomerase SRR21170054.fasta NC_007297 888321 snp C T T:20 C:0 CDS - 1200/1404 400/467 missense_variant c.1200G>A p.Met400Ile M5005_RS04490 CitMHS family transporter SRR21170054.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21170054.fasta NC_007297 957886 snp T C C:20 T:0 SRR21170054.fasta NC_007297 959346 snp C T T:20 C:0 SRR21170054.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21170054.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21170054.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21170054.fasta NC_007297 1133158 snp T C C:20 T:0 CDS - 602/1545 201/514 missense_variant c.602A>G p.Asp201Gly M5005_RS05715 peptide chain release factor 3 SRR21170054.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21170054.fasta NC_007297 1163250 snp A G G:20 A:0 CDS - 230/1494 77/497 missense_variant c.230T>C p.Ile77Thr M5005_RS05905 hypothetical protein SRR21170054.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21170054.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21170054.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21170054.fasta NC_007297 1344825 snp A T T:20 A:0 SRR21170054.fasta NC_007297 1344843 snp C G G:20 C:0 SRR21170054.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21170054.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21170054.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21170054.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21170054.fasta NC_007297 1498886 snp C A A:20 C:0 CDS - 2599/2988 867/995 stop_gained c.2599G>T p.Glu867* M5005_RS07620 endo-beta-N-acetylglucosaminidase EndoS SRR21170054.fasta NC_007297 1515582 snp C T T:20 C:0 CDS - 130/291 44/96 missense_variant c.130G>A p.Glu44Lys M5005_RS07690 rpsF 30S ribosomal protein S6 SRR21170054.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21170054.fasta NC_007297 1592217 snp A T T:20 A:0 CDS - 275/1908 92/635 missense_variant c.275T>A p.Ile92Lys M5005_RS08065 FtsX-like permease family protein SRR21170054.fasta NC_007297 1595668 snp A T T:20 A:0 SRR21170054.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21170054.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21170054.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21170054.fasta NC_007297 1683786 del AG A A:20 AG:0 CDS - 1578/1590 526/529 frameshift_variant c.1578delC p.Ser527fs M5005_RS08480 mga virulence factor transcriptional regulator Mga SRR21170054.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21170054.fasta NC_007297 1792060 complex TATAA ATTAT ATTAT:18 TATAA:0 SRR21170054.fasta NC_007297 1792074 snp A T T:20 A:0 SRR21170054.fasta NC_007297 1806808 snp T G G:20 T:0 SRR21170054.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21170054.fasta NC_007297 1811465 snp C A A:20 C:0 SRR21170053.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21170053.fasta NC_007297 47262 snp G T T:20 G:0 CDS + 145/1266 49/421 missense_variant c.145G>T p.Val49Phe M5005_RS00300 purD phosphoribosylamine--glycine ligase SRR21170053.fasta NC_007297 62573 snp T A A:20 T:0 SRR21170053.fasta NC_007297 73847 ins G GA GA:18 G:0 SRR21170053.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21170053.fasta NC_007297 167489 snp C T T:20 C:0 SRR21170053.fasta NC_007297 192592 snp T C C:20 T:0 CDS + 264/1350 88/449 synonymous_variant c.264T>C p.Gly88Gly M5005_RS01105 glucose-6-phosphate isomerase SRR21170053.fasta NC_007297 207432 del GT G G:20 GT:0 SRR21170053.fasta NC_007297 225387 snp G C C:20 G:0 SRR21170053.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21170053.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21170053.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21170053.fasta NC_007297 410192 snp A G G:20 A:0 CDS - 907/927 303/308 missense_variant c.907T>C p.Tyr303His M5005_RS02215 DUF979 domain-containing protein SRR21170053.fasta NC_007297 411718 snp C T T:20 C:0 CDS - 64/684 22/227 missense_variant c.64G>A p.Ala22Thr M5005_RS02220 DUF969 domain-containing protein SRR21170053.fasta NC_007297 446376 snp T A A:20 T:0 CDS + 551/1209 184/402 missense_variant c.551T>A p.Phe184Tyr M5005_RS02370 MFS transporter SRR21170053.fasta NC_007297 447852 snp C T T:20 C:0 CDS - 1143/1659 381/552 synonymous_variant c.1143G>A p.Lys381Lys M5005_RS10025 DUF2326 domain-containing protein SRR21170053.fasta NC_007297 487996 snp A C C:20 A:0 CDS - 1410/1800 470/599 missense_variant c.1410T>G p.Ile470Met M5005_RS02615 pepF oligoendopeptidase F SRR21170053.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:16 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21170053.fasta NC_007297 559838 snp A G G:21 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21170053.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21170053.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21170053.fasta NC_007297 605409 snp C T T:20 C:0 CDS + 506/855 169/284 missense_variant c.506C>T p.Ala169Val M5005_RS03095 rfbD dTDP-4-dehydrorhamnose reductase SRR21170053.fasta NC_007297 617961 snp T A A:20 T:0 CDS + 276/1497 92/498 missense_variant c.276T>A p.His92Gln M5005_RS03150 DUF2142 domain-containing protein SRR21170053.fasta NC_007297 652108 snp A T T:20 A:0 CDS + 1179/1221 393/406 missense_variant c.1179A>T p.Lys393Asn M5005_RS03310 ABC transporter permease SRR21170053.fasta NC_007297 678178 snp G T T:20 G:0 SRR21170053.fasta NC_007297 681615 snp A G G:20 A:0 SRR21170053.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21170053.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21170053.fasta NC_007297 772954 del GT G G:20 GT:0 SRR21170053.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21170053.fasta NC_007297 782255 snp A G G:20 A:0 SRR21170053.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21170053.fasta NC_007297 804418 del AGTC A A:19 AGTC:0 CDS + 1108/1493 370/496 conservative_inframe_deletion c.1108_1110delGTC p.Val370del M5005_RS10060 SAG1250 family conjugative relaxase SRR21170053.fasta NC_007297 805831 snp G T T:12 G:0 CDS + 198/1347 66/448 missense_variant c.198G>T p.Met66Ile M5005_RS04050 sensor histidine kinase SRR21170053.fasta NC_007297 845251 snp C T T:20 C:0 SRR21170053.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21170053.fasta NC_007297 861978 snp G A A:20 G:0 CDS + 1250/1728 417/575 missense_variant c.1250G>A p.Gly417Asp M5005_RS04360 ABC transporter ATP-binding protein SRR21170053.fasta NC_007297 888321 snp C T T:20 C:0 CDS - 1200/1404 400/467 missense_variant c.1200G>A p.Met400Ile M5005_RS04490 CitMHS family transporter SRR21170053.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21170053.fasta NC_007297 957886 snp T C C:20 T:0 SRR21170053.fasta NC_007297 959346 snp C T T:20 C:0 SRR21170053.fasta NC_007297 989782 snp C T T:20 C:0 CDS - 1542/1863 514/620 stop_gained c.1542G>A p.Trp514* M5005_RS05000 DUF859 family phage minor structural protein SRR21170053.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21170053.fasta NC_007297 1064592 snp C T T:17 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21170053.fasta NC_007297 1112093 snp G A A:20 G:0 CDS - 469/1197 157/398 synonymous_variant c.469C>T p.Leu157Leu M5005_RS05620 L-lactate MFS transporter SRR21170053.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21170053.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21170053.fasta NC_007297 1149770 snp G A A:14 G:0 CDS - 376/618 126/205 missense_variant c.376C>T p.Pro126Ser M5005_RS05810 DUF1366 domain-containing protein SRR21170053.fasta NC_007297 1198715 snp G T T:20 G:0 CDS - 2522/2802 841/933 missense_variant c.2522C>A p.Thr841Asn M5005_RS06140 ileS isoleucine--tRNA ligase SRR21170053.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21170053.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21170053.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21170053.fasta NC_007297 1247749 del AT A A:19 AT:0 CDS - 480/2409 160/802 frameshift_variant c.480delA p.Lys160fs M5005_RS06370 CRISPR-associated helicase/endonuclease Cas3 SRR21170053.fasta NC_007297 1346401 snp G A A:20 G:0 CDS - 553/1986 185/661 synonymous_variant c.553C>T p.Leu185Leu M5005_RS06825 tkt transketolase SRR21170053.fasta NC_007297 1350795 del GT G G:20 GT:0 SRR21170053.fasta NC_007297 1372206 snp G A A:20 G:0 CDS - 837/1452 279/483 synonymous_variant c.837C>T p.Cys279Cys M5005_RS06945 PTS galactitol transporter subunit IIC SRR21170053.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21170053.fasta NC_007297 1401110 snp C T T:20 C:0 CDS - 180/456 60/151 synonymous_variant c.180G>A p.Val60Val M5005_RS07085 tail assembly chaperone SRR21170053.fasta NC_007297 1435937 snp T C C:20 T:0 CDS + 252/993 84/330 synonymous_variant c.252T>C p.Asn84Asn M5005_RS07325 PTS sugar transporter subunit IIB SRR21170053.fasta NC_007297 1452237 snp T G G:20 T:0 CDS - 637/1158 213/385 missense_variant c.637A>C p.Thr213Pro M5005_RS07415 dnaJ molecular chaperone DnaJ SRR21170053.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21170053.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21170053.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21170053.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21170053.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21170053.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21170053.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21170053.fasta NC_007297 1699554 snp T C C:20 T:0 CDS + 433/843 145/280 missense_variant c.433T>C p.Tyr145His M5005_RS08550 ropB quorum-sensing system transcriptional regulator RopB/Rgg1 SRR21170053.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21170053.fasta NC_007297 1745157 snp T C C:20 T:0 CDS - 650/3075 217/1024 missense_variant c.650A>G p.Gln217Arg M5005_RS08750 AAA family ATPase SRR21170053.fasta NC_007297 1747348 snp C T T:20 C:0 CDS + 338/1041 113/346 missense_variant c.338C>T p.Ala113Val M5005_RS08760 tsf translation elongation factor Ts SRR21170053.fasta NC_007297 1749973 snp G A A:20 G:0 CDS - 140/1896 47/631 missense_variant c.140C>T p.Thr47Ile M5005_RS08765 pepO endopeptidase PepO SRR21170053.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359663.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359663.fasta NC_007297 50024 snp A G G:20 A:0 CDS + 886/1074 296/357 missense_variant c.886A>G p.Ile296Val M5005_RS00310 purK 5-(carboxyamino)imidazole ribonucleotide synthase ERR1359663.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359663.fasta NC_007297 113912 snp T G G:20 T:0 CDS - 706/978 236/325 missense_variant c.706A>C p.Met236Leu M5005_RS00730 dusB tRNA dihydrouridine synthase DusB ERR1359663.fasta NC_007297 157214 snp G A A:20 G:0 CDS + 798/1140 266/379 synonymous_variant c.798G>A p.Lys266Lys M5005_RS00940 trans-sulfuration enzyme family protein ERR1359663.fasta NC_007297 160529 snp C T T:20 C:0 ERR1359663.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359663.fasta NC_007297 246905 snp G A A:20 G:0 CDS + 726/840 242/279 synonymous_variant c.726G>A p.Ala242Ala M5005_RS01350 undecaprenyl-diphosphate phosphatase ERR1359663.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359663.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359663.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359663.fasta NC_007297 445305 snp A C C:20 A:0 CDS + 722/1158 241/385 missense_variant c.722A>C p.Asn241Thr M5005_RS02365 nucleotide sugar dehydrogenase ERR1359663.fasta NC_007297 464454 snp G A A:20 G:0 CDS + 513/843 171/280 synonymous_variant c.513G>A p.Glu171Glu M5005_RS02480 licT BglG family transcription antiterminator LicT ERR1359663.fasta NC_007297 502958 snp G A A:20 G:0 CDS + 792/2682 264/893 synonymous_variant c.792G>A p.Val264Val M5005_RS02670 cation-translocating P-type ATPase ERR1359663.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359663.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359663.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359663.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359663.fasta NC_007297 612955 snp G A A:20 G:0 CDS + 221/2475 74/824 missense_variant c.221G>A p.Ser74Asn M5005_RS03130 LTA synthase family protein ERR1359663.fasta NC_007297 614851 snp T C C:20 T:0 CDS + 2117/2475 706/824 missense_variant c.2117T>C p.Val706Ala M5005_RS03130 LTA synthase family protein ERR1359663.fasta NC_007297 673591 snp G T T:20 G:0 ERR1359663.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359663.fasta NC_007297 736146 snp C T T:20 C:0 CDS + 458/1107 153/368 missense_variant c.458C>T p.Ala153Val M5005_RS03730 NAD(P)/FAD-dependent oxidoreductase ERR1359663.fasta NC_007297 738129 snp C T T:20 C:0 CDS + 408/594 136/197 synonymous_variant c.408C>T p.Val136Val M5005_RS03740 dTDP-4-dehydrorhamnose 3,5-epimerase family protein ERR1359663.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359663.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359663.fasta NC_007297 782255 snp A G G:10 A:0 ERR1359663.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359663.fasta NC_007297 827884 snp A C C:20 A:0 CDS + 561/1167 187/388 synonymous_variant c.561A>C p.Val187Val M5005_RS04185 NAD(P)-dependent malic enzyme ERR1359663.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359663.fasta NC_007297 852300 snp A G G:20 A:0 CDS - 165/186 55/61 synonymous_variant c.165T>C p.Gly55Gly M5005_RS04310 4-oxalocrotonate tautomerase ERR1359663.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359663.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359663.fasta NC_007297 950802 snp C T T:20 C:0 CDS - 521/885 174/294 missense_variant c.521G>A p.Ser174Asn M5005_RS04790 truB tRNA pseudouridine(55) synthase TruB ERR1359663.fasta NC_007297 954877 snp T C C:20 T:0 CDS - 2290/2637 764/878 missense_variant c.2290A>G p.Ile764Val M5005_RS04810 FtsX-like permease family protein ERR1359663.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359663.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359663.fasta NC_007297 1023153 snp T C C:20 T:0 CDS - 2054/2265 685/754 missense_variant c.2054A>G p.Asp685Gly M5005_RS05230 glgP glycogen/starch/alpha-glucan family phosphorylase ERR1359663.fasta NC_007297 1036960 snp A G G:20 A:0 CDS - 1155/2136 385/711 synonymous_variant c.1155T>C p.Asn385Asn M5005_RS05280 amyA alpha-amylase AmyA ERR1359663.fasta NC_007297 1041601 snp A T T:20 A:0 ERR1359663.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359663.fasta NC_007297 1064592 snp C T T:10 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359663.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359663.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359663.fasta NC_007297 1157073 snp G A A:20 G:0 CDS - 33/336 11/111 synonymous_variant c.33C>T p.Asp11Asp M5005_RS05850 hypothetical protein ERR1359663.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359663.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359663.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359663.fasta NC_007297 1237669 snp G C C:20 G:0 CDS - 376/933 126/310 missense_variant c.376C>G p.Pro126Ala M5005_RS06325 msrB peptide-methionine (R)-S-oxide reductase MsrB ERR1359663.fasta NC_007297 1241376 snp G A A:20 G:0 CDS - 164/1026 55/341 missense_variant c.164C>T p.Ala55Val M5005_RS06345 cas1c type I-C CRISPR-associated endonuclease Cas1c ERR1359663.fasta NC_007297 1283198 snp C T T:20 C:0 CDS + 213/777 71/258 synonymous_variant c.213C>T p.Arg71Arg M5005_RS06510 recX recombination regulator RecX ERR1359663.fasta NC_007297 1339838 del CA C C:19 CA:0 CDS - 121/141 41/46 frameshift_variant c.121delT p.Trp41fs M5005_RS09840 hypothetical protein ERR1359663.fasta NC_007297 1379130 del GT G G:20 GT:0 ERR1359663.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359663.fasta NC_007297 1410947 ins A AC AC:20 A:0 CDS - 688/852 230/283 frameshift_variant c.688dupG p.Val230fs M5005_RS07165 DNA-methyltransferase ERR1359663.fasta NC_007297 1418683 snp T C C:20 T:0 CDS - 285/558 95/185 synonymous_variant c.285A>G p.Gly95Gly M5005_RS07195 DUF2815 family protein ERR1359663.fasta NC_007297 1456645 snp A G G:20 A:0 CDS - 126/1035 42/344 synonymous_variant c.126T>C p.Asn42Asn M5005_RS07430 hrcA heat-inducible transcriptional repressor HrcA ERR1359663.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359663.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359663.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359663.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359663.fasta NC_007297 1622243 snp G A A:20 G:0 ERR1359663.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359663.fasta NC_007297 1629425 snp C T T:20 C:0 CDS - 486/4398 162/1465 synonymous_variant c.486G>A p.Val162Val M5005_RS08260 PolC-type DNA polymerase III ERR1359663.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359663.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359663.fasta NC_007297 1700280 snp G A A:20 G:0 CDS - 741/816 247/271 synonymous_variant c.741C>T p.Asn247Asn M5005_RS08555 sdaB streptodornase B ERR1359663.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359663.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359644.fasta NC_007297 12205 snp A G G:20 A:0 CDS + 1256/1287 419/428 missense_variant c.1256A>G p.Lys419Arg M5005_RS00050 tilS tRNA lysidine(34) synthetase TilS ERR1359644.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359644.fasta NC_007297 46686 snp C T T:20 C:0 CDS - 180/1125 60/374 missense_variant c.180G>A p.Met60Ile M5005_RS00295 CHAP domain-containing protein ERR1359644.fasta NC_007297 66189 snp A G G:20 A:0 CDS + 63/297 21/98 synonymous_variant c.63A>G p.Glu21Glu M5005_RS00380 50S ribosomal protein L23 ERR1359644.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359644.fasta NC_007297 123286 snp C T T:20 C:0 CDS - 903/1353 301/450 stop_gained c.903G>A p.Trp301* M5005_RS00770 IS66-like element short variant transposase ERR1359644.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359644.fasta NC_007297 247737 snp C T T:20 C:0 CDS + 573/762 191/253 synonymous_variant c.573C>T p.Ser191Ser M5005_RS01355 mecA adaptor protein MecA ERR1359644.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359644.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359644.fasta NC_007297 298431 snp G C C:20 G:0 CDS + 943/1311 315/436 missense_variant c.943G>C p.Asp315His M5005_RS01605 der ribosome biogenesis GTPase Der ERR1359644.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359644.fasta NC_007297 366995 snp G A A:20 G:0 CDS + 714/1338 238/445 synonymous_variant c.714G>A p.Leu238Leu M5005_RS01965 MFS transporter ERR1359644.fasta NC_007297 402372 snp C T T:20 C:0 ERR1359644.fasta NC_007297 409696 snp G T T:20 G:0 CDS - 427/648 143/215 missense_variant c.427C>A p.His143Asn M5005_RS02210 pcp pyroglutamyl-peptidase I ERR1359644.fasta NC_007297 444224 snp G A A:20 G:0 ERR1359644.fasta NC_007297 532817 snp G A A:20 G:0 CDS + 1273/1398 425/465 missense_variant c.1273G>A p.Val425Ile M5005_RS02795 C69 family dipeptidase ERR1359644.fasta NC_007297 532933 snp G C C:20 G:0 CDS + 1389/1398 463/465 missense_variant c.1389G>C p.Leu463Phe M5005_RS02795 C69 family dipeptidase ERR1359644.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359644.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359644.fasta NC_007297 575668 snp A T T:20 A:0 ERR1359644.fasta NC_007297 577743 snp A G G:20 A:0 CDS + 44/1509 15/502 missense_variant c.44A>G p.Gln15Arg M5005_RS02980 atpA F0F1 ATP synthase subunit alpha ERR1359644.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359644.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359644.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359644.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359644.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359644.fasta NC_007297 782255 snp A G G:18 A:0 ERR1359644.fasta NC_007297 782340 ins G GAACAAAACAAAACAAAACAA GAACAAAACAAAACAAAACAA:14 G:0 ERR1359644.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359644.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359644.fasta NC_007297 852300 snp A G G:20 A:0 CDS - 165/186 55/61 synonymous_variant c.165T>C p.Gly55Gly M5005_RS04310 4-oxalocrotonate tautomerase ERR1359644.fasta NC_007297 892361 snp G T T:20 G:0 CDS + 37/888 13/295 missense_variant c.37G>T p.Gly13Cys M5005_RS04520 citE citrate (pro-3S)-lyase subunit beta ERR1359644.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359644.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359644.fasta NC_007297 950802 snp C T T:20 C:0 CDS - 521/885 174/294 missense_variant c.521G>A p.Ser174Asn M5005_RS04790 truB tRNA pseudouridine(55) synthase TruB ERR1359644.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359644.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359644.fasta NC_007297 968540 snp T C C:20 T:0 CDS - 367/774 123/257 missense_variant c.367A>G p.Thr123Ala M5005_RS04875 cfa CAMP factor pore-forming toxin Cfa ERR1359644.fasta NC_007297 983325 snp A T T:20 A:0 CDS - 44/615 15/204 missense_variant c.44T>A p.Ile15Asn M5005_RS04940 TVP38/TMEM64 family protein ERR1359644.fasta NC_007297 1007805 snp A G G:20 A:0 CDS - 192/435 64/144 synonymous_variant c.192T>C p.Arg64Arg M5005_RS05095 ArpU family phage packaging/lysis transcriptional regulator ERR1359644.fasta NC_007297 1023153 snp T C C:20 T:0 CDS - 2054/2265 685/754 missense_variant c.2054A>G p.Asp685Gly M5005_RS05230 glgP glycogen/starch/alpha-glucan family phosphorylase ERR1359644.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359644.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359644.fasta NC_007297 1080071 snp A G G:20 A:0 ERR1359644.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359644.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359644.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359644.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359644.fasta NC_007297 1227014 snp G A A:20 G:0 CDS - 938/1494 313/497 missense_variant c.938C>T p.Thr313Ile M5005_RS06275 YfcC family protein ERR1359644.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359644.fasta NC_007297 1241376 snp G A A:20 G:0 CDS - 164/1026 55/341 missense_variant c.164C>T p.Ala55Val M5005_RS06345 cas1c type I-C CRISPR-associated endonuclease Cas1c ERR1359644.fasta NC_007297 1249379 snp G A A:20 G:0 CDS - 1653/2649 551/882 synonymous_variant c.1653C>T p.Ala551Ala M5005_RS06375 valine--tRNA ligase ERR1359644.fasta NC_007297 1280929 snp C T T:20 C:0 ERR1359644.fasta NC_007297 1294671 del CT C C:19 CT:0 ERR1359644.fasta NC_007297 1339838 del CA C C:19 CA:0 CDS - 121/141 41/46 frameshift_variant c.121delT p.Trp41fs M5005_RS09840 hypothetical protein ERR1359644.fasta NC_007297 1350795 del GT G G:19 GT:0 ERR1359644.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359644.fasta NC_007297 1413407 snp T C C:20 T:0 CDS - 263/276 88/91 missense_variant c.263A>G p.Glu88Gly M5005_RS07180 VRR-NUC domain-containing protein ERR1359644.fasta NC_007297 1422626 snp T A A:20 T:0 CDS + 11/414 4/137 missense_variant c.11T>A p.Phe4Tyr M5005_RS07240 hypothetical protein ERR1359644.fasta NC_007297 1439567 snp G C C:20 G:0 CDS + 199/1278 67/425 missense_variant c.199G>C p.Glu67Gln M5005_RS07345 serS serine--tRNA ligase ERR1359644.fasta NC_007297 1451563 snp C G G:20 C:0 ERR1359644.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359644.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359644.fasta NC_007297 1477951 snp G A A:20 G:0 CDS - 1349/1671 450/556 missense_variant c.1349C>T p.Ala450Val M5005_RS07540 amino acid ABC transporter ATP-binding/permease protein ERR1359644.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359644.fasta NC_007297 1532201 snp A G G:20 A:0 CDS - 592/753 198/250 missense_variant c.592T>C p.Trp198Arg M5005_RS07770 CppA N-terminal domain-containing protein ERR1359644.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359644.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359644.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359644.fasta NC_007297 1681273 del TCCATCAAAG T T:12 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359644.fasta NC_007297 1682035 snp T C C:20 T:0 ERR1359644.fasta NC_007297 1695721 snp T C C:20 T:0 CDS - 479/930 160/309 missense_variant c.479A>G p.Glu160Gly M5005_RS08535 prsA peptidylprolyl isomerase PrsA ERR1359644.fasta NC_007297 1718194 snp G T T:20 G:0 ERR1359644.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359644.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359644.fasta NC_007297 1810477 snp C T T:20 C:0 ERR1359644.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169985.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169985.fasta NC_007297 36169 snp C A A:20 C:0 CDS + 158/705 53/234 stop_gained c.158C>A p.Ser53* M5005_RS00265 purC phosphoribosylaminoimidazolesuccinocarboxamide synthase SRR21169985.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169985.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169985.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169985.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169985.fasta NC_007297 116281 snp A G G:20 A:0 CDS - 836/1494 279/497 missense_variant c.836T>C p.Ile279Thr M5005_RS00740 rofA transcriptional regulator RofA SRR21169985.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169985.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169985.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169985.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169985.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169985.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169985.fasta NC_007297 347948 snp A C C:20 A:0 CDS + 3204/4944 1068/1647 synonymous_variant c.3204A>C p.Ile1068Ile M5005_RS01880 scpC CXC chemokine-degrading serine protease SpyCEP SRR21169985.fasta NC_007297 371784 snp A G G:20 A:0 CDS - 182/648 61/215 missense_variant c.182T>C p.Leu61Pro M5005_RS01995 metal-dependent transcriptional regulator SRR21169985.fasta NC_007297 456659 snp T A A:20 T:0 CDS + 335/900 112/299 missense_variant c.335T>A p.Ile112Asn M5005_RS10035 histidyl-tRNA synthetase SRR21169985.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169985.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169985.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169985.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169985.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169985.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169985.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169985.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169985.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169985.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169985.fasta NC_007297 686815 snp A G G:20 A:0 CDS + 390/1008 130/335 synonymous_variant c.390A>G p.Pro130Pro M5005_RS03480 phosphomevalonate kinase SRR21169985.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169985.fasta NC_007297 695440 snp G A A:20 G:0 CDS + 426/744 142/247 synonymous_variant c.426G>A p.Glu142Glu M5005_RS03525 hypothetical protein SRR21169985.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169985.fasta NC_007297 739706 snp G A A:20 G:0 SRR21169985.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169985.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169985.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169985.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169985.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169985.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169985.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169985.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169985.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169985.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169985.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169985.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169985.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169985.fasta NC_007297 960815 ins G GT GT:19 G:0 CDS - 154/189 52/62 frameshift_variant c.154dupA p.Thr52fs M5005_RS04845 DUF2273 domain-containing protein SRR21169985.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169985.fasta NC_007297 994808 snp G A A:20 G:0 CDS - 1446/1485 482/494 synonymous_variant c.1446C>T p.Asn482Asn M5005_RS05010 distal tail protein Dit SRR21169985.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169985.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169985.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169985.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169985.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169985.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169985.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169985.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169985.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169985.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169985.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169985.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169985.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169985.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169985.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169985.fasta NC_007297 1416434 snp G A A:20 G:0 CDS - 7/2385 3/794 stop_gained c.7C>T p.Gln3* M5005_RS07185 phage/plasmid primase, P4 family SRR21169985.fasta NC_007297 1435467 snp T A A:20 T:0 SRR21169985.fasta NC_007297 1445049 snp G A A:20 G:0 CDS - 1011/1233 337/410 synonymous_variant c.1011C>T p.His337His M5005_RS07375 fabF beta-ketoacyl-ACP synthase II SRR21169985.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169985.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169985.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169985.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169985.fasta NC_007297 1500387 snp G A A:20 G:0 CDS - 1098/2988 366/995 synonymous_variant c.1098C>T p.Asp366Asp M5005_RS07620 endo-beta-N-acetylglucosaminidase EndoS SRR21169985.fasta NC_007297 1514097 snp G T T:20 G:0 CDS + 383/657 128/218 missense_variant c.383G>T p.Gly128Val M5005_RS07675 DUF1129 domain-containing protein SRR21169985.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169985.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169985.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169985.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169985.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169985.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169985.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169985.fasta NC_007297 1718925 snp G T T:20 G:0 CDS + 663/1497 221/498 missense_variant c.663G>T p.Lys221Asn M5005_RS08645 C69 family dipeptidase SRR21169985.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169985.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169985.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169985.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169985.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169965.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169965.fasta NC_007297 76208 del AAAG A A:20 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169965.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169965.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169965.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169965.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169965.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169965.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169965.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169965.fasta NC_007297 294838 snp T C C:20 T:0 SRR21169965.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169965.fasta NC_007297 343279 del TA T T:20 TA:0 SRR21169965.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169965.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169965.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169965.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169965.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169965.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169965.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169965.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169965.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169965.fasta NC_007297 636132 snp G A A:20 G:0 CDS + 96/1194 32/397 synonymous_variant c.96G>A p.Gly32Gly M5005_RS03240 CapA family protein SRR21169965.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169965.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169965.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169965.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169965.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169965.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169965.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169965.fasta NC_007297 787690 snp A G G:20 A:0 CDS + 680/828 227/275 missense_variant c.680A>G p.Asp227Gly M5005_RS03955 PTS system mannose/fructose/sorbose family transporter subunit IID SRR21169965.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169965.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169965.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169965.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169965.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169965.fasta NC_007297 939075 snp A T T:20 A:0 CDS - 2241/2538 747/845 missense_variant c.2241T>A p.Asn747Lys M5005_RS04730 M1 family metallopeptidase SRR21169965.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169965.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169965.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169965.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169965.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169965.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169965.fasta NC_007297 1064592 snp C T T:17 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169965.fasta NC_007297 1067012 snp C A A:20 C:0 CDS - 105/1221 35/406 missense_variant c.105G>T p.Met35Ile M5005_RS05415 MFS transporter SRR21169965.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169965.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169965.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169965.fasta NC_007297 1208106 snp T C C:20 T:0 CDS - 631/1149 211/382 missense_variant c.631A>G p.Ile211Val M5005_RS06180 cell division protein FtsQ/DivIB SRR21169965.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169965.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169965.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169965.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169965.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169965.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169965.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169965.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169965.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169965.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169965.fasta NC_007297 1408387 snp A G G:20 A:0 CDS - 1272/1278 424/425 synonymous_variant c.1272T>C p.Tyr424Tyr M5005_RS07145 PBSX family phage terminase large subunit SRR21169965.fasta NC_007297 1420246 snp G A A:20 G:0 CDS - 289/1155 97/384 synonymous_variant c.289C>T p.Leu97Leu M5005_RS07205 DUF2800 domain-containing protein SRR21169965.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169965.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169965.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169965.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169965.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169965.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169965.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169965.fasta NC_007297 1630160 del CT C C:18 CT:0 SRR21169965.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169965.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169965.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:15 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169965.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169965.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169965.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169965.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169965.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169965.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR27241223.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR27241223.fasta NC_007297 44732 ins T TGAAA TGAAA:18 T:0 CDS + 602/1548 201/515 frameshift_variant c.598_601dupGAAA p.Lys201fs M5005_RS00290 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase SRR27241223.fasta NC_007297 76208 del AAAG A A:21 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR27241223.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha SRR27241223.fasta NC_007297 78621 snp A C C:20 A:0 CDS + 912/939 304/312 missense_variant c.912A>C p.Leu304Phe M5005_RS00495 DNA-directed RNA polymerase subunit alpha SRR27241223.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR27241223.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR27241223.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR27241223.fasta NC_007297 128032 snp A G G:20 A:0 CDS + 1017/1407 339/468 synonymous_variant c.1017A>G p.Pro339Pro M5005_RS00795 short-chain fatty acid transporter SRR27241223.fasta NC_007297 167489 snp C T T:20 C:0 SRR27241223.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR27241223.fasta NC_007297 263894 snp C T T:20 C:0 CDS + 811/924 271/307 missense_variant c.811C>T p.His271Tyr M5005_RS01420 ATP-binding cassette domain-containing protein SRR27241223.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR27241223.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR27241223.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR27241223.fasta NC_007297 343279 del TA T T:19 TA:0 SRR27241223.fasta NC_007297 365664 snp G A A:20 G:0 CDS + 675/960 225/319 synonymous_variant c.675G>A p.Val225Val M5005_RS01960 Gfo/Idh/MocA family protein SRR27241223.fasta NC_007297 448185 snp C A A:20 C:0 CDS - 810/1659 270/552 missense_variant c.810G>T p.Lys270Asn M5005_RS10025 DUF2326 domain-containing protein SRR27241223.fasta NC_007297 469479 snp A G G:20 A:0 CDS - 429/903 143/300 synonymous_variant c.429T>C p.Phe143Phe M5005_RS02500 permease SRR27241223.fasta NC_007297 488457 snp C T T:20 C:0 CDS - 949/1800 317/599 missense_variant c.949G>A p.Ala317Thr M5005_RS02615 pepF oligoendopeptidase F SRR27241223.fasta NC_007297 492497 snp G A A:20 G:0 SRR27241223.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR27241223.fasta NC_007297 528360 snp A T T:20 A:0 SRR27241223.fasta NC_007297 538418 ins G GA GA:19 G:0 SRR27241223.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR27241223.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR27241223.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR27241223.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR27241223.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR27241223.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR27241223.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR27241223.fasta NC_007297 641004 ins G GA GA:19 G:0 CDS + 889/891 297/296 frameshift_variant&stop_lost&splice_region_variant c.888dupA p.Ter297fs M5005_RS03270 RluA family pseudouridine synthase SRR27241223.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR27241223.fasta NC_007297 666922 snp T C C:20 T:0 CDS + 484/912 162/303 missense_variant c.484T>C p.Phe162Leu M5005_RS03380 pfkB 1-phosphofructokinase SRR27241223.fasta NC_007297 686095 snp G A A:20 G:0 CDS + 607/945 203/314 missense_variant c.607G>A p.Val203Ile M5005_RS03475 mvaD diphosphomevalonate decarboxylase SRR27241223.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR27241223.fasta NC_007297 709281 snp A G G:20 A:0 CDS + 441/864 147/287 synonymous_variant c.441A>G p.Gly147Gly M5005_RS03590 transporter substrate-binding domain-containing protein SRR27241223.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR27241223.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR27241223.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR27241223.fasta NC_007297 782255 snp A G G:20 A:0 SRR27241223.fasta NC_007297 782340 del GAACAA G G:17 GAACAA:0 SRR27241223.fasta NC_007297 784467 snp T C C:24 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR27241223.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR27241223.fasta NC_007297 791857 snp C T T:20 C:0 CDS + 306/506 102/167 synonymous_variant c.306C>T p.Phe102Phe M5005_RS03975 YkgJ family cysteine cluster protein SRR27241223.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR27241223.fasta NC_007297 832681 snp G A A:20 G:0 CDS + 220/615 74/204 missense_variant c.220G>A p.Val74Ile M5005_RS04205 SGNH/GDSL hydrolase family protein SRR27241223.fasta NC_007297 849931 snp C T T:20 C:0 CDS + 572/582 191/193 missense_variant c.572C>T p.Ala191Val M5005_RS04295 xanthine phosphoribosyltransferase SRR27241223.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR27241223.fasta NC_007297 908381 del TTAACAGGATAGC T T:17 TTAACAGGATAGC:0 CDS - 348/1224 113/407 conservative_inframe_deletion c.337_348delGCTATCCTGTTA p.Ala113_Leu116del M5005_RS04585 aminoacyltransferase SRR27241223.fasta NC_007297 911621 snp C T T:20 C:0 CDS - 553/867 185/288 missense_variant c.553G>A p.Gly185Ser M5005_RS04600 pyridoxamine kinase SRR27241223.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR27241223.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR27241223.fasta NC_007297 941418 snp G A A:20 G:0 SRR27241223.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR27241223.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR27241223.fasta NC_007297 957886 snp T C C:20 T:0 SRR27241223.fasta NC_007297 959346 snp C T T:20 C:0 SRR27241223.fasta NC_007297 969145 ins T TA TA:19 T:0 SRR27241223.fasta NC_007297 983438 snp G C C:20 G:0 SRR27241223.fasta NC_007297 1003874 snp C T T:20 C:0 CDS - 141/909 47/302 synonymous_variant c.141G>A p.Gly47Gly M5005_RS05075 minor capsid protein SRR27241223.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR27241223.fasta NC_007297 1064592 snp C T T:16 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR27241223.fasta NC_007297 1078022 snp T C C:20 T:0 CDS - 463/1284 155/427 missense_variant c.463A>G p.Asn155Asp M5005_RS05465 spxR CBS-HotDog domain-containing transcription factor SpxR SRR27241223.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR27241223.fasta NC_007297 1093427 snp A G G:20 A:0 CDS - 531/1275 177/424 synonymous_variant c.531T>C p.Tyr177Tyr M5005_RS05530 polysaccharide deacetylase family protein SRR27241223.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR27241223.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR27241223.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR27241223.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR27241223.fasta NC_007297 1221686 del AT A A:19 AT:0 CDS - 19/1038 7/345 frameshift_variant c.19delA p.Ile7fs M5005_RS06245 SepM family pheromone-processing serine protease SRR27241223.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR27241223.fasta NC_007297 1238124 snp G A A:20 G:0 SRR27241223.fasta NC_007297 1238540 snp G A A:20 G:0 CDS - 345/624 115/207 synonymous_variant c.345C>T p.Asp115Asp M5005_RS06330 TlpA disulfide reductase family protein SRR27241223.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR27241223.fasta NC_007297 1239129 snp G A A:20 G:0 CDS - 479/711 160/236 missense_variant c.479C>T p.Ala160Val M5005_RS06335 ccdA2 thiol-disulfide oxidoreductase-associated membrane protein CcdA2 SRR27241223.fasta NC_007297 1247663 snp C G G:20 C:0 CDS - 567/2409 189/802 missense_variant c.567G>C p.Trp189Cys M5005_RS06370 CRISPR-associated helicase/endonuclease Cas3 SRR27241223.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR27241223.fasta NC_007297 1294671 del CT C C:20 CT:0 SRR27241223.fasta NC_007297 1350795 del GT G G:20 GT:0 SRR27241223.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR27241223.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR27241223.fasta NC_007297 1401601 snp T C C:20 T:0 CDS - 342/600 114/199 synonymous_variant c.342A>G p.Glu114Glu M5005_RS07090 phage major tail protein, TP901-1 family SRR27241223.fasta NC_007297 1404135 snp T C C:20 T:0 CDS - 68/888 23/295 missense_variant c.68A>G p.Lys23Arg M5005_RS07115 phage major capsid protein SRR27241223.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR27241223.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR27241223.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR27241223.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR27241223.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR27241223.fasta NC_007297 1535209 snp A G G:20 A:0 SRR27241223.fasta NC_007297 1564140 snp G A A:20 G:0 SRR27241223.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR27241223.fasta NC_007297 1587056 snp T C C:20 T:0 CDS + 794/1581 265/526 missense_variant c.794T>C p.Met265Thr M5005_RS08045 type I restriction-modification system subunit M SRR27241223.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR27241223.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR27241223.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR27241223.fasta NC_007297 1643893 snp G A A:20 G:0 CDS - 120/849 40/282 synonymous_variant c.120C>T p.Ser40Ser M5005_RS08310 helix-turn-helix domain-containing protein SRR27241223.fasta NC_007297 1665863 snp G A A:20 G:0 CDS + 376/978 126/325 missense_variant c.376G>A p.Ala126Thr M5005_RS08410 ABC transporter permease SRR27241223.fasta NC_007297 1681273 del TCCATCAAAG T T:15 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR27241223.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:18 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR27241223.fasta NC_007297 1695313 snp G A A:20 G:0 CDS - 887/930 296/309 missense_variant c.887C>T p.Ala296Val M5005_RS08535 prsA peptidylprolyl isomerase PrsA SRR27241223.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR27241223.fasta NC_007297 1715580 del CT C C:19 CT:0 CDS + 213/912 71/303 frameshift_variant c.213delT p.Phe71fs M5005_RS08635 RluA family pseudouridine synthase SRR27241223.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR27241223.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR27241223.fasta NC_007297 1791480 snp C T T:20 C:0 CDS - 464/642 155/213 missense_variant c.464G>A p.Arg155His M5005_RS08970 NUDIX hydrolase SRR27241223.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR27241223.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR27241223.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR27241223.fasta NC_007297 1834211 del TA T T:19 TA:0 SRR21169766.fasta NC_007297 11480 snp T A A:20 T:0 CDS + 531/1287 177/428 synonymous_variant c.531T>A p.Ser177Ser M5005_RS00050 tilS tRNA lysidine(34) synthetase TilS SRR21169766.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169766.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169766.fasta NC_007297 135539 snp C T T:20 C:0 CDS + 352/2022 118/673 missense_variant c.352C>T p.Arg118Cys M5005_RS00845 V-type ATP synthase subunit I SRR21169766.fasta NC_007297 149124 snp G A A:20 G:0 SRR21169766.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169766.fasta NC_007297 278670 snp G A A:20 G:0 SRR21169766.fasta NC_007297 288831 snp A G G:20 A:0 CDS - 150/1377 50/458 synonymous_variant c.150T>C p.Phe50Phe M5005_RS01555 ktrB potassium uptake transporter channel subunit KtrB SRR21169766.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169766.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169766.fasta NC_007297 302679 snp A C C:20 A:0 CDS + 333/603 111/200 missense_variant c.333A>C p.Gln111His M5005_RS01615 hypothetical protein SRR21169766.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169766.fasta NC_007297 353946 snp G A A:20 G:0 CDS + 46/1014 16/337 missense_variant c.46G>A p.Ala16Thr M5005_RS01900 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta SRR21169766.fasta NC_007297 441998 snp A C C:20 A:0 CDS + 120/969 40/322 missense_variant c.120A>C p.Lys40Asn M5005_RS02355 serine kinase SRR21169766.fasta NC_007297 503870 snp C T T:20 C:0 CDS + 1704/2682 568/893 synonymous_variant c.1704C>T p.Gly568Gly M5005_RS02670 cation-translocating P-type ATPase SRR21169766.fasta NC_007297 511352 snp C A A:20 C:0 CDS - 403/438 135/145 missense_variant c.403G>T p.Asp135Tyr M5005_RS02705 PTS sugar transporter subunit IIA SRR21169766.fasta NC_007297 530171 snp A C C:20 A:0 CDS + 645/978 215/325 synonymous_variant c.645A>C p.Ala215Ala M5005_RS02785 YvcK family protein SRR21169766.fasta NC_007297 535998 snp G A A:20 G:0 CDS + 469/1200 157/399 missense_variant c.469G>A p.Ala157Thr M5005_RS02810 SIS domain-containing protein SRR21169766.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:16 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169766.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169766.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169766.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169766.fasta NC_007297 650271 snp G A A:20 G:0 CDS + 64/711 22/236 missense_variant c.64G>A p.Asp22Asn M5005_RS03305 ABC transporter ATP-binding protein SRR21169766.fasta NC_007297 652547 snp T A A:20 T:0 CDS + 144/1734 48/577 synonymous_variant c.144T>A p.Thr48Thr M5005_RS03315 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein SRR21169766.fasta NC_007297 664470 snp C T T:20 C:0 CDS + 992/1059 331/352 missense_variant c.992C>T p.Ala331Val M5005_RS03365 PTS transporter subunit IIC SRR21169766.fasta NC_007297 671477 snp T A A:20 T:0 CDS - 221/282 74/93 missense_variant c.221A>T p.Asp74Val M5005_RS09755 exotoxin beta-grasp domain-containing protein SRR21169766.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169766.fasta NC_007297 701620 snp G T T:20 G:0 SRR21169766.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169766.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169766.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169766.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169766.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169766.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169766.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169766.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169766.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169766.fasta NC_007297 964285 snp C G G:20 C:0 CDS - 274/2319 92/772 missense_variant c.274G>C p.Val92Leu M5005_RS04860 pcrA DNA helicase PcrA SRR21169766.fasta NC_007297 973978 complex TTGT GTGG GTGG:19 TTGT:0 SRR21169766.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169766.fasta NC_007297 1064592 snp C T T:17 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169766.fasta NC_007297 1092250 snp C A A:20 C:0 CDS + 764/1086 255/361 missense_variant c.764C>A p.Ala255Glu M5005_RS05525 DEAD/DEAH box helicase SRR21169766.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169766.fasta NC_007297 1144383 snp C T T:20 C:0 CDS - 789/1863 263/620 stop_gained c.789G>A p.Trp263* M5005_RS05770 heavy metal translocating P-type ATPase SRR21169766.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169766.fasta NC_007297 1161690 snp A T T:15 A:0 CDS - 17/180 6/59 stop_gained c.17T>A p.Leu6* M5005_RS05895 hypothetical protein SRR21169766.fasta NC_007297 1161707 complex AT GC GC:17 AT:0 SRR21169766.fasta NC_007297 1161784 snp C T T:20 C:0 CDS - 197/225 66/74 missense_variant c.197G>A p.Gly66Asp M5005_RS05900 hypothetical protein SRR21169766.fasta NC_007297 1163104 snp T C C:20 T:0 CDS - 376/1494 126/497 missense_variant c.376A>G p.Arg126Gly M5005_RS05905 hypothetical protein SRR21169766.fasta NC_007297 1163219 snp C T T:20 C:0 CDS - 261/1494 87/497 synonymous_variant c.261G>A p.Gly87Gly M5005_RS05905 hypothetical protein SRR21169766.fasta NC_007297 1165168 snp A G G:13 A:0 SRR21169766.fasta NC_007297 1165178 snp T G G:11 T:0 SRR21169766.fasta NC_007297 1165183 complex AG CC CC:11 AG:0 SRR21169766.fasta NC_007297 1165194 complex ATTTC GTTTA GTTTA:10 ATTTC:0 SRR21169766.fasta NC_007297 1165217 snp T C C:10 T:0 SRR21169766.fasta NC_007297 1165228 del AT A A:10 AT:0 SRR21169766.fasta NC_007297 1165236 complex CTAAAA ACAAAT ACAAAT:10 CTAAAA:0 SRR21169766.fasta NC_007297 1165251 snp A T T:10 A:0 CDS - 336/345 112/114 missense_variant c.336T>A p.Phe112Leu M5005_RS05920 HNH endonuclease signature motif containing protein SRR21169766.fasta NC_007297 1165256 snp C T T:11 C:0 CDS - 331/345 111/114 missense_variant c.331G>A p.Ala111Thr M5005_RS05920 HNH endonuclease signature motif containing protein SRR21169766.fasta NC_007297 1165830 snp C T T:19 C:0 CDS - 285/420 95/139 synonymous_variant c.285G>A p.Leu95Leu M5005_RS05925 DUF1492 domain-containing protein SRR21169766.fasta NC_007297 1165836 snp C T T:19 C:0 CDS - 279/420 93/139 synonymous_variant c.279G>A p.Thr93Thr M5005_RS05925 DUF1492 domain-containing protein SRR21169766.fasta NC_007297 1165875 snp T C C:19 T:0 CDS - 240/420 80/139 synonymous_variant c.240A>G p.Gln80Gln M5005_RS05925 DUF1492 domain-containing protein SRR21169766.fasta NC_007297 1165905 snp A G G:19 A:0 CDS - 210/420 70/139 synonymous_variant c.210T>C p.Ala70Ala M5005_RS05925 DUF1492 domain-containing protein SRR21169766.fasta NC_007297 1165917 complex TTCA CTCG CTCG:18 TTCA:0 CDS - 198/420 65/139 synonymous_variant c.195_198delTGAAinsCGAG p.67 M5005_RS05925 DUF1492 domain-containing protein SRR21169766.fasta NC_007297 1165928 snp T C C:18 T:0 CDS - 187/420 63/139 missense_variant c.187A>G p.Lys63Glu M5005_RS05925 DUF1492 domain-containing protein SRR21169766.fasta NC_007297 1165986 snp C A A:15 C:0 CDS - 129/420 43/139 synonymous_variant c.129G>T p.Val43Val M5005_RS05925 DUF1492 domain-containing protein SRR21169766.fasta NC_007297 1165995 snp A G G:15 A:0 CDS - 120/420 40/139 synonymous_variant c.120T>C p.Ser40Ser M5005_RS05925 DUF1492 domain-containing protein SRR21169766.fasta NC_007297 1166022 complex CGAAGC TGAGGT TGAGGT:11 CGAAGC:0 CDS - 93/420 30/139 missense_variant c.88_93delGCTTCGinsACCTCA p.Ala30Thr M5005_RS05925 DUF1492 domain-containing protein SRR21169766.fasta NC_007297 1166037 complex ATCTC TTCCT TTCCT:11 ATCTC:0 CDS - 78/420 25/139 missense_variant c.74_78delGAGATinsAGGAA p.ArgAsp25GlnGlu M5005_RS05925 DUF1492 domain-containing protein SRR21169766.fasta NC_007297 1166049 snp G A A:11 G:0 CDS - 66/420 22/139 synonymous_variant c.66C>T p.Ile22Ile M5005_RS05925 DUF1492 domain-containing protein SRR21169766.fasta NC_007297 1168748 complex CGTG TGTA TGTA:10 CGTG:0 CDS - 627/798 208/265 synonymous_variant c.624_627delCACGinsTACA p.210 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1168757 snp C T T:10 C:0 CDS - 618/798 206/265 synonymous_variant c.618G>A p.Pro206Pro M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1168766 complex TTTAGTCACTGCA CTTGGTTACCGCG CTTGGTTACCGCG:11 TTTAGTCACTGCA:0 CDS - 609/798 199/265 synonymous_variant c.597_609delTGCAGTGACTAAAinsCGCGGTAACCAAG p.204 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1168792 complex TA CG CG:13 TA:0 CDS - 583/798 194/265 missense_variant c.582_583delTAinsCG p.Lys195Glu M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1168799 snp C T T:13 C:0 CDS - 576/798 192/265 synonymous_variant c.576G>A p.Lys192Lys M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1168805 snp G A A:14 G:0 CDS - 570/798 190/265 synonymous_variant c.570C>T p.Tyr190Tyr M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1168819 snp G A A:15 G:0 CDS - 556/798 186/265 synonymous_variant c.556C>T p.Leu186Leu M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1168847 snp A G G:15 A:0 CDS - 528/798 176/265 synonymous_variant c.528T>C p.Ile176Ile M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1168856 snp A G G:14 A:0 CDS - 519/798 173/265 synonymous_variant c.519T>C p.Tyr173Tyr M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1168862 snp T C C:13 T:0 CDS - 513/798 171/265 synonymous_variant c.513A>G p.Glu171Glu M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1168886 complex TCTAT GCCAC GCCAC:11 TCTAT:0 CDS - 489/798 162/265 missense_variant c.485_489delATAGAinsGTGGC p.AsnArg162SerGly M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1168895 complex GATT AATC AATC:11 GATT:0 CDS - 480/798 159/265 synonymous_variant c.477_480delAATCinsGATT p.161 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1168960 snp A G G:15 A:0 CDS - 415/798 139/265 synonymous_variant c.415T>C p.Leu139Leu M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1168987 snp C T T:15 C:0 CDS - 388/798 130/265 missense_variant c.388G>A p.Val130Ile M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1169018 snp T C C:16 T:0 CDS - 357/798 119/265 synonymous_variant c.357A>G p.Lys119Lys M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1169033 complex TATG GATA GATA:15 TATG:0 CDS - 342/798 113/265 synonymous_variant c.339_342delCATAinsTATC p.115 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1169042 snp G A A:16 G:0 CDS - 333/798 111/265 synonymous_variant c.333C>T p.Phe111Phe M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1169051 complex GTCAT ATCAC ATCAC:15 GTCAT:0 CDS - 324/798 107/265 missense_variant c.320_324delATGACinsGTGAT p.Asn107Ser M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1169063 complex TGCT AGCG AGCG:15 TGCT:0 CDS - 312/798 103/265 missense_variant c.309_312delAGCAinsCGCT p.Glu103Asp M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1169081 complex TGCG AGCA AGCA:13 TGCG:0 CDS - 294/798 97/265 synonymous_variant c.291_294delCGCAinsTGCT p.99 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1169090 complex ATAGTCT GTAATCC GTAATCC:13 ATAGTCT:0 CDS - 285/798 93/265 synonymous_variant c.279_285delAGACTATinsGGATTAC p.96 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1169102 complex GAGCTGA TAATTGG TAATTGG:13 GAGCTGA:0 CDS - 273/798 89/265 synonymous_variant c.267_273delTCAGCTCinsCCAATTA p.92 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1169114 snp A T T:15 A:0 CDS - 261/798 87/265 synonymous_variant c.261T>A p.Thr87Thr M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1169119 snp T C C:15 T:0 CDS - 256/798 86/265 missense_variant c.256A>G p.Thr86Ala M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1169125 snp T G G:16 T:0 CDS - 250/798 84/265 synonymous_variant c.250A>C p.Arg84Arg M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1169145 snp T C C:16 T:0 CDS - 230/798 77/265 missense_variant c.230A>G p.Asp77Gly M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1169175 complex GC TT TT:13 GC:0 CDS - 200/798 67/265 missense_variant c.199_200delGCinsAA p.Ala67Lys M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1169218 snp G A A:10 G:0 CDS - 157/798 53/265 synonymous_variant c.157C>T p.Leu53Leu M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein SRR21169766.fasta NC_007297 1169854 snp T G G:20 T:0 CDS - 447/930 149/309 missense_variant c.447A>C p.Leu149Phe M5005_RS05955 recombinase RecT SRR21169766.fasta NC_007297 1170004 snp A C C:20 A:0 CDS - 297/930 99/309 synonymous_variant c.297T>G p.Ala99Ala M5005_RS05955 recombinase RecT SRR21169766.fasta NC_007297 1170141 snp C T T:20 C:0 CDS - 160/930 54/309 missense_variant c.160G>A p.Glu54Lys M5005_RS05955 recombinase RecT SRR21169766.fasta NC_007297 1170196 snp T C C:19 T:0 CDS - 105/930 35/309 synonymous_variant c.105A>G p.Ala35Ala M5005_RS05955 recombinase RecT SRR21169766.fasta NC_007297 1170246 snp T C C:19 T:0 CDS - 55/930 19/309 missense_variant c.55A>G p.Ile19Val M5005_RS05955 recombinase RecT SRR21169766.fasta NC_007297 1170378 complex AACATCC CACTGAT CACTGAT:17 AACATCC:0 CDS - 255/330 83/109 missense_variant c.249_255delGGATGTTinsATCAGTG p.Asp84Ser M5005_RS05960 hypothetical protein SRR21169766.fasta NC_007297 1170463 ins A AT AT:18 A:0 CDS - 169/330 57/109 frameshift_variant c.169dupA p.Ile57fs M5005_RS05960 hypothetical protein SRR21169766.fasta NC_007297 1170646 complex CC TT TT:20 CC:0 SRR21169766.fasta NC_007297 1170805 snp C A A:20 C:0 CDS - 90/207 30/68 missense_variant c.90G>T p.Glu30Asp M5005_RS05965 hypothetical protein SRR21169766.fasta NC_007297 1170899 snp T C C:20 T:0 SRR21169766.fasta NC_007297 1170921 snp G A A:20 G:0 CDS - 123/141 41/46 synonymous_variant c.123C>T p.Arg41Arg M5005_RS09935 hypothetical protein SRR21169766.fasta NC_007297 1170944 snp T C C:20 T:0 CDS - 100/141 34/46 missense_variant c.100A>G p.Met34Val M5005_RS09935 hypothetical protein SRR21169766.fasta NC_007297 1170949 complex TGTGA CGTGC CGTGC:20 TGTGA:0 CDS - 95/141 31/46 missense_variant c.91_95delTCACAinsGCACG p.SerGln31AlaArg M5005_RS09935 hypothetical protein SRR21169766.fasta NC_007297 1170963 complex AAGCCCG TAGTCCA TAGTCCA:19 AAGCCCG:0 CDS - 81/141 25/46 synonymous_variant c.75_81delCGGGCTTinsTGGACTA p.28 M5005_RS09935 hypothetical protein SRR21169766.fasta NC_007297 1170999 snp G A A:20 G:0 CDS - 45/141 15/46 synonymous_variant c.45C>T p.Ser15Ser M5005_RS09935 hypothetical protein SRR21169766.fasta NC_007297 1171007 snp T G G:20 T:0 CDS - 37/141 13/46 synonymous_variant c.37A>C p.Arg13Arg M5005_RS09935 hypothetical protein SRR21169766.fasta NC_007297 1171032 snp C T T:20 C:0 CDS - 12/141 4/46 synonymous_variant c.12G>A p.Gln4Gln M5005_RS09935 hypothetical protein SRR21169766.fasta NC_007297 1171047 snp A G G:20 A:0 CDS - 227/234 76/77 missense_variant c.227T>C p.Val76Ala M5005_RS05970 hypothetical protein SRR21169766.fasta NC_007297 1171076 complex TAAT CAAC CAAC:20 TAAT:0 CDS - 198/234 65/77 synonymous_variant c.195_198delATTAinsGTTG p.67 M5005_RS05970 hypothetical protein SRR21169766.fasta NC_007297 1171106 snp G A A:20 G:0 CDS - 168/234 56/77 synonymous_variant c.168C>T p.Thr56Thr M5005_RS05970 hypothetical protein SRR21169766.fasta NC_007297 1172361 snp A G G:11 A:0 CDS - 265/312 89/103 missense_variant c.265T>C p.Ser89Pro M5005_RS05990 hypothetical protein SRR21169766.fasta NC_007297 1172383 snp A G G:13 A:0 CDS - 243/312 81/103 synonymous_variant c.243T>C p.Tyr81Tyr M5005_RS05990 hypothetical protein SRR21169766.fasta NC_007297 1172427 snp C T T:16 C:0 CDS - 199/312 67/103 missense_variant c.199G>A p.Glu67Lys M5005_RS05990 hypothetical protein SRR21169766.fasta NC_007297 1177947 snp G A A:20 G:0 CDS + 267/1143 89/380 synonymous_variant c.267G>A p.Arg89Arg M5005_RS06035 tyrosine-type recombinase/integrase SRR21169766.fasta NC_007297 1177953 snp C T T:20 C:0 CDS + 273/1143 91/380 synonymous_variant c.273C>T p.Asn91Asn M5005_RS06035 tyrosine-type recombinase/integrase SRR21169766.fasta NC_007297 1178265 snp T A A:20 T:0 CDS + 585/1143 195/380 synonymous_variant c.585T>A p.Arg195Arg M5005_RS06035 tyrosine-type recombinase/integrase SRR21169766.fasta NC_007297 1178769 snp G T T:20 G:0 CDS + 1089/1143 363/380 synonymous_variant c.1089G>T p.Thr363Thr M5005_RS06035 tyrosine-type recombinase/integrase SRR21169766.fasta NC_007297 1178842 snp A C C:20 A:0 SRR21169766.fasta NC_007297 1178878 complex GG AC AC:19 GG:0 SRR21169766.fasta NC_007297 1178887 del GA G G:19 GA:0 SRR21169766.fasta NC_007297 1178905 snp C A A:20 C:0 SRR21169766.fasta NC_007297 1200286 snp G A A:20 G:0 CDS - 951/2802 317/933 synonymous_variant c.951C>T p.Thr317Thr M5005_RS06140 ileS isoleucine--tRNA ligase SRR21169766.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169766.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169766.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169766.fasta NC_007297 1248373 snp G A A:20 G:0 SRR21169766.fasta NC_007297 1355057 del TA T T:18 TA:0 SRR21169766.fasta NC_007297 1385676 snp C T T:20 C:0 SRR21169766.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169766.fasta NC_007297 1400979 snp G A A:20 G:0 CDS - 311/456 104/151 missense_variant c.311C>T p.Ser104Phe M5005_RS07085 tail assembly chaperone SRR21169766.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169766.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169766.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169766.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169766.fasta NC_007297 1571746 snp G A A:20 G:0 CDS - 460/561 154/186 stop_gained c.460C>T p.Arg154* M5005_RS07975 TIGR01440 family protein SRR21169766.fasta NC_007297 1589327 snp G T T:20 G:0 CDS - 1218/1563 406/520 synonymous_variant c.1218C>A p.Thr406Thr M5005_RS08060 ATP-binding protein SRR21169766.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169766.fasta NC_007297 1627738 snp C T T:20 C:0 CDS - 2173/4398 725/1465 missense_variant c.2173G>A p.Asp725Asn M5005_RS08260 PolC-type DNA polymerase III SRR21169766.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169766.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169766.fasta NC_007297 1681928 ins A AT AT:19 A:0 CDS - 19/942 7/313 frameshift_variant c.19dupA p.Ile7fs M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169766.fasta NC_007297 1681933 ins A ATTTCT ATTTCT:17 A:0 CDS - 14/942 5/313 frameshift_variant c.10_14dupAGAAA p.Asn5fs M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169766.fasta NC_007297 1685608 snp T G G:20 T:0 SRR21169766.fasta NC_007297 1685638 snp T A A:20 T:0 SRR21169766.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169766.fasta NC_007297 1754171 snp T C C:20 T:0 SRR21169766.fasta NC_007297 1764171 snp T A A:20 T:0 SRR21169766.fasta NC_007297 1768820 ins C CT CT:19 C:0 CDS - 371/561 124/186 frameshift_variant c.371dupA p.Pro125fs M5005_RS08855 DNA-3-methyladenine glycosylase I SRR21169766.fasta NC_007297 1786995 snp C T T:20 C:0 CDS + 134/912 45/303 missense_variant c.134C>T p.Pro45Leu M5005_RS08945 transcriptional regulator SRR21169766.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169766.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:9 A:0 ERR1359441.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359441.fasta NC_007297 73671 ins T TA TA:19 T:0 ERR1359441.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359441.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1359441.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359441.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359441.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359441.fasta NC_007297 116602 snp T C C:20 T:0 CDS - 515/1494 172/497 missense_variant c.515A>G p.Lys172Arg M5005_RS00740 rofA transcriptional regulator RofA ERR1359441.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359441.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359441.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359441.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359441.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359441.fasta NC_007297 343279 del TA T T:19 TA:0 ERR1359441.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359441.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359441.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359441.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359441.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359441.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359441.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359441.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359441.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359441.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359441.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359441.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359441.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359441.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359441.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359441.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359441.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359441.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359441.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359441.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359441.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359441.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359441.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359441.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359441.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359441.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359441.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359441.fasta NC_007297 1064592 snp C T T:10 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359441.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359441.fasta NC_007297 1118949 snp C T T:20 C:0 CDS + 162/1221 54/406 synonymous_variant c.162C>T p.Leu54Leu M5005_RS05650 DUF3114 domain-containing protein ERR1359441.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359441.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359441.fasta NC_007297 1173520 snp G A A:20 G:0 CDS + 85/807 29/268 missense_variant c.85G>A p.Gly29Ser M5005_RS06005 TIGR02391 family protein ERR1359441.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359441.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359441.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359441.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359441.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359441.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359441.fasta NC_007297 1294671 del CT C C:20 CT:0 ERR1359441.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359441.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359441.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359441.fasta NC_007297 1418931 ins C CT CT:20 C:0 CDS - 36/558 12/185 frameshift_variant c.36dupA p.Val13fs M5005_RS07195 DUF2815 family protein ERR1359441.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359441.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359441.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359441.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359441.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359441.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359441.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359441.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359441.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359441.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359441.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359441.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359441.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359441.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359441.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359441.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169792.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169792.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169792.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169792.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169792.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169792.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169792.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169792.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169792.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169792.fasta NC_007297 294838 snp T C C:20 T:0 SRR21169792.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169792.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169792.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169792.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169792.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169792.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169792.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169792.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169792.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169792.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169792.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169792.fasta NC_007297 636132 snp G A A:20 G:0 CDS + 96/1194 32/397 synonymous_variant c.96G>A p.Gly32Gly M5005_RS03240 CapA family protein SRR21169792.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169792.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169792.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169792.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169792.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169792.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169792.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169792.fasta NC_007297 787690 snp A G G:20 A:0 CDS + 680/828 227/275 missense_variant c.680A>G p.Asp227Gly M5005_RS03955 PTS system mannose/fructose/sorbose family transporter subunit IID SRR21169792.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169792.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169792.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169792.fasta NC_007297 859271 snp G A A:20 G:0 CDS + 264/1725 88/574 missense_variant c.264G>A p.Met88Ile M5005_RS04355 ABC transporter ATP-binding protein SRR21169792.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169792.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169792.fasta NC_007297 939075 snp A T T:20 A:0 CDS - 2241/2538 747/845 missense_variant c.2241T>A p.Asn747Lys M5005_RS04730 M1 family metallopeptidase SRR21169792.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169792.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169792.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169792.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169792.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169792.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169792.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169792.fasta NC_007297 1067012 snp C A A:20 C:0 CDS - 105/1221 35/406 missense_variant c.105G>T p.Met35Ile M5005_RS05415 MFS transporter SRR21169792.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169792.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169792.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169792.fasta NC_007297 1208106 snp T C C:20 T:0 CDS - 631/1149 211/382 missense_variant c.631A>G p.Ile211Val M5005_RS06180 cell division protein FtsQ/DivIB SRR21169792.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169792.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169792.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169792.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169792.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169792.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169792.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169792.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169792.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169792.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169792.fasta NC_007297 1408387 snp A G G:20 A:0 CDS - 1272/1278 424/425 synonymous_variant c.1272T>C p.Tyr424Tyr M5005_RS07145 PBSX family phage terminase large subunit SRR21169792.fasta NC_007297 1420246 snp G A A:20 G:0 CDS - 289/1155 97/384 synonymous_variant c.289C>T p.Leu97Leu M5005_RS07205 DUF2800 domain-containing protein SRR21169792.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169792.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169792.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169792.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169792.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169792.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169792.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169792.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169792.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169792.fasta NC_007297 1681273 del TCCATCAAAG T T:15 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169792.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:19 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169792.fasta NC_007297 1681776 del ACCAGTCATCTTCAGG A A:16 ACCAGTCATCTTCAGG:0 CDS - 171/942 53/313 conservative_inframe_deletion c.157_171delCCTGAAGATGACTGG p.Pro53_Trp57del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169792.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169792.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169792.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169792.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169792.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169792.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169812.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169812.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169812.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169812.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169812.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169812.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169812.fasta NC_007297 199451 snp C T T:20 C:0 CDS - 805/1017 269/338 missense_variant c.805G>A p.Gly269Ser M5005_RS01140 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase SRR21169812.fasta NC_007297 241653 snp A G G:20 A:0 SRR21169812.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169812.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169812.fasta NC_007297 293874 snp G A A:20 G:0 CDS + 721/1502 241/499 missense_variant c.721G>A p.Ala241Thr M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169812.fasta NC_007297 296501 snp A G G:20 A:0 CDS + 1154/1176 385/391 missense_variant c.1154A>G p.Asn385Ser M5005_RS01595 replication initiation and membrane attachment family protein SRR21169812.fasta NC_007297 307971 snp A G G:20 A:0 CDS - 662/924 221/307 missense_variant c.662T>C p.Met221Thr M5005_RS01640 yidC membrane protein insertase YidC SRR21169812.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169812.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169812.fasta NC_007297 447065 del AT A A:19 AT:0 SRR21169812.fasta NC_007297 484099 snp G A A:20 G:0 CDS - 21/480 7/159 synonymous_variant c.21C>T p.Leu7Leu M5005_RS02585 aminoacyl-tRNA deacylase SRR21169812.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169812.fasta NC_007297 522609 snp C T T:20 C:0 CDS + 652/765 218/254 missense_variant c.652C>T p.Arg218Cys M5005_RS02760 (S)-acetoin forming diacetyl reductase SRR21169812.fasta NC_007297 529421 snp G C C:20 G:0 CDS + 782/891 261/296 missense_variant c.782G>C p.Arg261Pro M5005_RS02780 rapZ RNase adapter RapZ SRR21169812.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169812.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169812.fasta NC_007297 576801 snp G A A:20 G:0 CDS + 148/495 50/164 missense_variant c.148G>A p.Asp50Asn M5005_RS02970 atpF F0F1 ATP synthase subunit B SRR21169812.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169812.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169812.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169812.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169812.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169812.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169812.fasta NC_007297 735651 snp C T T:20 C:0 SRR21169812.fasta NC_007297 736742 snp C T T:20 C:0 CDS + 1054/1107 352/368 missense_variant c.1054C>T p.Pro352Ser M5005_RS03730 NAD(P)/FAD-dependent oxidoreductase SRR21169812.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169812.fasta NC_007297 773788 ins G GA GA:20 G:0 CDS + 424/4107 142/1368 frameshift_variant c.423dupA p.Leu142fs M5005_RS03890 cas9 type II CRISPR RNA-guided endonuclease Cas9 SRR21169812.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169812.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169812.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169812.fasta NC_007297 792831 del CT C C:18 CT:0 CDS + 23/690 8/229 frameshift_variant c.23delT p.Phe8fs M5005_RS03985 YjjG family noncanonical pyrimidine nucleotidase SRR21169812.fasta NC_007297 823817 ins C CT CT:20 C:0 CDS - 462/666 154/221 frameshift_variant c.462dupA p.Gly155fs M5005_RS04170 response regulator SRR21169812.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169812.fasta NC_007297 937115 snp T C C:20 T:0 CDS - 651/1311 217/436 synonymous_variant c.651A>G p.Glu217Glu M5005_RS04720 sensor histidine kinase SRR21169812.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169812.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169812.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169812.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169812.fasta NC_007297 992082 snp G A A:20 G:0 CDS - 2687/3441 896/1146 missense_variant c.2687C>T p.Ala896Val M5005_RS05005 glucosaminidase domain-containing protein SRR21169812.fasta NC_007297 1008001 ins G GC GC:18 G:0 SRR21169812.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169812.fasta NC_007297 1058409 snp C T T:20 C:0 CDS - 463/1095 155/364 missense_variant c.463G>A p.Gly155Ser M5005_RS05370 DUF871 domain-containing protein SRR21169812.fasta NC_007297 1064592 snp C T T:17 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169812.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169812.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169812.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169812.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169812.fasta NC_007297 1213773 snp A G G:20 A:0 SRR21169812.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169812.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169812.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169812.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169812.fasta NC_007297 1285353 del AAAAAGCTTAAATTTGTTATACAACAAATTTAAGCTTTTTATCATT A A:12 AAAAAGCTTAAATTTGTTATACAACAAATTTAAGCTTTTTATCATT:0 SRR21169812.fasta NC_007297 1328056 snp G A A:20 G:0 CDS - 568/1455 190/484 missense_variant c.568C>T p.Arg190Cys M5005_RS06740 nicotinate phosphoribosyltransferase SRR21169812.fasta NC_007297 1369054 snp G A A:20 G:0 CDS - 833/978 278/325 missense_variant c.833C>T p.Ala278Val M5005_RS06925 lacD tagatose-bisphosphate aldolase SRR21169812.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169812.fasta NC_007297 1396485 snp G A A:20 G:0 CDS - 4027/4383 1343/1460 synonymous_variant c.4027C>T p.Leu1343Leu M5005_RS07075 tape measure protein SRR21169812.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169812.fasta NC_007297 1416033 snp G A A:20 G:0 CDS - 408/2385 136/794 synonymous_variant c.408C>T p.Ile136Ile M5005_RS07185 phage/plasmid primase, P4 family SRR21169812.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169812.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169812.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169812.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169812.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169812.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169812.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169812.fasta NC_007297 1694174 del CT C C:18 CT:0 SRR21169812.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169812.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169812.fasta NC_007297 1752093 snp A G G:20 A:0 CDS - 1947/2025 649/674 synonymous_variant c.1947T>C p.Val649Val M5005_RS08775 treP PTS system trehalose-specific EIIBC component SRR21169812.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169812.fasta NC_007297 1815569 snp A G G:20 A:0 CDS - 162/1026 54/341 synonymous_variant c.162T>C p.Phe54Phe M5005_RS09085 helix-turn-helix domain-containing protein SRR21169812.fasta NC_007297 1819166 snp G A A:20 G:0 CDS + 421/1260 141/419 missense_variant c.421G>A p.Ala141Thr M5005_RS09100 hasA hyaluronan synthase HasA SRR21169812.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169800.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169800.fasta NC_007297 64197 snp T C C:20 T:0 SRR21169800.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169800.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169800.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169800.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169800.fasta NC_007297 126007 snp C T T:20 C:0 CDS - 661/666 221/221 missense_variant c.661G>A p.Glu221Lys M5005_RS00790 hypothetical protein SRR21169800.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169800.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169800.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169800.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169800.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169800.fasta NC_007297 343279 del TA T T:20 TA:0 SRR21169800.fasta NC_007297 458987 del AC A A:19 AC:0 SRR21169800.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169800.fasta NC_007297 516326 del CA C C:19 CA:0 SRR21169800.fasta NC_007297 528231 snp A G G:20 A:0 SRR21169800.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169800.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169800.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169800.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169800.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169800.fasta NC_007297 595011 snp G A A:20 G:0 CDS + 2486/3216 829/1071 missense_variant c.2486G>A p.Ser829Asn M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169800.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169800.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169800.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169800.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169800.fasta NC_007297 681603 snp A G G:20 A:0 SRR21169800.fasta NC_007297 684809 snp A G G:20 A:0 CDS + 181/879 61/292 missense_variant c.181A>G p.Ile61Val M5005_RS03470 mvk mevalonate kinase SRR21169800.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169800.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169800.fasta NC_007297 741899 snp C A A:20 C:0 CDS + 375/1248 125/415 synonymous_variant c.375C>A p.Gly125Gly M5005_RS03760 tetratricopeptide repeat protein SRR21169800.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169800.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169800.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169800.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169800.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169800.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169800.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169800.fasta NC_007297 854429 snp C T T:20 C:0 CDS + 145/840 49/279 missense_variant c.145C>T p.Pro49Ser M5005_RS04325 prmC peptide chain release factor N(5)-glutamine methyltransferase SRR21169800.fasta NC_007297 899397 snp G C C:20 G:0 CDS - 834/1071 278/356 synonymous_variant c.834C>G p.Gly278Gly M5005_RS04550 xerS tyrosine recombinase XerS SRR21169800.fasta NC_007297 916225 snp C A A:20 C:0 SRR21169800.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169800.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169800.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169800.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169800.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169800.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169800.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169800.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169800.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169800.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169800.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169800.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169800.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169800.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169800.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169800.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169800.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169800.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169800.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169800.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169800.fasta NC_007297 1391003 snp C A A:20 C:0 CDS - 583/1908 195/635 missense_variant c.583G>T p.Ala195Ser M5005_RS07050 gp58-like family protein SRR21169800.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169800.fasta NC_007297 1404939 complex TTTA ATTT ATTT:19 TTTA:0 SRR21169800.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169800.fasta NC_007297 1408878 ins C CA CA:18 C:0 CDS - 780/1278 260/425 frameshift_variant c.780dupT p.Gly261fs M5005_RS07145 PBSX family phage terminase large subunit SRR21169800.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169800.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169800.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169800.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169800.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169800.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169800.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169800.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169800.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169800.fasta NC_007297 1681273 del TCCATCAAAG T T:15 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169800.fasta NC_007297 1681791 del GCCAGTCATCTCCAGA G G:15 GCCAGTCATCTCCAGA:1 CDS - 156/942 48/313 conservative_inframe_deletion c.142_156delTCTGGAGATGACTGG p.Ser48_Trp52del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169800.fasta NC_007297 1694316 snp C T T:20 C:0 CDS - 199/297 67/98 missense_variant c.199G>A p.Val67Ile M5005_RS08525 DUF4298 domain-containing protein SRR21169800.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169800.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169800.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169800.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169800.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169800.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein ERR1359582.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359582.fasta NC_007297 73671 ins T TA TA:19 T:0 ERR1359582.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359582.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1359582.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359582.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359582.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359582.fasta NC_007297 116602 snp T C C:20 T:0 CDS - 515/1494 172/497 missense_variant c.515A>G p.Lys172Arg M5005_RS00740 rofA transcriptional regulator RofA ERR1359582.fasta NC_007297 118159 snp G A A:20 G:0 CDS + 781/2274 261/757 missense_variant c.781G>A p.Gly261Arg M5005_RS00745 cpa FCT-2 pilus tip adhesin ERR1359582.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359582.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359582.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359582.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359582.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359582.fasta NC_007297 343279 del TA T T:19 TA:0 ERR1359582.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359582.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359582.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359582.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359582.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359582.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359582.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359582.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359582.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359582.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359582.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359582.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359582.fasta NC_007297 757214 snp T C C:20 T:0 CDS + 87/1764 29/587 synonymous_variant c.87T>C p.Thr29Thr M5005_RS03825 lpdA dihydrolipoyl dehydrogenase ERR1359582.fasta NC_007297 757226 snp C T T:20 C:0 CDS + 99/1764 33/587 synonymous_variant c.99C>T p.Gly33Gly M5005_RS03825 lpdA dihydrolipoyl dehydrogenase ERR1359582.fasta NC_007297 757232 snp T C C:20 T:0 CDS + 105/1764 35/587 synonymous_variant c.105T>C p.Ile35Ile M5005_RS03825 lpdA dihydrolipoyl dehydrogenase ERR1359582.fasta NC_007297 757253 snp T C C:20 T:0 CDS + 126/1764 42/587 synonymous_variant c.126T>C p.Asp42Asp M5005_RS03825 lpdA dihydrolipoyl dehydrogenase ERR1359582.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359582.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359582.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359582.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359582.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359582.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359582.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359582.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359582.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359582.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359582.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359582.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359582.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359582.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359582.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359582.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359582.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359582.fasta NC_007297 1112581 snp A G G:20 A:0 ERR1359582.fasta NC_007297 1118949 snp C T T:20 C:0 CDS + 162/1221 54/406 synonymous_variant c.162C>T p.Leu54Leu M5005_RS05650 DUF3114 domain-containing protein ERR1359582.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359582.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359582.fasta NC_007297 1173520 snp G A A:20 G:0 CDS + 85/807 29/268 missense_variant c.85G>A p.Gly29Ser M5005_RS06005 TIGR02391 family protein ERR1359582.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359582.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359582.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359582.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359582.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359582.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359582.fasta NC_007297 1294671 del CT C C:19 CT:0 ERR1359582.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359582.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359582.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359582.fasta NC_007297 1418931 ins C CT CT:20 C:0 CDS - 36/558 12/185 frameshift_variant c.36dupA p.Val13fs M5005_RS07195 DUF2815 family protein ERR1359582.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359582.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359582.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359582.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359582.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359582.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359582.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359582.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359582.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359582.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359582.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359582.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359582.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359582.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359582.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359582.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169975.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169975.fasta NC_007297 64137 del GT G G:19 GT:0 SRR21169975.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169975.fasta NC_007297 132855 del AT A A:19 AT:0 SRR21169975.fasta NC_007297 136798 snp C T T:20 C:0 CDS + 1611/2022 537/673 synonymous_variant c.1611C>T p.Gly537Gly M5005_RS00845 V-type ATP synthase subunit I SRR21169975.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169975.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169975.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169975.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169975.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169975.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169975.fasta NC_007297 579638 snp C T T:20 C:0 CDS + 415/876 139/291 missense_variant c.415C>T p.Leu139Phe M5005_RS02985 F0F1 ATP synthase subunit gamma SRR21169975.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169975.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169975.fasta NC_007297 671080 snp C T T:20 C:0 CDS - 112/291 38/96 missense_variant c.112G>A p.Glu38Lys M5005_RS03400 IS3 family transposase SRR21169975.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169975.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169975.fasta NC_007297 775052 snp C T T:20 C:0 CDS + 1680/4107 560/1368 synonymous_variant c.1680C>T p.Thr560Thr M5005_RS03890 cas9 type II CRISPR RNA-guided endonuclease Cas9 SRR21169975.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169975.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169975.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169975.fasta NC_007297 800948 del AT A A:19 AT:0 SRR21169975.fasta NC_007297 804866 snp C T T:20 C:0 SRR21169975.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169975.fasta NC_007297 852300 snp A G G:20 A:0 CDS - 165/186 55/61 synonymous_variant c.165T>C p.Gly55Gly M5005_RS04310 4-oxalocrotonate tautomerase SRR21169975.fasta NC_007297 862495 snp C T T:20 C:0 SRR21169975.fasta NC_007297 878316 snp G A A:20 G:0 CDS + 64/546 22/181 missense_variant c.64G>A p.Ala22Thr M5005_RS04435 PTS sugar transporter subunit IIC SRR21169975.fasta NC_007297 886550 snp G A A:20 G:0 CDS - 722/885 241/294 missense_variant c.722C>T p.Ala241Val M5005_RS04480 citG triphosphoribosyl-dephospho-CoA synthase CitG SRR21169975.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169975.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169975.fasta NC_007297 950802 snp C T T:20 C:0 CDS - 521/885 174/294 missense_variant c.521G>A p.Ser174Asn M5005_RS04790 truB tRNA pseudouridine(55) synthase TruB SRR21169975.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169975.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169975.fasta NC_007297 1023153 snp T C C:20 T:0 CDS - 2054/2265 685/754 missense_variant c.2054A>G p.Asp685Gly M5005_RS05230 glgP glycogen/starch/alpha-glucan family phosphorylase SRR21169975.fasta NC_007297 1046021 snp T C C:20 T:0 CDS - 1168/1539 390/512 missense_variant c.1168A>G p.Thr390Ala M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169975.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169975.fasta NC_007297 1064592 snp C T T:17 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169975.fasta NC_007297 1080109 snp T A A:20 T:0 SRR21169975.fasta NC_007297 1093967 snp C T T:20 C:0 SRR21169975.fasta NC_007297 1101282 snp T C C:20 T:0 CDS + 495/960 165/319 synonymous_variant c.495T>C p.Phe165Phe M5005_RS05560 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta SRR21169975.fasta NC_007297 1120265 snp G A A:20 G:0 CDS - 448/591 150/196 missense_variant c.448C>T p.Pro150Ser M5005_RS05655 serine hydrolase SRR21169975.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169975.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169975.fasta NC_007297 1165054 snp C T T:20 C:0 CDS - 40/357 14/118 missense_variant c.40G>A p.Ala14Thr M5005_RS05915 hypothetical protein SRR21169975.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169975.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169975.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169975.fasta NC_007297 1241376 snp G A A:20 G:0 CDS - 164/1026 55/341 missense_variant c.164C>T p.Ala55Val M5005_RS06345 cas1c type I-C CRISPR-associated endonuclease Cas1c SRR21169975.fasta NC_007297 1268870 snp A G G:20 A:0 CDS - 451/951 151/316 missense_variant c.451T>C p.Phe151Leu M5005_RS06465 ABC transporter permease SRR21169975.fasta NC_007297 1339838 del CA C C:20 CA:0 CDS - 121/141 41/46 frameshift_variant c.121delT p.Trp41fs M5005_RS09840 hypothetical protein SRR21169975.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169975.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169975.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169975.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169975.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169975.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169975.fasta NC_007297 1627880 snp G T T:20 G:0 CDS - 2031/4398 677/1465 synonymous_variant c.2031C>A p.Ala677Ala M5005_RS08260 PolC-type DNA polymerase III SRR21169975.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169975.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169975.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169975.fasta NC_007297 1749074 snp G A A:20 G:0 CDS - 1039/1896 347/631 missense_variant c.1039C>T p.Arg347Cys M5005_RS08765 pepO endopeptidase PepO SRR21169975.fasta NC_007297 1759271 snp C T T:20 C:0 CDS - 368/936 123/311 missense_variant c.368G>A p.Arg123His M5005_RS08810 Gfo/Idh/MocA family protein SRR21169975.fasta NC_007297 1790858 snp C T T:20 C:0 CDS + 446/843 149/280 missense_variant c.446C>T p.Ala149Val M5005_RS08965 DUF368 domain-containing protein SRR21169975.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169975.fasta NC_007297 1823595 snp T C C:20 T:0 CDS + 528/1107 176/368 synonymous_variant c.528T>C p.Ala176Ala M5005_RS09120 recF DNA replication/repair protein RecF SRR21169975.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169975.fasta NC_007297 1834084 snp T C C:20 T:0 SRR21169975.fasta NC_007297 1836351 snp G C C:20 G:0 ERR1359627.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359627.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359627.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1359627.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359627.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359627.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359627.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359627.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359627.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359627.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359627.fasta NC_007297 318984 ins C CA CA:20 C:0 ERR1359627.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359627.fasta NC_007297 343279 del TA T T:19 TA:0 ERR1359627.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359627.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359627.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359627.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359627.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359627.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359627.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359627.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359627.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359627.fasta NC_007297 629986 snp G A A:20 G:0 ERR1359627.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359627.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359627.fasta NC_007297 712345 snp C G G:20 C:0 CDS + 1045/1269 349/422 missense_variant c.1045C>G p.Leu349Val M5005_RS03605 dihydroorotase ERR1359627.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359627.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359627.fasta NC_007297 768641 snp C T T:20 C:0 CDS + 1230/1356 410/451 synonymous_variant c.1230C>T p.Leu410Leu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359627.fasta NC_007297 779596 snp A G G:20 A:0 ERR1359627.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359627.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359627.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359627.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359627.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359627.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359627.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359627.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359627.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359627.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359627.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359627.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359627.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359627.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359627.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359627.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359627.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359627.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359627.fasta NC_007297 1205792 snp A G G:20 A:0 CDS - 197/1320 66/439 missense_variant c.197T>C p.Leu66Ser M5005_RS06170 ftsZ cell division protein FtsZ ERR1359627.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359627.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359627.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359627.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359627.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359627.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359627.fasta NC_007297 1294671 del CT C C:20 CT:0 ERR1359627.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359627.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359627.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359627.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359627.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359627.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359627.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359627.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359627.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359627.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359627.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359627.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359627.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359627.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359627.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359627.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359627.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359627.fasta NC_007297 1828335 snp T C C:20 T:0 misc_binding - intragenic_variant n.1828335T>C ERR1359627.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein ERR1359515.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359515.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359515.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1359515.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359515.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359515.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359515.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359515.fasta NC_007297 224736 snp C T T:20 C:0 CDS - 447/831 149/276 missense_variant c.447G>A p.Met149Ile M5005_RS01260 MurR/RpiR family transcriptional regulator ERR1359515.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359515.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359515.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359515.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359515.fasta NC_007297 341740 del CT C C:18 CT:0 ERR1359515.fasta NC_007297 343279 del TA T T:20 TA:0 ERR1359515.fasta NC_007297 390989 snp C A A:20 C:0 CDS + 237/408 79/135 synonymous_variant c.237C>A p.Val79Val M5005_RS02100 diacylglycerol kinase family protein ERR1359515.fasta NC_007297 457762 snp G A A:20 G:0 CDS - 952/1119 318/372 missense_variant c.952C>T p.Pro318Ser M5005_RS09375 IS3 family transposase ERR1359515.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359515.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359515.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359515.fasta NC_007297 559063 snp T C C:20 T:0 CDS - 112/117 38/38 missense_variant c.112A>G p.Lys38Glu M5005_RS09750 IS3 family transposase ERR1359515.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359515.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359515.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359515.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359515.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359515.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359515.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359515.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359515.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359515.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359515.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359515.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359515.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359515.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359515.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359515.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359515.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359515.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359515.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359515.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359515.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359515.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359515.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359515.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359515.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359515.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359515.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359515.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359515.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359515.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359515.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359515.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359515.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359515.fasta NC_007297 1249227 snp G A A:20 G:0 CDS - 1805/2649 602/882 missense_variant c.1805C>T p.Ser602Leu M5005_RS06375 valine--tRNA ligase ERR1359515.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359515.fasta NC_007297 1294671 del CT C C:19 CT:0 ERR1359515.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359515.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359515.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359515.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359515.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359515.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359515.fasta NC_007297 1477480 del TC T T:19 TC:0 CDS - 152/594 51/197 frameshift_variant c.152delG p.Gly51fs M5005_RS07535 MptD family putative ECF transporter S component ERR1359515.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359515.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359515.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359515.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359515.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359515.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359515.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359515.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359515.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359515.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359515.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359515.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359515.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR6835321.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR6835321.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR6835321.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha SRR6835321.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR6835321.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR6835321.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR6835321.fasta NC_007297 167489 snp C T T:20 C:0 SRR6835321.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR6835321.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR6835321.fasta NC_007297 293229 ins C CT CT:18 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR6835321.fasta NC_007297 316755 snp T C C:20 T:0 CDS + 133/702 45/233 synonymous_variant c.133T>C p.Leu45Leu M5005_RS01710 segregation/condensation protein A SRR6835321.fasta NC_007297 323312 snp G A A:20 G:0 CDS + 142/1335 48/444 missense_variant c.142G>A p.Gly48Ser M5005_RS01755 hemolysin family protein SRR6835321.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR6835321.fasta NC_007297 343279 del TA T T:19 TA:0 SRR6835321.fasta NC_007297 511831 snp A T T:20 A:0 SRR6835321.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR6835321.fasta NC_007297 528360 snp A T T:20 A:0 SRR6835321.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR6835321.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR6835321.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR6835321.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR6835321.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR6835321.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR6835321.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR6835321.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR6835321.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR6835321.fasta NC_007297 727443 del TC T T:20 TC:0 CDS + 1202/1239 401/412 frameshift_variant c.1202delC p.Pro401fs M5005_RS03680 hflX GTPase HflX SRR6835321.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR6835321.fasta NC_007297 757387 snp G T T:20 G:0 CDS + 260/1764 87/587 missense_variant c.260G>T p.Ser87Ile M5005_RS03825 lpdA dihydrolipoyl dehydrogenase SRR6835321.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR6835321.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR6835321.fasta NC_007297 782255 snp A G G:20 A:0 SRR6835321.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR6835321.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR6835321.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR6835321.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR6835321.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR6835321.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR6835321.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR6835321.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR6835321.fasta NC_007297 957886 snp T C C:20 T:0 SRR6835321.fasta NC_007297 959346 snp C T T:20 C:0 SRR6835321.fasta NC_007297 983438 snp G C C:20 G:0 SRR6835321.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR6835321.fasta NC_007297 1062837 snp C T T:20 C:0 CDS - 94/129 32/42 missense_variant c.94G>A p.Gly32Arg M5005_RS09505 DUF4044 domain-containing protein SRR6835321.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR6835321.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR6835321.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR6835321.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR6835321.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR6835321.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR6835321.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR6835321.fasta NC_007297 1238124 snp G A A:20 G:0 SRR6835321.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR6835321.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR6835321.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR6835321.fasta NC_007297 1360565 snp A G G:20 A:0 SRR6835321.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR6835321.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR6835321.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR6835321.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR6835321.fasta NC_007297 1452571 del ACCACCAAAGCCACCTCCGTCAAAACCACCAAAGCCGCCTGCTCCG A A:12 ACCACCAAAGCCACCTCCGTCAAAACCACCAAAGCCGCCTGCTCCG:0 CDS - 302/1158 86/385 disruptive_inframe_deletion c.258_302delCGGAGCAGGCGGCTTTGGTGGTTTTGACGGAGGTGGCTTTGGTGG p.Gly87_Gly101del M5005_RS07415 dnaJ molecular chaperone DnaJ SRR6835321.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR6835321.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR6835321.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR6835321.fasta NC_007297 1494220 snp G A A:20 G:0 CDS - 632/2520 211/839 missense_variant c.632C>T p.Ser211Leu M5005_RS07590 secA preprotein translocase subunit SecA SRR6835321.fasta NC_007297 1535209 snp A G G:20 A:0 SRR6835321.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR6835321.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR6835321.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR6835321.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR6835321.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR6835321.fasta NC_007297 1681641 del TTTTATCGCTAGACCAGTCATCTTCAGGCCAATCTTCAGGCCATTCTTC T T:10 TTTTATCGCTAGACCAGTCATCTTCAGGCCAATCTTCAGGCCATTCTTC:0 CDS - 306/942 87/313 conservative_inframe_deletion c.259_306delGAAGAATGGCCTGAAGATTGGCCTGAAGATGACTGGTCTAGCGATAAA p.Glu87_Lys102del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR6835321.fasta NC_007297 1681713 snp T G G:13 T:0 CDS - 235/942 79/313 missense_variant c.235A>C p.Lys79Gln M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR6835321.fasta NC_007297 1699626 snp G T T:20 G:0 CDS + 505/843 169/280 missense_variant c.505G>T p.Val169Phe M5005_RS08550 ropB quorum-sensing system transcriptional regulator RopB/Rgg1 SRR6835321.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR6835321.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR6835321.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR6835321.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR6835321.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR6835321.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein ERR1359336.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359336.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359336.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1359336.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359336.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359336.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359336.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359336.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359336.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359336.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359336.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359336.fasta NC_007297 343279 del TA T T:19 TA:0 ERR1359336.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359336.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359336.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:16 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359336.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359336.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359336.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359336.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359336.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359336.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359336.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359336.fasta NC_007297 686095 snp G A A:20 G:0 CDS + 607/945 203/314 missense_variant c.607G>A p.Val203Ile M5005_RS03475 mvaD diphosphomevalonate decarboxylase ERR1359336.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359336.fasta NC_007297 709281 snp A G G:20 A:0 CDS + 441/864 147/287 synonymous_variant c.441A>G p.Gly147Gly M5005_RS03590 transporter substrate-binding domain-containing protein ERR1359336.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359336.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359336.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359336.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359336.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359336.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359336.fasta NC_007297 791857 snp C T T:20 C:0 CDS + 306/506 102/167 synonymous_variant c.306C>T p.Phe102Phe M5005_RS03975 YkgJ family cysteine cluster protein ERR1359336.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359336.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359336.fasta NC_007297 908381 del TTAACAGGATAGC T T:17 TTAACAGGATAGC:0 CDS - 348/1224 113/407 conservative_inframe_deletion c.337_348delGCTATCCTGTTA p.Ala113_Leu116del M5005_RS04585 aminoacyltransferase ERR1359336.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359336.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359336.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359336.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359336.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359336.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359336.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359336.fasta NC_007297 1003874 snp C T T:20 C:0 CDS - 141/909 47/302 synonymous_variant c.141G>A p.Gly47Gly M5005_RS05075 minor capsid protein ERR1359336.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359336.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359336.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359336.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359336.fasta NC_007297 1146462 snp A G G:20 A:0 CDS + 340/801 114/266 missense_variant c.340A>G p.Thr114Ala M5005_RS05780 sda3 streptodornase Sda3 ERR1359336.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359336.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359336.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359336.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359336.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359336.fasta NC_007297 1238540 snp G A A:20 G:0 CDS - 345/624 115/207 synonymous_variant c.345C>T p.Asp115Asp M5005_RS06330 TlpA disulfide reductase family protein ERR1359336.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359336.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359336.fasta NC_007297 1294671 del CT C C:19 CT:0 ERR1359336.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359336.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359336.fasta NC_007297 1401601 snp T C C:20 T:0 CDS - 342/600 114/199 synonymous_variant c.342A>G p.Glu114Glu M5005_RS07090 phage major tail protein, TP901-1 family ERR1359336.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359336.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359336.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359336.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359336.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359336.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359336.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359336.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359336.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359336.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359336.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359336.fasta NC_007297 1683427 snp G A A:20 G:0 CDS - 164/1455 55/484 missense_variant c.164C>T p.Ala55Val M5005_RS08475 emm M protein ERR1359336.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359336.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359336.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359336.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359336.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359336.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR11659686.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR11659686.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR11659686.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha SRR11659686.fasta NC_007297 104240 snp C A A:20 C:0 CDS + 252/327 84/108 synonymous_variant c.252C>A p.Ile84Ile M5005_RS00655 comGC competence type IV pilus major pilin ComGC SRR11659686.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR11659686.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR11659686.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR11659686.fasta NC_007297 167489 snp C T T:20 C:0 SRR11659686.fasta NC_007297 230429 snp T C C:20 T:0 CDS + 29/1272 10/423 missense_variant c.29T>C p.Leu10Ser M5005_RS01295 DNA recombination protein RmuC SRR11659686.fasta NC_007297 241310 snp T G G:20 T:0 SRR11659686.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR11659686.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR11659686.fasta NC_007297 293229 ins C CT CT:18 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR11659686.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR11659686.fasta NC_007297 343279 del TA T T:19 TA:0 SRR11659686.fasta NC_007297 445679 snp G T T:20 G:0 CDS + 1096/1158 366/385 missense_variant c.1096G>T p.Asp366Tyr M5005_RS02365 nucleotide sugar dehydrogenase SRR11659686.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR11659686.fasta NC_007297 528360 snp A T T:20 A:0 SRR11659686.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR11659686.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR11659686.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR11659686.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR11659686.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR11659686.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR11659686.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR11659686.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR11659686.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR11659686.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR11659686.fasta NC_007297 744800 del GT G G:19 GT:0 SRR11659686.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR11659686.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR11659686.fasta NC_007297 782255 snp A G G:20 A:0 SRR11659686.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR11659686.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR11659686.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR11659686.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR11659686.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR11659686.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR11659686.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR11659686.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR11659686.fasta NC_007297 957886 snp T C C:20 T:0 SRR11659686.fasta NC_007297 959346 snp C T T:20 C:0 SRR11659686.fasta NC_007297 983438 snp G C C:20 G:0 SRR11659686.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR11659686.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR11659686.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR11659686.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR11659686.fasta NC_007297 1136321 snp G T T:20 G:0 SRR11659686.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR11659686.fasta NC_007297 1192056 snp G A A:20 G:0 CDS - 673/1410 225/469 stop_gained c.673C>T p.Gln225* M5005_RS06105 cryptochrome/photolyase family protein SRR11659686.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR11659686.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR11659686.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR11659686.fasta NC_007297 1238124 snp G A A:20 G:0 SRR11659686.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR11659686.fasta NC_007297 1243145 snp G A A:20 G:0 CDS - 1816/1896 606/631 missense_variant c.1816C>T p.Arg606Cys M5005_RS06360 cas8c type I-C CRISPR-associated protein Cas8c/Csd1 SRR11659686.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR11659686.fasta NC_007297 1275922 snp C A A:20 C:0 CDS + 534/1287 178/428 missense_variant c.534C>A p.His178Gln M5005_RS06490 glycoside hydrolase family 125 protein SRR11659686.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR11659686.fasta NC_007297 1350795 del GT G G:20 GT:0 SRR11659686.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR11659686.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR11659686.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR11659686.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR11659686.fasta NC_007297 1449384 snp G A A:20 G:0 CDS - 810/975 270/324 synonymous_variant c.810C>T p.Phe270Phe M5005_RS07400 beta-ketoacyl-ACP synthase III SRR11659686.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR11659686.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR11659686.fasta NC_007297 1474766 del CT C C:19 CT:0 SRR11659686.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR11659686.fasta NC_007297 1535209 snp A G G:20 A:0 SRR11659686.fasta NC_007297 1555322 snp G C C:20 G:0 CDS - 278/372 93/123 missense_variant c.278C>G p.Thr93Arg M5005_RS07890 MerR family transcriptional regulator SRR11659686.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR11659686.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR11659686.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR11659686.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR11659686.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR11659686.fasta NC_007297 1697940 snp G A A:20 G:0 CDS - 243/1197 81/398 synonymous_variant c.243C>T p.Tyr81Tyr M5005_RS08545 speB cysteine proteinase exotoxin SpeB SRR11659686.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR11659686.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR11659686.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR11659686.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR11659686.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR11659686.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169804.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169804.fasta NC_007297 64197 snp T C C:22 T:0 SRR21169804.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169804.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169804.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169804.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169804.fasta NC_007297 126007 snp C T T:20 C:0 CDS - 661/666 221/221 missense_variant c.661G>A p.Glu221Lys M5005_RS00790 hypothetical protein SRR21169804.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169804.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169804.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169804.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169804.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169804.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169804.fasta NC_007297 457133 complex ATTA TTTT TTTT:20 ATTA:0 CDS + 809/900 270/299 missense_variant c.809_812delATTAinsTTTT p.HisTyr270LeuPhe M5005_RS10035 histidyl-tRNA synthetase SRR21169804.fasta NC_007297 458987 del AC A A:19 AC:0 SRR21169804.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169804.fasta NC_007297 516326 del CA C C:20 CA:0 SRR21169804.fasta NC_007297 528231 snp A G G:20 A:0 SRR21169804.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169804.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:16 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169804.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169804.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169804.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169804.fasta NC_007297 595011 snp G A A:20 G:0 CDS + 2486/3216 829/1071 missense_variant c.2486G>A p.Ser829Asn M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169804.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169804.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169804.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169804.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169804.fasta NC_007297 681603 snp A G G:20 A:0 SRR21169804.fasta NC_007297 684809 snp A G G:20 A:0 CDS + 181/879 61/292 missense_variant c.181A>G p.Ile61Val M5005_RS03470 mvk mevalonate kinase SRR21169804.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169804.fasta NC_007297 700640 snp C T T:20 C:0 CDS + 357/441 119/146 synonymous_variant c.357C>T p.Pro119Pro M5005_RS03545 arsC arsenate reductase (glutaredoxin) SRR21169804.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169804.fasta NC_007297 741899 snp C A A:20 C:0 CDS + 375/1248 125/415 synonymous_variant c.375C>A p.Gly125Gly M5005_RS03760 tetratricopeptide repeat protein SRR21169804.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169804.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169804.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169804.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169804.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169804.fasta NC_007297 805928 snp G T T:20 G:0 CDS + 295/1347 99/448 missense_variant c.295G>T p.Val99Phe M5005_RS04050 sensor histidine kinase SRR21169804.fasta NC_007297 805943 snp A T T:20 A:0 CDS + 310/1347 104/448 missense_variant c.310A>T p.Asn104Tyr M5005_RS04050 sensor histidine kinase SRR21169804.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169804.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169804.fasta NC_007297 854429 snp C T T:20 C:0 CDS + 145/840 49/279 missense_variant c.145C>T p.Pro49Ser M5005_RS04325 prmC peptide chain release factor N(5)-glutamine methyltransferase SRR21169804.fasta NC_007297 899397 snp G C C:20 G:0 CDS - 834/1071 278/356 synonymous_variant c.834C>G p.Gly278Gly M5005_RS04550 xerS tyrosine recombinase XerS SRR21169804.fasta NC_007297 916225 snp C A A:20 C:0 SRR21169804.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169804.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169804.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169804.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169804.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169804.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169804.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169804.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169804.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169804.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169804.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169804.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169804.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169804.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169804.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169804.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169804.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169804.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169804.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169804.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169804.fasta NC_007297 1391003 snp C A A:20 C:0 CDS - 583/1908 195/635 missense_variant c.583G>T p.Ala195Ser M5005_RS07050 gp58-like family protein SRR21169804.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169804.fasta NC_007297 1404939 complex TTTA ATTT ATTT:19 TTTA:0 SRR21169804.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169804.fasta NC_007297 1408878 ins C CA CA:18 C:0 CDS - 780/1278 260/425 frameshift_variant c.780dupT p.Gly261fs M5005_RS07145 PBSX family phage terminase large subunit SRR21169804.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169804.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169804.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169804.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169804.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169804.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169804.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169804.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169804.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169804.fasta NC_007297 1681273 del TCCATCAAAG T T:15 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169804.fasta NC_007297 1681791 del GCCAGTCATCTCCAGA G G:15 GCCAGTCATCTCCAGA:1 CDS - 156/942 48/313 conservative_inframe_deletion c.142_156delTCTGGAGATGACTGG p.Ser48_Trp52del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169804.fasta NC_007297 1694316 snp C T T:20 C:0 CDS - 199/297 67/98 missense_variant c.199G>A p.Val67Ile M5005_RS08525 DUF4298 domain-containing protein SRR21169804.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169804.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169804.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169804.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169804.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein ERR1359427.fasta NC_007297 31771 snp A G G:20 A:0 CDS + 608/1197 203/398 missense_variant c.608A>G p.Gln203Arg M5005_RS00240 pcsB peptidoglycan hydrolase PcsB ERR1359427.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359427.fasta NC_007297 109614 snp A T T:20 A:0 CDS - 852/1068 284/355 missense_variant c.852T>A p.Asn284Lys M5005_RS00700 pepA glutamyl aminopeptidase ERR1359427.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359427.fasta NC_007297 162827 snp C T T:20 C:0 CDS + 348/486 116/161 synonymous_variant c.348C>T p.Ile116Ile M5005_RS00960 PTS sugar transporter subunit IIA ERR1359427.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359427.fasta NC_007297 227151 snp C T T:20 C:0 CDS + 218/873 73/290 missense_variant c.218C>T p.Ala73Val M5005_RS01275 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA ERR1359427.fasta NC_007297 245908 snp G A A:20 G:0 CDS + 1693/1899 565/632 missense_variant c.1693G>A p.Ala565Thr M5005_RS01345 DUF2207 domain-containing protein ERR1359427.fasta NC_007297 262467 snp C T T:20 C:0 CDS + 447/1071 149/356 synonymous_variant c.447C>T p.Ala149Ala M5005_RS01415 ABC transporter ATP-binding protein ERR1359427.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359427.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359427.fasta NC_007297 337763 snp C T T:20 C:0 CDS + 77/876 26/291 missense_variant c.77C>T p.Ala26Val M5005_RS01825 DNA polymerase III subunit delta' ERR1359427.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359427.fasta NC_007297 411197 snp A C C:20 A:0 CDS - 585/684 195/227 synonymous_variant c.585T>G p.Ser195Ser M5005_RS02220 DUF969 domain-containing protein ERR1359427.fasta NC_007297 472015 snp G T T:20 G:0 CDS + 1572/2133 524/710 synonymous_variant c.1572G>T p.Pro524Pro M5005_RS02510 Tex family protein ERR1359427.fasta NC_007297 533026 del GA G G:18 GA:0 ERR1359427.fasta NC_007297 537603 snp C T T:20 C:0 CDS - 540/942 180/313 synonymous_variant c.540G>A p.Glu180Glu M5005_RS02820 DHH family phosphoesterase ERR1359427.fasta NC_007297 541743 snp C T T:20 C:0 CDS - 54/354 18/117 synonymous_variant c.54G>A p.Ala18Ala M5005_RS09745 tyrosine-type recombinase/integrase ERR1359427.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359427.fasta NC_007297 548664 snp G T T:20 G:0 CDS + 1069/1308 357/435 missense_variant c.1069G>T p.Ala357Ser M5005_RS02870 eno surface-displayed alpha-enolase ERR1359427.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359427.fasta NC_007297 577230 snp C T T:20 C:0 CDS + 83/537 28/178 missense_variant c.83C>T p.Ala28Val M5005_RS02975 F0F1 ATP synthase subunit delta ERR1359427.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359427.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359427.fasta NC_007297 669771 snp G A A:20 G:0 CDS + 386/600 129/199 missense_variant c.386G>A p.Arg129His M5005_RS03390 glycoside hydrolase family 73 protein ERR1359427.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359427.fasta NC_007297 743367 snp A C C:20 A:0 CDS - 1117/1653 373/550 missense_variant c.1117T>G p.Ser373Ala M5005_RS03765 fbp54 Rqc2 family fibronectin-binding protein Fbp54 ERR1359427.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359427.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359427.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359427.fasta NC_007297 782340 del GAACAA G G:17 GAACAA:0 ERR1359427.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359427.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359427.fasta NC_007297 889322 snp G C C:20 G:0 CDS - 199/1404 67/467 missense_variant c.199C>G p.Leu67Val M5005_RS04490 CitMHS family transporter ERR1359427.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359427.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359427.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359427.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359427.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359427.fasta NC_007297 1060007 snp G A A:20 G:0 CDS - 274/1401 92/466 missense_variant c.274C>T p.Pro92Ser M5005_RS05375 glycoside hydrolase family 1 protein ERR1359427.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359427.fasta NC_007297 1088099 snp T C C:20 T:0 CDS - 818/1671 273/556 missense_variant c.818A>G p.Asp273Gly M5005_RS05500 dnaX DNA polymerase III subunit gamma/tau ERR1359427.fasta NC_007297 1095566 snp T C C:20 T:0 ERR1359427.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359427.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359427.fasta NC_007297 1177499 snp A G G:20 A:0 CDS + 209/267 70/88 missense_variant c.209A>G p.Lys70Arg M5005_RS06030 DUF4177 domain-containing protein ERR1359427.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359427.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359427.fasta NC_007297 1228574 snp T G G:20 T:0 CDS - 561/1014 187/337 synonymous_variant c.561A>C p.Ser187Ser M5005_RS06280 argF ornithine carbamoyltransferase ERR1359427.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359427.fasta NC_007297 1244164 snp T C C:20 T:0 CDS - 797/1896 266/631 missense_variant c.797A>G p.Tyr266Cys M5005_RS06360 cas8c type I-C CRISPR-associated protein Cas8c/Csd1 ERR1359427.fasta NC_007297 1244434 snp G T T:20 G:0 CDS - 527/1896 176/631 stop_gained c.527C>A p.Ser176* M5005_RS06360 cas8c type I-C CRISPR-associated protein Cas8c/Csd1 ERR1359427.fasta NC_007297 1251911 snp A C C:20 A:0 ERR1359427.fasta NC_007297 1294743 snp G T T:20 G:0 CDS + 31/633 11/210 missense_variant c.31G>T p.Gly11Cys M5005_RS06590 YigZ family protein ERR1359427.fasta NC_007297 1311000 del CT C C:19 CT:0 CDS - 838/897 280/298 frameshift_variant c.838delA p.Ser280fs M5005_RS06665 LysR family transcriptional regulator ERR1359427.fasta NC_007297 1339838 del CA C C:19 CA:0 CDS - 121/141 41/46 frameshift_variant c.121delT p.Trp41fs M5005_RS09840 hypothetical protein ERR1359427.fasta NC_007297 1350795 del GT G G:19 GT:0 ERR1359427.fasta NC_007297 1415226 snp G A A:20 G:0 CDS - 1215/2385 405/794 synonymous_variant c.1215C>T p.Arg405Arg M5005_RS07185 phage/plasmid primase, P4 family ERR1359427.fasta NC_007297 1417579 snp A G G:20 A:0 CDS - 789/1923 263/640 synonymous_variant c.789T>C p.Asp263Asp M5005_RS07190 DNA polymerase ERR1359427.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359427.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359427.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359427.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359427.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359427.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359427.fasta NC_007297 1681230 snp G A A:20 G:0 CDS - 718/942 240/313 missense_variant c.718C>T p.Pro240Ser M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359427.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359427.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:10 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359427.fasta NC_007297 1695084 del AT A A:19 AT:0 ERR1359427.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359427.fasta NC_007297 1739334 snp G T T:20 G:0 CDS + 701/1344 234/447 missense_variant c.701G>T p.Arg234Leu M5005_RS08735 APC family permease ERR1359427.fasta NC_007297 1778188 snp G A A:20 G:0 CDS + 1429/1692 477/563 missense_variant c.1429G>A p.Ala477Thr M5005_RS08890 argS arginine--tRNA ligase ERR1359427.fasta NC_007297 1792446 snp T C C:20 T:0 CDS + 297/327 99/108 synonymous_variant c.297T>C p.Ile99Ile M5005_RS08975 PadR family transcriptional regulator ERR1359427.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359427.fasta NC_007297 1823275 snp C A A:20 C:0 CDS + 208/1107 70/368 missense_variant c.208C>A p.Leu70Ile M5005_RS09120 recF DNA replication/repair protein RecF ERR1359427.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169981.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169981.fasta NC_007297 36169 snp C A A:20 C:0 CDS + 158/705 53/234 stop_gained c.158C>A p.Ser53* M5005_RS00265 purC phosphoribosylaminoimidazolesuccinocarboxamide synthase SRR21169981.fasta NC_007297 53185 snp G T T:20 G:0 CDS + 1286/1293 429/430 missense_variant c.1286G>T p.Gly429Val M5005_RS00320 purB adenylosuccinate lyase SRR21169981.fasta NC_007297 53201 snp A C C:20 A:0 SRR21169981.fasta NC_007297 53233 snp A T T:20 A:0 SRR21169981.fasta NC_007297 76208 del AAAG A A:20 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169981.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169981.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169981.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169981.fasta NC_007297 116281 snp A G G:20 A:0 CDS - 836/1494 279/497 missense_variant c.836T>C p.Ile279Thr M5005_RS00740 rofA transcriptional regulator RofA SRR21169981.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169981.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169981.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169981.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169981.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169981.fasta NC_007297 343279 del TA T T:20 TA:0 SRR21169981.fasta NC_007297 347948 snp A C C:20 A:0 CDS + 3204/4944 1068/1647 synonymous_variant c.3204A>C p.Ile1068Ile M5005_RS01880 scpC CXC chemokine-degrading serine protease SpyCEP SRR21169981.fasta NC_007297 375809 snp G T T:20 G:0 SRR21169981.fasta NC_007297 456733 snp G T T:20 G:0 CDS + 409/900 137/299 missense_variant c.409G>T p.Val137Leu M5005_RS10035 histidyl-tRNA synthetase SRR21169981.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169981.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169981.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:16 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169981.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169981.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169981.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169981.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169981.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169981.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169981.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169981.fasta NC_007297 686815 snp A G G:20 A:0 CDS + 390/1008 130/335 synonymous_variant c.390A>G p.Pro130Pro M5005_RS03480 phosphomevalonate kinase SRR21169981.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169981.fasta NC_007297 695440 snp G A A:20 G:0 CDS + 426/744 142/247 synonymous_variant c.426G>A p.Glu142Glu M5005_RS03525 hypothetical protein SRR21169981.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169981.fasta NC_007297 739706 snp G A A:20 G:0 SRR21169981.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169981.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169981.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169981.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169981.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169981.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169981.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169981.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169981.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169981.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169981.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169981.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169981.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169981.fasta NC_007297 960815 ins G GT GT:19 G:0 CDS - 154/189 52/62 frameshift_variant c.154dupA p.Thr52fs M5005_RS04845 DUF2273 domain-containing protein SRR21169981.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169981.fasta NC_007297 994808 snp G A A:20 G:0 CDS - 1446/1485 482/494 synonymous_variant c.1446C>T p.Asn482Asn M5005_RS05010 distal tail protein Dit SRR21169981.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169981.fasta NC_007297 1047384 snp T A A:13 T:0 SRR21169981.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169981.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169981.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169981.fasta NC_007297 1126056 snp T A A:20 T:0 SRR21169981.fasta NC_007297 1146961 snp A C C:20 A:0 SRR21169981.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169981.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169981.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169981.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169981.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169981.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169981.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169981.fasta NC_007297 1273568 snp C A A:20 C:0 CDS - 598/1695 200/564 missense_variant c.598G>T p.Gly200Trp M5005_RS06480 beta-N-acetylglucosaminidase SRR21169981.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169981.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169981.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169981.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169981.fasta NC_007297 1416434 snp G A A:20 G:0 CDS - 7/2385 3/794 stop_gained c.7C>T p.Gln3* M5005_RS07185 phage/plasmid primase, P4 family SRR21169981.fasta NC_007297 1445049 snp G A A:20 G:0 CDS - 1011/1233 337/410 synonymous_variant c.1011C>T p.His337His M5005_RS07375 fabF beta-ketoacyl-ACP synthase II SRR21169981.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169981.fasta NC_007297 1451629 del TA T T:19 TA:0 SRR21169981.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169981.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169981.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169981.fasta NC_007297 1500387 snp G A A:20 G:0 CDS - 1098/2988 366/995 synonymous_variant c.1098C>T p.Asp366Asp M5005_RS07620 endo-beta-N-acetylglucosaminidase EndoS SRR21169981.fasta NC_007297 1514097 snp G T T:20 G:0 CDS + 383/657 128/218 missense_variant c.383G>T p.Gly128Val M5005_RS07675 DUF1129 domain-containing protein SRR21169981.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169981.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169981.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169981.fasta NC_007297 1630160 del CT C C:20 CT:0 SRR21169981.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169981.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169981.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169981.fasta NC_007297 1718925 snp G T T:20 G:0 CDS + 663/1497 221/498 missense_variant c.663G>T p.Lys221Asn M5005_RS08645 C69 family dipeptidase SRR21169981.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169981.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169981.fasta NC_007297 1790227 snp A T T:20 A:0 SRR21169981.fasta NC_007297 1790236 snp T A A:20 T:0 SRR21169981.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169981.fasta NC_007297 1821106 snp G T T:20 G:0 CDS + 1066/1209 356/402 stop_gained c.1066G>T p.Glu356* M5005_RS09105 hasB UDP-glucose 6-dehydrogenase HasB SRR21169981.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169981.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein ERR1515724.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1515724.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1515724.fasta NC_007297 146008 snp A G G:20 A:0 CDS - 2/879 1/292 start_lost c.2T>C p.Met1? M5005_RS00890 hypothetical protein ERR1515724.fasta NC_007297 149124 snp G A A:20 G:0 ERR1515724.fasta NC_007297 167489 snp C T T:20 C:0 ERR1515724.fasta NC_007297 288831 snp A G G:20 A:0 CDS - 150/1377 50/458 synonymous_variant c.150T>C p.Phe50Phe M5005_RS01555 ktrB potassium uptake transporter channel subunit KtrB ERR1515724.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1515724.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1515724.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1515724.fasta NC_007297 413350 snp G T T:20 G:0 CDS - 91/378 31/125 missense_variant c.91C>A p.Arg31Ser M5005_RS02230 lactoylglutathione lyase ERR1515724.fasta NC_007297 445837 del GA G G:19 GA:0 CDS + 20/1209 7/402 frameshift_variant c.20delA p.Asn7fs M5005_RS02370 MFS transporter ERR1515724.fasta NC_007297 503870 snp C T T:20 C:0 CDS + 1704/2682 568/893 synonymous_variant c.1704C>T p.Gly568Gly M5005_RS02670 cation-translocating P-type ATPase ERR1515724.fasta NC_007297 511352 snp C A A:20 C:0 CDS - 403/438 135/145 missense_variant c.403G>T p.Asp135Tyr M5005_RS02705 PTS sugar transporter subunit IIA ERR1515724.fasta NC_007297 530171 snp A C C:20 A:0 CDS + 645/978 215/325 synonymous_variant c.645A>C p.Ala215Ala M5005_RS02785 YvcK family protein ERR1515724.fasta NC_007297 530287 snp T C C:20 T:0 CDS + 761/978 254/325 missense_variant c.761T>C p.Val254Ala M5005_RS02785 YvcK family protein ERR1515724.fasta NC_007297 535998 snp G A A:20 G:0 CDS + 469/1200 157/399 missense_variant c.469G>A p.Ala157Thr M5005_RS02810 SIS domain-containing protein ERR1515724.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1515724.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1515724.fasta NC_007297 574816 snp C G G:20 C:0 CDS + 544/1023 182/340 missense_variant c.544C>G p.Pro182Ala M5005_RS02955 diacylglycerol kinase family lipid kinase ERR1515724.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1515724.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1515724.fasta NC_007297 650271 snp G A A:20 G:0 CDS + 64/711 22/236 missense_variant c.64G>A p.Asp22Asn M5005_RS03305 ABC transporter ATP-binding protein ERR1515724.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1515724.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1515724.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1515724.fasta NC_007297 782255 snp A G G:18 A:0 ERR1515724.fasta NC_007297 782340 ins G GAACAAAACAAAACAA GAACAAAACAAAACAA:14 G:0 ERR1515724.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1515724.fasta NC_007297 794049 snp C G G:20 C:0 CDS + 450/1398 150/465 missense_variant c.450C>G p.Asn150Lys M5005_RS03990 NAD-dependent succinate-semialdehyde dehydrogenase ERR1515724.fasta NC_007297 850019 snp G A A:20 G:0 CDS + 79/1284 27/427 missense_variant c.79G>A p.Ala27Thr M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1515724.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1515724.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1515724.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1515724.fasta NC_007297 957886 snp T C C:20 T:0 ERR1515724.fasta NC_007297 959346 snp C T T:20 C:0 ERR1515724.fasta NC_007297 964285 snp C G G:20 C:0 CDS - 274/2319 92/772 missense_variant c.274G>C p.Val92Leu M5005_RS04860 pcrA DNA helicase PcrA ERR1515724.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1515724.fasta NC_007297 1064592 snp C T T:10 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1515724.fasta NC_007297 1084780 snp T A A:20 T:0 CDS - 1049/2379 350/792 missense_variant c.1049A>T p.Glu350Val M5005_RS05490 leucine-rich repeat domain-containing protein ERR1515724.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1515724.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1515724.fasta NC_007297 1161690 snp A T T:16 A:0 CDS - 17/180 6/59 stop_gained c.17T>A p.Leu6* M5005_RS05895 hypothetical protein ERR1515724.fasta NC_007297 1161707 complex AT GC GC:17 AT:0 ERR1515724.fasta NC_007297 1161784 snp C T T:20 C:0 CDS - 197/225 66/74 missense_variant c.197G>A p.Gly66Asp M5005_RS05900 hypothetical protein ERR1515724.fasta NC_007297 1163104 snp T C C:20 T:0 CDS - 376/1494 126/497 missense_variant c.376A>G p.Arg126Gly M5005_RS05905 hypothetical protein ERR1515724.fasta NC_007297 1163219 snp C T T:20 C:0 CDS - 261/1494 87/497 synonymous_variant c.261G>A p.Gly87Gly M5005_RS05905 hypothetical protein ERR1515724.fasta NC_007297 1165168 snp A G G:14 A:0 ERR1515724.fasta NC_007297 1165178 snp T G G:13 T:0 ERR1515724.fasta NC_007297 1165183 complex AG CC CC:12 AG:0 ERR1515724.fasta NC_007297 1165194 complex ATTTC GTTTA GTTTA:11 ATTTC:0 ERR1515724.fasta NC_007297 1165205 complex AAGAGC GACCAG GACCAG:10 AAGAGC:0 ERR1515724.fasta NC_007297 1165217 snp T C C:11 T:0 ERR1515724.fasta NC_007297 1165228 del AT A A:10 AT:0 ERR1515724.fasta NC_007297 1165236 complex CTAAAA ACAAAT ACAAAT:10 CTAAAA:0 ERR1515724.fasta NC_007297 1165251 snp A T T:11 A:0 CDS - 336/345 112/114 missense_variant c.336T>A p.Phe112Leu M5005_RS05920 HNH endonuclease signature motif containing protein ERR1515724.fasta NC_007297 1165256 snp C T T:12 C:0 CDS - 331/345 111/114 missense_variant c.331G>A p.Ala111Thr M5005_RS05920 HNH endonuclease signature motif containing protein ERR1515724.fasta NC_007297 1165830 snp C T T:20 C:0 CDS - 285/420 95/139 synonymous_variant c.285G>A p.Leu95Leu M5005_RS05925 DUF1492 domain-containing protein ERR1515724.fasta NC_007297 1165836 snp C T T:20 C:0 CDS - 279/420 93/139 synonymous_variant c.279G>A p.Thr93Thr M5005_RS05925 DUF1492 domain-containing protein ERR1515724.fasta NC_007297 1165875 snp T C C:20 T:0 CDS - 240/420 80/139 synonymous_variant c.240A>G p.Gln80Gln M5005_RS05925 DUF1492 domain-containing protein ERR1515724.fasta NC_007297 1165905 snp A G G:20 A:0 CDS - 210/420 70/139 synonymous_variant c.210T>C p.Ala70Ala M5005_RS05925 DUF1492 domain-containing protein ERR1515724.fasta NC_007297 1165917 complex TTCA CTCG CTCG:20 TTCA:0 CDS - 198/420 65/139 synonymous_variant c.195_198delTGAAinsCGAG p.67 M5005_RS05925 DUF1492 domain-containing protein ERR1515724.fasta NC_007297 1165928 snp T C C:20 T:0 CDS - 187/420 63/139 missense_variant c.187A>G p.Lys63Glu M5005_RS05925 DUF1492 domain-containing protein ERR1515724.fasta NC_007297 1165986 snp C A A:16 C:0 CDS - 129/420 43/139 synonymous_variant c.129G>T p.Val43Val M5005_RS05925 DUF1492 domain-containing protein ERR1515724.fasta NC_007297 1165995 snp A G G:16 A:0 CDS - 120/420 40/139 synonymous_variant c.120T>C p.Ser40Ser M5005_RS05925 DUF1492 domain-containing protein ERR1515724.fasta NC_007297 1166022 complex CGAAGC TGAGGT TGAGGT:12 CGAAGC:0 CDS - 93/420 30/139 missense_variant c.88_93delGCTTCGinsACCTCA p.Ala30Thr M5005_RS05925 DUF1492 domain-containing protein ERR1515724.fasta NC_007297 1166037 complex ATCTC TTCCT TTCCT:12 ATCTC:0 CDS - 78/420 25/139 missense_variant c.74_78delGAGATinsAGGAA p.ArgAsp25GlnGlu M5005_RS05925 DUF1492 domain-containing protein ERR1515724.fasta NC_007297 1166049 snp G A A:11 G:0 CDS - 66/420 22/139 synonymous_variant c.66C>T p.Ile22Ile M5005_RS05925 DUF1492 domain-containing protein ERR1515724.fasta NC_007297 1168748 complex CGTG TGTA TGTA:10 CGTG:0 CDS - 627/798 208/265 synonymous_variant c.624_627delCACGinsTACA p.210 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1168757 snp C T T:11 C:0 CDS - 618/798 206/265 synonymous_variant c.618G>A p.Pro206Pro M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1168766 complex TTTAGTCACTGCA CTTGGTTACCGCG CTTGGTTACCGCG:11 TTTAGTCACTGCA:0 CDS - 609/798 199/265 synonymous_variant c.597_609delTGCAGTGACTAAAinsCGCGGTAACCAAG p.204 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1168792 complex TA CG CG:13 TA:0 CDS - 583/798 194/265 missense_variant c.582_583delTAinsCG p.Lys195Glu M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1168799 snp C T T:13 C:0 CDS - 576/798 192/265 synonymous_variant c.576G>A p.Lys192Lys M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1168805 snp G A A:14 G:0 CDS - 570/798 190/265 synonymous_variant c.570C>T p.Tyr190Tyr M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1168819 snp G A A:15 G:0 CDS - 556/798 186/265 synonymous_variant c.556C>T p.Leu186Leu M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1168847 snp A G G:15 A:0 CDS - 528/798 176/265 synonymous_variant c.528T>C p.Ile176Ile M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1168856 snp A G G:15 A:0 CDS - 519/798 173/265 synonymous_variant c.519T>C p.Tyr173Tyr M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1168862 snp T C C:14 T:0 CDS - 513/798 171/265 synonymous_variant c.513A>G p.Glu171Glu M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1168886 complex TCTAT GCCAC GCCAC:12 TCTAT:0 CDS - 489/798 162/265 missense_variant c.485_489delATAGAinsGTGGC p.AsnArg162SerGly M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1168895 complex GATT AATC AATC:12 GATT:0 CDS - 480/798 159/265 synonymous_variant c.477_480delAATCinsGATT p.161 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1168960 snp A G G:16 A:0 CDS - 415/798 139/265 synonymous_variant c.415T>C p.Leu139Leu M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1168987 snp C T T:16 C:0 CDS - 388/798 130/265 missense_variant c.388G>A p.Val130Ile M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1169018 snp T C C:17 T:0 CDS - 357/798 119/265 synonymous_variant c.357A>G p.Lys119Lys M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1169033 complex TATG GATA GATA:16 TATG:0 CDS - 342/798 113/265 synonymous_variant c.339_342delCATAinsTATC p.115 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1169042 snp G A A:17 G:0 CDS - 333/798 111/265 synonymous_variant c.333C>T p.Phe111Phe M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1169051 complex GTCAT ATCAC ATCAC:16 GTCAT:0 CDS - 324/798 107/265 missense_variant c.320_324delATGACinsGTGAT p.Asn107Ser M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1169063 complex TGCT AGCG AGCG:16 TGCT:0 CDS - 312/798 103/265 missense_variant c.309_312delAGCAinsCGCT p.Glu103Asp M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1169081 complex TGCG AGCA AGCA:14 TGCG:0 CDS - 294/798 97/265 synonymous_variant c.291_294delCGCAinsTGCT p.99 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1169090 complex ATAGTCT GTAATCC GTAATCC:14 ATAGTCT:0 CDS - 285/798 93/265 synonymous_variant c.279_285delAGACTATinsGGATTAC p.96 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1169102 complex GAGCTGA TAATTGG TAATTGG:13 GAGCTGA:0 CDS - 273/798 89/265 synonymous_variant c.267_273delTCAGCTCinsCCAATTA p.92 M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1169114 snp A T T:15 A:0 CDS - 261/798 87/265 synonymous_variant c.261T>A p.Thr87Thr M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1169119 snp T C C:15 T:0 CDS - 256/798 86/265 missense_variant c.256A>G p.Thr86Ala M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1169125 snp T G G:15 T:0 CDS - 250/798 84/265 synonymous_variant c.250A>C p.Arg84Arg M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1169145 snp T C C:15 T:0 CDS - 230/798 77/265 missense_variant c.230A>G p.Asp77Gly M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1169175 complex GC TT TT:12 GC:0 CDS - 200/798 67/265 missense_variant c.199_200delGCinsAA p.Ala67Lys M5005_RS05950 PD-(D/E)XK nuclease-like domain-containing protein ERR1515724.fasta NC_007297 1169854 snp T G G:20 T:0 CDS - 447/930 149/309 missense_variant c.447A>C p.Leu149Phe M5005_RS05955 recombinase RecT ERR1515724.fasta NC_007297 1170004 snp A C C:20 A:0 CDS - 297/930 99/309 synonymous_variant c.297T>G p.Ala99Ala M5005_RS05955 recombinase RecT ERR1515724.fasta NC_007297 1170141 snp C T T:20 C:0 CDS - 160/930 54/309 missense_variant c.160G>A p.Glu54Lys M5005_RS05955 recombinase RecT ERR1515724.fasta NC_007297 1170196 snp T C C:19 T:0 CDS - 105/930 35/309 synonymous_variant c.105A>G p.Ala35Ala M5005_RS05955 recombinase RecT ERR1515724.fasta NC_007297 1170246 snp T C C:19 T:0 CDS - 55/930 19/309 missense_variant c.55A>G p.Ile19Val M5005_RS05955 recombinase RecT ERR1515724.fasta NC_007297 1170378 complex AACATCC CACTGAT CACTGAT:17 AACATCC:0 CDS - 255/330 83/109 missense_variant c.249_255delGGATGTTinsATCAGTG p.Asp84Ser M5005_RS05960 hypothetical protein ERR1515724.fasta NC_007297 1170463 ins A AT AT:17 A:0 CDS - 169/330 57/109 frameshift_variant c.169dupA p.Ile57fs M5005_RS05960 hypothetical protein ERR1515724.fasta NC_007297 1170646 complex CC TT TT:19 CC:0 ERR1515724.fasta NC_007297 1170805 snp C A A:20 C:0 CDS - 90/207 30/68 missense_variant c.90G>T p.Glu30Asp M5005_RS05965 hypothetical protein ERR1515724.fasta NC_007297 1170899 snp T C C:20 T:0 ERR1515724.fasta NC_007297 1170921 snp G A A:20 G:0 CDS - 123/141 41/46 synonymous_variant c.123C>T p.Arg41Arg M5005_RS09935 hypothetical protein ERR1515724.fasta NC_007297 1170944 snp T C C:19 T:0 CDS - 100/141 34/46 missense_variant c.100A>G p.Met34Val M5005_RS09935 hypothetical protein ERR1515724.fasta NC_007297 1170949 complex TGTGA CGTGC CGTGC:19 TGTGA:0 CDS - 95/141 31/46 missense_variant c.91_95delTCACAinsGCACG p.SerGln31AlaArg M5005_RS09935 hypothetical protein ERR1515724.fasta NC_007297 1170963 complex AAGCCCG TAGTCCA TAGTCCA:18 AAGCCCG:0 CDS - 81/141 25/46 synonymous_variant c.75_81delCGGGCTTinsTGGACTA p.28 M5005_RS09935 hypothetical protein ERR1515724.fasta NC_007297 1170999 snp G A A:20 G:0 CDS - 45/141 15/46 synonymous_variant c.45C>T p.Ser15Ser M5005_RS09935 hypothetical protein ERR1515724.fasta NC_007297 1171007 snp T G G:20 T:0 CDS - 37/141 13/46 synonymous_variant c.37A>C p.Arg13Arg M5005_RS09935 hypothetical protein ERR1515724.fasta NC_007297 1171032 snp C T T:20 C:0 CDS - 12/141 4/46 synonymous_variant c.12G>A p.Gln4Gln M5005_RS09935 hypothetical protein ERR1515724.fasta NC_007297 1171047 snp A G G:20 A:0 CDS - 227/234 76/77 missense_variant c.227T>C p.Val76Ala M5005_RS05970 hypothetical protein ERR1515724.fasta NC_007297 1171076 complex TAAT CAAC CAAC:20 TAAT:0 CDS - 198/234 65/77 synonymous_variant c.195_198delATTAinsGTTG p.67 M5005_RS05970 hypothetical protein ERR1515724.fasta NC_007297 1171106 snp G A A:20 G:0 CDS - 168/234 56/77 synonymous_variant c.168C>T p.Thr56Thr M5005_RS05970 hypothetical protein ERR1515724.fasta NC_007297 1172335 snp G A A:10 G:0 CDS - 291/312 97/103 synonymous_variant c.291C>T p.Phe97Phe M5005_RS05990 hypothetical protein ERR1515724.fasta NC_007297 1172361 snp A G G:12 A:0 CDS - 265/312 89/103 missense_variant c.265T>C p.Ser89Pro M5005_RS05990 hypothetical protein ERR1515724.fasta NC_007297 1172383 snp A G G:14 A:0 CDS - 243/312 81/103 synonymous_variant c.243T>C p.Tyr81Tyr M5005_RS05990 hypothetical protein ERR1515724.fasta NC_007297 1172427 snp C T T:17 C:0 CDS - 199/312 67/103 missense_variant c.199G>A p.Glu67Lys M5005_RS05990 hypothetical protein ERR1515724.fasta NC_007297 1177947 snp G A A:20 G:0 CDS + 267/1143 89/380 synonymous_variant c.267G>A p.Arg89Arg M5005_RS06035 tyrosine-type recombinase/integrase ERR1515724.fasta NC_007297 1177953 snp C T T:20 C:0 CDS + 273/1143 91/380 synonymous_variant c.273C>T p.Asn91Asn M5005_RS06035 tyrosine-type recombinase/integrase ERR1515724.fasta NC_007297 1178265 snp T A A:20 T:0 CDS + 585/1143 195/380 synonymous_variant c.585T>A p.Arg195Arg M5005_RS06035 tyrosine-type recombinase/integrase ERR1515724.fasta NC_007297 1178769 snp G T T:19 G:0 CDS + 1089/1143 363/380 synonymous_variant c.1089G>T p.Thr363Thr M5005_RS06035 tyrosine-type recombinase/integrase ERR1515724.fasta NC_007297 1178842 snp A C C:19 A:0 ERR1515724.fasta NC_007297 1178878 complex GG AC AC:18 GG:0 ERR1515724.fasta NC_007297 1178887 del GA G G:19 GA:0 ERR1515724.fasta NC_007297 1178905 snp C A A:20 C:0 ERR1515724.fasta NC_007297 1200286 snp G A A:20 G:0 CDS - 951/2802 317/933 synonymous_variant c.951C>T p.Thr317Thr M5005_RS06140 ileS isoleucine--tRNA ligase ERR1515724.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1515724.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1515724.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1515724.fasta NC_007297 1248373 snp G A A:20 G:0 ERR1515724.fasta NC_007297 1385676 snp C T T:20 C:0 ERR1515724.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1515724.fasta NC_007297 1400776 snp C A A:20 C:0 ERR1515724.fasta NC_007297 1400979 snp G A A:20 G:0 CDS - 311/456 104/151 missense_variant c.311C>T p.Ser104Phe M5005_RS07085 tail assembly chaperone ERR1515724.fasta NC_007297 1434475 snp C T T:20 C:0 ERR1515724.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1515724.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1515724.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1515724.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1515724.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1515724.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1515724.fasta NC_007297 1681273 del TCCATCAAAG T T:16 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1515724.fasta NC_007297 1681766 del CCATCTCCAGACCAGTCATCTTCAGGCCAGT C C:14 CCATCTCCAGACCAGTCATCTTCAGGCCAGT:0 CDS - 181/942 51/313 disruptive_inframe_deletion c.152_181delACTGGCCTGAAGATGACTGGTCTGGAGATG p.Asp51_Asp60del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1515724.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1515724.fasta NC_007297 1754171 snp T C C:20 T:0 ERR1515724.fasta NC_007297 1768820 ins C CT CT:20 C:0 CDS - 371/561 124/186 frameshift_variant c.371dupA p.Pro125fs M5005_RS08855 DNA-3-methyladenine glycosylase I ERR1515724.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1515724.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359385.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359385.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359385.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1359385.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359385.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359385.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359385.fasta NC_007297 165891 snp A T T:20 A:0 CDS + 275/1647 92/548 missense_variant c.275A>T p.Glu92Val M5005_RS00980 BglG family transcription antiterminator ERR1359385.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359385.fasta NC_007297 171421 snp A T T:20 A:0 CDS + 1115/1728 372/575 missense_variant c.1115A>T p.Asp372Val M5005_RS00995 ABC transporter permease/substrate binding protein ERR1359385.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359385.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359385.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359385.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359385.fasta NC_007297 343279 del TA T T:18 TA:0 ERR1359385.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359385.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359385.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359385.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359385.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359385.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359385.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359385.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359385.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359385.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359385.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359385.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359385.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359385.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359385.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359385.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359385.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359385.fasta NC_007297 812565 snp C A A:20 C:0 CDS + 69/1236 23/411 synonymous_variant c.69C>A p.Leu23Leu M5005_RS04110 pbp3 D-alanyl-D-alanine carboxypeptidase PBP3 ERR1359385.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359385.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359385.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359385.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359385.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359385.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359385.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359385.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359385.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359385.fasta NC_007297 992831 snp C T T:20 C:0 CDS - 1938/3441 646/1146 missense_variant c.1938G>A p.Met646Ile M5005_RS05005 glucosaminidase domain-containing protein ERR1359385.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359385.fasta NC_007297 1064592 snp C T T:10 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359385.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359385.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359385.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359385.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359385.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359385.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359385.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359385.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359385.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359385.fasta NC_007297 1294096 snp T C C:20 T:0 CDS - 562/1326 188/441 missense_variant c.562A>G p.Thr188Ala M5005_RS06585 DEAD/DEAH box helicase ERR1359385.fasta NC_007297 1294671 del CT C C:19 CT:0 ERR1359385.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359385.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359385.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359385.fasta NC_007297 1419026 snp G T T:20 G:0 CDS - 351/399 117/132 missense_variant c.351C>A p.Asn117Lys M5005_RS07200 hypothetical protein ERR1359385.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359385.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359385.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359385.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359385.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359385.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359385.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359385.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359385.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359385.fasta NC_007297 1681273 del TCCATCAAAG T T:12 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359385.fasta NC_007297 1682637 snp T G G:20 T:0 CDS - 954/1455 318/484 missense_variant c.954A>C p.Glu318Asp M5005_RS08475 emm M protein ERR1359385.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359385.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359385.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359385.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359385.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359385.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169885.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169885.fasta NC_007297 34053 snp C T T:20 C:0 CDS + 293/756 98/251 missense_variant c.293C>T p.Ala98Val M5005_RS00250 recO DNA repair protein RecO SRR21169885.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169885.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169885.fasta NC_007297 275090 snp G A A:20 G:0 CDS + 272/633 91/210 missense_variant c.272G>A p.Gly91Glu M5005_RS01490 nicotinate-nucleotide adenylyltransferase SRR21169885.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169885.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169885.fasta NC_007297 317937 del GA G G:19 GA:0 SRR21169885.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169885.fasta NC_007297 478335 snp A C C:20 A:0 CDS + 418/1287 140/428 missense_variant c.418A>C p.Thr140Pro M5005_RS02555 peptidase U32 family protein SRR21169885.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169885.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169885.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169885.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169885.fasta NC_007297 605409 snp C T T:20 C:0 CDS + 506/855 169/284 missense_variant c.506C>T p.Ala169Val M5005_RS03095 rfbD dTDP-4-dehydrorhamnose reductase SRR21169885.fasta NC_007297 617804 snp C A A:20 C:0 CDS + 119/1497 40/498 missense_variant c.119C>A p.Pro40His M5005_RS03150 DUF2142 domain-containing protein SRR21169885.fasta NC_007297 652108 snp A T T:20 A:0 CDS + 1179/1221 393/406 missense_variant c.1179A>T p.Lys393Asn M5005_RS03310 ABC transporter permease SRR21169885.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169885.fasta NC_007297 728708 snp C T T:20 C:0 CDS + 582/930 194/309 synonymous_variant c.582C>T p.Arg194Arg M5005_RS03690 rnz ribonuclease Z SRR21169885.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169885.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169885.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169885.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169885.fasta NC_007297 800948 del AT A A:19 AT:0 SRR21169885.fasta NC_007297 835491 ins G GT GT:18 G:0 CDS - 318/696 106/231 frameshift_variant c.318dupA p.Pro107fs M5005_RS04220 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein SRR21169885.fasta NC_007297 845251 snp C T T:20 C:0 SRR21169885.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169885.fasta NC_007297 861978 snp G A A:20 G:0 CDS + 1250/1728 417/575 missense_variant c.1250G>A p.Gly417Asp M5005_RS04360 ABC transporter ATP-binding protein SRR21169885.fasta NC_007297 888321 snp C T T:20 C:0 CDS - 1200/1404 400/467 missense_variant c.1200G>A p.Met400Ile M5005_RS04490 CitMHS family transporter SRR21169885.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169885.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169885.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169885.fasta NC_007297 975189 snp G A A:20 G:0 CDS - 1124/1503 375/500 missense_variant c.1124C>T p.Ser375Leu M5005_RS04910 pyk pyruvate kinase SRR21169885.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169885.fasta NC_007297 1064592 snp C T T:17 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169885.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169885.fasta NC_007297 1133158 snp T C C:20 T:0 CDS - 602/1545 201/514 missense_variant c.602A>G p.Asp201Gly M5005_RS05715 peptide chain release factor 3 SRR21169885.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169885.fasta NC_007297 1163250 snp A G G:20 A:0 CDS - 230/1494 77/497 missense_variant c.230T>C p.Ile77Thr M5005_RS05905 hypothetical protein SRR21169885.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169885.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169885.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169885.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169885.fasta NC_007297 1423287 snp T C C:20 T:0 SRR21169885.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169885.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169885.fasta NC_007297 1483792 del AT A A:19 AT:0 CDS - 1/885 1/294 frameshift_variant&start_lost c.1delA p.Met1fs M5005_RS07565 heme-binding Shp domain-containing protein SRR21169885.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169885.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169885.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169885.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169885.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169885.fasta NC_007297 1698849 snp C T T:20 C:0 SRR21169885.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169885.fasta NC_007297 1762280 snp T A A:20 T:0 SRR21169885.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR6835671.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR6835671.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR6835671.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha SRR6835671.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR6835671.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR6835671.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR6835671.fasta NC_007297 167489 snp C T T:20 C:0 SRR6835671.fasta NC_007297 203892 snp A G G:20 A:0 CDS + 1189/1785 397/594 missense_variant c.1189A>G p.Ile397Val M5005_RS01155 ABC transporter ATP-binding protein SRR6835671.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR6835671.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR6835671.fasta NC_007297 293229 ins C CT CT:18 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR6835671.fasta NC_007297 316755 snp T C C:20 T:0 CDS + 133/702 45/233 synonymous_variant c.133T>C p.Leu45Leu M5005_RS01710 segregation/condensation protein A SRR6835671.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR6835671.fasta NC_007297 343279 del TA T T:19 TA:0 SRR6835671.fasta NC_007297 511831 snp A T T:20 A:0 SRR6835671.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR6835671.fasta NC_007297 528360 snp A T T:20 A:0 SRR6835671.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR6835671.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR6835671.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR6835671.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR6835671.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR6835671.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR6835671.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR6835671.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR6835671.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR6835671.fasta NC_007297 727443 del TC T T:20 TC:0 CDS + 1202/1239 401/412 frameshift_variant c.1202delC p.Pro401fs M5005_RS03680 hflX GTPase HflX SRR6835671.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR6835671.fasta NC_007297 757387 snp G T T:20 G:0 CDS + 260/1764 87/587 missense_variant c.260G>T p.Ser87Ile M5005_RS03825 lpdA dihydrolipoyl dehydrogenase SRR6835671.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR6835671.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR6835671.fasta NC_007297 782255 snp A G G:20 A:0 SRR6835671.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR6835671.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR6835671.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR6835671.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR6835671.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR6835671.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR6835671.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR6835671.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR6835671.fasta NC_007297 957886 snp T C C:20 T:0 SRR6835671.fasta NC_007297 959346 snp C T T:20 C:0 SRR6835671.fasta NC_007297 983438 snp G C C:20 G:0 SRR6835671.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR6835671.fasta NC_007297 1062837 snp C T T:20 C:0 CDS - 94/129 32/42 missense_variant c.94G>A p.Gly32Arg M5005_RS09505 DUF4044 domain-containing protein SRR6835671.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR6835671.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR6835671.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR6835671.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR6835671.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR6835671.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR6835671.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR6835671.fasta NC_007297 1238124 snp G A A:20 G:0 SRR6835671.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR6835671.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR6835671.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR6835671.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR6835671.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR6835671.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR6835671.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR6835671.fasta NC_007297 1452571 del ACCACCAAAGCCACCTCCGTCAAAACCACCAAAGCCGCCTGCTCCG A A:12 ACCACCAAAGCCACCTCCGTCAAAACCACCAAAGCCGCCTGCTCCG:0 CDS - 302/1158 86/385 disruptive_inframe_deletion c.258_302delCGGAGCAGGCGGCTTTGGTGGTTTTGACGGAGGTGGCTTTGGTGG p.Gly87_Gly101del M5005_RS07415 dnaJ molecular chaperone DnaJ SRR6835671.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR6835671.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR6835671.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR6835671.fasta NC_007297 1535209 snp A G G:20 A:0 SRR6835671.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR6835671.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR6835671.fasta NC_007297 1630160 del CT C C:20 CT:0 SRR6835671.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR6835671.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR6835671.fasta NC_007297 1681641 del TTTTATCGCTAGACCAGTCATCTTCAGGCCAATCTTCAGGCCATTCTTC T T:10 TTTTATCGCTAGACCAGTCATCTTCAGGCCAATCTTCAGGCCATTCTTC:0 CDS - 306/942 87/313 conservative_inframe_deletion c.259_306delGAAGAATGGCCTGAAGATTGGCCTGAAGATGACTGGTCTAGCGATAAA p.Glu87_Lys102del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR6835671.fasta NC_007297 1681713 snp T G G:14 T:0 CDS - 235/942 79/313 missense_variant c.235A>C p.Lys79Gln M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR6835671.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR6835671.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR6835671.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR6835671.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR6835671.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR6835671.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169964.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169964.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169964.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169964.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169964.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169964.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169964.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169964.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169964.fasta NC_007297 292658 snp G A A:20 G:0 CDS + 197/687 66/228 missense_variant c.197G>A p.Arg66His M5005_RS01580 covR two-component system response regulator CovR/CsrR SRR21169964.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169964.fasta NC_007297 294838 snp T C C:20 T:0 SRR21169964.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169964.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169964.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169964.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169964.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169964.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169964.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169964.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169964.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169964.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169964.fasta NC_007297 623005 snp G A A:20 G:0 CDS + 412/531 138/176 missense_variant c.412G>A p.Ala138Thr M5005_RS03175 infC translation initiation factor IF-3 SRR21169964.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169964.fasta NC_007297 636132 snp G A A:20 G:0 CDS + 96/1194 32/397 synonymous_variant c.96G>A p.Gly32Gly M5005_RS03240 CapA family protein SRR21169964.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169964.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169964.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169964.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169964.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169964.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169964.fasta NC_007297 782830 snp A C C:20 A:0 CDS + 423/882 141/293 missense_variant c.423A>C p.Lys141Asn M5005_RS03925 slc2 LPXTG-anchored collagen-like adhesin Scl2/SclB SRR21169964.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169964.fasta NC_007297 787690 snp A G G:20 A:0 CDS + 680/828 227/275 missense_variant c.680A>G p.Asp227Gly M5005_RS03955 PTS system mannose/fructose/sorbose family transporter subunit IID SRR21169964.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169964.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169964.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169964.fasta NC_007297 859271 snp G A A:20 G:0 CDS + 264/1725 88/574 missense_variant c.264G>A p.Met88Ile M5005_RS04355 ABC transporter ATP-binding protein SRR21169964.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169964.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169964.fasta NC_007297 939075 snp A T T:20 A:0 CDS - 2241/2538 747/845 missense_variant c.2241T>A p.Asn747Lys M5005_RS04730 M1 family metallopeptidase SRR21169964.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169964.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169964.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169964.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169964.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169964.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169964.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169964.fasta NC_007297 1067012 snp C A A:20 C:0 CDS - 105/1221 35/406 missense_variant c.105G>T p.Met35Ile M5005_RS05415 MFS transporter SRR21169964.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169964.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169964.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169964.fasta NC_007297 1208106 snp T C C:20 T:0 CDS - 631/1149 211/382 missense_variant c.631A>G p.Ile211Val M5005_RS06180 cell division protein FtsQ/DivIB SRR21169964.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169964.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169964.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169964.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169964.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169964.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169964.fasta NC_007297 1294671 del CT C C:20 CT:0 SRR21169964.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169964.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169964.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169964.fasta NC_007297 1408387 snp A G G:20 A:0 CDS - 1272/1278 424/425 synonymous_variant c.1272T>C p.Tyr424Tyr M5005_RS07145 PBSX family phage terminase large subunit SRR21169964.fasta NC_007297 1420246 snp G A A:20 G:0 CDS - 289/1155 97/384 synonymous_variant c.289C>T p.Leu97Leu M5005_RS07205 DUF2800 domain-containing protein SRR21169964.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169964.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169964.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169964.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169964.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169964.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169964.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169964.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169964.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169964.fasta NC_007297 1681273 del TCCATCAAAG T T:15 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169964.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:19 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169964.fasta NC_007297 1681776 del ACCAGTCATCTTCAGG A A:16 ACCAGTCATCTTCAGG:0 CDS - 171/942 53/313 conservative_inframe_deletion c.157_171delCCTGAAGATGACTGG p.Pro53_Trp57del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169964.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169964.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169964.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169964.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169964.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169964.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR6834819.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR6834819.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR6834819.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha SRR6834819.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR6834819.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR6834819.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR6834819.fasta NC_007297 167489 snp C T T:20 C:0 SRR6834819.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR6834819.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR6834819.fasta NC_007297 293229 ins C CT CT:18 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR6834819.fasta NC_007297 316755 snp T C C:20 T:0 CDS + 133/702 45/233 synonymous_variant c.133T>C p.Leu45Leu M5005_RS01710 segregation/condensation protein A SRR6834819.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR6834819.fasta NC_007297 343279 del TA T T:19 TA:0 SRR6834819.fasta NC_007297 511831 snp A T T:20 A:0 SRR6834819.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR6834819.fasta NC_007297 528360 snp A T T:20 A:0 SRR6834819.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR6834819.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR6834819.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR6834819.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR6834819.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR6834819.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR6834819.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR6834819.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR6834819.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR6834819.fasta NC_007297 727443 del TC T T:20 TC:0 CDS + 1202/1239 401/412 frameshift_variant c.1202delC p.Pro401fs M5005_RS03680 hflX GTPase HflX SRR6834819.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR6834819.fasta NC_007297 757387 snp G T T:20 G:0 CDS + 260/1764 87/587 missense_variant c.260G>T p.Ser87Ile M5005_RS03825 lpdA dihydrolipoyl dehydrogenase SRR6834819.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR6834819.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR6834819.fasta NC_007297 782255 snp A G G:20 A:0 SRR6834819.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR6834819.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR6834819.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR6834819.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR6834819.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR6834819.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR6834819.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR6834819.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR6834819.fasta NC_007297 957886 snp T C C:20 T:0 SRR6834819.fasta NC_007297 959346 snp C T T:20 C:0 SRR6834819.fasta NC_007297 983438 snp G C C:20 G:0 SRR6834819.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR6834819.fasta NC_007297 1062837 snp C T T:20 C:0 CDS - 94/129 32/42 missense_variant c.94G>A p.Gly32Arg M5005_RS09505 DUF4044 domain-containing protein SRR6834819.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR6834819.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR6834819.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR6834819.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR6834819.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR6834819.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR6834819.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR6834819.fasta NC_007297 1238124 snp G A A:20 G:0 SRR6834819.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR6834819.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR6834819.fasta NC_007297 1294671 del CT C C:18 CT:0 SRR6834819.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR6834819.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR6834819.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR6834819.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR6834819.fasta NC_007297 1452571 del ACCACCAAAGCCACCTCCGTCAAAACCACCAAAGCCGCCTGCTCCG A A:12 ACCACCAAAGCCACCTCCGTCAAAACCACCAAAGCCGCCTGCTCCG:0 CDS - 302/1158 86/385 disruptive_inframe_deletion c.258_302delCGGAGCAGGCGGCTTTGGTGGTTTTGACGGAGGTGGCTTTGGTGG p.Gly87_Gly101del M5005_RS07415 dnaJ molecular chaperone DnaJ SRR6834819.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR6834819.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR6834819.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR6834819.fasta NC_007297 1494220 snp G A A:20 G:0 CDS - 632/2520 211/839 missense_variant c.632C>T p.Ser211Leu M5005_RS07590 secA preprotein translocase subunit SecA SRR6834819.fasta NC_007297 1535209 snp A G G:20 A:0 SRR6834819.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR6834819.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR6834819.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR6834819.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR6834819.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR6834819.fasta NC_007297 1681641 del TTTTATCGCTAGACCAGTCATCTTCAGGCCAATCTTCAGGCCATTCTTC T T:10 TTTTATCGCTAGACCAGTCATCTTCAGGCCAATCTTCAGGCCATTCTTC:0 CDS - 306/942 87/313 conservative_inframe_deletion c.259_306delGAAGAATGGCCTGAAGATTGGCCTGAAGATGACTGGTCTAGCGATAAA p.Glu87_Lys102del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR6834819.fasta NC_007297 1681713 snp T G G:14 T:0 CDS - 235/942 79/313 missense_variant c.235A>C p.Lys79Gln M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR6834819.fasta NC_007297 1699626 snp G T T:20 G:0 CDS + 505/843 169/280 missense_variant c.505G>T p.Val169Phe M5005_RS08550 ropB quorum-sensing system transcriptional regulator RopB/Rgg1 SRR6834819.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR6834819.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR6834819.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR6834819.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR6834819.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR6834819.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein ERR1515399.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1515399.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1515399.fasta NC_007297 167489 snp C T T:20 C:0 ERR1515399.fasta NC_007297 260229 snp G A A:20 G:0 CDS + 646/1503 216/500 missense_variant c.646G>A p.Val216Ile M5005_RS01405 ABC transporter permease ERR1515399.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1515399.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1515399.fasta NC_007297 297677 snp C T T:20 C:0 CDS + 189/1311 63/436 synonymous_variant c.189C>T p.Asp63Asp M5005_RS01605 der ribosome biogenesis GTPase Der ERR1515399.fasta NC_007297 323474 snp G A A:20 G:0 CDS + 304/1335 102/444 missense_variant c.304G>A p.Ala102Thr M5005_RS01755 hemolysin family protein ERR1515399.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1515399.fasta NC_007297 350263 snp G A A:20 G:0 ERR1515399.fasta NC_007297 357728 del CT C C:19 CT:0 ERR1515399.fasta NC_007297 374818 del GT G G:19 GT:0 ERR1515399.fasta NC_007297 377608 snp T C C:20 T:0 CDS + 1751/2406 584/801 missense_variant c.1751T>C p.Ile584Thr M5005_RS02020 DNA translocase FtsK ERR1515399.fasta NC_007297 419557 snp T A A:20 T:0 CDS + 246/1944 82/647 synonymous_variant c.246T>A p.Ala82Ala M5005_RS02260 thrS threonine--tRNA ligase ERR1515399.fasta NC_007297 483734 snp G A A:20 G:0 CDS - 386/480 129/159 missense_variant c.386C>T p.Ser129Leu M5005_RS02585 aminoacyl-tRNA deacylase ERR1515399.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1515399.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1515399.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1515399.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1515399.fasta NC_007297 613694 snp A G G:20 A:0 CDS + 960/2475 320/824 synonymous_variant c.960A>G p.Leu320Leu M5005_RS03130 LTA synthase family protein ERR1515399.fasta NC_007297 643351 snp A G G:20 A:0 CDS + 85/936 29/311 missense_variant c.85A>G p.Asn29Asp M5005_RS03285 aspartate carbamoyltransferase catalytic subunit ERR1515399.fasta NC_007297 674386 snp C A A:20 C:0 CDS + 285/849 95/282 synonymous_variant c.285C>A p.Gly95Gly M5005_RS03425 DegV family protein ERR1515399.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1515399.fasta NC_007297 755478 snp C T T:20 C:0 CDS + 87/1410 29/469 synonymous_variant c.87C>T p.Thr29Thr M5005_RS03815 dihydrolipoamide acetyltransferase ERR1515399.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1515399.fasta NC_007297 768950 snp C T T:20 C:0 CDS + 50/642 17/213 missense_variant c.50C>T p.Ala17Val M5005_RS03865 hypothetical protein ERR1515399.fasta NC_007297 777479 ins A ATGGCTGGT ATGGCTGGT:17 A:0 CDS + 14/870 5/289 frameshift_variant c.6_13dupTGGTTGGC p.Arg5fs M5005_RS03895 cas1 type II CRISPR-associated endonuclease Cas1 ERR1515399.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1515399.fasta NC_007297 782255 snp A G G:20 A:0 ERR1515399.fasta NC_007297 782941 complex TGGC CGGT CGGT:11 TGGC:0 CDS + 534/882 178/293 synonymous_variant c.534_537delTGGCinsCGGT p.180 M5005_RS03925 slc2 LPXTG-anchored collagen-like adhesin Scl2/SclB ERR1515399.fasta NC_007297 782953 complex TCTT CCTC CCTC:12 TCTT:0 CDS + 546/882 182/293 synonymous_variant c.546_549delTCTTinsCCTC p.184 M5005_RS03925 slc2 LPXTG-anchored collagen-like adhesin Scl2/SclB ERR1515399.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1515399.fasta NC_007297 821812 snp G T T:20 G:0 CDS + 96/777 32/258 synonymous_variant c.96G>T p.Gly32Gly M5005_RS04160 ABC transporter permease ERR1515399.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1515399.fasta NC_007297 852899 snp C T T:20 C:0 CDS + 298/570 100/189 missense_variant c.298C>T p.Arg100Cys M5005_RS04315 thymidine kinase ERR1515399.fasta NC_007297 891786 snp C T T:20 C:0 CDS + 1067/1122 356/373 missense_variant c.1067C>T p.Ser356Phe M5005_RS04505 sodium ion-translocating decarboxylase subunit beta ERR1515399.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1515399.fasta NC_007297 940340 snp T C C:20 T:0 CDS - 976/2538 326/845 missense_variant c.976A>G p.Ile326Val M5005_RS04730 M1 family metallopeptidase ERR1515399.fasta NC_007297 957886 snp T C C:20 T:0 ERR1515399.fasta NC_007297 959346 snp C T T:20 C:0 ERR1515399.fasta NC_007297 996153 snp T C C:20 T:0 CDS - 101/1485 34/494 missense_variant c.101A>G p.Asp34Gly M5005_RS05010 distal tail protein Dit ERR1515399.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1515399.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1515399.fasta NC_007297 1115324 del AC A A:20 AC:0 CDS - 393/963 131/320 frameshift_variant c.393delG p.Tyr132fs M5005_RS05630 competence protein CoiA ERR1515399.fasta NC_007297 1119016 snp G A A:20 G:0 CDS + 229/1221 77/406 missense_variant c.229G>A p.Gly77Arg M5005_RS05650 DUF3114 domain-containing protein ERR1515399.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1515399.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1515399.fasta NC_007297 1163064 snp T C C:20 T:0 CDS - 416/1494 139/497 missense_variant c.416A>G p.Asp139Gly M5005_RS05905 hypothetical protein ERR1515399.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1515399.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1515399.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1515399.fasta NC_007297 1247749 del AT A A:20 AT:0 CDS - 480/2409 160/802 frameshift_variant c.480delA p.Lys160fs M5005_RS06370 CRISPR-associated helicase/endonuclease Cas3 ERR1515399.fasta NC_007297 1301353 snp T G G:20 T:0 CDS - 1242/1899 414/632 missense_variant c.1242A>C p.Arg414Ser M5005_RS06625 pknB Stk1 family PASTA domain-containing Ser/Thr kinase ERR1515399.fasta NC_007297 1350795 del GT G G:19 GT:0 ERR1515399.fasta NC_007297 1353011 snp G T T:20 G:0 CDS - 416/1839 139/612 missense_variant c.416C>A p.Ala139Asp M5005_RS06850 glpO type 1 glycerol-3-phosphate oxidase ERR1515399.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1515399.fasta NC_007297 1446758 snp G A A:20 G:0 CDS - 51/735 17/244 synonymous_variant c.51C>T p.Ile17Ile M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1515399.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1515399.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1515399.fasta NC_007297 1472855 snp T C C:20 T:0 CDS - 1742/2016 581/671 missense_variant c.1742A>G p.Asp581Gly M5005_RS07520 recG ATP-dependent DNA helicase RecG ERR1515399.fasta NC_007297 1473596 snp G A A:20 G:0 CDS - 1001/2016 334/671 missense_variant c.1001C>T p.Thr334Ile M5005_RS07520 recG ATP-dependent DNA helicase RecG ERR1515399.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1515399.fasta NC_007297 1530996 snp A G G:20 A:0 ERR1515399.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1515399.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1515399.fasta NC_007297 1632366 snp T C C:20 T:0 CDS - 1113/1260 371/419 synonymous_variant c.1113A>G p.Gly371Gly M5005_RS08270 rseP RIP metalloprotease RseP ERR1515399.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1515399.fasta NC_007297 1645618 snp C T T:20 C:0 CDS + 1247/1323 416/440 missense_variant c.1247C>T p.Thr416Ile M5005_RS08315 ska streptokinase ERR1515399.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1515399.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1515399.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1515399.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169884.fasta NC_007297 10952 snp G T T:20 G:0 CDS + 1286/1287 429/428 stop_lost&splice_region_variant c.1286G>T p.Ter429Leuext*? M5005_RS00050 tilS tRNA lysidine(34) synthetase TilS SRR21169884.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169884.fasta NC_007297 35914 snp C T T:20 C:0 SRR21169884.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169884.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169884.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169884.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169884.fasta NC_007297 124856 snp G T T:20 G:0 CDS - 59/185 20/60 missense_variant c.59C>A p.Thr20Lys M5005_RS10000 hypothetical protein SRR21169884.fasta NC_007297 149434 snp T G G:20 T:0 CDS + 153/540 51/179 synonymous_variant c.153T>G p.Val51Val M5005_RS00905 nusG transcription termination/antitermination protein NusG SRR21169884.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169884.fasta NC_007297 251764 snp G T T:20 G:0 CDS + 383/1227 128/408 missense_variant c.383G>T p.Trp128Leu M5005_RS01375 cysteine desulfurase SRR21169884.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169884.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169884.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169884.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169884.fasta NC_007297 447065 del AT A A:19 AT:0 SRR21169884.fasta NC_007297 484099 snp G A A:20 G:0 CDS - 21/480 7/159 synonymous_variant c.21C>T p.Leu7Leu M5005_RS02585 aminoacyl-tRNA deacylase SRR21169884.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169884.fasta NC_007297 522609 snp C T T:20 C:0 CDS + 652/765 218/254 missense_variant c.652C>T p.Arg218Cys M5005_RS02760 (S)-acetoin forming diacetyl reductase SRR21169884.fasta NC_007297 526253 snp C T T:20 C:0 CDS + 588/1194 196/397 synonymous_variant c.588C>T p.His196His M5005_RS02770 pyridoxal phosphate-dependent aminotransferase SRR21169884.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169884.fasta NC_007297 559598 snp G T T:20 G:0 SRR21169884.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169884.fasta NC_007297 576801 snp G A A:20 G:0 CDS + 148/495 50/164 missense_variant c.148G>A p.Asp50Asn M5005_RS02970 atpF F0F1 ATP synthase subunit B SRR21169884.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169884.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169884.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169884.fasta NC_007297 616979 snp T A A:20 T:0 CDS + 561/1287 187/428 synonymous_variant c.561T>A p.Gly187Gly M5005_RS03145 lipopolysaccharide biosynthesis protein SRR21169884.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169884.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169884.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169884.fasta NC_007297 736742 snp C T T:20 C:0 CDS + 1054/1107 352/368 missense_variant c.1054C>T p.Pro352Ser M5005_RS03730 NAD(P)/FAD-dependent oxidoreductase SRR21169884.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169884.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169884.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169884.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169884.fasta NC_007297 792831 del CT C C:18 CT:0 CDS + 23/690 8/229 frameshift_variant c.23delT p.Phe8fs M5005_RS03985 YjjG family noncanonical pyrimidine nucleotidase SRR21169884.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169884.fasta NC_007297 934904 snp G T T:20 G:0 SRR21169884.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169884.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169884.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169884.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169884.fasta NC_007297 1008001 ins G GC GC:19 G:0 SRR21169884.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169884.fasta NC_007297 1058409 snp C T T:20 C:0 CDS - 463/1095 155/364 missense_variant c.463G>A p.Gly155Ser M5005_RS05370 DUF871 domain-containing protein SRR21169884.fasta NC_007297 1064592 snp C T T:17 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169884.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169884.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169884.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169884.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169884.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169884.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169884.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169884.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169884.fasta NC_007297 1261920 snp T G G:20 T:0 CDS - 1364/1485 455/494 missense_variant c.1364A>C p.Glu455Ala M5005_RS06440 response regulator transcription factor SRR21169884.fasta NC_007297 1367282 snp G A A:20 G:0 CDS - 812/825 271/274 missense_variant c.812C>T p.Ala271Val M5005_RS06915 Cof-type HAD-IIB family hydrolase SRR21169884.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169884.fasta NC_007297 1396485 snp G A A:20 G:0 CDS - 4027/4383 1343/1460 synonymous_variant c.4027C>T p.Leu1343Leu M5005_RS07075 tape measure protein SRR21169884.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169884.fasta NC_007297 1416033 snp G A A:20 G:0 CDS - 408/2385 136/794 synonymous_variant c.408C>T p.Ile136Ile M5005_RS07185 phage/plasmid primase, P4 family SRR21169884.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169884.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169884.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169884.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169884.fasta NC_007297 1556543 snp G A A:20 G:0 CDS - 1134/1197 378/398 synonymous_variant c.1134C>T p.Gly378Gly M5005_RS07900 phosphoglycerate kinase SRR21169884.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169884.fasta NC_007297 1593538 ins G GC GC:18 G:0 CDS - 168/480 56/159 frameshift_variant c.168dupG p.Gln57fs M5005_RS08075 ABC transporter ATP-binding protein SRR21169884.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169884.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169884.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169884.fasta NC_007297 1681476 snp C T T:20 C:0 CDS - 472/942 158/313 missense_variant c.472G>A p.Gly158Arg M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169884.fasta NC_007297 1694174 del CT C C:19 CT:0 SRR21169884.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169884.fasta NC_007297 1733066 snp A G G:20 A:0 CDS + 617/2031 206/676 missense_variant c.617A>G p.Asn206Ser M5005_RS08710 urocanate hydratase SRR21169884.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169884.fasta NC_007297 1752093 snp A G G:20 A:0 CDS - 1947/2025 649/674 synonymous_variant c.1947T>C p.Val649Val M5005_RS08775 treP PTS system trehalose-specific EIIBC component SRR21169884.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169884.fasta NC_007297 1815569 snp A G G:20 A:0 CDS - 162/1026 54/341 synonymous_variant c.162T>C p.Phe54Phe M5005_RS09085 helix-turn-helix domain-containing protein SRR21169806.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169806.fasta NC_007297 64197 snp T C C:20 T:0 SRR21169806.fasta NC_007297 76208 del AAAG A A:18 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169806.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169806.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169806.fasta NC_007297 116162 mnp AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169806.fasta NC_007297 126007 snp C T T:20 C:0 CDS - 661/666 221/221 missense_variant c.661G>A p.Glu221Lys M5005_RS00790 hypothetical protein SRR21169806.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169806.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169806.fasta NC_007297 257323 snp T A A:20 T:0 SRR21169806.fasta NC_007297 257328 snp G T T:20 G:0 SRR21169806.fasta NC_007297 257348 snp C A A:20 C:0 SRR21169806.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169806.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169806.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169806.fasta NC_007297 343279 del TA T T:20 TA:0 SRR21169806.fasta NC_007297 441982 snp T C C:20 T:0 CDS + 104/969 35/322 missense_variant c.104T>C p.Ile35Thr M5005_RS02355 serine kinase SRR21169806.fasta NC_007297 456357 snp A G G:20 A:0 CDS + 33/900 11/299 synonymous_variant c.33A>G p.Lys11Lys M5005_RS10035 histidyl-tRNA synthetase SRR21169806.fasta NC_007297 458987 del AC A A:18 AC:0 SRR21169806.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169806.fasta NC_007297 516326 del CA C C:20 CA:0 SRR21169806.fasta NC_007297 528231 snp A G G:20 A:0 SRR21169806.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169806.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:16 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169806.fasta NC_007297 559488 snp A T T:20 A:0 SRR21169806.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169806.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169806.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169806.fasta NC_007297 595011 snp G A A:20 G:0 CDS + 2486/3216 829/1071 missense_variant c.2486G>A p.Ser829Asn M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169806.fasta NC_007297 599474 snp T A A:20 T:0 SRR21169806.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169806.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169806.fasta NC_007297 626494 snp G A A:10 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169806.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169806.fasta NC_007297 681603 snp A G G:20 A:0 SRR21169806.fasta NC_007297 681696 snp T A A:20 T:0 SRR21169806.fasta NC_007297 684809 snp A G G:20 A:0 CDS + 181/879 61/292 missense_variant c.181A>G p.Ile61Val M5005_RS03470 mvk mevalonate kinase SRR21169806.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169806.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169806.fasta NC_007297 741899 snp C A A:20 C:0 CDS + 375/1248 125/415 synonymous_variant c.375C>A p.Gly125Gly M5005_RS03760 tetratricopeptide repeat protein SRR21169806.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169806.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169806.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169806.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169806.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169806.fasta NC_007297 806250 snp G T T:20 G:0 CDS + 617/1347 206/448 missense_variant c.617G>T p.Arg206Ile M5005_RS04050 sensor histidine kinase SRR21169806.fasta NC_007297 810303 snp T A A:20 T:0 SRR21169806.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169806.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169806.fasta NC_007297 854429 snp C T T:20 C:0 CDS + 145/840 49/279 missense_variant c.145C>T p.Pro49Ser M5005_RS04325 prmC peptide chain release factor N(5)-glutamine methyltransferase SRR21169806.fasta NC_007297 899397 snp G C C:20 G:0 CDS - 834/1071 278/356 synonymous_variant c.834C>G p.Gly278Gly M5005_RS04550 xerS tyrosine recombinase XerS SRR21169806.fasta NC_007297 916225 snp C A A:20 C:0 SRR21169806.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169806.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169806.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169806.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169806.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169806.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169806.fasta NC_007297 959351 snp T A A:20 T:0 SRR21169806.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169806.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169806.fasta NC_007297 1049715 snp A G G:20 A:0 SRR21169806.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169806.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169806.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169806.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169806.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169806.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169806.fasta NC_007297 1223948 snp G T T:20 G:0 SRR21169806.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169806.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169806.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169806.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169806.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169806.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169806.fasta NC_007297 1391003 snp C A A:20 C:0 CDS - 583/1908 195/635 missense_variant c.583G>T p.Ala195Ser M5005_RS07050 gp58-like family protein SRR21169806.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169806.fasta NC_007297 1404939 complex TTTA ATTT ATTT:18 TTTA:0 SRR21169806.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169806.fasta NC_007297 1408878 ins C CA CA:19 C:0 CDS - 780/1278 260/425 frameshift_variant c.780dupT p.Gly261fs M5005_RS07145 PBSX family phage terminase large subunit SRR21169806.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169806.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169806.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169806.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169806.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169806.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169806.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169806.fasta NC_007297 1630160 del CT C C:20 CT:0 SRR21169806.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169806.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169806.fasta NC_007297 1681791 del GCCAGTCATCTCCAGA G G:14 GCCAGTCATCTCCAGA:1 CDS - 156/942 48/313 conservative_inframe_deletion c.142_156delTCTGGAGATGACTGG p.Ser48_Trp52del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169806.fasta NC_007297 1694316 snp C T T:20 C:0 CDS - 199/297 67/98 missense_variant c.199G>A p.Val67Ile M5005_RS08525 DUF4298 domain-containing protein SRR21169806.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169806.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169806.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169806.fasta NC_007297 1787115 snp T A A:20 T:0 CDS + 254/912 85/303 missense_variant c.254T>A p.Ile85Asn M5005_RS08945 transcriptional regulator SRR21169806.fasta NC_007297 1787124 snp G T T:20 G:0 CDS + 263/912 88/303 missense_variant c.263G>T p.Arg88Ile M5005_RS08945 transcriptional regulator SRR21169806.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169806.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169806.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR11659687.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR11659687.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR11659687.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha SRR11659687.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR11659687.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR11659687.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR11659687.fasta NC_007297 167489 snp C T T:20 C:0 SRR11659687.fasta NC_007297 182627 snp A G G:20 A:0 SRR11659687.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR11659687.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR11659687.fasta NC_007297 293229 ins C CT CT:18 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR11659687.fasta NC_007297 317937 del GA G G:20 GA:0 SRR11659687.fasta NC_007297 319050 snp C T T:20 C:0 SRR11659687.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR11659687.fasta NC_007297 343279 del TA T T:18 TA:0 SRR11659687.fasta NC_007297 385005 del GA G G:18 GA:0 SRR11659687.fasta NC_007297 409415 del CA C C:20 CA:0 SRR11659687.fasta NC_007297 458732 snp T C C:20 T:0 SRR11659687.fasta NC_007297 512124 snp C G G:20 C:0 CDS + 35/795 12/264 missense_variant c.35C>G p.Ala12Gly M5005_RS02710 gluconate 5-dehydrogenase SRR11659687.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR11659687.fasta NC_007297 525911 snp G A A:20 G:0 CDS + 246/1194 82/397 synonymous_variant c.246G>A p.Leu82Leu M5005_RS02770 pyridoxal phosphate-dependent aminotransferase SRR11659687.fasta NC_007297 528360 snp A T T:20 A:0 SRR11659687.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR11659687.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR11659687.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR11659687.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR11659687.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR11659687.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR11659687.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR11659687.fasta NC_007297 629986 snp G A A:20 G:0 SRR11659687.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR11659687.fasta NC_007297 678116 snp G A A:20 G:0 CDS + 1837/1878 613/625 missense_variant c.1837G>A p.Ala613Thr M5005_RS03435 ABC-F family ATP-binding cassette domain-containing protein SRR11659687.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR11659687.fasta NC_007297 712345 snp C G G:20 C:0 CDS + 1045/1269 349/422 missense_variant c.1045C>G p.Leu349Val M5005_RS03605 dihydroorotase SRR11659687.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR11659687.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR11659687.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR11659687.fasta NC_007297 782255 snp A G G:20 A:0 SRR11659687.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR11659687.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR11659687.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR11659687.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR11659687.fasta NC_007297 889745 snp C T T:20 C:0 SRR11659687.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR11659687.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR11659687.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR11659687.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR11659687.fasta NC_007297 957886 snp T C C:20 T:0 SRR11659687.fasta NC_007297 959346 snp C T T:20 C:0 SRR11659687.fasta NC_007297 983438 snp G C C:20 G:0 SRR11659687.fasta NC_007297 1024866 snp G C C:20 G:0 CDS - 341/2265 114/754 missense_variant c.341C>G p.Ala114Gly M5005_RS05230 glgP glycogen/starch/alpha-glucan family phosphorylase SRR11659687.fasta NC_007297 1025877 snp G A A:20 G:0 CDS - 858/1494 286/497 synonymous_variant c.858C>T p.Phe286Phe M5005_RS05235 malQ 4-alpha-glucanotransferase SRR11659687.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR11659687.fasta NC_007297 1064592 snp C T T:21 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR11659687.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR11659687.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR11659687.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR11659687.fasta NC_007297 1205792 snp A G G:20 A:0 CDS - 197/1320 66/439 missense_variant c.197T>C p.Leu66Ser M5005_RS06170 ftsZ cell division protein FtsZ SRR11659687.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR11659687.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR11659687.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR11659687.fasta NC_007297 1238124 snp G A A:20 G:0 SRR11659687.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR11659687.fasta NC_007297 1247749 del AT A A:20 AT:0 CDS - 480/2409 160/802 frameshift_variant c.480delA p.Lys160fs M5005_RS06370 CRISPR-associated helicase/endonuclease Cas3 SRR11659687.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR11659687.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR11659687.fasta NC_007297 1363314 snp G A A:20 G:0 CDS - 1175/1632 392/543 missense_variant c.1175C>T p.Thr392Ile M5005_RS06895 Na/Pi cotransporter family protein SRR11659687.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR11659687.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR11659687.fasta NC_007297 1401006 snp G A A:20 G:0 CDS - 284/456 95/151 missense_variant c.284C>T p.Ala95Val M5005_RS07085 tail assembly chaperone SRR11659687.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR11659687.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR11659687.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR11659687.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR11659687.fasta NC_007297 1469468 snp C T T:20 C:0 CDS + 114/966 38/321 synonymous_variant c.114C>T p.Ala38Ala M5005_RS07505 asparaginase SRR11659687.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR11659687.fasta NC_007297 1535209 snp A G G:20 A:0 SRR11659687.fasta NC_007297 1559080 snp G A A:20 G:0 CDS - 764/891 255/296 missense_variant c.764C>T p.Thr255Ile M5005_RS07910 SPFH domain-containing protein SRR11659687.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR11659687.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR11659687.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR11659687.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR11659687.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR11659687.fasta NC_007297 1683454 snp T C C:20 T:0 CDS - 137/1455 46/484 missense_variant c.137A>G p.Asn46Ser M5005_RS08475 emm M protein SRR11659687.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR11659687.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR11659687.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR11659687.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR11659687.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR11659687.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR11659687.fasta NC_007297 1830126 snp G A A:20 G:0 CDS + 652/1620 218/539 missense_variant c.652G>A p.Val218Ile M5005_RS09145 ATP-binding cassette domain-containing protein SRR21169820.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169820.fasta NC_007297 35914 snp C T T:20 C:0 SRR21169820.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169820.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169820.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169820.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169820.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169820.fasta NC_007297 291007 snp C T T:20 C:0 CDS + 476/897 159/298 missense_variant c.476C>T p.Ala159Val M5005_RS01570 htpX zinc metalloprotease HtpX SRR21169820.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169820.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169820.fasta NC_007297 307585 snp C G G:20 C:0 SRR21169820.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169820.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169820.fasta NC_007297 348561 snp A G G:20 A:0 CDS + 3817/4944 1273/1647 missense_variant c.3817A>G p.Lys1273Glu M5005_RS01880 scpC CXC chemokine-degrading serine protease SpyCEP SRR21169820.fasta NC_007297 447065 del AT A A:19 AT:0 SRR21169820.fasta NC_007297 484099 snp G A A:20 G:0 CDS - 21/480 7/159 synonymous_variant c.21C>T p.Leu7Leu M5005_RS02585 aminoacyl-tRNA deacylase SRR21169820.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169820.fasta NC_007297 522609 snp C T T:20 C:0 CDS + 652/765 218/254 missense_variant c.652C>T p.Arg218Cys M5005_RS02760 (S)-acetoin forming diacetyl reductase SRR21169820.fasta NC_007297 526253 snp C T T:20 C:0 CDS + 588/1194 196/397 synonymous_variant c.588C>T p.His196His M5005_RS02770 pyridoxal phosphate-dependent aminotransferase SRR21169820.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169820.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169820.fasta NC_007297 576801 snp G A A:20 G:0 CDS + 148/495 50/164 missense_variant c.148G>A p.Asp50Asn M5005_RS02970 atpF F0F1 ATP synthase subunit B SRR21169820.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169820.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169820.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169820.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169820.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169820.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169820.fasta NC_007297 736742 snp C T T:20 C:0 CDS + 1054/1107 352/368 missense_variant c.1054C>T p.Pro352Ser M5005_RS03730 NAD(P)/FAD-dependent oxidoreductase SRR21169820.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169820.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169820.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169820.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169820.fasta NC_007297 792831 del CT C C:19 CT:0 CDS + 23/690 8/229 frameshift_variant c.23delT p.Phe8fs M5005_RS03985 YjjG family noncanonical pyrimidine nucleotidase SRR21169820.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169820.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169820.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169820.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169820.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169820.fasta NC_007297 960745 snp G A A:20 G:0 CDS - 24/540 8/179 synonymous_variant c.24C>T p.Asn8Asn M5005_RS04840 Asp23/Gls24 family envelope stress response protein SRR21169820.fasta NC_007297 984288 snp C G G:20 C:0 SRR21169820.fasta NC_007297 1008001 ins G GC GC:19 G:0 SRR21169820.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169820.fasta NC_007297 1058409 snp C T T:20 C:0 CDS - 463/1095 155/364 missense_variant c.463G>A p.Gly155Ser M5005_RS05370 DUF871 domain-containing protein SRR21169820.fasta NC_007297 1064592 snp C T T:17 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169820.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169820.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169820.fasta NC_007297 1122154 snp T C C:20 T:0 CDS - 925/1041 309/346 missense_variant c.925A>G p.Thr309Ala M5005_RS05675 holA DNA polymerase III subunit delta SRR21169820.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169820.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169820.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169820.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169820.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169820.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169820.fasta NC_007297 1261920 snp T G G:20 T:0 CDS - 1364/1485 455/494 missense_variant c.1364A>C p.Glu455Ala M5005_RS06440 response regulator transcription factor SRR21169820.fasta NC_007297 1345678 snp G A A:20 G:0 CDS - 1276/1986 426/661 missense_variant c.1276C>T p.Arg426Cys M5005_RS06825 tkt transketolase SRR21169820.fasta NC_007297 1367282 snp G A A:20 G:0 CDS - 812/825 271/274 missense_variant c.812C>T p.Ala271Val M5005_RS06915 Cof-type HAD-IIB family hydrolase SRR21169820.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169820.fasta NC_007297 1396485 snp G A A:20 G:0 CDS - 4027/4383 1343/1460 synonymous_variant c.4027C>T p.Leu1343Leu M5005_RS07075 tape measure protein SRR21169820.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169820.fasta NC_007297 1416033 snp G A A:20 G:0 CDS - 408/2385 136/794 synonymous_variant c.408C>T p.Ile136Ile M5005_RS07185 phage/plasmid primase, P4 family SRR21169820.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169820.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169820.fasta NC_007297 1459679 snp C T T:20 C:0 SRR21169820.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169820.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169820.fasta NC_007297 1550088 snp A G G:20 A:0 CDS - 216/1029 72/342 synonymous_variant c.216T>C p.Ser72Ser M5005_RS07860 tsaD tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD SRR21169820.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169820.fasta NC_007297 1593538 ins G GC GC:18 G:0 CDS - 168/480 56/159 frameshift_variant c.168dupG p.Gln57fs M5005_RS08075 ABC transporter ATP-binding protein SRR21169820.fasta NC_007297 1607285 snp T C C:20 T:0 SRR21169820.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169820.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169820.fasta NC_007297 1681273 del TCCATCAAAG T T:18 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169820.fasta NC_007297 1694174 del CT C C:19 CT:0 SRR21169820.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169820.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169820.fasta NC_007297 1752093 snp A G G:20 A:0 CDS - 1947/2025 649/674 synonymous_variant c.1947T>C p.Val649Val M5005_RS08775 treP PTS system trehalose-specific EIIBC component SRR21169820.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169820.fasta NC_007297 1815569 snp A G G:20 A:0 CDS - 162/1026 54/341 synonymous_variant c.162T>C p.Phe54Phe M5005_RS09085 helix-turn-helix domain-containing protein SRR21169820.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359670.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359670.fasta NC_007297 41229 snp C A A:20 C:0 CDS + 504/1455 168/484 synonymous_variant c.504C>A p.Gly168Gly M5005_RS00275 purF amidophosphoribosyltransferase ERR1359670.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359670.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359670.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359670.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359670.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359670.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359670.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359670.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359670.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359670.fasta NC_007297 343279 del TA T T:19 TA:0 ERR1359670.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359670.fasta NC_007297 524982 snp G A A:20 G:0 CDS + 2111/2460 704/819 stop_gained c.2111G>A p.Trp704* M5005_RS02765 bifunctional DnaQ family exonuclease/ATP-dependent helicase ERR1359670.fasta NC_007297 527965 snp T C C:20 T:0 CDS + 1086/1347 362/448 synonymous_variant c.1086T>C p.Asp362Asp M5005_RS02775 asnS asparagine--tRNA ligase ERR1359670.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359670.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359670.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359670.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359670.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359670.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359670.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359670.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359670.fasta NC_007297 629292 snp G A A:20 G:0 CDS + 963/1167 321/388 missense_variant c.963G>A p.Met321Ile M5005_RS03205 aroC chorismate synthase ERR1359670.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359670.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359670.fasta NC_007297 724990 snp C T T:20 C:0 CDS - 151/177 51/58 missense_variant c.151G>A p.Ala51Thr M5005_RS09425 DUF3042 family protein ERR1359670.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359670.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359670.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359670.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359670.fasta NC_007297 782340 ins G GAACAAAACAA GAACAAAACAA:16 G:0 ERR1359670.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359670.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359670.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359670.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359670.fasta NC_007297 869083 snp G A A:20 G:0 CDS + 346/414 116/137 missense_variant c.346G>A p.Asp116Asn M5005_RS04385 SMU1112c/YaeR family gloxylase I-like metalloprotein ERR1359670.fasta NC_007297 896357 snp C T T:20 C:0 CDS + 1025/1395 342/464 missense_variant c.1025C>T p.Pro342Leu M5005_RS04535 oxaloacetate decarboxylase subunit alpha ERR1359670.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359670.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359670.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359670.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359670.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359670.fasta NC_007297 969011 snp A G G:20 A:0 ERR1359670.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359670.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359670.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359670.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359670.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359670.fasta NC_007297 1134050 snp C T T:20 C:0 CDS - 653/696 218/231 missense_variant c.653G>A p.Gly218Asp M5005_RS05720 YwaF family protein ERR1359670.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359670.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359670.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359670.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359670.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359670.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359670.fasta NC_007297 1294671 del CT C C:19 CT:0 ERR1359670.fasta NC_007297 1348993 snp C T T:20 C:0 CDS - 448/1500 150/499 missense_variant c.448G>A p.Glu150Lys M5005_RS06835 helix-turn-helix domain-containing protein ERR1359670.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359670.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359670.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359670.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359670.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359670.fasta NC_007297 1485089 snp A G G:20 A:0 CDS - 3588/3828 1196/1275 synonymous_variant c.3588T>C p.Ser1196Ser M5005_RS07570 shr heme-binding protein Shr ERR1359670.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359670.fasta NC_007297 1503284 snp A G G:20 A:0 CDS - 315/1884 105/627 synonymous_variant c.315T>C p.Ile105Ile M5005_RS07625 sucrose-specific PTS transporter subunit IIBC ERR1359670.fasta NC_007297 1532781 snp C T T:20 C:0 CDS - 12/753 4/250 missense_variant c.12G>A p.Met4Ile M5005_RS07770 CppA N-terminal domain-containing protein ERR1359670.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359670.fasta NC_007297 1592453 del AT A A:19 AT:0 CDS - 38/1908 13/635 frameshift_variant c.38delA p.Asn13fs M5005_RS08065 FtsX-like permease family protein ERR1359670.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359670.fasta NC_007297 1630132 snp C A A:20 C:0 ERR1359670.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359670.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359670.fasta NC_007297 1663701 snp G A A:20 G:0 ERR1359670.fasta NC_007297 1681273 del TCCATCAAAG T T:12 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359670.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359670.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359670.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359670.fasta NC_007297 1751051 snp C T T:20 C:0 CDS - 898/1629 300/542 missense_variant c.898G>A p.Gly300Ser M5005_RS08770 treC alpha,alpha-phosphotrehalase ERR1359670.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359670.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359670.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein ERR1359454.fasta NC_007297 5473 ins A AT AT:19 A:0 CDS + 244/3504 82/1167 frameshift_variant c.243dupT p.Ala82fs M5005_RS00030 mfd transcription-repair coupling factor ERR1359454.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359454.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359454.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1359454.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359454.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359454.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359454.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359454.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359454.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359454.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359454.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359454.fasta NC_007297 343279 del TA T T:19 TA:0 ERR1359454.fasta NC_007297 488696 snp T C C:20 T:0 CDS - 710/1800 237/599 missense_variant c.710A>G p.Glu237Gly M5005_RS02615 pepF oligoendopeptidase F ERR1359454.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359454.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359454.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359454.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359454.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359454.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359454.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359454.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359454.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359454.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359454.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359454.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359454.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359454.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359454.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359454.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359454.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359454.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359454.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359454.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359454.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359454.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359454.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359454.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359454.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359454.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359454.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359454.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359454.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359454.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359454.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359454.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359454.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359454.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359454.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359454.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359454.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359454.fasta NC_007297 1294671 del CT C C:19 CT:0 ERR1359454.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359454.fasta NC_007297 1373395 ins T TG TG:20 T:0 CDS - 444/474 148/157 frameshift_variant c.444_445insC p.Ile149fs M5005_RS06955 PTS sugar transporter subunit IIA ERR1359454.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359454.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359454.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359454.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359454.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359454.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359454.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359454.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359454.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359454.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359454.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359454.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359454.fasta NC_007297 1681713 snp T G G:14 T:0 CDS - 235/942 79/313 missense_variant c.235A>C p.Lys79Gln M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359454.fasta NC_007297 1699112 snp G T T:20 G:0 ERR1359454.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359454.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359454.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359454.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359454.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359454.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein A21-7.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase A21-7.fasta NC_007297 36305 snp C A A:20 C:0 CDS + 294/705 98/234 synonymous_variant c.294C>A p.Gly98Gly M5005_RS00265 purC phosphoribosylaminoimidazolesuccinocarboxamide synthase A21-7.fasta NC_007297 76208 del AAAG A A:20 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase A21-7.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha A21-7.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein A21-7.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA A21-7.fasta NC_007297 116162 complex AC CA CA:20 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA A21-7.fasta NC_007297 150749 snp C A A:20 C:0 CDS + 558/1356 186/451 synonymous_variant c.558C>A p.Ala186Ala M5005_RS00910 nga nicotine adenine dinucleotide glycohydrolase A21-7.fasta NC_007297 167489 snp C T T:20 C:0 A21-7.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD A21-7.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein A21-7.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS A21-7.fasta NC_007297 317937 del GA G G:20 GA:0 A21-7.fasta NC_007297 322545 snp G T T:20 G:0 CDS + 62/555 21/184 missense_variant c.62G>T p.Ser21Ile M5005_RS01750 tRNA (mnm(5)s(2)U34)-methyltransferase A21-7.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' A21-7.fasta NC_007297 343279 del TA T T:19 TA:0 A21-7.fasta NC_007297 397788 snp A T T:20 A:0 CDS + 25/399 9/132 missense_variant c.25A>T p.Ile9Leu M5005_RS02150 hypothetical protein A21-7.fasta NC_007297 504228 snp G T T:20 G:0 CDS + 2062/2682 688/893 missense_variant c.2062G>T p.Ala688Ser M5005_RS02670 cation-translocating P-type ATPase A21-7.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase A21-7.fasta NC_007297 528360 snp A T T:20 A:0 A21-7.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase A21-7.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S A21-7.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase A21-7.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B A21-7.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD A21-7.fasta NC_007297 609532 snp A C C:20 A:0 CDS + 774/1206 258/401 missense_variant c.774A>C p.Lys258Asn M5005_RS03115 ABC transporter ATP-binding protein A21-7.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein A21-7.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase A21-7.fasta NC_007297 638948 snp C T T:20 C:0 CDS + 184/915 62/304 synonymous_variant c.184C>T p.Leu62Leu M5005_RS03260 LysR family transcriptional regulator A21-7.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD A21-7.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase A21-7.fasta NC_007297 694233 snp C T T:20 C:0 CDS + 1205/1230 402/409 missense_variant c.1205C>T p.Ser402Leu M5005_RS03515 clpX ATP-dependent Clp protease ATP-binding subunit ClpX A21-7.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ A21-7.fasta NC_007297 767380 snp G T T:20 G:0 A21-7.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase A21-7.fasta NC_007297 773501 del CA C C:18 CA:0 CDS + 137/4107 46/1368 frameshift_variant c.137delA p.Asn46fs M5005_RS03890 cas9 type II CRISPR RNA-guided endonuclease Cas9 A21-7.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase A21-7.fasta NC_007297 782255 snp A G G:20 A:0 A21-7.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein A21-7.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein A21-7.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase A21-7.fasta NC_007297 828608 snp C G G:20 C:0 CDS - 1015/1050 339/349 missense_variant c.1015G>C p.Ala339Pro M5005_RS04190 zinc-dependent alcohol dehydrogenase family protein A21-7.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein A21-7.fasta NC_007297 866110 snp T A A:20 T:0 CDS + 711/2487 237/828 synonymous_variant c.711T>A p.Ser237Ser M5005_RS04375 gyrA DNA gyrase subunit A A21-7.fasta NC_007297 869869 snp G T T:20 G:0 CDS + 105/369 35/122 missense_variant c.105G>T p.Leu35Phe M5005_RS04390 hypothetical protein A21-7.fasta NC_007297 887435 snp T G G:20 T:0 CDS - 525/696 175/231 missense_variant c.525A>C p.Lys175Asn M5005_RS04485 GntR family transcriptional regulator A21-7.fasta NC_007297 915720 snp G T T:20 G:0 CDS - 465/1578 155/525 synonymous_variant c.465C>A p.Gly155Gly M5005_RS04615 cls cardiolipin synthase A21-7.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase A21-7.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase A21-7.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU A21-7.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB A21-7.fasta NC_007297 957886 snp T C C:20 T:0 A21-7.fasta NC_007297 959346 snp C T T:20 C:0 A21-7.fasta NC_007297 983438 snp G C C:20 G:0 A21-7.fasta NC_007297 1010895 snp C T T:20 C:0 CDS - 94/357 32/118 missense_variant c.94G>A p.Asp32Asn M5005_RS05130 hypothetical protein A21-7.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA A21-7.fasta NC_007297 1062101 snp C G G:20 C:0 CDS - 645/1314 215/437 synonymous_variant c.645G>C p.Leu215Leu M5005_RS05390 obgE GTPase ObgE A21-7.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase A21-7.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase A21-7.fasta NC_007297 1119640 snp G T T:20 G:0 CDS + 853/1221 285/406 stop_gained c.853G>T p.Glu285* M5005_RS05650 DUF3114 domain-containing protein A21-7.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein A21-7.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein A21-7.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA A21-7.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator A21-7.fasta NC_007297 1231154 snp C T T:20 C:0 A21-7.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein A21-7.fasta NC_007297 1238124 snp G A A:20 G:0 A21-7.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein A21-7.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase A21-7.fasta NC_007297 1265144 snp C T T:20 C:0 CDS - 459/606 153/201 missense_variant c.459G>A p.Met153Ile M5005_RS06450 YesL family protein A21-7.fasta NC_007297 1284750 snp A G G:20 A:0 A21-7.fasta NC_007297 1294671 del CT C C:18 CT:0 A21-7.fasta NC_007297 1373004 snp C A A:20 C:0 CDS - 39/1452 13/483 synonymous_variant c.39G>T p.Leu13Leu M5005_RS06945 PTS galactitol transporter subunit IIC A21-7.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB A21-7.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein A21-7.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein A21-7.fasta NC_007297 1408362 snp C A A:20 C:0 CDS - 4/1533 2/510 stop_gained c.4G>T p.Glu2* M5005_RS07140 phage portal protein A21-7.fasta NC_007297 1421605 snp C A A:20 C:0 CDS - 52/387 18/128 stop_gained c.52G>T p.Glu18* M5005_RS07220 hypothetical protein A21-7.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase A21-7.fasta NC_007297 1448583 snp G A A:20 G:0 CDS - 150/972 50/323 synonymous_variant c.150C>T p.Val50Val M5005_RS07390 fabK enoyl-[acyl-carrier-protein] reductase FabK A21-7.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein A21-7.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein A21-7.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr A21-7.fasta NC_007297 1517349 ins A AT AT:20 A:0 CDS + 1006/1155 336/384 frameshift_variant c.1005_1006insT p.Ile336fs M5005_RS07700 mutY A/G-specific adenine glycosylase A21-7.fasta NC_007297 1535209 snp A G G:20 A:0 A21-7.fasta NC_007297 1547208 snp A G G:20 A:0 CDS - 409/780 137/259 synonymous_variant c.409T>C p.Leu137Leu M5005_RS07845 udp uridine phosphorylase A21-7.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta A21-7.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase A21-7.fasta NC_007297 1630160 del CT C C:19 CT:0 A21-7.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase A21-7.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic A21-7.fasta NC_007297 1681936 del TCTA T T:18 TCTA:0 CDS - 11/942 3/313 disruptive_inframe_deletion c.9_11delTAG p.Arg4del M5005_RS08470 sic complement-mediated lysis inhibitor Sic A21-7.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase A21-7.fasta NC_007297 1730397 snp C A A:20 C:0 CDS + 1095/1533 365/510 missense_variant c.1095C>A p.Asp365Glu M5005_RS08700 ahpF alkyl hydroperoxide reductase subunit F A21-7.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase A21-7.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase A21-7.fasta NC_007297 1752626 snp T A A:20 T:0 CDS - 1414/2025 472/674 missense_variant c.1414A>T p.Met472Leu M5005_RS08775 treP PTS system trehalose-specific EIIBC component A21-7.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha A21-7.fasta NC_007297 1818647 snp T C C:20 T:0 A21-7.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 A21-7.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein A21-7.fasta NC_007297 1831068 snp G T T:20 G:0 CDS + 1594/1620 532/539 missense_variant c.1594G>T p.Ala532Ser M5005_RS09145 ATP-binding cassette domain-containing protein A21-7.fasta NC_007297 1833156 snp C T T:20 C:0 CDS + 1980/2577 660/858 synonymous_variant c.1980C>T p.Thr660Thr M5005_RS09150 YfhO family protein ERR1359547.fasta NC_007297 3265 snp G A A:20 G:0 ERR1359547.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359547.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359547.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1359547.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359547.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359547.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359547.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359547.fasta NC_007297 214937 snp C T T:20 C:0 CDS + 108/360 36/119 synonymous_variant c.108C>T p.Gly36Gly M5005_RS01205 rnpA ribonuclease P protein component ERR1359547.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359547.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359547.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359547.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359547.fasta NC_007297 343279 del TA T T:19 TA:0 ERR1359547.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359547.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359547.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:16 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359547.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359547.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359547.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359547.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359547.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359547.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359547.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359547.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359547.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359547.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359547.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359547.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359547.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359547.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359547.fasta NC_007297 812565 snp C A A:20 C:0 CDS + 69/1236 23/411 synonymous_variant c.69C>A p.Leu23Leu M5005_RS04110 pbp3 D-alanyl-D-alanine carboxypeptidase PBP3 ERR1359547.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359547.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359547.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359547.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359547.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359547.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359547.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359547.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359547.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359547.fasta NC_007297 992831 snp C T T:20 C:0 CDS - 1938/3441 646/1146 missense_variant c.1938G>A p.Met646Ile M5005_RS05005 glucosaminidase domain-containing protein ERR1359547.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359547.fasta NC_007297 1047015 snp A G G:20 A:0 CDS - 174/1539 58/512 synonymous_variant c.174T>C p.Val58Val M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359547.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359547.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359547.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359547.fasta NC_007297 1145946 snp C A A:20 C:0 ERR1359547.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359547.fasta NC_007297 1170259 snp A C C:20 A:0 CDS - 42/930 14/309 missense_variant c.42T>G p.Phe14Leu M5005_RS05955 recombinase RecT ERR1359547.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359547.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359547.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359547.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359547.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359547.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359547.fasta NC_007297 1294096 snp T C C:20 T:0 CDS - 562/1326 188/441 missense_variant c.562A>G p.Thr188Ala M5005_RS06585 DEAD/DEAH box helicase ERR1359547.fasta NC_007297 1294671 del CT C C:19 CT:0 ERR1359547.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359547.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359547.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359547.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359547.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359547.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359547.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359547.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359547.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359547.fasta NC_007297 1602743 del AT A A:19 AT:0 ERR1359547.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359547.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359547.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359547.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359547.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359547.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359547.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359547.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359547.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169986.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169986.fasta NC_007297 47262 snp G T T:20 G:0 CDS + 145/1266 49/421 missense_variant c.145G>T p.Val49Phe M5005_RS00300 purD phosphoribosylamine--glycine ligase SRR21169986.fasta NC_007297 73847 ins G GA GA:19 G:0 SRR21169986.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169986.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169986.fasta NC_007297 192592 snp T C C:20 T:0 CDS + 264/1350 88/449 synonymous_variant c.264T>C p.Gly88Gly M5005_RS01105 glucose-6-phosphate isomerase SRR21169986.fasta NC_007297 207432 del GT G G:19 GT:0 SRR21169986.fasta NC_007297 225387 snp G C C:20 G:0 SRR21169986.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169986.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169986.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169986.fasta NC_007297 362478 snp A T T:20 A:0 CDS - 287/699 96/232 missense_variant c.287T>A p.Leu96His M5005_RS01940 spej streptococcal pyrogenic exotoxin SpeJ SRR21169986.fasta NC_007297 410192 snp A G G:20 A:0 CDS - 907/927 303/308 missense_variant c.907T>C p.Tyr303His M5005_RS02215 DUF979 domain-containing protein SRR21169986.fasta NC_007297 411718 snp C T T:20 C:0 CDS - 64/684 22/227 missense_variant c.64G>A p.Ala22Thr M5005_RS02220 DUF969 domain-containing protein SRR21169986.fasta NC_007297 447852 snp C T T:20 C:0 CDS - 1143/1659 381/552 synonymous_variant c.1143G>A p.Lys381Lys M5005_RS10025 DUF2326 domain-containing protein SRR21169986.fasta NC_007297 487996 snp A C C:20 A:0 CDS - 1410/1800 470/599 missense_variant c.1410T>G p.Ile470Met M5005_RS02615 pepF oligoendopeptidase F SRR21169986.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169986.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169986.fasta NC_007297 575496 del AATCTTGTTGCCTTTTTGTT A A:16 AATCTTGTTGCCTTTTTGTT:0 SRR21169986.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169986.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169986.fasta NC_007297 605409 snp C T T:20 C:0 CDS + 506/855 169/284 missense_variant c.506C>T p.Ala169Val M5005_RS03095 rfbD dTDP-4-dehydrorhamnose reductase SRR21169986.fasta NC_007297 652108 snp A T T:20 A:0 CDS + 1179/1221 393/406 missense_variant c.1179A>T p.Lys393Asn M5005_RS03310 ABC transporter permease SRR21169986.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169986.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169986.fasta NC_007297 772954 del GT G G:20 GT:0 SRR21169986.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169986.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169986.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169986.fasta NC_007297 804418 del AGTC A A:20 AGTC:0 CDS + 1108/1493 370/496 conservative_inframe_deletion c.1108_1110delGTC p.Val370del M5005_RS10060 SAG1250 family conjugative relaxase SRR21169986.fasta NC_007297 805998 snp A G G:20 A:0 CDS + 365/1347 122/448 missense_variant c.365A>G p.Asn122Ser M5005_RS04050 sensor histidine kinase SRR21169986.fasta NC_007297 809902 snp T C C:20 T:0 CDS + 374/723 125/240 missense_variant c.374T>C p.Ile125Thr M5005_RS04075 lantibiotic immunity ABC transporter MutG family permease subunit SRR21169986.fasta NC_007297 845251 snp C T T:20 C:0 SRR21169986.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169986.fasta NC_007297 861978 snp G A A:20 G:0 CDS + 1250/1728 417/575 missense_variant c.1250G>A p.Gly417Asp M5005_RS04360 ABC transporter ATP-binding protein SRR21169986.fasta NC_007297 888321 snp C T T:20 C:0 CDS - 1200/1404 400/467 missense_variant c.1200G>A p.Met400Ile M5005_RS04490 CitMHS family transporter SRR21169986.fasta NC_007297 900467 snp G C C:20 G:0 SRR21169986.fasta NC_007297 918365 snp C T T:20 C:0 CDS - 722/1020 241/339 missense_variant c.722G>A p.Arg241His M5005_RS04625 lipoate--protein ligase SRR21169986.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169986.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169986.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169986.fasta NC_007297 989782 snp C T T:20 C:0 CDS - 1542/1863 514/620 stop_gained c.1542G>A p.Trp514* M5005_RS05000 DUF859 family phage minor structural protein SRR21169986.fasta NC_007297 1007579 snp T C C:12 T:0 CDS - 418/435 140/144 missense_variant c.418A>G p.Lys140Glu M5005_RS05095 ArpU family phage packaging/lysis transcriptional regulator SRR21169986.fasta NC_007297 1007584 snp G A A:12 G:0 CDS - 413/435 138/144 missense_variant c.413C>T p.Ala138Val M5005_RS05095 ArpU family phage packaging/lysis transcriptional regulator SRR21169986.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169986.fasta NC_007297 1064592 snp C T T:17 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169986.fasta NC_007297 1112093 snp G A A:20 G:0 CDS - 469/1197 157/398 synonymous_variant c.469C>T p.Leu157Leu M5005_RS05620 L-lactate MFS transporter SRR21169986.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169986.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169986.fasta NC_007297 1149770 snp G A A:14 G:0 CDS - 376/618 126/205 missense_variant c.376C>T p.Pro126Ser M5005_RS05810 DUF1366 domain-containing protein SRR21169986.fasta NC_007297 1198715 snp G T T:20 G:0 CDS - 2522/2802 841/933 missense_variant c.2522C>A p.Thr841Asn M5005_RS06140 ileS isoleucine--tRNA ligase SRR21169986.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169986.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169986.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169986.fasta NC_007297 1247749 del AT A A:20 AT:0 CDS - 480/2409 160/802 frameshift_variant c.480delA p.Lys160fs M5005_RS06370 CRISPR-associated helicase/endonuclease Cas3 SRR21169986.fasta NC_007297 1346401 snp G A A:20 G:0 CDS - 553/1986 185/661 synonymous_variant c.553C>T p.Leu185Leu M5005_RS06825 tkt transketolase SRR21169986.fasta NC_007297 1350795 del GT G G:20 GT:0 SRR21169986.fasta NC_007297 1372206 snp G A A:20 G:0 CDS - 837/1452 279/483 synonymous_variant c.837C>T p.Cys279Cys M5005_RS06945 PTS galactitol transporter subunit IIC SRR21169986.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169986.fasta NC_007297 1401110 snp C T T:20 C:0 CDS - 180/456 60/151 synonymous_variant c.180G>A p.Val60Val M5005_RS07085 tail assembly chaperone SRR21169986.fasta NC_007297 1435937 snp T C C:20 T:0 CDS + 252/993 84/330 synonymous_variant c.252T>C p.Asn84Asn M5005_RS07325 PTS sugar transporter subunit IIB SRR21169986.fasta NC_007297 1452237 snp T G G:20 T:0 CDS - 637/1158 213/385 missense_variant c.637A>C p.Thr213Pro M5005_RS07415 dnaJ molecular chaperone DnaJ SRR21169986.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169986.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169986.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169986.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169986.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169986.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169986.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169986.fasta NC_007297 1699554 snp T C C:20 T:0 CDS + 433/843 145/280 missense_variant c.433T>C p.Tyr145His M5005_RS08550 ropB quorum-sensing system transcriptional regulator RopB/Rgg1 SRR21169986.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169986.fasta NC_007297 1745157 snp T C C:20 T:0 CDS - 650/3075 217/1024 missense_variant c.650A>G p.Gln217Arg M5005_RS08750 AAA family ATPase SRR21169986.fasta NC_007297 1747348 snp C T T:20 C:0 CDS + 338/1041 113/346 missense_variant c.338C>T p.Ala113Val M5005_RS08760 tsf translation elongation factor Ts SRR21169986.fasta NC_007297 1749973 snp G A A:20 G:0 CDS - 140/1896 47/631 missense_variant c.140C>T p.Thr47Ile M5005_RS08765 pepO endopeptidase PepO SRR21169986.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169986.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:9 A:0 ERR1359337.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359337.fasta NC_007297 77927 snp T C C:20 T:0 CDS + 218/939 73/312 missense_variant c.218T>C p.Val73Ala M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1359337.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359337.fasta NC_007297 126967 snp G T T:20 G:0 ERR1359337.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359337.fasta NC_007297 216390 snp C T T:20 C:0 CDS + 397/915 133/304 missense_variant c.397C>T p.Pro133Ser M5005_RS01215 jag RNA-binding cell elongation regulator Jag/EloR ERR1359337.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359337.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359337.fasta NC_007297 293930 snp A G G:20 A:0 CDS + 777/1502 259/499 missense_variant c.777A>G p.Ile259Met M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359337.fasta NC_007297 308697 snp G A A:20 G:0 ERR1359337.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359337.fasta NC_007297 530171 snp A C C:20 A:0 CDS + 645/978 215/325 synonymous_variant c.645A>C p.Ala215Ala M5005_RS02785 YvcK family protein ERR1359337.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359337.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359337.fasta NC_007297 572766 snp C T T:20 C:0 CDS + 466/1959 156/652 missense_variant c.466C>T p.Pro156Ser M5005_RS02950 ligA NAD-dependent DNA ligase LigA ERR1359337.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359337.fasta NC_007297 597479 snp C T T:20 C:0 CDS + 1742/3633 581/1210 missense_variant c.1742C>T p.Ser581Phe M5005_RS03060 addA helicase-exonuclease AddAB subunit AddA ERR1359337.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359337.fasta NC_007297 616062 snp T C C:20 T:0 CDS + 675/696 225/231 synonymous_variant c.675T>C p.Val225Val M5005_RS03135 glycosyltransferase family 2 protein ERR1359337.fasta NC_007297 676225 snp G A A:20 G:0 CDS + 1151/1209 384/402 missense_variant c.1151G>A p.Arg384His M5005_RS03430 CCA tRNA nucleotidyltransferase ERR1359337.fasta NC_007297 680825 snp A G G:20 A:0 CDS - 729/2013 243/670 synonymous_variant c.729T>C p.His243His M5005_RS03450 surface-anchored 5'-nucleotidase ERR1359337.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359337.fasta NC_007297 711679 snp G A A:20 G:0 CDS + 379/1269 127/422 missense_variant c.379G>A p.Ala127Thr M5005_RS03605 dihydroorotase ERR1359337.fasta NC_007297 712809 snp A G G:20 A:0 CDS - 460/642 154/213 synonymous_variant c.460T>C p.Leu154Leu M5005_RS03610 plsY glycerol-3-phosphate 1-O-acyltransferase PlsY ERR1359337.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359337.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359337.fasta NC_007297 782255 snp A G G:19 A:0 ERR1359337.fasta NC_007297 782340 ins G GAACAAAACAA GAACAAAACAA:16 G:0 ERR1359337.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359337.fasta NC_007297 818392 snp C T T:20 C:0 CDS + 188/501 63/166 missense_variant c.188C>T p.Thr63Ile M5005_RS04140 folK 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase ERR1359337.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359337.fasta NC_007297 894761 snp T G G:20 T:0 CDS + 22/579 8/192 missense_variant c.22T>G p.Ser8Ala M5005_RS04530 citX citrate lyase holo-[acyl-carrier protein] synthase ERR1359337.fasta NC_007297 906411 snp G T T:20 G:0 CDS + 510/1563 170/520 missense_variant c.510G>T p.Glu170Asp M5005_RS04580 guaA glutamine-hydrolyzing GMP synthase ERR1359337.fasta NC_007297 931854 snp G A A:20 G:0 CDS - 67/1533 23/510 missense_variant c.67C>T p.His23Tyr M5005_RS04690 ABC transporter ATP-binding protein ERR1359337.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359337.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359337.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359337.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359337.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359337.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359337.fasta NC_007297 1111433 snp G T T:20 G:0 CDS - 1129/1197 377/398 missense_variant c.1129C>A p.Leu377Ile M5005_RS05620 L-lactate MFS transporter ERR1359337.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359337.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359337.fasta NC_007297 1206356 snp T C C:20 T:0 CDS - 1021/1365 341/454 missense_variant c.1021A>G p.Ile341Val M5005_RS06175 ftsA cell division protein FtsA ERR1359337.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359337.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359337.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359337.fasta NC_007297 1350795 del GT G G:19 GT:0 ERR1359337.fasta NC_007297 1377777 del AT A A:19 AT:0 CDS - 155/435 52/144 frameshift_variant c.155delA p.Asn52fs M5005_RS06975 CopY/TcrY family copper transport repressor ERR1359337.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359337.fasta NC_007297 1457442 snp T C C:20 T:0 CDS - 33/570 11/189 synonymous_variant c.33A>G p.Leu11Leu M5005_RS07435 glycoside hydrolase family 73 protein ERR1359337.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359337.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359337.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359337.fasta NC_007297 1541538 snp G A A:20 G:0 CDS - 591/738 197/245 synonymous_variant c.591C>T p.Pro197Pro M5005_RS07815 MerR family transcriptional regulator ERR1359337.fasta NC_007297 1550741 snp A T T:20 A:0 CDS - 678/699 226/232 missense_variant c.678T>A p.Ser226Arg M5005_RS07870 tsaB tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB ERR1359337.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359337.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359337.fasta NC_007297 1627333 snp C A A:20 C:0 CDS - 2578/4398 860/1465 missense_variant c.2578G>T p.Asp860Tyr M5005_RS08260 PolC-type DNA polymerase III ERR1359337.fasta NC_007297 1630160 ins C CT CT:18 C:0 ERR1359337.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359337.fasta NC_007297 1650590 snp A G G:20 A:0 CDS + 442/483 148/160 missense_variant c.442A>G p.Arg148Gly M5005_RS08335 nrdI class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI ERR1359337.fasta NC_007297 1681273 del TCCATCAAAG T T:12 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359337.fasta NC_007297 1683452 snp G A A:20 G:0 CDS - 139/1455 47/484 missense_variant c.139C>T p.Pro47Ser M5005_RS08475 emm M protein ERR1359337.fasta NC_007297 1687735 snp G A A:20 G:0 CDS - 237/1602 79/533 synonymous_variant c.237C>T p.His79His M5005_RS08490 CHAP domain-containing protein ERR1359337.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359337.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359337.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359613.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359613.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359613.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1359613.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359613.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359613.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359613.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359613.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359613.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359613.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359613.fasta NC_007297 313949 snp T A A:20 T:0 CDS + 14/987 5/328 missense_variant c.14T>A p.Ile5Asn M5005_RS01690 nucleoside-triphosphate diphosphatase ERR1359613.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359613.fasta NC_007297 343279 del TA T T:18 TA:0 ERR1359613.fasta NC_007297 500311 snp A G G:20 A:0 CDS - 1158/1302 386/433 synonymous_variant c.1158T>C p.Ile386Ile M5005_RS02660 HD domain-containing protein ERR1359613.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359613.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359613.fasta NC_007297 543558 snp A G G:20 A:0 CDS + 824/1953 275/650 missense_variant c.824A>G p.Glu275Gly M5005_RS02855 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B ERR1359613.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359613.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359613.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359613.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359613.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359613.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359613.fasta NC_007297 615370 snp T C C:20 T:0 ERR1359613.fasta NC_007297 618414 snp G A A:20 G:0 CDS + 729/1497 243/498 synonymous_variant c.729G>A p.Leu243Leu M5005_RS03150 DUF2142 domain-containing protein ERR1359613.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359613.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359613.fasta NC_007297 684406 snp C T T:20 C:0 ERR1359613.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359613.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359613.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359613.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359613.fasta NC_007297 782255 snp A G G:19 A:0 ERR1359613.fasta NC_007297 782340 ins G GAACAAAACAA GAACAAAACAA:15 G:0 ERR1359613.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359613.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359613.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359613.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359613.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359613.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359613.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359613.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359613.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359613.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359613.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359613.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359613.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359613.fasta NC_007297 1067738 snp G T T:20 G:0 CDS + 249/1485 83/494 synonymous_variant c.249G>T p.Ala83Ala M5005_RS05420 DUF1846 domain-containing protein ERR1359613.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359613.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359613.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359613.fasta NC_007297 1162815 snp C T T:20 C:0 CDS - 665/1494 222/497 missense_variant c.665G>A p.Gly222Glu M5005_RS05905 hypothetical protein ERR1359613.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359613.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359613.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359613.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359613.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359613.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359613.fasta NC_007297 1294671 del CT C C:19 CT:0 ERR1359613.fasta NC_007297 1336814 snp T C C:20 T:0 CDS - 1347/2256 449/751 synonymous_variant c.1347A>G p.Gln449Gln M5005_RS06780 pbp2X penicillin-binding protein PBP2X ERR1359613.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359613.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359613.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359613.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359613.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359613.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359613.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359613.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359613.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359613.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359613.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359613.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359613.fasta NC_007297 1681273 del TCCATCAAAG T T:12 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359613.fasta NC_007297 1681826 snp T C C:20 T:0 CDS - 122/942 41/313 missense_variant c.122A>G p.Asp41Gly M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359613.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359613.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359613.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359613.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359613.fasta NC_007297 1818670 snp G A A:20 G:0 ERR1359613.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359613.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein ERR1359402.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359402.fasta NC_007297 39113 snp G A A:20 G:0 CDS + 2274/3726 758/1241 synonymous_variant c.2274G>A p.Gln758Gln M5005_RS00270 phosphoribosylformylglycinamidine synthase ERR1359402.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359402.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359402.fasta NC_007297 227151 snp C T T:20 C:0 CDS + 218/873 73/290 missense_variant c.218C>T p.Ala73Val M5005_RS01275 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA ERR1359402.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359402.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359402.fasta NC_007297 333452 snp C T T:20 C:0 CDS + 680/1635 227/544 missense_variant c.680C>T p.Ala227Val M5005_RS01800 putative polysaccharide biosynthesis protein ERR1359402.fasta NC_007297 337763 snp C T T:20 C:0 CDS + 77/876 26/291 missense_variant c.77C>T p.Ala26Val M5005_RS01825 DNA polymerase III subunit delta' ERR1359402.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359402.fasta NC_007297 411197 snp A C C:20 A:0 CDS - 585/684 195/227 synonymous_variant c.585T>G p.Ser195Ser M5005_RS02220 DUF969 domain-containing protein ERR1359402.fasta NC_007297 537603 snp C T T:20 C:0 CDS - 540/942 180/313 synonymous_variant c.540G>A p.Glu180Glu M5005_RS02820 DHH family phosphoesterase ERR1359402.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:17 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359402.fasta NC_007297 548664 snp G T T:20 G:0 CDS + 1069/1308 357/435 missense_variant c.1069G>T p.Ala357Ser M5005_RS02870 eno surface-displayed alpha-enolase ERR1359402.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359402.fasta NC_007297 568213 snp C T T:20 C:0 ERR1359402.fasta NC_007297 577230 snp C T T:20 C:0 CDS + 83/537 28/178 missense_variant c.83C>T p.Ala28Val M5005_RS02975 F0F1 ATP synthase subunit delta ERR1359402.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359402.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359402.fasta NC_007297 622105 snp C T T:20 C:0 CDS + 354/681 118/226 synonymous_variant c.354C>T p.Arg118Arg M5005_RS03170 cmk (d)CMP kinase ERR1359402.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359402.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359402.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359402.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359402.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359402.fasta NC_007297 825917 snp C T T:20 C:0 ERR1359402.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359402.fasta NC_007297 874044 snp C A A:20 C:0 CDS + 690/792 230/263 synonymous_variant c.690C>A p.Thr230Thr M5005_RS04415 ribonuclease HII ERR1359402.fasta NC_007297 876560 snp T C C:20 T:0 CDS + 1407/2130 469/709 synonymous_variant c.1407T>C p.Phe469Phe M5005_RS04425 topA type I DNA topoisomerase ERR1359402.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359402.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359402.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359402.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359402.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359402.fasta NC_007297 1064592 snp C T T:15 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359402.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359402.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359402.fasta NC_007297 1167656 snp G T T:11 G:0 CDS - 229/513 77/170 missense_variant c.229C>A p.Pro77Thr M5005_RS05940 hypothetical protein ERR1359402.fasta NC_007297 1167666 complex CGAG TGAA TGAA:12 CGAG:0 CDS - 219/513 72/170 synonymous_variant c.216_219delCTCGinsTTCA p.74 M5005_RS05940 hypothetical protein ERR1359402.fasta NC_007297 1167813 snp A G G:20 A:0 CDS - 72/513 24/170 synonymous_variant c.72T>C p.Asp24Asp M5005_RS05940 hypothetical protein ERR1359402.fasta NC_007297 1167837 snp C A A:20 C:0 CDS - 48/513 16/170 synonymous_variant c.48G>T p.Gly16Gly M5005_RS05940 hypothetical protein ERR1359402.fasta NC_007297 1168113 snp C T T:20 C:0 CDS - 110/342 37/113 missense_variant c.110G>A p.Gly37Asp M5005_RS05945 hypothetical protein ERR1359402.fasta NC_007297 1168232 del CT C C:14 CT:0 ERR1359402.fasta NC_007297 1171917 snp T C C:20 T:0 CDS - 111/240 37/79 synonymous_variant c.111A>G p.Arg37Arg M5005_RS10085 hypothetical protein ERR1359402.fasta NC_007297 1207959 snp T C C:20 T:0 CDS - 778/1149 260/382 missense_variant c.778A>G p.Lys260Glu M5005_RS06180 cell division protein FtsQ/DivIB ERR1359402.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359402.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359402.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359402.fasta NC_007297 1245544 ins A AT AT:18 A:0 CDS - 144/729 48/242 frameshift_variant c.144_145insA p.Tyr49fs M5005_RS06365 cas5c type I-C CRISPR-associated protein Cas5c ERR1359402.fasta NC_007297 1251911 snp A C C:20 A:0 ERR1359402.fasta NC_007297 1282689 snp T C C:20 T:0 CDS - 183/1356 61/451 synonymous_variant c.183A>G p.Val61Val M5005_RS06505 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD ERR1359402.fasta NC_007297 1350795 del GT G G:18 GT:0 ERR1359402.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359402.fasta NC_007297 1396768 snp G A A:20 G:0 CDS - 3744/4383 1248/1460 synonymous_variant c.3744C>T p.Ala1248Ala M5005_RS07075 tape measure protein ERR1359402.fasta NC_007297 1439778 snp T C C:20 T:0 CDS + 410/1278 137/425 missense_variant c.410T>C p.Val137Ala M5005_RS07345 serS serine--tRNA ligase ERR1359402.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359402.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359402.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359402.fasta NC_007297 1488585 snp A G G:20 A:0 CDS - 92/3828 31/1275 missense_variant c.92T>C p.Val31Ala M5005_RS07570 shr heme-binding protein Shr ERR1359402.fasta NC_007297 1534934 snp T C C:20 T:0 CDS - 237/849 79/282 synonymous_variant c.237A>G p.Ser79Ser M5005_RS07780 gla aquaglyceroporin Gla ERR1359402.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359402.fasta NC_007297 1592453 del AT A A:19 AT:0 CDS - 38/1908 13/635 frameshift_variant c.38delA p.Asn13fs M5005_RS08065 FtsX-like permease family protein ERR1359402.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359402.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359402.fasta NC_007297 1651100 snp C A A:20 C:0 CDS - 744/819 248/272 missense_variant c.744G>T p.Lys248Asn M5005_RS08340 endonuclease/exonuclease/phosphatase family protein ERR1359402.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359402.fasta NC_007297 1695084 del AT A A:19 AT:0 ERR1359402.fasta NC_007297 1728482 ins G GT GT:19 G:0 ERR1359402.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359402.fasta NC_007297 1739334 snp G T T:20 G:0 CDS + 701/1344 234/447 missense_variant c.701G>T p.Arg234Leu M5005_RS08735 APC family permease ERR1359402.fasta NC_007297 1755434 del CT C C:19 CT:0 CDS - 146/339 49/112 frameshift_variant c.146delA p.Lys49fs M5005_RS08785 winged helix-turn-helix transcriptional regulator ERR1359402.fasta NC_007297 1778188 snp G A A:20 G:0 CDS + 1429/1692 477/563 missense_variant c.1429G>A p.Ala477Thr M5005_RS08890 argS arginine--tRNA ligase ERR1359402.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359402.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359407.fasta NC_007297 3265 snp G A A:20 G:0 ERR1359407.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359407.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359407.fasta NC_007297 78299 snp T C C:20 T:0 CDS + 590/939 197/312 missense_variant c.590T>C p.Met197Thr M5005_RS00495 DNA-directed RNA polymerase subunit alpha ERR1359407.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359407.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359407.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359407.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359407.fasta NC_007297 214937 snp C T T:20 C:0 CDS + 108/360 36/119 synonymous_variant c.108C>T p.Gly36Gly M5005_RS01205 rnpA ribonuclease P protein component ERR1359407.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359407.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359407.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359407.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359407.fasta NC_007297 343279 del TA T T:18 TA:0 ERR1359407.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359407.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359407.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359407.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359407.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359407.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359407.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359407.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359407.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359407.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359407.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359407.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359407.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359407.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359407.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359407.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359407.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359407.fasta NC_007297 812565 snp C A A:20 C:0 CDS + 69/1236 23/411 synonymous_variant c.69C>A p.Leu23Leu M5005_RS04110 pbp3 D-alanyl-D-alanine carboxypeptidase PBP3 ERR1359407.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359407.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359407.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359407.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359407.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359407.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359407.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359407.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359407.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359407.fasta NC_007297 992831 snp C T T:20 C:0 CDS - 1938/3441 646/1146 missense_variant c.1938G>A p.Met646Ile M5005_RS05005 glucosaminidase domain-containing protein ERR1359407.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359407.fasta NC_007297 1047015 snp A G G:20 A:0 CDS - 174/1539 58/512 synonymous_variant c.174T>C p.Val58Val M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359407.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359407.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359407.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359407.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359407.fasta NC_007297 1170259 snp A C C:20 A:0 CDS - 42/930 14/309 missense_variant c.42T>G p.Phe14Leu M5005_RS05955 recombinase RecT ERR1359407.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359407.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359407.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359407.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359407.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359407.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359407.fasta NC_007297 1294096 snp T C C:20 T:0 CDS - 562/1326 188/441 missense_variant c.562A>G p.Thr188Ala M5005_RS06585 DEAD/DEAH box helicase ERR1359407.fasta NC_007297 1294671 del CT C C:19 CT:0 ERR1359407.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359407.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359407.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359407.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359407.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359407.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359407.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359407.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359407.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359407.fasta NC_007297 1602743 del AT A A:19 AT:0 ERR1359407.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359407.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359407.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359407.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359407.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359407.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359407.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359407.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359407.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359407.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein ERR1359420.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359420.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359420.fasta NC_007297 90441 snp C T T:20 C:0 CDS - 1063/1257 355/418 missense_variant c.1063G>A p.Val355Ile M5005_RS00620 tyrS tyrosine--tRNA ligase ERR1359420.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359420.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359420.fasta NC_007297 116162 complex AC CA CA:19 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359420.fasta NC_007297 118706 snp C A A:20 C:0 CDS + 1328/2274 443/757 missense_variant c.1328C>A p.Thr443Lys M5005_RS00745 cpa FCT-2 pilus tip adhesin ERR1359420.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359420.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359420.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359420.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359420.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359420.fasta NC_007297 343279 del TA T T:18 TA:0 ERR1359420.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359420.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359420.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359420.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359420.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359420.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359420.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359420.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359420.fasta NC_007297 615468 snp C T T:20 C:0 CDS + 81/696 27/231 synonymous_variant c.81C>T p.Ala27Ala M5005_RS03135 glycosyltransferase family 2 protein ERR1359420.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359420.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359420.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359420.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359420.fasta NC_007297 759711 snp C T T:20 C:0 CDS - 2272/2418 758/805 missense_variant c.2272G>A p.Asp758Asn M5005_RS03830 hylA hyaluronidase ERR1359420.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359420.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359420.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359420.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359420.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359420.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359420.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359420.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359420.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359420.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359420.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359420.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359420.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359420.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359420.fasta NC_007297 1020296 snp G A A:20 G:0 CDS + 697/894 233/297 missense_variant c.697G>A p.Gly233Ser M5005_RS05215 P63C domain-containing protein ERR1359420.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359420.fasta NC_007297 1052923 snp T C C:20 T:0 CDS - 83/153 28/50 missense_variant c.83A>G p.Tyr28Cys M5005_RS09920 hypothetical protein ERR1359420.fasta NC_007297 1064592 snp C T T:10 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359420.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359420.fasta NC_007297 1094354 snp C T T:20 C:0 CDS - 1126/1428 376/475 missense_variant c.1126G>A p.Glu376Lys M5005_RS05535 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase ERR1359420.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359420.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359420.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359420.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359420.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359420.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359420.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359420.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359420.fasta NC_007297 1294671 del CT C C:19 CT:0 ERR1359420.fasta NC_007297 1349210 snp G A A:20 G:0 CDS - 231/1500 77/499 synonymous_variant c.231C>T p.Gly77Gly M5005_RS06835 helix-turn-helix domain-containing protein ERR1359420.fasta NC_007297 1372801 snp A G G:20 A:0 CDS - 242/1452 81/483 missense_variant c.242T>C p.Ile81Thr M5005_RS06945 PTS galactitol transporter subunit IIC ERR1359420.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359420.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359420.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359420.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359420.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359420.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359420.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359420.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359420.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359420.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359420.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359420.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359420.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359420.fasta NC_007297 1681659 del CATCTTCAGGCCA C C:16 CATCTTCAGGCCA:0 CDS - 288/942 93/313 conservative_inframe_deletion c.277_288delTGGCCTGAAGAT p.Trp93_Asp96del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359420.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359420.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359420.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359420.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359420.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359420.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein ERR1359632.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase ERR1359632.fasta NC_007297 36169 snp C A A:20 C:0 CDS + 158/705 53/234 stop_gained c.158C>A p.Ser53* M5005_RS00265 purC phosphoribosylaminoimidazolesuccinocarboxamide synthase ERR1359632.fasta NC_007297 76208 del AAAG A A:20 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase ERR1359632.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein ERR1359632.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA ERR1359632.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA ERR1359632.fasta NC_007297 167489 snp C T T:20 C:0 ERR1359632.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD ERR1359632.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein ERR1359632.fasta NC_007297 293229 ins C CT CT:20 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS ERR1359632.fasta NC_007297 319871 snp C T T:20 C:0 regulatory + intragenic_variant n.319871C>T ERR1359632.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' ERR1359632.fasta NC_007297 343279 del TA T T:18 TA:0 ERR1359632.fasta NC_007297 365768 snp A G G:20 A:0 CDS + 779/960 260/319 missense_variant c.779A>G p.Gln260Arg M5005_RS01960 Gfo/Idh/MocA family protein ERR1359632.fasta NC_007297 480872 snp G A A:20 G:0 CDS - 621/1494 207/497 synonymous_variant c.621C>T p.Asn207Asn M5005_RS02570 lysS lysine--tRNA ligase ERR1359632.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase ERR1359632.fasta NC_007297 528360 snp A T T:20 A:0 ERR1359632.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase ERR1359632.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S ERR1359632.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase ERR1359632.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B ERR1359632.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359632.fasta NC_007297 604130 snp G A A:20 G:0 CDS + 1048/1110 350/369 missense_variant c.1048G>A p.Ala350Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD ERR1359632.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein ERR1359632.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase ERR1359632.fasta NC_007297 639294 ins C CA CA:20 C:0 CDS + 536/915 179/304 frameshift_variant c.535dupA p.Thr179fs M5005_RS03260 LysR family transcriptional regulator ERR1359632.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD ERR1359632.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase ERR1359632.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ ERR1359632.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase ERR1359632.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase ERR1359632.fasta NC_007297 782255 snp A G G:20 A:0 ERR1359632.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein ERR1359632.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein ERR1359632.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase ERR1359632.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein ERR1359632.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase ERR1359632.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase ERR1359632.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU ERR1359632.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB ERR1359632.fasta NC_007297 957886 snp T C C:20 T:0 ERR1359632.fasta NC_007297 959346 snp C T T:20 C:0 ERR1359632.fasta NC_007297 983438 snp G C C:20 G:0 ERR1359632.fasta NC_007297 985465 snp T C C:20 T:0 CDS - 439/660 147/219 missense_variant c.439A>G p.Ile147Val M5005_RS04955 hypothetical protein ERR1359632.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA ERR1359632.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase ERR1359632.fasta NC_007297 1070444 snp G A A:20 G:0 CDS - 1296/1356 432/451 synonymous_variant c.1296C>T p.Pro432Pro M5005_RS05435 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD ERR1359632.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase ERR1359632.fasta NC_007297 1091710 snp C T T:20 C:0 CDS + 224/1086 75/361 missense_variant c.224C>T p.Thr75Ile M5005_RS05525 DEAD/DEAH box helicase ERR1359632.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein ERR1359632.fasta NC_007297 1140419 snp T C C:20 T:0 ERR1359632.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein ERR1359632.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA ERR1359632.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator ERR1359632.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein ERR1359632.fasta NC_007297 1238124 snp G A A:20 G:0 ERR1359632.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein ERR1359632.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase ERR1359632.fasta NC_007297 1294671 del CT C C:20 CT:0 ERR1359632.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB ERR1359632.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein ERR1359632.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein ERR1359632.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase ERR1359632.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein ERR1359632.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein ERR1359632.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr ERR1359632.fasta NC_007297 1496647 snp T C C:20 T:0 CDS - 608/954 203/317 missense_variant c.608A>G p.Asn203Ser M5005_RS07610 manA mannose-6-phosphate isomerase, class I ERR1359632.fasta NC_007297 1508024 snp G T T:20 G:0 CDS - 361/462 121/153 missense_variant c.361C>A p.Arg121Ser M5005_RS07655 deoxycytidylate deaminase ERR1359632.fasta NC_007297 1516396 snp G A A:20 G:0 CDS + 52/1155 18/384 missense_variant c.52G>A p.Ala18Thr M5005_RS07700 mutY A/G-specific adenine glycosylase ERR1359632.fasta NC_007297 1535209 snp A G G:20 A:0 ERR1359632.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta ERR1359632.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase ERR1359632.fasta NC_007297 1626457 snp G A A:20 G:0 CDS - 3454/4398 1152/1465 missense_variant c.3454C>T p.Pro1152Ser M5005_RS08260 PolC-type DNA polymerase III ERR1359632.fasta NC_007297 1630160 del CT C C:19 CT:0 ERR1359632.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase ERR1359632.fasta NC_007297 1681273 del TCCATCAAAG T T:17 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic ERR1359632.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase ERR1359632.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase ERR1359632.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase ERR1359632.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha ERR1359632.fasta NC_007297 1818699 snp C T T:20 C:0 ERR1359632.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 ERR1359632.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein SRR21169799.fasta NC_007297 33566 snp G A A:20 G:0 CDS + 954/963 318/320 missense_variant c.954G>A p.Met318Ile M5005_RS00245 ribose-phosphate diphosphokinase SRR21169799.fasta NC_007297 64197 snp T C C:20 T:0 SRR21169799.fasta NC_007297 76208 del AAAG A A:19 AAAG:0 CDS + 453/639 151/212 disruptive_inframe_deletion c.453_455delAGA p.Glu151del M5005_RS00475 adenylate kinase SRR21169799.fasta NC_007297 111953 snp G A A:20 G:0 CDS + 408/627 136/208 synonymous_variant c.408G>A p.Ala136Ala M5005_RS00715 ytpR YtpR family tRNA-binding protein SRR21169799.fasta NC_007297 115646 snp C T T:20 C:0 CDS - 1471/1494 491/497 missense_variant c.1471G>A p.Asp491Asn M5005_RS00740 rofA transcriptional regulator RofA SRR21169799.fasta NC_007297 116162 complex AC CA CA:18 AC:0 CDS - 955/1494 318/497 missense_variant c.954_955delGTinsTG p.MetPhe318IleVal M5005_RS00740 rofA transcriptional regulator RofA SRR21169799.fasta NC_007297 126007 snp C T T:20 C:0 CDS - 661/666 221/221 missense_variant c.661G>A p.Glu221Lys M5005_RS00790 hypothetical protein SRR21169799.fasta NC_007297 167489 snp C T T:20 C:0 SRR21169799.fasta NC_007297 250832 snp T C C:20 T:0 CDS + 744/1263 248/420 synonymous_variant c.744T>C p.Asn248Asn M5005_RS01370 sufD Fe-S cluster assembly protein SufD SRR21169799.fasta NC_007297 291797 snp C T T:20 C:0 CDS + 136/534 46/177 missense_variant c.136C>T p.Arg46Cys M5005_RS01575 YceD family protein SRR21169799.fasta NC_007297 293229 ins C CT CT:19 C:0 CDS + 83/1502 28/499 frameshift_variant c.82dupT p.Ser28fs M5005_RS01585 covS two-component system sensor histidine kinase CovS SRR21169799.fasta NC_007297 338210 snp A G G:20 A:0 CDS + 524/876 175/291 missense_variant c.524A>G p.Glu175Gly M5005_RS01825 DNA polymerase III subunit delta' SRR21169799.fasta NC_007297 343279 del TA T T:19 TA:0 SRR21169799.fasta NC_007297 458987 del AC A A:20 AC:0 SRR21169799.fasta NC_007297 513254 snp G T T:20 G:0 CDS + 346/642 116/213 missense_variant c.346G>T p.Ala116Ser M5005_RS02715 RpiB/LacA/LacB family sugar-phosphate isomerase SRR21169799.fasta NC_007297 516326 del CA C C:18 CA:0 SRR21169799.fasta NC_007297 528231 snp A G G:20 A:0 SRR21169799.fasta NC_007297 528360 snp A T T:20 A:0 SRR21169799.fasta NC_007297 547754 complex CGTGTCA TGGTGAC TGGTGAC:18 CGTGTCA:0 CDS + 159/1308 53/435 missense_variant c.159_165delCGTGTCAinsTGGTGAC p.ValSer54GlyAsp M5005_RS02870 eno surface-displayed alpha-enolase SRR21169799.fasta NC_007297 559838 snp A G G:20 A:0 CDS + 102/162 34/53 synonymous_variant c.102A>G p.Ser34Ser M5005_RS02895 sagA TOMM family cytolysin streptolysin S SRR21169799.fasta NC_007297 563631 snp G A A:20 G:0 CDS + 154/672 52/223 missense_variant c.154G>A p.Ala52Thr M5005_RS02915 CPBP family intramembrane glutamic endopeptidase SRR21169799.fasta NC_007297 592949 snp A C C:20 A:0 CDS + 424/3216 142/1071 missense_variant c.424A>C p.Lys142Gln M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169799.fasta NC_007297 595011 snp G A A:20 G:0 CDS + 2486/3216 829/1071 missense_variant c.2486G>A p.Ser829Asn M5005_RS03055 rexB ATP-dependent nuclease subunit B SRR21169799.fasta NC_007297 603488 snp G A A:20 G:0 CDS + 406/1110 136/369 missense_variant c.406G>A p.Ala136Thr M5005_RS03085 rpoD RNA polymerase sigma factor RpoD SRR21169799.fasta NC_007297 613633 snp T C C:20 T:0 CDS + 899/2475 300/824 missense_variant c.899T>C p.Leu300Pro M5005_RS03130 LTA synthase family protein SRR21169799.fasta NC_007297 626494 snp G A A:20 G:0 CDS + 105/1164 35/387 synonymous_variant c.105G>A p.Leu35Leu M5005_RS03195 class I SAM-dependent rRNA methyltransferase SRR21169799.fasta NC_007297 661707 snp G A A:20 G:0 CDS + 130/732 44/243 missense_variant c.130G>A p.Ala44Thr M5005_RS03355 trmD tRNA (guanosine(37)-N1)-methyltransferase TrmD SRR21169799.fasta NC_007297 681603 snp A G G:20 A:0 SRR21169799.fasta NC_007297 684809 snp A G G:20 A:0 CDS + 181/879 61/292 missense_variant c.181A>G p.Ile61Val M5005_RS03470 mvk mevalonate kinase SRR21169799.fasta NC_007297 687224 snp C A A:20 C:0 CDS + 799/1008 267/335 missense_variant c.799C>A p.Leu267Ile M5005_RS03480 phosphomevalonate kinase SRR21169799.fasta NC_007297 730823 snp C T T:20 C:0 CDS + 1007/2211 336/736 missense_variant c.1007C>T p.Ala336Val M5005_RS03700 recJ single-stranded-DNA-specific exonuclease RecJ SRR21169799.fasta NC_007297 741899 snp C A A:20 C:0 CDS + 375/1248 125/415 synonymous_variant c.375C>A p.Gly125Gly M5005_RS03760 tetratricopeptide repeat protein SRR21169799.fasta NC_007297 768350 snp C A A:20 C:0 CDS + 939/1356 313/451 missense_variant c.939C>A p.Asp313Glu M5005_RS03860 glmM phosphoglucosamine mutase SRR21169799.fasta NC_007297 779899 snp T C C:20 T:0 CDS + 113/408 38/135 missense_variant c.113T>C p.Leu38Pro M5005_RS09825 nucleoside-diphosphate kinase SRR21169799.fasta NC_007297 782255 snp A G G:20 A:0 SRR21169799.fasta NC_007297 784467 snp T C C:20 T:0 CDS + 441/1020 147/339 synonymous_variant c.441T>C p.Val147Val M5005_RS03935 YeiH family protein SRR21169799.fasta NC_007297 791442 snp T A A:20 T:0 CDS + 1034/1047 345/348 missense_variant c.1034T>A p.Val345Glu M5005_RS03970 extracellular solute-binding protein SRR21169799.fasta NC_007297 819098 snp G A A:20 G:0 CDS + 244/888 82/295 missense_variant c.244G>A p.Ala82Thr M5005_RS04145 murB UDP-N-acetylmuramate dehydrogenase SRR21169799.fasta NC_007297 850245 snp A T T:20 A:0 CDS + 305/1284 102/427 missense_variant c.305A>T p.Lys102Met M5005_RS04300 nucleobase:cation symporter-2 family protein SRR21169799.fasta NC_007297 854429 snp C T T:20 C:0 CDS + 145/840 49/279 missense_variant c.145C>T p.Pro49Ser M5005_RS04325 prmC peptide chain release factor N(5)-glutamine methyltransferase SRR21169799.fasta NC_007297 899397 snp G C C:20 G:0 CDS - 834/1071 278/356 synonymous_variant c.834C>G p.Gly278Gly M5005_RS04550 xerS tyrosine recombinase XerS SRR21169799.fasta NC_007297 916225 snp C A A:20 C:0 SRR21169799.fasta NC_007297 923079 snp G A A:20 G:0 CDS - 302/1200 101/399 missense_variant c.302C>T p.Ala101Val M5005_RS04650 NADH-dependent flavin oxidoreductase SRR21169799.fasta NC_007297 937373 snp T C C:20 T:0 CDS - 393/1311 131/436 synonymous_variant c.393A>G p.Gly131Gly M5005_RS04720 sensor histidine kinase SRR21169799.fasta NC_007297 942163 snp G A A:20 G:0 CDS - 11/654 4/217 missense_variant c.11C>T p.Thr4Met M5005_RS04735 phoU phosphate signaling complex protein PhoU SRR21169799.fasta NC_007297 942633 snp G T T:20 G:0 CDS - 367/759 123/252 missense_variant c.367C>A p.His123Asn M5005_RS04740 pstB phosphate ABC transporter ATP-binding protein PstB SRR21169799.fasta NC_007297 957886 snp T C C:20 T:0 SRR21169799.fasta NC_007297 959346 snp C T T:20 C:0 SRR21169799.fasta NC_007297 983438 snp G C C:20 G:0 SRR21169799.fasta NC_007297 1046996 snp T C C:20 T:0 CDS - 193/1539 65/512 missense_variant c.193A>G p.Asn65Asp M5005_RS05320 dltA D-alanine--poly(phosphoribitol) ligase subunit DltA SRR21169799.fasta NC_007297 1064592 snp C T T:20 C:0 CDS - 705/732 235/243 synonymous_variant c.705G>A p.Leu235Leu M5005_RS05405 pseudouridine synthase SRR21169799.fasta NC_007297 1082253 snp C T T:20 C:0 CDS - 661/1197 221/398 missense_variant c.661G>A p.Ala221Thr M5005_RS05485 metK methionine adenosyltransferase SRR21169799.fasta NC_007297 1121024 snp T C C:20 T:0 CDS - 146/228 49/75 missense_variant c.146A>G p.Lys49Arg M5005_RS05665 hypothetical protein SRR21169799.fasta NC_007297 1147752 snp A G G:20 A:0 CDS - 1152/1206 384/401 synonymous_variant c.1152T>C p.Ile384Ile M5005_RS05790 glucosaminidase domain-containing protein SRR21169799.fasta NC_007297 1212101 snp G A A:20 G:0 CDS - 1661/1842 554/613 missense_variant c.1661C>T p.Ala554Val M5005_RS06200 typA translational GTPase TypA SRR21169799.fasta NC_007297 1219790 snp T C C:20 T:0 CDS - 465/977 155/324 synonymous_variant c.465A>G p.Gly155Gly M5005_RS06240 LacI family DNA-binding transcriptional regulator SRR21169799.fasta NC_007297 1233554 snp A G G:20 A:0 CDS - 928/1080 310/359 missense_variant c.928T>C p.Cys310Arg M5005_RS06310 MmcQ/YjbR family DNA-binding protein SRR21169799.fasta NC_007297 1238124 snp G A A:20 G:0 SRR21169799.fasta NC_007297 1238673 snp G A A:20 G:0 CDS - 212/624 71/207 missense_variant c.212C>T p.Ala71Val M5005_RS06330 TlpA disulfide reductase family protein SRR21169799.fasta NC_007297 1251193 snp G A A:20 G:0 CDS - 404/564 135/187 missense_variant c.404C>T p.Ser135Leu M5005_RS06380 AAA family ATPase SRR21169799.fasta NC_007297 1294671 del CT C C:19 CT:0 SRR21169799.fasta NC_007297 1373176 snp C A A:20 C:0 CDS - 198/306 66/101 missense_variant c.198G>T p.Met66Ile M5005_RS06950 PTS sugar transporter subunit IIB SRR21169799.fasta NC_007297 1391003 snp C A A:20 C:0 CDS - 583/1908 195/635 missense_variant c.583G>T p.Ala195Ser M5005_RS07050 gp58-like family protein SRR21169799.fasta NC_007297 1391334 snp A C C:20 A:0 CDS - 252/1908 84/635 synonymous_variant c.252T>G p.Ala84Ala M5005_RS07050 gp58-like family protein SRR21169799.fasta NC_007297 1404939 complex TTTA ATTT ATTT:19 TTTA:0 SRR21169799.fasta NC_007297 1407497 snp C T T:20 C:0 CDS - 869/1533 290/510 missense_variant c.869G>A p.Gly290Glu M5005_RS07140 phage portal protein SRR21169799.fasta NC_007297 1408878 ins C CA CA:18 C:0 CDS - 780/1278 260/425 frameshift_variant c.780dupT p.Gly261fs M5005_RS07145 PBSX family phage terminase large subunit SRR21169799.fasta NC_007297 1446116 snp C T T:20 C:0 CDS - 693/735 231/244 synonymous_variant c.693G>A p.Thr231Thr M5005_RS07380 fabG 3-oxoacyl-[acyl-carrier-protein] reductase SRR21169799.fasta NC_007297 1458349 snp A G G:20 A:0 CDS - 563/708 188/235 missense_variant c.563T>C p.Leu188Pro M5005_RS07445 histidine phosphatase family protein SRR21169799.fasta NC_007297 1467405 snp T C C:20 T:0 CDS + 86/453 29/150 missense_variant c.86T>C p.Val29Ala M5005_RS07495 universal stress protein SRR21169799.fasta NC_007297 1488191 snp A G G:20 A:0 CDS - 486/3828 162/1275 synonymous_variant c.486T>C p.Gly162Gly M5005_RS07570 shr heme-binding protein Shr SRR21169799.fasta NC_007297 1535209 snp A G G:20 A:0 SRR21169799.fasta NC_007297 1568351 snp T C C:20 T:0 CDS - 564/576 188/191 synonymous_variant c.564A>G p.Glu188Glu M5005_RS07960 rpoE DNA-directed RNA polymerase subunit delta SRR21169799.fasta NC_007297 1624722 snp A G G:20 A:0 CDS - 123/543 41/180 synonymous_variant c.123T>C p.Asp41Asp M5005_RS08250 NADPH-dependent FMN reductase SRR21169799.fasta NC_007297 1630160 del CT C C:19 CT:0 SRR21169799.fasta NC_007297 1636851 snp A G G:20 A:0 CDS - 2943/3498 981/1165 synonymous_variant c.2943T>C p.Ala981Ala M5005_RS08295 pullulanase SRR21169799.fasta NC_007297 1681273 del TCCATCAAAG T T:15 TCCATCAAAG:0 CDS - 674/942 222/313 disruptive_inframe_deletion c.666_674delCTTTGATGG p.Phe223_Gly225del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169799.fasta NC_007297 1681791 del GCCAGTCATCTCCAGA G G:15 GCCAGTCATCTCCAGA:1 CDS - 156/942 48/313 conservative_inframe_deletion c.142_156delTCTGGAGATGACTGG p.Ser48_Trp52del M5005_RS08470 sic complement-mediated lysis inhibitor Sic SRR21169799.fasta NC_007297 1694316 snp C T T:20 C:0 CDS - 199/297 67/98 missense_variant c.199G>A p.Val67Ile M5005_RS08525 DUF4298 domain-containing protein SRR21169799.fasta NC_007297 1702540 snp C T T:20 C:0 CDS - 524/1089 175/362 stop_gained c.524G>A p.Trp175* M5005_RS08565 glycerol dehydrogenase SRR21169799.fasta NC_007297 1732470 snp C T T:20 C:0 CDS + 21/2031 7/676 synonymous_variant c.21C>T p.Thr7Thr M5005_RS08710 urocanate hydratase SRR21169799.fasta NC_007297 1734749 snp G A A:20 G:0 CDS + 181/900 61/299 missense_variant c.181G>A p.Ala61Thr M5005_RS08715 ftcD glutamate formimidoyltransferase SRR21169799.fasta NC_007297 1809755 snp T C C:20 T:0 CDS + 330/873 110/290 synonymous_variant c.330T>C p.Val110Val M5005_RS09055 sdaAA L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha SRR21169799.fasta NC_007297 1826928 ins A ATTAATCAAAAAATTCATTTGGGTCTTATTT ATTAATCAAAAAATTCATTTGGGTCTTATTT:10 A:0 SRR21169799.fasta NC_007297 1828734 snp G A A:20 G:0 CDS + 211/873 71/290 missense_variant c.211G>A p.Gly71Arg M5005_RS09140 YitT family protein