BioSample_ID Database Status ENA_Accession Alias ID_Match Title_x Organism_x Taxonomy_ID Description strain host_x geo_loc_name collection_date organism all_attributes ENA_Links isolation_source_x isolate Title_y Organism_y isolation_source_y host_y Text_Representation Habitat_Path Habitat_Level1 Habitat_Level2 Habitat_Level3 Habitat_Level4 Habitat_Level5 GOLD_Path_ID Classification_Level Overall_Confidence Classification_Method Quality_Score Key_Terms Word_Count SAMD00250058 ena Success SAMD00250058 SAMD00250058 MATCH Ralstonia solanacearum MAFF 211479 Ralstonia solanacearum 305 Keywords: GSC:MIxS;MIGS:6.0 MAFF 211479 Ralstonia solanacearum "{""strain"": ""MAFF 211479"", ""INSDC_secondary_accession"": ""DRS265897"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Ralstonia solanacearum"", ""project_name"": ""Genome sequences of Ralstonia solanacearum infecting ginger plants"", ""sample_name"": ""MAFF 211479"", ""num_replicons"": ""2"", ""locus_tag_prefix"": ""MAFF211479"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2020-09-29"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS265897&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS265897&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format Ralstonia solanacearum MAFF 211479 Ralstonia solanacearum nan Ralstonia solanacearum MAFF 211479 nan nan Ralstonia solanacearum nan Host-associated -> Mammals -> Auditory/Hearing system -> Inner ear Host-associated Mammals Auditory/Hearing system Inner ear 6854_L4 4 0.175 GOLD 5-level classifier Basic solanacearum; nan; maff; ralstonia 10 SAMD00250059 ena Success SAMD00250059 SAMD00250059 MATCH Ralstonia solanacearum MAFF 211491 Ralstonia solanacearum 305 Keywords: GSC:MIxS;MIGS:6.0 MAFF 211491 Ralstonia solanacearum "{""strain"": ""MAFF 211491"", ""INSDC_secondary_accession"": ""DRS265898"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Ralstonia solanacearum"", ""project_name"": ""Genome sequences of Ralstonia solanacearum infecting ginger plants"", ""sample_name"": ""MAFF 211491"", ""num_replicons"": ""2"", ""locus_tag_prefix"": ""MAFF211491"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2020-09-29"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS265898&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS265898&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format Ralstonia solanacearum MAFF 211491 Ralstonia solanacearum nan Ralstonia solanacearum MAFF 211491 nan nan Ralstonia solanacearum nan Host-associated -> Mammals -> Auditory/Hearing system -> Inner ear Host-associated Mammals Auditory/Hearing system Inner ear 6854_L4 4 0.175 GOLD 5-level classifier Basic ralstonia; solanacearum; nan; maff 10 SAMD00250060 ena Success SAMD00250060 SAMD00250060 MATCH Ralstonia solanacearum MAFF 301560 Ralstonia solanacearum 305 Keywords: GSC:MIxS;MIGS:6.0 MAFF 301560 Ralstonia solanacearum "{""strain"": ""MAFF 301560"", ""INSDC_secondary_accession"": ""DRS265899"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Ralstonia solanacearum"", ""project_name"": ""Genome sequences of Ralstonia solanacearum infecting ginger plants"", ""sample_name"": ""MAFF 301560"", ""num_replicons"": ""2"", ""locus_tag_prefix"": ""MAFF301560"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2020-09-29"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS265899&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS265899&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format Ralstonia solanacearum MAFF 301560 Ralstonia solanacearum nan Ralstonia solanacearum MAFF 301560 nan nan Ralstonia solanacearum nan Host-associated -> Mammals -> Auditory/Hearing system -> Inner ear Host-associated Mammals Auditory/Hearing system Inner ear 6854_L4 4 0.175 GOLD 5-level classifier Basic nan; ralstonia; maff; solanacearum 10 SAMD00250061 ena Success SAMD00250061 SAMD00250061 MATCH Ralstonia solanacearum MAFF 241647 Ralstonia solanacearum 305 Keywords: GSC:MIxS;MIGS:6.0 MAFF 241647 Ralstonia solanacearum "{""strain"": ""MAFF 241647"", ""INSDC_secondary_accession"": ""DRS265900"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Ralstonia solanacearum"", ""project_name"": ""Genome sequences of Ralstonia solanacearum infecting ginger plants"", ""sample_name"": ""MAFF 241647"", ""num_replicons"": ""2"", ""locus_tag_prefix"": ""MAFF241647"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2020-09-29"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS265900&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS265900&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format Ralstonia solanacearum MAFF 241647 Ralstonia solanacearum nan Ralstonia solanacearum MAFF 241647 nan nan Ralstonia solanacearum nan Host-associated -> Mammals -> Auditory/Hearing system -> Inner ear Host-associated Mammals Auditory/Hearing system Inner ear 6854_L4 4 0.175 GOLD 5-level classifier Basic solanacearum; nan; maff; ralstonia 10 SAMD00250062 ena Success SAMD00250062 SAMD00250062 MATCH Ralstonia solanacearum MAFF 241648 Ralstonia solanacearum 305 Keywords: GSC:MIxS;MIGS:6.0 MAFF 241648 Ralstonia solanacearum "{""strain"": ""MAFF 241648"", ""INSDC_secondary_accession"": ""DRS265901"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Ralstonia solanacearum"", ""project_name"": ""Genome sequences of Ralstonia solanacearum infecting ginger plants"", ""sample_name"": ""MAFF 241648"", ""num_replicons"": ""2"", ""locus_tag_prefix"": ""MAFF241648"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2020-09-29"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS265901&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS265901&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format Ralstonia solanacearum MAFF 241648 Ralstonia solanacearum nan Ralstonia solanacearum MAFF 241648 nan nan Ralstonia solanacearum nan Host-associated -> Mammals -> Auditory/Hearing system -> Inner ear Host-associated Mammals Auditory/Hearing system Inner ear 6854_L4 4 0.175 GOLD 5-level classifier Basic nan; maff; ralstonia; solanacearum 10 SAMD00254951 ena Success SAMD00254951 SAMD00254951 MATCH Escherichia coli SP15 Escherichia coli 562 Keywords: GSC:MIxS;MIGS:6.0 SP15 Homo sapiens Escherichia coli "{""health_disease_stat"": ""meningitis"", ""strain"": ""SP15"", ""INSDC_secondary_accession"": ""DRS174291"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Escherichia coli"", ""project_name"": ""Genomic comparison of bovine- and human-associated E. coli"", ""sample_name"": ""SP15"", ""host"": ""Homo sapiens"", ""locus_tag_prefix"": ""EcSP15"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2021-03-04"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS174291&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS174291&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00166229 ena Success SAMD00166229 SAMD00166229 MATCH Bacterial strain IAD-21 isolated from Acer palmatum bark belonging to Abditibacteriota. Abditibacteriota bacterium IAD-21 2562437 Keywords: GSC:MIxS;MIGS:5.0 IAD-21 Acer palmatum Japan:Shizuoka, Atami, The New Technology Development Foundation, Botanical Research Gardens 2016-06-07 Abditibacteriota bacterium IAD-21 "{""strain"": ""IAD-21"", ""collection_date"": ""2016-06-07"", ""isol_growth_condt"": ""not applicable"", ""ref_biomaterial"": ""not applicable"", ""INSDC_secondary_accession"": ""DRS234006"", ""organism"": ""Abditibacteriota bacterium IAD-21"", ""env_broad_scale"": ""temperate mixed forest biome"", ""locus_tag_prefix"": ""IAD21"", ""project_name"": ""Whole genome sequencing of strain IAD-21 of the Abditibacteriota"", ""env_local_scale"": ""temperate mixed broadleaf forest"", ""NCBI_submission_package"": ""MIGS.ba.5.0"", ""host_spec_range"": ""66201"", ""host"": ""Acer palmatum"", ""num_replicons"": ""not applicable"", ""geo_loc_name"": ""Japan:Shizuoka, Atami, The New Technology Development Foundation, Botanical Research Gardens"", ""env_medium"": ""wood"", ""lat_lon"": ""35.107336 N 139.047729 E"", ""sample_name"": ""IAD-21"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2022-04-04"", ""ENA-LAST-UPDATE"": ""2022-10-31""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS234006&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS234006&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00256261 ena Success SAMD00256261 SAMD00256261 MATCH Genomic_DNA_A_complete Ralstonia solanacearum 305 Keywords: GSC:MIxS;MIGS:6.0 MAFF 211472 Zingiber officinale Ralstonia solanacearum "{""strain"": ""MAFF 211472"", ""INSDC_secondary_accession"": ""DRS163605"", ""NCBI_submission_package"": ""MIGS.ba.plant-associated.6.0"", ""organism"": ""Ralstonia solanacearum"", ""project_name"": ""Comparative genomic analysis of Ralstonia solanacearum"", ""sample_name"": ""A_complete"", ""host"": ""Zingiber officinale"", ""culture_collection"": ""MAFF:211472"", ""locus_tag_prefix"": ""RPSA"", ""BioSampleModel"": ""MIGS.ba.plant-associated"", ""ENA-FIRST-PUBLIC"": ""2020-11-16"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS163605&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS163605&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00256262 ena Success SAMD00256262 SAMD00256262 MATCH Genomic_DNA_B_complete Ralstonia solanacearum 305 Keywords: GSC:MIxS;MIGS:6.0 MAFF 211479 Zingiber officinale Ralstonia solanacearum "{""strain"": ""MAFF 211479"", ""INSDC_secondary_accession"": ""DRS163606"", ""NCBI_submission_package"": ""MIGS.ba.plant-associated.6.0"", ""organism"": ""Ralstonia solanacearum"", ""project_name"": ""Comparative genomic analysis of Ralstonia solanacearum"", ""sample_name"": ""B_complete"", ""host"": ""Zingiber officinale"", ""culture_collection"": ""MAFF:211479"", ""locus_tag_prefix"": ""RPSB"", ""BioSampleModel"": ""MIGS.ba.plant-associated"", ""ENA-FIRST-PUBLIC"": ""2020-11-16"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS163606&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS163606&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00256263 ena Success SAMD00256263 SAMD00256263 MATCH Genomic_DNA_D_complete Ralstonia solanacearum 305 Keywords: GSC:MIxS;MIGS:6.0 MAFF 311693 Curcuma aromatica Ralstonia solanacearum "{""strain"": ""MAFF 311693"", ""INSDC_secondary_accession"": ""DRS163607"", ""NCBI_submission_package"": ""MIGS.ba.plant-associated.6.0"", ""organism"": ""Ralstonia solanacearum"", ""project_name"": ""Comparative genomic analysis of Ralstonia solanacearum"", ""sample_name"": ""D_complete"", ""host"": ""Curcuma aromatica"", ""culture_collection"": ""MAFF:311693"", ""locus_tag_prefix"": ""RPSD"", ""BioSampleModel"": ""MIGS.ba.plant-associated"", ""ENA-FIRST-PUBLIC"": ""2020-11-16"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS163607&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS163607&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00265708 ena Success SAMD00265708 SAMD00265708 MATCH Streptococcus parasuis SUT-380 Streptococcus parasuis 1501662 Keywords: GSC:MIxS;MIGS:6.0 SUT-380 Japan 2013 Streptococcus parasuis "{""strain"": ""SUT-380"", ""isol_growth_condt"": ""25385995"", ""ref_biomaterial"": ""25385995"", ""INSDC_secondary_accession"": ""DRS217919"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Streptococcus parasuis"", ""project_name"": ""Genome sequencing of Streptococcus parasuis"", ""collection_date"": ""2013"", ""sample_name"": ""SUT-380"", ""geo_loc_name"": ""Japan"", ""num_replicons"": ""1"", ""locus_tag_prefix"": ""SUT380"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2021-12-27"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS217919&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS217919&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00264093 ena Success SAMD00264093 SAMD00264093 MATCH Salmonella enterica serovar Cerro 2017 Salmonella enterica 28901 Keywords: GSC:MIxS;MIGS:6.0 SECerM2017 Japan 2012-08 Salmonella enterica "{""strain"": ""SECerM2017"", ""INSDC_secondary_accession"": ""DRS268087"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Salmonella enterica"", ""project_name"": ""Extended-spectrum cephalosporins-resistant Salmonella derived from layer chicken and its farms in Japan"", ""collection_date"": ""2012-08"", ""sample_name"": ""Salmonella_enterica_serovar_Cerro_2017"", ""geo_loc_name"": ""Japan"", ""locus_tag_prefix"": ""SAML2017"", ""env_medium"": ""egg shell"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2022-12-12"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS268087&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS268087&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00206787 ena Success SAMD00206787 SAMD00206787 MATCH Salmonella enterica serovar Ohio 1960 Salmonella enterica 28901 Keywords: GSC:MIxS;MIGS:6.0 SEOhiM1960 Japan 2012-01 Salmonella enterica "{""strain"": ""SEOhiM1960"", ""INSDC_secondary_accession"": ""DRS268085"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Salmonella enterica"", ""project_name"": ""Extended-spectrum cephalosporins-resistant Salmonella derived from layer chicken and its farms in Japan"", ""collection_date"": ""2012-01"", ""sample_name"": ""Salmonella_enterica_serovar_Ohio_1960"", ""geo_loc_name"": ""Japan"", ""locus_tag_prefix"": ""SAML1960"", ""env_medium"": ""egg shell"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2022-12-12"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS268085&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS268085&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00206788 ena Success SAMD00206788 SAMD00206788 MATCH Salmonella enterica serovar Ohio 2008 Salmonella enterica 28901 Keywords: GSC:MIxS;MIGS:6.0 SEOhiM2008 Japan 2012-06 Salmonella enterica "{""strain"": ""SEOhiM2008"", ""INSDC_secondary_accession"": ""DRS268086"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Salmonella enterica"", ""project_name"": ""Extended-spectrum cephalosporins-resistant Salmonella derived from layer chicken and its farms in Japan"", ""collection_date"": ""2012-06"", ""sample_name"": ""Salmonella_enterica_serovar_Ohio_2008"", ""geo_loc_name"": ""Japan"", ""locus_tag_prefix"": ""SAML2008"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2022-12-12"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS268086&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS268086&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00133958 ena Success SAMD00133958 SAMD00133958 MATCH SEY-like toxin producing Staphylococcus argenteus Staphylococcus argenteus 985002 Keywords: GSC:MIxS;MIGS:6.0 SARG0275 Homo sapiens Japan:Tokyo, Shinju-ku 2016-11-28 Staphylococcus argenteus "{""strain"": ""SARG0275"", ""collection_date"": ""2016-11-28"", ""isol_growth_condt"": ""missing"", ""ref_biomaterial"": ""not applicable"", ""organism"": ""Staphylococcus argenteus"", ""env_broad_scale"": ""not applicable"", ""locus_tag_prefix"": ""SARG0275"", ""project_name"": ""Human Skin Microbiome"", ""env_local_scale"": ""not applicable"", ""health_disease_stat"": ""atopic dermatitis"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""host"": ""Homo sapiens"", ""num_replicons"": ""not applicable"", ""geo_loc_name"": ""Japan:Tokyo, Shinju-ku"", ""env_medium"": ""swab"", ""lat_lon"": ""35.681675 N 139.718121 E"", ""isolation_source"": ""human skin"", ""sample_name"": ""Staphylococcus argenteus SARG0275"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2018-07-27"", ""ENA-LAST-UPDATE"": ""2022-04-04""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00133958&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00133958&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format human skin SEY-like toxin producing Staphylococcus argenteus Staphylococcus argenteus human skin Homo sapiens human skin SEY-like toxin producing Staphylococcus argenteus Homo sapiens Japan:Tokyo, Shinju-ku Staphylococcus argenteus 2016-11-28 Host-associated -> Fish -> Integumentary system -> Skin -> Epidermal mucus Host-associated Fish Integumentary system Skin Epidermal mucus 6921_L5 5 0.2 GOLD 5-level classifier Basic japan; tokyo; sapiens; epidermal; integument 14 SAMD00275672 ena Success SAMD00275672 SAMD00275672 MATCH Escherichia coli O121:H19 strain 51104 Escherichia coli 562 Keywords: GSC:MIxS;MIGS:5.0 51104 Homo sapiens Japan 2005 Escherichia coli "{""strain"": ""51104"", ""collection_date"": ""2005"", ""isol_growth_condt"": ""missing"", ""ref_biomaterial"": ""missing"", ""organism"": ""Escherichia coli"", ""env_broad_scale"": ""not applicable"", ""locus_tag_prefix"": ""EC51104"", ""project_name"": ""Comparative genomic analysis of Shiga-toxin producing Escherichia coli"", ""env_local_scale"": ""not applicable"", ""health_disease_stat"": ""HUS"", ""NCBI_submission_package"": ""MIGS.ba.5.0"", ""host"": ""Homo sapiens"", ""num_replicons"": ""missing"", ""geo_loc_name"": ""Japan"", ""env_medium"": ""feces"", ""lat_lon"": ""missing"", ""sample_name"": ""51104"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2021-07-16"", ""ENA-LAST-UPDATE"": ""2022-04-05""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00275672&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00275672&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00275768 ena Success SAMD00275768 SAMD00275768 MATCH Escherichia coli O121:H19 strain SE14002 Escherichia coli 562 Keywords: GSC:MIxS;MIGS:6.0 SE14002 Homo sapiens Japan 2014 Escherichia coli "{""health_disease_stat"": ""bloody diarrhea"", ""strain"": ""SE14002"", ""INSDC_secondary_accession"": ""DRS195773"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Escherichia coli"", ""project_name"": ""Comparative genomic analysis of Shiga-toxin producing Escherichia coli"", ""collection_date"": ""2014"", ""sample_name"": ""SE14002"", ""geo_loc_name"": ""Japan"", ""host"": ""Homo sapiens"", ""locus_tag_prefix"": ""SE14002"", ""env_medium"": ""feces"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2021-07-14"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS195773&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS195773&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00275772 ena Success SAMD00275772 SAMD00275772 MATCH Escherichia coli O121:H19 strain CEC14159 Escherichia coli 562 Keywords: GSC:MIxS;MIGS:6.0 CEC14159 Homo sapiens Japan 2014 Escherichia coli "{""health_disease_stat"": ""bloody diarrhea"", ""strain"": ""CEC14159"", ""INSDC_secondary_accession"": ""DRS195777"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Escherichia coli"", ""project_name"": ""Comparative genomic analysis of Shiga-toxin producing Escherichia coli"", ""collection_date"": ""2014"", ""sample_name"": ""CEC14159"", ""geo_loc_name"": ""Japan"", ""host"": ""Homo sapiens"", ""locus_tag_prefix"": ""CEC14159"", ""env_medium"": ""feces"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2021-07-14"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS195777&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS195777&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00275791 ena Success SAMD00275791 SAMD00275791 MATCH Escherichia coli O121:H19 strain E15042 Escherichia coli 562 Keywords: GSC:MIxS;MIGS:6.0 E15042 Homo sapiens Japan 2015 Escherichia coli "{""health_disease_stat"": ""bloody diarrhea"", ""strain"": ""E15042"", ""INSDC_secondary_accession"": ""DRS195796"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Escherichia coli"", ""project_name"": ""Comparative genomic analysis of Shiga-toxin producing Escherichia coli"", ""collection_date"": ""2015"", ""sample_name"": ""E15042"", ""geo_loc_name"": ""Japan"", ""host"": ""Homo sapiens"", ""locus_tag_prefix"": ""E15042"", ""env_medium"": ""feces"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2021-07-14"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS195796&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS195796&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00281820 ena Success SAMD00281820 SAMD00281820 MATCH Complete genome sequences of Providencia vermicola str. N3 Providencia vermicola 333965 Keywords: GSC:MIxS;MIGS:6.0 N3 Homo sapiens Nepal 2015 Providencia vermicola "{""strain"": ""N3"", ""collection_date"": ""2015"", ""isol_growth_condt"": ""missing"", ""ref_biomaterial"": ""missing"", ""INSDC_secondary_accession"": ""DRS365140"", ""organism"": ""Providencia vermicola"", ""env_broad_scale"": ""missing"", ""locus_tag_prefix"": ""PRVEN3"", ""project_name"": ""Whole genome sequencing of blaNDM-1 and blaOXA-181 co-harboring pan-drug resistant Providencia vermicola isolated in Nepal"", ""env_local_scale"": ""missing"", ""NCBI_submission_package"": ""MIGS.ba.human-associated.6.0"", ""host"": ""Homo sapiens"", ""num_replicons"": ""missing"", ""geo_loc_name"": ""Nepal"", ""env_medium"": ""missing"", ""lat_lon"": ""missing"", ""sample_name"": ""Providencia_vermicola_N3"", ""BioSampleModel"": ""MIGS.ba.human-associated"", ""ENA-FIRST-PUBLIC"": ""2024-02-22"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS365140&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS365140&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format Complete genome sequences of Providencia vermicola str. N3 Providencia vermicola Homo sapiens nan Complete genome sequences of Providencia vermicola str. N3 Homo sapiens Nepal Providencia vermicola 2015 Host-associated -> Mammals: Human -> Malignant tumor -> Carcinoma -> Gastric carcinoma Host-associated Mammals: Human Malignant tumor Carcinoma Gastric carcinoma 6180_L5 5 0.156 GOLD 5-level classifier Basic nan; nepal; sapiens; sequences; str 15 SAMD00282210 ena Success SAMD00282210 SAMD00282210 MATCH Enterobacter_37 Enterobacter cloacae 550 Keywords: GSC:MIxS;MIGS:6.0 En37 Canis lupus familiaris Japan:Chiba 2015 Enterobacter cloacae "{""strain"": ""En37"", ""INSDC_secondary_accession"": ""DRS178811"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Enterobacter cloacae"", ""project_name"": ""Whole genome sequence of antibiotic resistance Enterobacter spp. derived from dogs"", ""collection_date"": ""2015"", ""sample_name"": ""En37"", ""geo_loc_name"": ""Japan:Chiba"", ""host"": ""Canis lupus familiaris"", ""locus_tag_prefix"": ""R1TS"", ""env_medium"": ""Pus"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2021-02-19"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS178811&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS178811&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00283281 ena Success SAMD00283281 SAMD00283281 MATCH NtRootA2 Arthrobacter sp. NtRootA2 2830984 Keywords: GSC:MIxS;MIGS:5.0 NtRootA2 Nicotiana tabacum Japan:Kyoto, Kameoka 2019-01 Arthrobacter sp. NtRootA2 "{""strain"": ""NtRootA2"", ""collection_date"": ""2019-01"", ""isol_growth_condt"": ""missing"", ""ref_biomaterial"": ""missing"", ""organism"": ""Arthrobacter sp. NtRootA2"", ""env_broad_scale"": ""olant microbiome tobacco root"", ""locus_tag_prefix"": ""NtRootA2"", ""project_name"": ""Genome sequencing and assembly of Arthrobacter isolates derived from tobacco roots and metabolite-treated soils"", ""env_local_scale"": ""tobacco root"", ""NCBI_submission_package"": ""MIGS.ba.plant-associated.5.0"", ""host"": ""Nicotiana tabacum"", ""num_replicons"": ""not applicable"", ""geo_loc_name"": ""Japan:Kyoto, Kameoka"", ""env_medium"": ""root"", ""lat_lon"": ""34.9993438 N 135.5521939 E"", ""sample_name"": ""Arthrobacter sp. NtRootA2"", ""BioSampleModel"": ""MIGS.ba.plant-associated"", ""ENA-FIRST-PUBLIC"": ""2021-09-02"", ""ENA-LAST-UPDATE"": ""2022-04-05""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00283281&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00283281&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00283282 ena Success SAMD00283282 SAMD00283282 MATCH NtRootA4 Arthrobacter sp. NtRootA4 2830985 Keywords: GSC:MIxS;MIGS:5.0 NtRootA4 Nicotiana tabacum Japan:Kyoto, Kameoka 2019-01 Arthrobacter sp. NtRootA4 "{""strain"": ""NtRootA4"", ""collection_date"": ""2019-01"", ""isol_growth_condt"": ""missing"", ""ref_biomaterial"": ""missing"", ""organism"": ""Arthrobacter sp. NtRootA4"", ""env_broad_scale"": ""olant microbiome tobacco root"", ""locus_tag_prefix"": ""NtRootA4"", ""project_name"": ""Genome sequencing and assembly of Arthrobacter isolates derived from tobacco roots and metabolite-treated soils"", ""env_local_scale"": ""tobacco root"", ""NCBI_submission_package"": ""MIGS.ba.plant-associated.5.0"", ""host"": ""Nicotiana tabacum"", ""num_replicons"": ""not applicable"", ""geo_loc_name"": ""Japan:Kyoto, Kameoka"", ""env_medium"": ""root"", ""lat_lon"": ""34.9993438 N 135.5521939 E"", ""sample_name"": ""Arthrobacter sp. NtRootA4"", ""BioSampleModel"": ""MIGS.ba.plant-associated"", ""ENA-FIRST-PUBLIC"": ""2021-09-02"", ""ENA-LAST-UPDATE"": ""2022-04-05""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00283282&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00283282&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00283284 ena Success SAMD00283284 SAMD00283284 MATCH NtRootC7 Arthrobacter sp. NtRootC7 2830987 Keywords: GSC:MIxS;MIGS:5.0 NtRootC7 Nicotiana tabacum Japan:Kyoto, Kameoka 2019-01 Arthrobacter sp. NtRootC7 "{""strain"": ""NtRootC7"", ""collection_date"": ""2019-01"", ""isol_growth_condt"": ""missing"", ""ref_biomaterial"": ""missing"", ""organism"": ""Arthrobacter sp. NtRootC7"", ""env_broad_scale"": ""olant microbiome tobacco root"", ""locus_tag_prefix"": ""NtRootC7"", ""project_name"": ""Genome sequencing and assembly of Arthrobacter isolates derived from tobacco roots and metabolite-treated soils"", ""env_local_scale"": ""tobacco root"", ""NCBI_submission_package"": ""MIGS.ba.plant-associated.5.0"", ""host"": ""Nicotiana tabacum"", ""num_replicons"": ""not applicable"", ""geo_loc_name"": ""Japan:Kyoto, Kameoka"", ""env_medium"": ""root"", ""lat_lon"": ""34.9993438 N 135.5521939 E"", ""sample_name"": ""Arthrobacter sp. NtRootC7"", ""BioSampleModel"": ""MIGS.ba.plant-associated"", ""ENA-FIRST-PUBLIC"": ""2021-09-02"", ""ENA-LAST-UPDATE"": ""2022-04-05""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00283284&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00283284&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00283285 ena Success SAMD00283285 SAMD00283285 MATCH NtRootC45 Arthrobacter sp. NtRootC45 2830988 Keywords: GSC:MIxS;MIGS:5.0 NtRootC45 Nicotiana tabacum Japan:Kyoto, Kameoka 2019-01 Arthrobacter sp. NtRootC45 "{""strain"": ""NtRootC45"", ""collection_date"": ""2019-01"", ""isol_growth_condt"": ""missing"", ""ref_biomaterial"": ""missing"", ""organism"": ""Arthrobacter sp. NtRootC45"", ""env_broad_scale"": ""olant microbiome tobacco root"", ""locus_tag_prefix"": ""NtRootC45"", ""project_name"": ""Genome sequencing and assembly of Arthrobacter isolates derived from tobacco roots and metabolite-treated soils"", ""env_local_scale"": ""tobacco root"", ""NCBI_submission_package"": ""MIGS.ba.plant-associated.5.0"", ""host"": ""Nicotiana tabacum"", ""num_replicons"": ""not applicable"", ""geo_loc_name"": ""Japan:Kyoto, Kameoka"", ""env_medium"": ""root"", ""lat_lon"": ""34.9993438 N 135.5521939 E"", ""sample_name"": ""Arthrobacter sp. NtRootC45"", ""BioSampleModel"": ""MIGS.ba.plant-associated"", ""ENA-FIRST-PUBLIC"": ""2021-09-02"", ""ENA-LAST-UPDATE"": ""2022-04-05""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00283285&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00283285&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00283286 ena Success SAMD00283286 SAMD00283286 MATCH NtRootD5 Arthrobacter sp. NtRootD5 2830989 Keywords: GSC:MIxS;MIGS:5.0 NtRootD5 Nicotiana tabacum Japan:Kyoto, Kameoka 2019-01 Arthrobacter sp. NtRootD5 "{""strain"": ""NtRootD5"", ""collection_date"": ""2019-01"", ""isol_growth_condt"": ""missing"", ""ref_biomaterial"": ""missing"", ""organism"": ""Arthrobacter sp. NtRootD5"", ""env_broad_scale"": ""olant microbiome tobacco root"", ""locus_tag_prefix"": ""NtRootD5"", ""project_name"": ""Genome sequencing and assembly of Arthrobacter isolates derived from tobacco roots and metabolite-treated soils"", ""env_local_scale"": ""tobacco root"", ""NCBI_submission_package"": ""MIGS.ba.plant-associated.5.0"", ""host"": ""Nicotiana tabacum"", ""num_replicons"": ""not applicable"", ""geo_loc_name"": ""Japan:Kyoto, Kameoka"", ""env_medium"": ""root"", ""lat_lon"": ""34.9993438 N 135.5521939 E"", ""sample_name"": ""Arthrobacter sp. NtRootD5"", ""BioSampleModel"": ""MIGS.ba.plant-associated"", ""ENA-FIRST-PUBLIC"": ""2021-09-02"", ""ENA-LAST-UPDATE"": ""2022-04-05""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00283286&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00283286&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00283288 ena Success SAMD00283288 SAMD00283288 MATCH StoSoilB3 Arthrobacter sp. StoSoilB3 2830991 Keywords: GSC:MIxS;MIGS:5.0 StoSoilB3 not applicable Japan:Kyoto, Kameoka 2018-12 Arthrobacter sp. StoSoilB3 "{""strain"": ""StoSoilB3"", ""collection_date"": ""2018-12"", ""isol_growth_condt"": ""missing"", ""ref_biomaterial"": ""missing"", ""organism"": ""Arthrobacter sp. StoSoilB3"", ""env_broad_scale"": ""soil microbiome"", ""locus_tag_prefix"": ""StoSoilB3"", ""project_name"": ""Genome sequencing and assembly of Arthrobacter isolates derived from tobacco roots and metabolite-treated soils"", ""env_local_scale"": ""metabolite treated soil"", ""NCBI_submission_package"": ""MIGS.ba.plant-associated.5.0"", ""host"": ""not applicable"", ""num_replicons"": ""not applicable"", ""geo_loc_name"": ""Japan:Kyoto, Kameoka"", ""env_medium"": ""soil"", ""lat_lon"": ""34.9993438 N 135.5521939 E"", ""sample_name"": ""Arthrobacter sp. StoSoilB3"", ""BioSampleModel"": ""MIGS.ba.plant-associated"", ""ENA-FIRST-PUBLIC"": ""2021-09-02"", ""ENA-LAST-UPDATE"": ""2022-04-05""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00283288&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00283288&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format StoSoilB3 Arthrobacter sp. StoSoilB3 not applicable nan StoSoilB3 not applicable Japan:Kyoto, Kameoka Arthrobacter sp. StoSoilB3 2018-12 Environmental -> Terrestrial -> Soil -> Salt flat/Salt pan Environmental Terrestrial Soil Salt flat/Salt pan 7964_L4 4 0.2 GOLD 5-level classifier Basic japan; nan; stosoilb3; kyoto; applicable 10 SAMD00283299 ena Success SAMD00283299 SAMD00283299 MATCH NicSoilE8 Arthrobacter sp. NicSoilE8 2831002 Keywords: GSC:MIxS;MIGS:5.0 NicSoilE8 not applicable Japan:Kyoto, Kameoka 2020-02 Arthrobacter sp. NicSoilE8 "{""strain"": ""NicSoilE8"", ""collection_date"": ""2020-02"", ""isol_growth_condt"": ""missing"", ""ref_biomaterial"": ""missing"", ""organism"": ""Arthrobacter sp. NicSoilE8"", ""env_broad_scale"": ""soil microbiome"", ""locus_tag_prefix"": ""NicSoilE8"", ""project_name"": ""Genome sequencing and assembly of Arthrobacter isolates derived from tobacco roots and metabolite-treated soils"", ""env_local_scale"": ""metabolite treated soil"", ""NCBI_submission_package"": ""MIGS.ba.plant-associated.5.0"", ""host"": ""not applicable"", ""num_replicons"": ""not applicable"", ""geo_loc_name"": ""Japan:Kyoto, Kameoka"", ""env_medium"": ""soil"", ""lat_lon"": ""34.9993438 N 135.5521939 E"", ""sample_name"": ""Arthrobacter sp. NicSoilE8"", ""BioSampleModel"": ""MIGS.ba.plant-associated"", ""ENA-FIRST-PUBLIC"": ""2021-09-02"", ""ENA-LAST-UPDATE"": ""2022-04-05""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00283299&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00283299&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format NicSoilE8 Arthrobacter sp. NicSoilE8 not applicable nan NicSoilE8 not applicable Japan:Kyoto, Kameoka Arthrobacter sp. NicSoilE8 2020-02 Environmental -> Terrestrial -> Soil -> Salt flat/Salt pan Environmental Terrestrial Soil Salt flat/Salt pan 7964_L4 4 0.2 GOLD 5-level classifier Basic applicable; nicsoile8; japan; kameoka; kyoto 10 SAMD00317523 ena Success SAMD00317523 SAMD00317523 MATCH Escherichia coli strain FUJ80155 Escherichia coli 562 Keywords: GSC:MIxS;MIGS:5.0 missing Homo sapiens Japan:Aichi 2019-09-25 Escherichia coli "{""strain"": ""missing"", ""collection_date"": ""2019-09-25"", ""isol_growth_condt"": ""not applicable"", ""ref_biomaterial"": ""not applicable"", ""organism"": ""Escherichia coli"", ""env_broad_scale"": ""not applicable"", ""estimated_size"": ""5527700"", ""locus_tag_prefix"": ""FJMB80155"", ""project_name"": ""Whole genome sequense of carbapenemase producing Escherichia coli"", ""env_local_scale"": ""not applicable"", ""NCBI_submission_package"": ""MIGS.ba.5.0"", ""host_spec_range"": ""9606"", ""host"": ""Homo sapiens"", ""num_replicons"": ""8"", ""geo_loc_name"": ""Japan:Aichi"", ""env_medium"": ""not applicable"", ""lat_lon"": ""not applicable"", ""sample_name"": ""FUJ80155"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2021-09-01"", ""ENA-LAST-UPDATE"": ""2022-04-04""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00317523&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00317523&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00320097 ena Success SAMD00320097 SAMD00320097 MATCH Leptolinea sp. HRD-7 isolated from anaerobic sludge in an expanded granular sludge blanket reactor Leptolinea sp. HRD-7 2830982 Keywords: GSC:MIxS;MIGS:6.0 HRD-7 Japan 2019-12-01 Leptolinea sp. HRD-7 "{""strain"": ""HRD-7"", ""collection_date"": ""2019-12-01"", ""isol_growth_condt"": ""not applicable"", ""ref_biomaterial"": ""not applicable"", ""INSDC_secondary_accession"": ""DRS302596"", ""organism"": ""Leptolinea sp. HRD-7"", ""env_broad_scale"": ""mesophilic expanded granular sludge blanket reactor"", ""estimated_size"": ""3.79 Mbp"", ""locus_tag_prefix"": ""hrd7"", ""project_name"": ""Leptolinea sp. HRD-7 whole genome shotgun sequence"", ""env_local_scale"": ""anaerobic sludge"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""num_replicons"": ""1"", ""geo_loc_name"": ""Japan"", ""env_medium"": ""not applicable"", ""lat_lon"": ""34.7011 N 137.4075 E"", ""sample_name"": ""HRD-7"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2022-06-08"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS302596&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS302596&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format Leptolinea sp. HRD-7 isolated from anaerobic sludge in an expanded granular sludge blanket reactor Leptolinea sp. HRD-7 nan Leptolinea sp. HRD-7 isolated from anaerobic sludge in an expanded granular sludge blanket reactor nan Japan Leptolinea sp. HRD-7 2019-12-01 Engineered -> Bioreactor -> UASB (Upflow anaerobic sludge blanket) -> Sludge -> Granular sludge Engineered Bioreactor UASB (Upflow anaerobic sludge blanket) Sludge Granular sludge 8150_L5 5 0.321 GOLD 5-level classifier Fair silt; ooze; hrd; mud; deposit 21 SAMD00330105 ena Success SAMD00330105 SAMD00330105 MATCH Cutibacterium modestum clinical isolate KB17-24694 Cutibacterium modestum 2559073 Keywords: GSC:MIxS;MIGS:5.0 missing Homo sapiens Japan:Kobe 2017 Cutibacterium modestum "{""strain"": ""missing"", ""collection_date"": ""2017"", ""isol_growth_condt"": ""not applicable"", ""ref_biomaterial"": ""not applicable"", ""organism"": ""Cutibacterium modestum"", ""env_broad_scale"": ""Homo sapiens"", ""locus_tag_prefix"": ""KB1"", ""project_name"": ""not applicable"", ""env_local_scale"": ""vertebrate"", ""NCBI_submission_package"": ""MIGS.ba.human-associated.5.0"", ""host"": ""Homo sapiens"", ""num_replicons"": ""not applicable"", ""geo_loc_name"": ""Japan:Kobe"", ""env_medium"": ""not applicable"", ""lat_lon"": ""not applicable"", ""sample_name"": ""KB17-24694"", ""BioSampleModel"": ""MIGS.ba.human-associated"", ""ENA-FIRST-PUBLIC"": ""2021-06-28"", ""ENA-LAST-UPDATE"": ""2022-04-05""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00330105&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00330105&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00319502 ena Success SAMD00319502 SAMD00319502 MATCH Comamonas testosteroni YAZ2 Comamonas testosteroni 285 Keywords: GSC:MIxS;MIGS:6.0 YAZ2 Japan:Yamagata, Yonezawa 2011 Comamonas testosteroni "{""strain"": ""YAZ2"", ""INSDC_secondary_accession"": ""DRS201485"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Comamonas testosteroni"", ""project_name"": ""Characterization of aerobic polychlorinated biphenyl-degrading bacteria isolat ed from the Tohoku region of Japan"", ""collection_date"": ""2011"", ""sample_name"": ""YAZ2"", ""geo_loc_name"": ""Japan:Yamagata, Yonezawa"", ""locus_tag_prefix"": ""CTYAZ2"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2021-08-10"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS201485&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS201485&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00391124 ena Success SAMD00391124 SAMD00391124 MATCH Draft genome of strain Enterobacter cloacae 0102-4p-1 Enterobacter cloacae 550 Keywords: GSC:MIxS;MIGS:6.0 0102-4P-1 Enterobacter cloacae "{""strain"": ""0102-4P-1"", ""isolate"": ""homogenised shrimp"", ""INSDC_secondary_accession"": ""DRS208177"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""organism"": ""Enterobacter cloacae"", ""project_name"": ""Study on the prevalence of antibiotic resistance in foodborne bacterial pathogens in southern Vietnam"", ""biomaterial_provider"": ""2020/1/20"", ""sample_name"": ""Enterobacter cloacae 0102-4P-1"", ""locus_tag_prefix"": ""ECV0102"", ""env_medium"": ""Japan"", ""env_local_scale"": ""homogenised shrimp"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2021-07-14"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS208177&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS208177&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format homogenised shrimp SAMD00047014 ena Success SAMD00047014 SAMD00047014 MATCH Vibrio halioticoli draft genome Vibrio halioticoli 71388 Keywords: GSC:MIxS;MIGS:6.0 IAM 14596 Japan missing Vibrio halioticoli "{""strain"": ""IAM 14596"", ""collection_date"": ""missing"", ""isol_growth_condt"": ""9731299"", ""ref_biomaterial"": ""missing"", ""type-material"": ""type strain of Vibrio halioticoli"", ""organism"": ""Vibrio halioticoli"", ""env_broad_scale"": ""the gut of abalone"", ""locus_tag_prefix"": ""vhal"", ""type_status"": ""type strain"", ""project_name"": ""Vibrionaceae systematics"", ""env_local_scale"": ""gut"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""num_replicons"": ""3"", ""geo_loc_name"": ""Japan"", ""trophic_level"": ""heterotroph"", ""env_medium"": ""gut content"", ""lat_lon"": ""missing"", ""sample_name"": ""Vibrio halioticoli"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2018-08-24"", ""ENA-LAST-UPDATE"": ""2022-04-05""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00047014&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00047014&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00389785 ena Success SAMD00389785 SAMD00389785 MATCH Enterobacter cloacae SL264 Enterobacter cloacae 550 Keywords: GSC:MIxS;MIGS:5.0 Enterobacter cloacae SL264 Homo sapiens Japan:Tokyo 2018-04-25 Enterobacter cloacae "{""strain"": ""Enterobacter cloacae SL264"", ""collection_date"": ""2018-04-25"", ""isol_growth_condt"": ""not applicable"", ""ref_biomaterial"": ""missing"", ""organism"": ""Enterobacter cloacae"", ""env_broad_scale"": ""not applicable"", ""locus_tag_prefix"": ""SL264"", ""project_name"": ""A transferrable IncL/M plasmid harboring IMP-1"", ""env_local_scale"": ""not applicable"", ""health_disease_stat"": ""Pancreatitis"", ""NCBI_submission_package"": ""MIGS.ba.human-associated.5.0"", ""host"": ""Homo sapiens"", ""num_replicons"": ""missing"", ""geo_loc_name"": ""Japan:Tokyo"", ""env_medium"": ""Pancreatic fluid"", ""lat_lon"": ""not applicable"", ""biomaterial_provider"": ""St. Luke's International Hospital, Tokyo"", ""sample_name"": ""SL264"", ""BioSampleModel"": ""MIGS.ba.human-associated"", ""ENA-FIRST-PUBLIC"": ""2021-10-01"", ""ENA-LAST-UPDATE"": ""2022-04-05""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00389785&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00389785&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00389787 ena Success SAMD00389787 SAMD00389787 MATCH Klebsiella aerogenes SL269 Klebsiella aerogenes 548 Keywords: GSC:MIxS;MIGS:5.0 Klebsiella aerogenes SL269 Homo sapiens Japan:Tokyo 2018-07-23 Klebsiella aerogenes "{""strain"": ""Klebsiella aerogenes SL269"", ""collection_date"": ""2018-07-23"", ""isol_growth_condt"": ""not applicable"", ""ref_biomaterial"": ""missing"", ""organism"": ""Klebsiella aerogenes"", ""env_broad_scale"": ""not applicable"", ""locus_tag_prefix"": ""SL269"", ""project_name"": ""A transferrable IncL/M plasmid harboring IMP-1"", ""env_local_scale"": ""not applicable"", ""health_disease_stat"": ""Bacteremia"", ""NCBI_submission_package"": ""MIGS.ba.human-associated.5.0"", ""host"": ""Homo sapiens"", ""num_replicons"": ""missing"", ""geo_loc_name"": ""Japan:Tokyo"", ""env_medium"": ""Blood"", ""lat_lon"": ""not applicable"", ""biomaterial_provider"": ""St. Luke's International Hospital, Tokyo"", ""sample_name"": ""SL269"", ""BioSampleModel"": ""MIGS.ba.human-associated"", ""ENA-FIRST-PUBLIC"": ""2021-10-01"", ""ENA-LAST-UPDATE"": ""2022-04-05""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00389787&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00389787&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00333514 ena Success SAMD00333514 SAMD00333514 MATCH Clostridium perfringens sp. OS1 Clostridium perfringens 1502 Keywords: GSC:MIxS;MIGS:6.0 OS1 Homo sapiens Japan:Osaka, Osaka Institute of Public Health 2009-08 Clostridium perfringens "{""strain"": ""OS1"", ""collection_date"": ""2009-08"", ""isol_growth_condt"": ""unpublished"", ""ref_biomaterial"": ""unpublished"", ""INSDC_secondary_accession"": ""DRS239739"", ""organism"": ""Clostridium perfringens"", ""env_broad_scale"": ""anthropogenic terrestrial biome"", ""locus_tag_prefix"": ""CPBEC1"", ""project_name"": ""Genome sequencing of Clostridium perfringens strains carrying a novel binary enterotoxin gene bec"", ""env_local_scale"": ""anthropogenic geographic feature"", ""NCBI_submission_package"": ""MIGS.ba.human-gut.6.0"", ""host"": ""Homo sapiens"", ""num_replicons"": ""1"", ""geo_loc_name"": ""Japan:Osaka, Osaka Institute of Public Health"", ""env_medium"": ""feces"", ""lat_lon"": ""34.6798339 N 135.5343318 E"", ""sample_name"": ""OS1"", ""BioSampleModel"": ""MIGS.ba.human-gut"", ""ENA-FIRST-PUBLIC"": ""2022-05-16"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS239739&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS239739&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00333515 ena Success SAMD00333515 SAMD00333515 MATCH Clostridium perfringens sp. TS1 Clostridium perfringens 1502 Keywords: GSC:MIxS;MIGS:6.0 TS1 Homo sapiens Japan:Osaka, Osaka Institute of Public Health 2010-01 Clostridium perfringens "{""strain"": ""TS1"", ""collection_date"": ""2010-01"", ""isol_growth_condt"": ""unpublished"", ""ref_biomaterial"": ""unpublished"", ""INSDC_secondary_accession"": ""DRS239740"", ""organism"": ""Clostridium perfringens"", ""env_broad_scale"": ""anthropogenic terrestrial biome"", ""locus_tag_prefix"": ""CPBEC2"", ""project_name"": ""Genome sequencing of Clostridium perfringens strains carrying a novel binary enterotoxin gene bec"", ""env_local_scale"": ""anthropogenic geographic feature"", ""NCBI_submission_package"": ""MIGS.ba.human-gut.6.0"", ""host"": ""Homo sapiens"", ""num_replicons"": ""1"", ""geo_loc_name"": ""Japan:Osaka, Osaka Institute of Public Health"", ""env_medium"": ""feces"", ""lat_lon"": ""34.6798339 N 135.5343318 E"", ""sample_name"": ""TS1"", ""BioSampleModel"": ""MIGS.ba.human-gut"", ""ENA-FIRST-PUBLIC"": ""2022-05-16"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS239740&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS239740&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00333516 ena Success SAMD00333516 SAMD00333516 MATCH Clostridium perfringens sp. O13-19 Clostridium perfringens 1502 Keywords: GSC:MIxS;MIGS:6.0 O13-19 Homo sapiens Japan:Osaka, Osaka Institute of Public Health 2013-01 Clostridium perfringens "{""strain"": ""O13-19"", ""collection_date"": ""2013-01"", ""isol_growth_condt"": ""unpublished"", ""ref_biomaterial"": ""unpublished"", ""INSDC_secondary_accession"": ""DRS239741"", ""organism"": ""Clostridium perfringens"", ""env_broad_scale"": ""anthropogenic terrestrial biome"", ""locus_tag_prefix"": ""CPBEC3"", ""project_name"": ""Genome sequencing of Clostridium perfringens strains carrying a novel binary enterotoxin gene bec"", ""env_local_scale"": ""anthropogenic geographic feature"", ""NCBI_submission_package"": ""MIGS.ba.human-gut.6.0"", ""host"": ""Homo sapiens"", ""num_replicons"": ""1"", ""geo_loc_name"": ""Japan:Osaka, Osaka Institute of Public Health"", ""env_medium"": ""feces"", ""lat_lon"": ""34.6798339 N 135.5343318 E"", ""sample_name"": ""O13-19"", ""BioSampleModel"": ""MIGS.ba.human-gut"", ""ENA-FIRST-PUBLIC"": ""2022-05-16"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS239741&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS239741&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00333517 ena Success SAMD00333517 SAMD00333517 MATCH Clostridium perfringens sp. A18-256 Clostridium perfringens 1502 Keywords: GSC:MIxS;MIGS:6.0 A18-256 Homo sapiens Japan:Aichi, Aichi Prefectural Institute of Public Health 2018-10 Clostridium perfringens "{""strain"": ""A18-256"", ""collection_date"": ""2018-10"", ""isol_growth_condt"": ""unpublished"", ""ref_biomaterial"": ""unpublished"", ""INSDC_secondary_accession"": ""DRS239742"", ""organism"": ""Clostridium perfringens"", ""env_broad_scale"": ""anthropogenic terrestrial biome"", ""locus_tag_prefix"": ""CPBEC4"", ""project_name"": ""Genome sequencing of Clostridium perfringens strains carrying a novel binary enterotoxin gene bec"", ""env_local_scale"": ""anthropogenic geographic feature"", ""NCBI_submission_package"": ""MIGS.ba.human-gut.6.0"", ""host"": ""Homo sapiens"", ""num_replicons"": ""1"", ""geo_loc_name"": ""Japan:Aichi, Aichi Prefectural Institute of Public Health"", ""env_medium"": ""feces"", ""lat_lon"": ""35.202552 N 136.9234301 E"", ""sample_name"": ""A18-256"", ""BioSampleModel"": ""MIGS.ba.human-gut"", ""ENA-FIRST-PUBLIC"": ""2022-05-16"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS239742&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS239742&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00333518 ena Success SAMD00333518 SAMD00333518 MATCH Clostridium perfringens sp. A19-1 Clostridium perfringens 1502 Keywords: GSC:MIxS;MIGS:6.0 A19-1 Magallana gigas Japan:Aichi, Aichi Prefectural Institute of Public Health 2019-01 Clostridium perfringens "{""strain"": ""A19-1"", ""collection_date"": ""2019-01"", ""isol_growth_condt"": ""unpublished"", ""ref_biomaterial"": ""unpublished"", ""INSDC_secondary_accession"": ""DRS239743"", ""organism"": ""Clostridium perfringens"", ""env_broad_scale"": ""ocean biome"", ""locus_tag_prefix"": ""CPBEC5"", ""project_name"": ""Genome sequencing of Clostridium perfringens strains carrying a novel binary enterotoxin gene bec"", ""env_local_scale"": ""ocean"", ""NCBI_submission_package"": ""MIGS.ba.human-gut.6.0"", ""host"": ""Magallana gigas"", ""num_replicons"": ""1"", ""geo_loc_name"": ""Japan:Aichi, Aichi Prefectural Institute of Public Health"", ""env_medium"": ""oysters"", ""lat_lon"": ""35.202552 N 136.9234301 E"", ""sample_name"": ""A19-1"", ""BioSampleModel"": ""MIGS.ba.human-gut"", ""ENA-FIRST-PUBLIC"": ""2022-05-16"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS239743&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS239743&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00392805 ena Success SAMD00392805 SAMD00392805 MATCH Calothrix sp. PCC 7716 Calothrix sp. PCC 7716 2853227 Keywords: GSC:MIxS;MIGS:6.0 PCC 7716 India Calothrix sp. PCC 7716 "{""strain"": ""PCC 7716"", ""isol_growth_condt"": ""Sinclair, C. and Whitton, B. (1977) Influence of nutrient deficiency on hair formation in the Rivulariaceae. British Phycological Journal 12: 297-313."", ""ref_biomaterial"": ""Sinclair, C. and Whitton, B. (1977) Influence of nutrient deficiency on hair formation in the Rivulariaceae. British Phycological Journal 12: 297-313."", ""INSDC_secondary_accession"": ""DRS201486"", ""organism"": ""Calothrix sp. PCC 7716"", ""biomaterial_provider"": ""PCC"", ""sample_name"": ""Calothrix sp. PCC 7716"", ""geo_loc_name"": ""India"", ""locus_tag_prefix"": ""CAL7716"", ""estimated_size"": ""12.4Mbp"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""project_name"": ""Complete genome sequencing of Calothrix sp. PCC 7716"", ""num_replicons"": ""10"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2021-08-20"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS201486&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS201486&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format Calothrix sp. PCC 7716 Calothrix sp. PCC 7716 nan Calothrix sp. PCC 7716 nan India Calothrix sp. PCC 7716 nan Host-associated -> Mammals: Human -> Abdominal/Peritoneal cavity -> Ascites -> Malignant ascites Host-associated Mammals: Human Abdominal/Peritoneal cavity Ascites Malignant ascites 6168_L5 5 0.175 GOLD 5-level classifier Basic india; nan; calothrix; pcc 12 SAMD00248604 ena Success SAMD00248604 SAMD00248604 MATCH MRCP1333 shotgun sequence Pseudomonas paralcaligenes 2772558 Keywords: GSC:MIxS;MIGS:6.0 MRCP1333 Homo sapiens Japan:Tokyo, Musashino-city 2019-02-13 Pseudomonas paralcaligenes "{""strain"": ""MRCP1333"", ""isol_growth_condt"": ""https://www.ncbi.nlm.nih.gov/books/NBK8326/"", ""ref_biomaterial"": ""10.1046"", ""INSDC_secondary_accession"": ""DRS152731"", ""organism"": ""Pseudomonas paralcaligenes"", ""collection_date"": ""2019-02-13"", ""isolation_source"": ""human fecal sample"", ""sample_name"": ""MRCP1333"", ""env_broad_scale"": ""Humind subtropical climate"", ""geo_loc_name"": ""Japan:Tokyo, Musashino-city"", ""locus_tag_prefix"": ""MRCP1333"", ""env_local_scale"": ""city"", ""type_material"": ""type strain of Pseudomonas paralcaligenes"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""lat_lon"": ""35.697 N 139.54787 E"", ""project_name"": ""Whole genome sequence of Pseudomonas sp."", ""host"": ""Homo sapiens"", ""num_replicons"": ""1"", ""env_medium"": ""human fecal sample"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2020-09-23"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS152731&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS152731&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format human fecal sample SAMD00414017 ena Success SAMD00414017 SAMD00414017 MATCH Whole genome sequence of Acinetobacter baumannii OCU-Ac20 Acinetobacter baumannii 470 This strain is clinical isolate and carbapenemase-resistant. OCU-Ac20 Homo sapiens Japan:Osaka 2016-08-20 Acinetobacter baumannii "{""strain"": ""OCU-Ac20"", ""isol_growth_condt"": ""https://www.atcc.org/Products/All/19606.aspx#culturemethod"", ""INSDC_secondary_accession"": ""DRS276267"", ""rel_to_oxygen"": ""aerobe"", ""organism"": ""Acinetobacter baumannii"", ""biomaterial_provider"": ""Osaka City University Hospital"", ""biotic_relationship"": ""free living"", ""collection_date"": ""2016-08-20"", ""sample_name"": ""Acinetobacter baumannii OCU-Ac20"", ""geo_loc_name"": ""Japan:Osaka"", ""locus_tag_prefix"": ""OCUAc20"", ""env_local_scale"": ""Pharyngeal secretions"", ""estimated_size"": ""4.1 Mb"", ""NCBI_submission_package"": ""MIGS.ba.human-associated.6.0"", ""lat_lon"": ""34.6467 N 135.5088 E"", ""project_name"": ""Whole genome sequence of clinical-isolate Acinetobacter baumannii"", ""host_spec_range"": ""9606"", ""host"": ""Homo sapiens"", ""num_replicons"": ""4"", ""BioSampleModel"": ""MIGS.ba.human-associated"", ""ENA-FIRST-PUBLIC"": ""2023-01-16"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS276267&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS276267&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00439043 ena Success SAMD00439043 SAMD00439043 MATCH Cutibacterium acnes TP-CU411 chromosome Cutibacterium acnes 1747 Keywords: GSC:MIxS;MIGS:6.0 TP-CU411 Homo sapiens 2014-03-28 Cutibacterium acnes "{""strain"": ""TP-CU411"", ""INSDC_secondary_accession"": ""DRS227907"", ""NCBI_submission_package"": ""MIGS.ba.human-associated.6.0"", ""organism"": ""Cutibacterium acnes"", ""collection_date"": ""2014-03-28"", ""sample_name"": ""Cutibacterium acnes TP-CU411 chromosome"", ""env_broad_scale"": ""Patients with acne vulgaris"", ""host"": ""Homo sapiens"", ""locus_tag_prefix"": ""TPCU411"", ""env_local_scale"": ""pustule"", ""BioSampleModel"": ""MIGS.ba.human-associated"", ""ENA-FIRST-PUBLIC"": ""2022-02-04"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS227907&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS227907&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00439256 ena Success SAMD00439256 SAMD00439256 MATCH Draft genome sequence of Pseudomonas syringae pv. theae SUPP68 Pseudomonas syringae pv. theae 103985 Keywords: GSC:MIxS;MIGS:6.0 SUPP68 Camellia sinensis Japan:Shizuoka 1983-09-19 Pseudomonas syringae pv. theae "{""strain"": ""SUPP68"", ""INSDC_secondary_accession"": ""DRS279374"", ""rel_to_oxygen"": ""aerobe"", ""organism"": ""Pseudomonas syringae pv. theae"", ""biotic_relationship"": ""parasite"", ""collection_date"": ""1983-09-19"", ""sample_name"": ""Pseudomonas_syringae_pv._theae_SUPP68"", ""geo_loc_name"": ""Japan:Shizuoka"", ""locus_tag_prefix"": ""PSTH68"", ""pathogenicity"": ""The bacterial shoot blight of tea"", ""estimated_size"": ""6.4 Mb"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""project_name"": ""Draft genome sequence of Pseudomonas syringae pv. theae SUPP68"", ""host_spec_range"": ""542762"", ""host"": ""Camellia sinensis"", ""pathovar"": ""theae"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2023-02-10"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS279374&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS279374&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00442893 ena Success SAMD00442893 SAMD00442893 MATCH Draft genome sequence of Pseudomonas syringae pv. theae SUPP1771 Pseudomonas syringae pv. theae 103985 Keywords: GSC:MIxS;MIGS:6.0 SUPP1771 Camellia sinensis Japan:Shizuoka 1998-02-24 Pseudomonas syringae pv. theae "{""strain"": ""SUPP1771"", ""INSDC_secondary_accession"": ""DRS283138"", ""rel_to_oxygen"": ""aerobe"", ""organism"": ""Pseudomonas syringae pv. theae"", ""biotic_relationship"": ""parasite"", ""collection_date"": ""1998-02-24"", ""sample_name"": ""Pseudomonas_syringae_pv._theae_SUPP1771"", ""geo_loc_name"": ""Japan:Shizuoka"", ""locus_tag_prefix"": ""PSTH1771"", ""pathogenicity"": ""The bacterial shoot blight of tea"", ""estimated_size"": ""6.4 Mb"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""project_name"": ""Draft genome sequence of Pseudomonas syringae pv. theae SUPP1771"", ""host_spec_range"": ""542762"", ""host"": ""Camellia sinensis"", ""pathovar"": ""theae"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2023-03-07"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS283138&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS283138&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00282208 ena Success SAMD00282208 SAMD00282208 MATCH Annamia dubia sp. Annamia dubia NIES-4383 2759045 Keywords: GSC:MIxS;MIGS:6.0 NIES-4383 Japan:Lake Kasumigaura 2015-11-11 Annamia dubia NIES-4383 "{""strain"": ""NIES-4383"", ""collection_date"": ""2015-11-11"", ""isol_growth_condt"": ""10.5507/fot.2021.003"", ""type-material"": ""reference strain of Annamia dubia"", ""INSDC_secondary_accession"": ""DRS318052"", ""organism"": ""Annamia dubia NIES-4383"", ""env_broad_scale"": ""bacteria"", ""locus_tag_prefix"": ""Anndu"", ""project_name"": ""NBRP, AMED and JSPS KAKENHI"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""num_replicons"": ""1"", ""geo_loc_name"": ""Japan:Lake Kasumigaura"", ""lat_lon"": ""36.03583333 N 140.40361111 E"", ""biomaterial_provider"": ""NIES"", ""sample_name"": ""Annamia sp. NIES4383"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2023-08-01"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS318052&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS318052&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format Annamia dubia sp. Annamia dubia NIES-4383 nan Annamia dubia sp. nan Japan:Lake Kasumigaura Annamia dubia NIES-4383 2015-11-11 Environmental -> Aquatic -> Freshwater -> Pond -> Storm water pond Environmental Aquatic Freshwater Pond Storm water pond 8518_L5 5 0.283 GOLD 5-level classifier Basic sweet water; nan; annamia; dubia; freshwater 11 SAMD00446302 ena Success SAMD00446302 SAMD00446302 MATCH Providencia rettgeri NR1418 Providencia rettgeri 587 Keywords: GSC:MIxS;MIGS:5.0 NR1418 Homo sapiens Japan 2015 Providencia rettgeri "{""strain"": ""NR1418"", ""collection_date"": ""2015"", ""isol_growth_condt"": ""missing"", ""ref_biomaterial"": ""missing"", ""organism"": ""Providencia rettgeri"", ""env_broad_scale"": ""missing"", ""locus_tag_prefix"": ""PrNR1418"", ""env_local_scale"": ""missing"", ""NCBI_submission_package"": ""MIGS.ba.human-associated.5.0"", ""host"": ""Homo sapiens"", ""num_replicons"": ""missing"", ""geo_loc_name"": ""Japan"", ""env_medium"": ""missing"", ""lat_lon"": ""missing"", ""sample_name"": ""NR1418"", ""BioSampleModel"": ""MIGS.ba.human-associated"", ""ENA-FIRST-PUBLIC"": ""2022-03-07"", ""ENA-LAST-UPDATE"": ""2022-03-07""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00446302&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SAMD00446302&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format SAMD00446047 ena Success SAMD00446047 SAMD00446047 MATCH Draft genome sequence of Acidovorax sp. SUPP2522 Acidovorax sp. SUPP2522 511900 Keywords: GSC:MIxS;MIGS:6.0 SUPP2522 Hydrangea macrophylla Japan:Shizuoka 2007-05-24 Acidovorax sp. SUPP2522 "{""strain"": ""SUPP2522"", ""INSDC_secondary_accession"": ""DRS284529"", ""rel_to_oxygen"": ""aerobe"", ""organism"": ""Acidovorax sp. SUPP2522"", ""biotic_relationship"": ""parasite"", ""collection_date"": ""2007-05-24"", ""sample_name"": ""Acidovorax_sp._SUPP2522"", ""geo_loc_name"": ""Japan:Shizuoka"", ""locus_tag_prefix"": ""AVHY2522"", ""pathogenicity"": ""The bacterial black leaf spot of hydrangea"", ""estimated_size"": ""5.5 Mb"", ""NCBI_submission_package"": ""MIGS.ba.6.0"", ""project_name"": ""Draft genome sequence of Acidovorax sp. SUPP2522"", ""host_spec_range"": ""23109"", ""host"": ""Hydrangea macrophylla"", ""BioSampleModel"": ""MIGS.ba"", ""ENA-FIRST-PUBLIC"": ""2023-03-17"", ""ENA-LAST-UPDATE"": ""2024-06-02""}" ENA-FASTQ-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS284529&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes; ENA-SUBMITTED-FILES: https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRS284529&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format