biosample_accession scaffold_l50 ani_submitted_species biosample_organism_infraspecific_strain best_ani_match_assembly_coverage biosample_organism_organism_name checkm_species_tax_id biosample_isolate_name_alias biosample_dev_stage biosample_organism_common_name biosample_source_type paired_assembly_changed bioproject_lineage_1_1_accession contig_l50 paired_assembly_status ani_comment annotation_method busco_busco_ver scaffold_n50 comments best_ani_match_category biosample_organism_infraspecific_sex organism_organism_name organism_common_name suppression_reason biosample_identified_by annotation_release_date biosample_attr_serovar biosample_serovar checkm_marker_set_rank annotation_report_url biosample_attr_host gene_counts_protein_coding biosample_attr_scientific_name ani_submitted_organism biosample_lat_lon organism_infraspecific_breed biosample_sample_id_1_value biosample_cultivar annotation_pipeline annotation_provider biosample_collection_date checkm_version biosample_submission_date checkm_completeness blast_url total_ungapped_length submitted_ani_match_assembly_coverage refseq_category organism_tax_id gene_counts_total biosample_attr_common_name biosample_last_updated biosample_isolate diploid_role total_sequence_length biosample_attr_subject_id contig_n50 atgc_count organism_pangolin_classification biosample_isolation_source biosample_host grouping_method biosample_description_comment submission_date paired_assembly_only_refseq checkm_marker_set biosample_attr_host_health_state genome_note_1 gene_counts_pseudogene total_number_of_chromosomes biosample_attr_substrain biosample_owner_name genome_coverage paired_assembly_only_genbank best_ani_match_assembly annotation_name bioproject_lineage_1_1_parent_accession sequencing_tech synonym best_ani_match_organism_name organism_infraspecific_sex organism_infraspecific_ecotype gene_counts_other current_accession atypical_is_atypical submitted_ani_match_category biosample_sex biosample_attr_ArrayExpress_SPECIES biosample_attr_isolation_source best_ani_match_ani biosample_attr_ENA_CHECKLIST type_material_display_text description ani_taxonomy_check_status gc_percent submitted_ani_match_organism_name busco_total_count checkm_completeness_percentile wgs_master_wgs_url biosample_attr_ENA_FIRST_PUBLIC accession number_of_organelles assembly_type biosample_organism_infraspecific_breed biosample_attr_INSDC_status biosample_sample_name best_ani_match_type_assembly_coverage biosample_organism_sci_name annotation_status checkm_contamination number_of_contigs biosample_status_when biosample_attr_isolate assembly_long_name biosample_organism_strain linked_assembly submitted_ani_match_assembly gc_count paired_assembly_refseq_genbank_are_different gene_counts_non_coding assembly_name biosample_attr_Submitter_Id biosample_collected_by biosample_ifsac_category biosample_sample_id_1_label biosample_attr_geo_loc_name biosample_description_title biosample_serotype biosample_age biosample_attr_External_Id biosample_organism_infraspecific_ecotype biosample_organism_tax_id biosample_host_disease paired_assembly_accession biosample_package busco_busco_lineage busco_missing submitted_ani_match_type_assembly_coverage busco_single_copy biosample_sample_id_1_db paired_assembly_differences biosample_attr_unknown paired_accession ani_category biosample_status biosample_attr_ENA_LAST_UPDATE biosample_attr_strain gaps_between_scaffolds_count bioproject_accession paired_assembly_annotation_name submitter annotation_release_version biosample_attr_INSDC_center_name biosample_breed number_of_scaffolds biosample_attr_anonymized_name organism_infraspecific_isolate biosample_organism_infraspecific_isolate organism_infraspecific_cultivar biosample_attr_INSDC_last_update type_material_label biosample_publication_date biosample_organism_pangolin_classification biosample_biomaterial_provider busco_fragmented biosample_attr_supplier_name wgs_wgs_contigs_url biosample_tissue busco_complete biosample_attr_collection_date organism_infraspecific_strain annotation_software_version biosample_attr_INSDC_first_public paired_assembly_manual_diff biosample_ecotype assembly_method assembly_status organism_strain number_of_component_sequences biosample_attr_sample_name biosample_model_1 biosample_sub_species bioproject_lineage_1_1_title wgs_project_accession organism_sci_name assembly_level biosample_attr_ArrayExpress_Species source_database biosample_attr_taxon_id biosample_geo_loc_name release_date biosample_strain ani_match_status biosample_project_name biosample_organism_infraspecific_cultivar submitted_ani_match_ani busco_duplicated SAMEA685713 8 Streptococcus pneumoniae 95.5 Streptococcus pneumoniae 1313 PRJEB2102 8 current na 84488 type Streptococcus pneumoniae 2016-02-13 1 1 species Homo sapiens 2094 Streptococcus pneumoniae Streptococcus pneumoniae ERS005603 SC v1.2.4 2011-02-14T19:04:52.723 99.25 2103421 95.5 1313 2152 2024-02-05T21:29:32.000 2103421 84488 2103414 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900050495.1 type CSF 99.49 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/FIUK00000000.1 2010-03-05T17:06:16Z GCA_900050495.1 haploid public C12458-sc-2010-05-07-30609 95.16 0.31 38 2015-08-07T13:27:24 GCA_001457635.1 833595 58 4525_7#3 C12458-sc-2010-05-07-30609 Malawi 4525_7#3 SAMEA685713 1313 GCF_900050495.1 Generic.1.0 95.16 SRA GCF_900050495.1 category_na live 2018-03-09T09:59:22Z C12458 PRJEB2102 GCF_900050495.1-RS_2026_01_30 SC SC 38 30609 2018-03-09T09:59:22Z 2010-03-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIUK01 C12458 2010-03-05T17:06:16Z Prokka current 38 C12458-sc-2010-05-07-30609 Generic Streptococcus pneumoniae serotype 1 diversity FIUK01 Contig SOURCE_DATABASE_GENBANK Malawi 2016-02-13 C12458 species_match 99.49 SAMEA685713 8 Streptococcus pneumoniae 95.5 Streptococcus pneumoniae 1313 PRJEB2102 8 current na Best-placed reference protein set; GeneMarkS-2+ 84488 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-30 1 1 species Homo sapiens 1974 Streptococcus pneumoniae Streptococcus pneumoniae ERS005603 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq v1.2.4 2011-02-14T19:04:52.723 99.25 2103421 95.5 1313 2220 2024-02-05T21:29:32.000 2103421 84488 2103414 CSF Homo sapiens Streptococcus pneumoniae Disease 185 EBI 100 GCA_001457635.1 GCF_900050495.1-RS_2026_01_30 SLX Streptococcus pneumoniae GCF_900050495.1 type CSF 99.49 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/FIUK00000000.1 2010-03-05T17:06:16Z GCF_900050495.1 haploid public C12458-sc-2010-05-07-30609 95.16 0.31 38 2015-08-07T13:27:24 GCA_001457635.1 833595 61 4525_7#3 C12458-sc-2010-05-07-30609 Malawi 4525_7#3 SAMEA685713 1313 GCA_900050495.1 Generic.1.0 95.16 SRA GCA_900050495.1 category_na live 2018-03-09T09:59:22Z C12458 PRJEB2102 Annotation submitted by SC SC SC 38 30609 2018-03-09T09:59:22Z 2010-03-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIUK01 C12458 6.10 2010-03-05T17:06:16Z Prokka current 38 C12458-sc-2010-05-07-30609 Generic Streptococcus pneumoniae serotype 1 diversity FIUK01 Contig SOURCE_DATABASE_REFSEQ Malawi 2016-02-13 C12458 species_match 99.49 SAMEA104035591 2 Streptococcus pneumoniae 93.97 Streptococcus pneumoniae PRJEB3084 3 na 368942 type Streptococcus pneumoniae 2019-05-11 2 2 Homo sapiens 2019 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699484 SC 2013 2017-08-10T16:09:59.260 2027988 93.97 1313 2069 Streptococcus pneumoniae 2024-02-06T15:52:18.000 2027998 2245STDY6835666 368942 2027988 blood Homo sapiens IPD from large multi-isolate project ST1504 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901301565.1 type Streptococcus pneumoniae blood 98.71 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAXRQ000000000.1 2017-08-08T13:54:45Z GCA_901301565.1 haploid public ab022820-1f66-11e7-b93e-3c4a9275d6c8 90.27 16 2017-08-10T17:09:57.460 GCA_001457635.1 806266 50 22841_2#14 ab022820-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_2#14 SAMEA104035591 1313 Generic.1.0 90.27 SRA category_na live 2019-04-18T15:32:29Z GPSC96 PRJEB3084 SC SC 15 3052341 2019-04-18T15:32:29Z 2017-08-08T00:00:00.000 27029 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAXRQ01 2013 GPSC96 substr. ST1504 2017-08-08T13:54:45Z Prokka current 15 ab022820-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAXRQ01 Scaffold SOURCE_DATABASE_GENBANK Israel 2019-05-11 GPSC96 species_match 98.71 SAMEA104035934 3 Streptococcus pneumoniae 95.03 Streptococcus pneumoniae PRJEB3084 3 na 368132 type Streptococcus pneumoniae 2019-05-10 2 2 Homo sapiens 1964 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699827 SC 2007 2017-08-10T16:10:07.110 1990503 95.03 1313 2014 Streptococcus pneumoniae 2024-02-06T15:52:31.000 1990503 2245STDY6836013 368132 1990503 blood/CSF Homo sapiens IPD from large multi-isolate project ST1504 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901330245.1 type Streptococcus pneumoniae blood/CSF 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABBXD000000000.1 2017-08-08T13:54:43Z GCA_901330245.1 haploid public ca9de480-1f66-11e7-b93e-3c4a9275d6c8 89.61 13 2017-08-10T17:10:07.440 GCA_001457635.1 790978 50 22841_3#154 ca9de480-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_3#154 SAMEA104035934 1313 Generic.1.0 89.61 SRA category_na live 2019-04-18T15:32:32Z GPSC96 PRJEB3084 SC SC 13 3052688 2019-04-18T15:32:32Z 2017-08-08T00:00:00.000 10056 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABBXD01 2007 GPSC96 substr. ST1504 2017-08-08T13:54:43Z Prokka current 13 ca9de480-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABBXD01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-10 GPSC96 species_match 98.74 SAMEA104035875 3 Streptococcus pneumoniae 94.97 Streptococcus pneumoniae PRJEB3084 3 na 367639 type Streptococcus pneumoniae 2019-05-10 2 2 Homo sapiens 1970 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699768 SC 2006 2017-08-10T16:10:05.790 1991934 94.97 1313 2023 Streptococcus pneumoniae 2024-02-06T15:52:28.000 1991934 2245STDY6835953 367639 1991932 blood/CSF Homo sapiens IPD from large multi-isolate project ST1504 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901326055.1 type Streptococcus pneumoniae blood/CSF 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABBHB000000000.1 2017-08-08T13:54:44Z GCA_901326055.1 haploid public c458ab00-1f66-11e7-b93e-3c4a9275d6c8 89.61 16 2017-08-10T17:10:05.680 GCA_001457635.1 791483 53 22841_3#98 c458ab00-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_3#98 SAMEA104035875 1313 Generic.1.0 89.61 SRA category_na live 2019-04-18T15:32:32Z GPSC96 PRJEB3084 SC SC 16 3052628 2019-04-18T15:32:32Z 2017-08-08T00:00:00.000 9416 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABBHB01 2006 GPSC96 substr. ST1504 2017-08-08T13:54:44Z Prokka current 16 c458ab00-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABBHB01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-10 GPSC96 species_match 98.74 SAMEA104155128 3 Streptococcus pneumoniae 97.96 Streptococcus pneumoniae PRJEB3084 3 na 363576 type Streptococcus pneumoniae 2019-05-11 1 1 Homo sapiens 2033 Streptococcus pneumoniae Streptococcus pneumoniae ERS1814146 SC 2009 2017-08-10T16:10:44.010 2036083 97.96 1313 2083 Streptococcus pneumoniae 2024-02-06T15:52:00.000 2036134 2245STDY6655471 363576 2036072 blood Homo sapiens IPD from large multi-isolate project ST217 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901310445.1 type Streptococcus pneumoniae blood 99.47 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAYZK000000000.1 2017-08-08T13:54:42Z GCA_901310445.1 haploid public 9a9596e0-c37a-11e6-b158-3c4a9275d6c8 94.49 16 2017-08-10T17:10:57.723 GCA_001457635.1 809320 50 22027_1#154 9a9596e0-c37a-11e6-b158-3c4a9275d6c8 Israel 22027_1#154 SAMEA104155128 1313 Generic.1.0 94.49 SRA category_na live 2019-04-18T15:32:24Z GPSC2 PRJEB3084 SC SC 16 2869374 2019-04-18T15:32:24Z 2017-08-08T00:00:00.000 23852 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAYZK01 2009 GPSC2 substr. ST217 2017-08-08T13:54:42Z Prokka current 16 9a9596e0-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAYZK01 Scaffold SOURCE_DATABASE_GENBANK Israel 2019-05-11 GPSC2 species_match 99.47 SAMEA104035689 2 Streptococcus pneumoniae 95.0 Streptococcus pneumoniae PRJEB3084 2 na 355164 type Streptococcus pneumoniae 2019-05-10 2 2 Homo sapiens 1964 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699582 SC 2013 2017-08-10T16:10:01.490 1988485 95.0 1313 2014 Streptococcus pneumoniae 2024-02-06T15:52:18.000 1988485 2245STDY6835766 355164 1988485 blood Homo sapiens IPD from large multi-isolate project ST1504 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901311285.1 type Streptococcus pneumoniae blood 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAZCU000000000.1 2017-08-08T13:54:43Z GCA_901311285.1 haploid public b865e420-1f66-11e7-b93e-3c4a9275d6c8 89.49 12 2017-08-10T17:10:00.170 GCA_001457635.1 790341 50 22841_2#110 b865e420-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_2#110 SAMEA104035689 1313 Generic.1.0 89.49 SRA category_na live 2019-04-18T15:32:30Z GPSC96 PRJEB3084 SC SC 12 3052441 2019-04-18T15:32:30Z 2017-08-08T00:00:00.000 27063 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAZCU01 2013 GPSC96 substr. ST1504 2017-08-08T13:54:43Z Prokka current 12 b865e420-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAZCU01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-10 GPSC96 species_match 98.73 SAMEA104035747 2 Streptococcus pneumoniae 94.94 Streptococcus pneumoniae PRJEB3084 3 na 355303 type Streptococcus pneumoniae 2019-05-10 2 2 Homo sapiens 1969 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699640 SC 2005 2017-08-10T16:10:02.830 1992135 94.94 1313 2019 Streptococcus pneumoniae 2024-02-06T15:52:24.000 1992198 2245STDY6835824 333327 1992134 blood/CSF Homo sapiens IPD from large multi-isolate project ST1504 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901315585.1 type Streptococcus pneumoniae blood/CSF 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAZTB000000000.1 2017-08-08T13:54:42Z GCA_901315585.1 haploid public bac557f0-1f66-11e7-b93e-3c4a9275d6c8 89.6 17 2017-08-10T17:10:01.797 GCA_001457635.1 791537 50 22841_2#164 bac557f0-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_2#164 SAMEA104035747 1313 Generic.1.0 89.6 SRA category_na live 2019-04-18T15:32:31Z GPSC96 PRJEB3084 SC SC 16 3052499 2019-04-18T15:32:31Z 2017-08-08T00:00:00.000 8535 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAZTB01 2005 GPSC96 substr. ST1504 2017-08-08T13:54:42Z Prokka current 16 bac557f0-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAZTB01 Scaffold SOURCE_DATABASE_GENBANK Israel 2019-05-10 GPSC96 species_match 98.74 SAMEA104035706 3 Streptococcus pneumoniae 98.02 Streptococcus pneumoniae PRJEB3084 3 na 327130 type Streptococcus pneumoniae 2019-05-11 1 1 Homo sapiens 2026 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699599 SC 2014 2017-08-10T16:10:01.916 2033298 98.02 1313 2076 Streptococcus pneumoniae 2024-02-06T15:52:22.000 2033298 2245STDY6835783 327130 2033298 blood Homo sapiens IPD from large multi-isolate project ST217 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901312535.1 type Streptococcus pneumoniae blood 99.46 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAZHN000000000.1 2017-08-08T13:54:42Z GCA_901312535.1 haploid public b9264df0-1f66-11e7-b93e-3c4a9275d6c8 94.41 17 2017-08-10T17:10:00.650 GCA_001457635.1 808400 50 22841_2#126 b9264df0-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_2#126 SAMEA104035706 1313 Generic.1.0 94.41 SRA category_na live 2019-04-18T15:32:30Z GPSC2 PRJEB3084 SC SC 17 3052458 2019-04-18T15:32:30Z 2017-08-08T00:00:00.000 27500 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAZHN01 2014 GPSC2 substr. ST217 2017-08-08T13:54:42Z Prokka current 17 b9264df0-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAZHN01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-11 GPSC2 species_match 99.46 SAMEA104035310 3 Streptococcus pneumoniae 97.91 Streptococcus pneumoniae PRJEB3084 3 na 322731 type Streptococcus pneumoniae 2019-05-11 1 1 Homo sapiens 2030 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699203 SC 2011 2017-08-10T16:09:53.130 2034263 97.91 1313 2080 Streptococcus pneumoniae 2024-02-06T15:52:07.000 2034306 2245STDY6835395 322731 2034263 blood Homo sapiens IPD from large multi-isolate project ST217 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901286575.1 type Streptococcus pneumoniae blood 99.47 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAVME000000000.1 2017-08-08T13:54:43Z GCA_901286575.1 haploid public 9796d7e0-1f66-11e7-b93e-3c4a9275d6c8 94.35 24 2017-08-10T17:09:49.490 GCA_001457635.1 808704 50 22841_4#16 9796d7e0-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_4#16 SAMEA104035310 1313 Generic.1.0 94.35 SRA category_na live 2019-04-18T15:32:26Z GPSC2 PRJEB3084 SC SC 23 3052070 2019-04-18T15:32:26Z 2017-08-08T00:00:00.000 25206 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAVME01 2011 GPSC2 substr. ST217 2017-08-08T13:54:43Z Prokka current 23 9796d7e0-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAVME01 Scaffold SOURCE_DATABASE_GENBANK Israel 2019-05-11 GPSC2 species_match 99.47 SAMEA104035208 3 Streptococcus pneumoniae 97.94 Streptococcus pneumoniae PRJEB3084 3 na 313097 type Streptococcus pneumoniae 2019-05-11 1 1 Homo sapiens 2027 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699101 SC 2010 2017-08-10T16:09:50.970 2033169 97.94 1313 2077 Streptococcus pneumoniae 2024-02-06T15:51:59.000 2033169 2245STDY6835279 313097 2033163 blood Homo sapiens IPD from large multi-isolate project ST217 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901293805.1 type Streptococcus pneumoniae blood 99.47 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWNY000000000.1 2017-08-08T13:54:42Z GCA_901293805.1 haploid public 8a7247c0-1f66-11e7-b93e-3c4a9275d6c8 94.33 21 2017-08-10T17:09:46.623 GCA_001457635.1 808183 50 22841_1#15 8a7247c0-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_1#15 SAMEA104035208 1313 Generic.1.0 94.33 SRA category_na live 2019-04-18T15:32:25Z GPSC2 PRJEB3084 SC SC 21 3051954 2019-04-18T15:32:25Z 2017-08-08T00:00:00.000 24650 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWNY01 2010 GPSC2 substr. ST217 2017-08-08T13:54:42Z Prokka current 21 8a7247c0-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWNY01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-11 GPSC2 species_match 99.47 SAMEA104035621 3 Streptococcus pneumoniae 93.97 Streptococcus pneumoniae PRJEB3084 3 na 258791 type Streptococcus pneumoniae 2019-05-11 2 2 Homo sapiens 2018 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699514 SC 2013 2017-08-10T16:09:59.836 2028753 93.97 1313 2069 Streptococcus pneumoniae 2024-02-06T15:52:19.000 2028844 2245STDY6835697 258791 2028752 blood Homo sapiens IPD from large multi-isolate project ST1504 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901304385.1 type Streptococcus pneumoniae blood 98.71 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAYCF000000000.1 2017-08-08T13:54:41Z GCA_901304385.1 haploid public b11e2ec0-1f66-11e7-b93e-3c4a9275d6c8 90.31 13 2017-08-10T17:09:58.240 GCA_001457635.1 806556 51 22841_2#42 b11e2ec0-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_2#42 SAMEA104035621 1313 Generic.1.0 90.31 SRA category_na live 2019-04-18T15:32:29Z GPSC96 PRJEB3084 SC SC 12 3052372 2019-04-18T15:32:29Z 2017-08-08T00:00:00.000 27317 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAYCF01 2013 GPSC96 substr. ST1504 2017-08-08T13:54:41Z Prokka current 12 b11e2ec0-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAYCF01 Scaffold SOURCE_DATABASE_GENBANK Israel 2019-05-11 GPSC96 species_match 98.71 SAMEA104154987 4 Streptococcus pneumoniae 97.89 Streptococcus pneumoniae PRJEB3084 5 na 233930 type Streptococcus pneumoniae 2019-05-11 1 1 Homo sapiens 2032 Streptococcus pneumoniae Streptococcus pneumoniae ERS1814005 SC 2007 2017-08-10T16:10:40.836 2039652 97.89 1313 2082 Streptococcus pneumoniae 2024-02-06T15:51:54.000 2039662 2245STDY6655327 198955 2039647 blood Homo sapiens IPD from large multi-isolate project ST217 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901312705.1 type Streptococcus pneumoniae blood 99.47 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAZIC000000000.1 2017-08-08T13:54:43Z GCA_901312705.1 haploid public 876b2030-c37a-11e6-b158-3c4a9275d6c8 94.59 23 2017-08-10T17:10:53.567 GCA_001457635.1 810662 50 22114_6#12 876b2030-c37a-11e6-b158-3c4a9275d6c8 Israel 22114_6#12 SAMEA104154987 1313 Generic.1.0 94.59 SRA category_na live 2019-04-18T15:32:23Z GPSC2 PRJEB3084 SC SC 22 2869230 2019-04-18T15:32:23Z 2017-08-08T00:00:00.000 145702 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAZIC01 2007 GPSC2 substr. ST217 2017-08-08T13:54:43Z Prokka current 22 876b2030-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAZIC01 Scaffold SOURCE_DATABASE_GENBANK Israel 2019-05-11 GPSC2 species_match 99.47 SAMEA104035128 4 Streptococcus pneumoniae 97.94 Streptococcus pneumoniae PRJEB3084 4 na 193368 type Streptococcus pneumoniae 2019-05-11 1 1 Homo sapiens 2032 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699021 SC 2010 2017-08-10T16:09:49.340 2034035 97.94 1313 2082 Streptococcus pneumoniae 2024-02-06T15:52:01.000 2034050 2245STDY6835199 193368 2034030 blood Homo sapiens IPD from large multi-isolate project ST217 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901319185.1 type Streptococcus pneumoniae blood 99.47 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABAGQ000000000.1 2017-08-08T13:54:43Z GCA_901319185.1 haploid public 87228080-1f66-11e7-b93e-3c4a9275d6c8 94.37 23 2017-08-10T17:09:44.483 GCA_001457635.1 808583 50 22667_7#132 87228080-1f66-11e7-b93e-3c4a9275d6c8 Israel 22667_7#132 SAMEA104035128 1313 Generic.1.0 94.37 SRA category_na live 2019-04-18T15:32:25Z GPSC2 PRJEB3084 SC SC 22 3051874 2019-04-18T15:32:25Z 2017-08-08T00:00:00.000 24413 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABAGQ01 2010 GPSC2 substr. ST217 2017-08-08T13:54:43Z Prokka current 22 87228080-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABAGQ01 Scaffold SOURCE_DATABASE_GENBANK Israel 2019-05-11 GPSC2 species_match 99.47 SAMEA3506049 4 Streptococcus pneumoniae 95.55 Streptococcus pneumoniae PRJEB3084 5 na 196453 type Streptococcus pneumoniae 2019-05-15 1 1 Homo sapiens 2098 Streptococcus pneumoniae Streptococcus pneumoniae ERS813198 SC 2015 2016-06-15T09:06:44.356 2103806 95.55 1313 2151 Streptococcus pneumoniae 2024-02-06T15:57:51.000 2103944 185870 2103805 blood Homo sapiens Bacteremia from large multi-isolate project ST5012 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901332635.1 type blood 99.48 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABCGI000000000.1 2016-06-14T13:32:59Z GCA_901332635.1 haploid public GPS_MW_BNZ15Z-sc-2377547 95.23 34 2018-03-11T12:30:47 GCA_001457635.1 833977 53 19341_2#54 GPS_MW_BNZ15Z-sc-2377547 Malawi 19341_2#54 SAMEA3506049 1313 Generic.1.0 95.23 SRA category_na live 2019-04-18T16:00:58Z GPSC2 PRJEB3084 SC SC 32 2377547 2019-04-18T16:00:58Z 2016-06-14T00:00:00.000 GPS_MW_BNZ15Z https://www.ncbi.nlm.nih.gov/Traces/wgs/CABCGI01 2015 GPSC2 substr. ST5012 2016-06-14T13:32:59Z Prokka current 32 GPS_MW_BNZ15Z-sc-2377547 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABCGI01 Scaffold SOURCE_DATABASE_GENBANK Malawi 2019-05-15 GPSC2 species_match 99.48 SAMEA104035131 4 Streptococcus pneumoniae 91.93 Streptococcus pneumoniae PRJEB3084 4 na 176108 type Streptococcus pneumoniae 2019-05-12 1 1 Homo sapiens 2049 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699024 SC 2010 2017-08-10T16:09:49.406 2052639 91.93 1313 2102 Streptococcus pneumoniae 2024-02-06T15:51:57.000 2052639 2245STDY6835202 176108 2052638 blood Homo sapiens IPD from large multi-isolate project ST304 EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901290675.1 type Streptococcus pneumoniae blood 98.92 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWBV000000000.1 2017-08-08T13:54:45Z GCA_901290675.1 haploid public 874d3a00-1f66-11e7-b93e-3c4a9275d6c8 90.16 38 2017-08-10T17:09:44.567 GCA_001679515.1 811904 53 22667_7#135 874d3a00-1f66-11e7-b93e-3c4a9275d6c8 Israel 22667_7#135 SAMEA104035131 1313 Generic.1.0 90.16 SRA category_na live 2019-04-18T15:32:25Z GPSC31 PRJEB3084 SC SC 38 3051877 2019-04-18T15:32:25Z 2017-08-08T00:00:00.000 24467 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWBV01 2010 GPSC31 substr. ST304 2017-08-08T13:54:45Z Prokka current 38 874d3a00-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWBV01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-12 GPSC31 species_match 98.92 SAMEA4392442 6 Streptococcus pneumoniae 96.35 Streptococcus pneumoniae PRJEB3084 6 na 148774 type Streptococcus pneumoniae 2019-05-13 1 1 Homo sapiens 2053 Streptococcus pneumoniae Streptococcus pneumoniae ERS1303891 SC 2009 2016-12-21T09:12:16.850 2072292 96.35 1313 2105 Streptococcus pneumoniae 2024-02-06T15:51:05.000 2072333 148774 2072291 blood Homo sapiens Meningitis from large multi-isolate project ST303 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901295965.1 type blood 99.4 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWWE000000000.1 2016-12-20T09:21:18Z GCA_901295965.1 haploid public f93bc620-589e-11e6-9a3d-3c4a9275d6c8 94.58 30 2016-12-21T10:09:50.800 GCA_001457635.1 821196 52 20957_7#111 f93bc620-589e-11e6-9a3d-3c4a9275d6c8 Bangladesh 20957_7#111 SAMEA4392442 1313 Generic.1.0 94.58 SRA category_na live 2019-04-18T15:32:10Z GPSC2 PRJEB3084 SC SC 29 2738289 2019-04-18T15:32:10Z 2016-12-20T00:00:00.000 10628 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWWE01 2009 GPSC2 substr. ST303 2016-12-20T09:21:18Z Prokka current 29 f93bc620-589e-11e6-9a3d-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWWE01 Scaffold SOURCE_DATABASE_GENBANK Bangladesh 2019-05-13 GPSC2 species_match 99.4 SAMEA4036446 6 Streptococcus pneumoniae 97.32 Streptococcus pneumoniae PRJEB3084 6 na 120401 type Streptococcus pneumoniae 2019-05-12 1 1 Homo sapiens 2044 Streptococcus pneumoniae Streptococcus pneumoniae ERS1207556 SC 2014 2016-12-15T10:07:22.850 2050111 97.32 1313 2097 Streptococcus pneumoniae 2024-02-06T15:51:53.000 2050238 120401 2050104 blood Homo sapiens Bacteraemia from large multi-isolate project ST303 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901293625.1 type blood 99.49 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWNF000000000.1 2016-12-13T11:56:01Z GCA_901293625.1 haploid public 3c94bbc0-cfec-11e5-bc69-3c4a9275d6c6 94.51 35 2016-12-15T11:07:20.830 GCA_001457635.1 815552 53 20925_3#56 3c94bbc0-cfec-11e5-bc69-3c4a9275d6c6 India 20925_3#56 SAMEA4036446 1313 Generic.1.0 94.51 SRA category_na live 2019-04-18T15:32:22Z GPSC2 PRJEB3084 SC SC 33 2537202 2019-04-18T15:32:22Z 2016-12-13T00:00:00.000 PIDOPS_18 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWNF01 2014 GPSC2 substr. ST303 2016-12-13T11:56:01Z Prokka current 33 3c94bbc0-cfec-11e5-bc69-3c4a9275d6c6 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWNF01 Scaffold SOURCE_DATABASE_GENBANK India 2019-05-12 GPSC2 species_match 99.49 SAMEA104035409 6 Streptococcus pneumoniae 89.82 Streptococcus pneumoniae PRJEB3084 6 na 115463 type Streptococcus pneumoniae 2019-05-16 1 1 Homo sapiens 2139 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699302 SC 2011 2017-08-10T16:09:55.280 2108692 89.82 1313 2189 Streptococcus pneumoniae 2024-02-06T15:52:11.000 2108703 2245STDY6835483 115463 2108689 blood Homo sapiens IPD from large multi-isolate project ST304 EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901330875.1 type Streptococcus pneumoniae blood 98.91 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABBZO000000000.1 2017-08-08T13:54:43Z GCA_901330875.1 haploid public 9f7acd40-1f66-11e7-b93e-3c4a9275d6c8 90.51 44 2017-08-10T17:09:52.320 GCA_001679515.1 834200 50 22841_4#103 9f7acd40-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_4#103 SAMEA104035409 1313 Generic.1.0 90.51 SRA category_na live 2019-04-18T15:32:27Z GPSC31 PRJEB3084 SC SC 43 3052158 2019-04-18T15:32:27Z 2017-08-08T00:00:00.000 25833 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABBZO01 2011 GPSC31 substr. ST304 2017-08-08T13:54:43Z Prokka current 43 9f7acd40-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABBZO01 Scaffold SOURCE_DATABASE_GENBANK Israel 2019-05-16 GPSC31 species_match 98.91 SAMEA104035823 8 Streptococcus pneumoniae 91.76 Streptococcus pneumoniae PRJEB3084 8 na 87699 type Streptococcus pneumoniae 2019-05-22 1 1 Homo sapiens 2084 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699716 SC 2006 2017-08-10T16:10:04.680 2092123 91.76 1313 2136 Streptococcus pneumoniae 2024-02-06T15:52:27.000 2092133 2245STDY6835901 87699 2092123 blood/CSF Homo sapiens IPD from large multi-isolate project ST306 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901284765.1 type Streptococcus pneumoniae blood/CSF 98.94 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAVFN000000000.1 2017-08-08T13:54:43Z GCA_901284765.1 haploid public c1b24320-1f66-11e7-b93e-3c4a9275d6c8 90.94 50 2017-08-10T17:10:04.243 GCA_001457635.1 826193 52 22841_3#50 c1b24320-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_3#50 SAMEA104035823 1313 Generic.1.0 90.94 SRA category_na live 2019-04-18T15:32:31Z GPSC31 PRJEB3084 SC SC 49 3052576 2019-04-18T15:32:31Z 2017-08-08T00:00:00.000 9168 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAVFN01 2006 GPSC31 substr. ST306 2017-08-08T13:54:43Z Prokka current 49 c1b24320-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAVFN01 Scaffold SOURCE_DATABASE_GENBANK Israel 2019-05-22 GPSC31 species_match 98.94 SAMEA1024089 9 Streptococcus pneumoniae 91.01 Streptococcus pneumoniae 1313 PRJEB2357 9 current na 69673 type Streptococcus pneumoniae 2015-07-28 2 2 species Homo sapiens 2017 Streptococcus pneumoniae Streptococcus pneumoniae ERS019275 SC 2008-02-20 v1.2.4 2012-01-20T19:42:19.330 99.1 2065719 91.01 1313 2054 2024-02-05T16:17:57.000 2065719 69673 2065706 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001335815.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CFBB00000000.1 2011-10-11T09:20:04Z GCA_001335815.1 haploid public SMRU117-sc-2011-01-27-1060306 89.06 1.41 53 2016-01-29T08:05:17 GCA_001457635.1 817374 37 6593_4#21 SMRU117-sc-2011-01-27-1060306 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024089 1313 GCF_001335815.1 Generic.1.0 89.06 SRA GCF_001335815.1 category_na live 2018-03-09T09:52:55Z SMRU117 PRJEB2357 GCF_001335815.1-RS_2026_01_13 SC SC 53 2018-03-09T09:52:55Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFBB01 2008-02-20 2 2011-10-11T09:20:04Z Prokka current 53 SMRU117-sc-2011-01-27-1060306 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFBB01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-01 SMRU117 species_match 98.75 SAMEA1024089 9 Streptococcus pneumoniae 91.01 Streptococcus pneumoniae 1313 PRJEB2357 9 current na Best-placed reference protein set; GeneMarkS-2+ 69673 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-13 2 2 species Homo sapiens 1943 Streptococcus pneumoniae Streptococcus pneumoniae ERS019275 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-02-20 v1.2.4 2012-01-20T19:42:19.330 99.1 2065719 91.01 1313 2142 2024-02-05T16:17:57.000 2065719 69673 2065706 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 161 EBI 100 GCA_001457635.1 GCF_001335815.1-RS_2026_01_13 SLX Streptococcus pneumoniae GCF_001335815.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CFBB00000000.1 2011-10-11T09:20:04Z GCF_001335815.1 haploid public SMRU117-sc-2011-01-27-1060306 89.06 1.41 53 2016-01-29T08:05:17 GCA_001457635.1 817374 38 6593_4#21 SMRU117-sc-2011-01-27-1060306 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024089 1313 GCA_001335815.1 Generic.1.0 89.06 SRA GCA_001335815.1 category_na live 2018-03-09T09:52:55Z SMRU117 PRJEB2357 Annotation submitted by SC SC SC 53 2018-03-09T09:52:55Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFBB01 2008-02-20 SMRU117 6.10 2011-10-11T09:20:04Z Prokka current 53 SMRU117-sc-2011-01-27-1060306 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFBB01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-01 SMRU117 species_match 98.75 SAMEA2239035 16 Streptococcus pneumoniae 90.9 Streptococcus pneumoniae 1313 PRJEB4909 16 current na 45759 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2079 Streptococcus pneumoniae Streptococcus pneumoniae ERS367847 SC 2006/2012 v1.2.4 2014-05-07T08:35:15.970 98.99 2098814 90.9 1313 2124 2024-02-06T05:19:18.000 2100817 45759 2098811 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900026505.1 type CSF 98.95 ERC000011 OK 39.5 Streptococcus pneumoniae 46.3223 https://www.ncbi.nlm.nih.gov/nuccore/FCRK00000000.1 2014-03-18T09:35:29Z GCA_900026505.1 haploid public 990451-sc-2013-11-05T12:06:51Z-1750403 90.38 0.73 85 2015-08-10T19:24:38 GCA_001457635.1 828215 45 11861_4#89 990451-sc-2013-11-05T12:06:51Z-1750403 Netherlands 11861_4#89 SAMEA2239035 1313 GCF_900026505.1 Generic.1.0 90.38 SRA GCF_900026505.1 category_na live 2018-03-09T10:29:21Z 2842STDY5644414 PRJEB4909 GCF_900026505.1-RS_2025_09_21 SC SC 77 1750403 2018-03-09T10:29:21Z 2014-03-18T00:00:00.000 990451 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCRK01 2006/2012 2842STDY5644414 2014-03-18T09:35:29Z Prokka current 77 990451-sc-2013-11-05T12:06:51Z-1750403 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCRK01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644414 species_match 98.95 SAMEA2239035 16 Streptococcus pneumoniae 90.9 Streptococcus pneumoniae 1313 PRJEB4909 16 current na Best-placed reference protein set; GeneMarkS-2+ 45759 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1986 Streptococcus pneumoniae Streptococcus pneumoniae ERS367847 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:15.970 98.99 2098814 90.9 1313 2242 2024-02-06T05:19:18.000 2100817 45759 2098811 CSF Homo sapiens Streptococcus pneumoniae Disease 205 EBI 100 GCA_001457635.1 GCF_900026505.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900026505.1 type CSF 98.95 ERC000011 OK 39.5 Streptococcus pneumoniae 46.3223 https://www.ncbi.nlm.nih.gov/nuccore/FCRK00000000.1 2014-03-18T09:35:29Z GCF_900026505.1 haploid public 990451-sc-2013-11-05T12:06:51Z-1750403 90.38 0.73 85 2015-08-10T19:24:38 GCA_001457635.1 828215 51 11861_4#89 990451-sc-2013-11-05T12:06:51Z-1750403 Netherlands 11861_4#89 SAMEA2239035 1313 GCA_900026505.1 Generic.1.0 90.38 SRA GCA_900026505.1 category_na live 2018-03-09T10:29:21Z 2842STDY5644414 PRJEB4909 Annotation submitted by SC SC SC 77 1750403 2018-03-09T10:29:21Z 2014-03-18T00:00:00.000 990451 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCRK01 2006/2012 2842STDY5644414 6.10 2014-03-18T09:35:29Z Prokka current 77 990451-sc-2013-11-05T12:06:51Z-1750403 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCRK01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644414 species_match 98.95 SAMEA1024576 12 Streptococcus pneumoniae 97.88 Streptococcus pneumoniae 1313 PRJEB2393 13 current na 37780 type Streptococcus pneumoniae 2015-07-17 1 1 species Homo sapiens 1954 Streptococcus pneumoniae Streptococcus pneumoniae ERS020274 SC 2008-09-25 v1.2.4 2012-01-20T19:50:50.530 99.31 2000438 97.88 1313 1987 2024-02-05T16:27:54.000 2000471 37780 2000423 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001173585.1 type nasopharynx 99.47 OK 40.0 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CQWN00000000.1 2011-11-07T13:55:52Z GCA_001173585.1 haploid public SMRU764-sc-2011-01-27-1060953 92.76 0.31 143 2015-07-28T08:11:20 GCA_001457635.1 795922 33 6714_7#20 SMRU764-sc-2011-01-27-1060953 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024576 1313 GCF_001173585.1 Generic.1.0 92.76 SRA GCF_001173585.1 category_na live 2018-03-09T09:53:03Z SMRU764 PRJEB2393 GCF_001173585.1-RS_2026_02_02 SC SC 140 2018-03-09T09:53:03Z 2011-11-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQWN01 2008-09-25 SMRU764 2011-11-07T13:55:52Z Prokka current 140 SMRU764-sc-2011-01-27-1060953 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQWN01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU764 species_match 99.47 SAMEA1024576 12 Streptococcus pneumoniae 97.88 Streptococcus pneumoniae 1313 PRJEB2393 13 current na Best-placed reference protein set; GeneMarkS-2+ 37780 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-02 1 1 species Homo sapiens 1866 Streptococcus pneumoniae Streptococcus pneumoniae ERS020274 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-09-25 v1.2.4 2012-01-20T19:50:50.530 99.31 2000438 97.88 1313 2085 2024-02-05T16:27:54.000 2000471 37780 2000423 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 181 EBI 100 GCA_001457635.1 GCF_001173585.1-RS_2026_02_02 SLX Streptococcus pneumoniae GCF_001173585.1 type nasopharynx 99.47 OK 40.0 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CQWN00000000.1 2011-11-07T13:55:52Z GCF_001173585.1 haploid public SMRU764-sc-2011-01-27-1060953 92.76 0.31 143 2015-07-28T08:11:20 GCA_001457635.1 795922 38 6714_7#20 SMRU764-sc-2011-01-27-1060953 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024576 1313 GCA_001173585.1 Generic.1.0 92.76 SRA GCA_001173585.1 category_na live 2018-03-09T09:53:03Z SMRU764 PRJEB2393 Annotation submitted by SC SC SC 140 2018-03-09T09:53:03Z 2011-11-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQWN01 2008-09-25 SMRU764 6.10 2011-11-07T13:55:52Z Prokka current 140 SMRU764-sc-2011-01-27-1060953 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQWN01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU764 species_match 99.47 SAMEA3431647 2 Streptococcus pneumoniae 91.19 Streptococcus pneumoniae PRJEB3084 2 na 663930 type Streptococcus pneumoniae 2019-05-11 2 2 Homo sapiens 2047 Streptococcus pneumoniae Streptococcus pneumoniae ERS740932 SC 1997 2016-01-20T08:06:54.030 2058117 91.19 1313 2096 Streptococcus pneumoniae 2024-02-06T15:51:32.000 2058117 663930 2058117 clinical specimen Homo sapiens IPD from large multi-isolate project ST1504 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901287475.1 type clinical specimen 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAVPR000000000.1 2016-01-19T09:16:43Z GCA_901287475.1 haploid public GPS_HK_191-sc-2296894 85.53 13 2017-10-07T09:05:54 GCA_053203845.1 815915 49 18090_2#187 GPS_HK_191-sc-2296894 China 18090_2#187 SAMEA3431647 1313 Generic.1.0 85.53 SRA category_na live 2019-04-18T15:32:17Z GPSC96 PRJEB3084 SC SC 13 2296894 2019-04-18T15:32:17Z 2016-01-19T00:00:00.000 HK_191 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAVPR01 1997 GPSC96 substr. ST1504 2016-01-19T09:16:43Z Prokka current 13 GPS_HK_191-sc-2296894 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAVPR01 Contig SOURCE_DATABASE_GENBANK China 2019-05-11 GPSC96 species_match 98.73 SAMEA3389350 2 Streptococcus pneumoniae 95.1 Streptococcus pneumoniae PRJEB3084 2 na 470910 type Streptococcus pneumoniae 2019-05-10 2 2 Homo sapiens 1968 Streptococcus pneumoniae Streptococcus pneumoniae ERS725453 SC 2013 2016-02-24T08:10:07.486 1983392 95.1 1313 2018 Streptococcus pneumoniae 2024-02-06T15:53:12.000 1983392 470910 1983389 CSF Homo sapiens Meningitis from large multi-isolate project ST9476 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901288595.1 type CSF 98.8 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAVUA000000000.1 2016-02-23T15:24:50Z GCA_901288595.1 haploid public GPS_MW_1303_UNC-sc-2295825 89.35 16 2018-03-10T20:16:09 GCA_001457635.1 788852 50 18456_1#171 GPS_MW_1303_UNC-sc-2295825 Malawi 18456_1#171 SAMEA3389350 1313 Generic.1.0 89.35 SRA category_na live 2019-04-18T15:32:43Z GPSC96 PRJEB3084 SC SC 16 2295825 2019-04-18T15:32:43Z 2016-02-23T00:00:00.000 GPS_MW_1303_UNC https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAVUA01 2013 GPSC96 substr. ST9476 2016-02-23T15:24:50Z Prokka current 16 GPS_MW_1303_UNC-sc-2295825 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAVUA01 Contig SOURCE_DATABASE_GENBANK Malawi 2019-05-10 GPSC96 species_match 98.8 SAMEA3390010 2 Streptococcus pneumoniae 95.08 Streptococcus pneumoniae PRJEB3084 2 na 447299 type Streptococcus pneumoniae 2019-05-10 2 2 Homo sapiens 1966 Streptococcus pneumoniae Streptococcus pneumoniae ERS726113 SC 2014 2016-01-13T08:11:21.770 1983663 95.08 1313 2017 Streptococcus pneumoniae 2024-02-06T15:57:46.000 1983948 447299 1983663 Homo sapiens Disease from large multi-isolate project ST9476 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901305995.1 type 98.79 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAYIO000000000.1 2016-01-12T09:01:09Z GCA_901305995.1 haploid public GPS_MW_BKR5DO-sc-2296255 89.34 21 2018-03-10T20:15:15 GCA_001457635.1 788906 51 17966_5#92 GPS_MW_BKR5DO-sc-2296255 Malawi 17966_5#92 SAMEA3390010 1313 Generic.1.0 89.34 SRA category_na live 2019-04-18T16:00:57Z GPSC96 PRJEB3084 SC SC 20 2296255 2019-04-18T16:00:57Z 2016-01-12T00:00:00.000 GPS_MW_BKR5DO https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAYIO01 2014 GPSC96 substr. ST9476 2016-01-12T09:01:09Z Prokka current 20 GPS_MW_BKR5DO-sc-2296255 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAYIO01 Scaffold SOURCE_DATABASE_GENBANK Malawi 2019-05-10 GPSC96 species_match 98.79 SAMEA3431379 3 Streptococcus pneumoniae 92.28 Streptococcus pneumoniae PRJEB3084 3 na 363704 type Streptococcus pneumoniae 2019-05-11 2 2 Homo sapiens 2027 Streptococcus pneumoniae Streptococcus pneumoniae ERS740664 SC 2006 2016-01-20T08:06:44.983 2043782 92.28 1313 2080 Streptococcus pneumoniae 2024-02-06T15:51:03.000 2043782 363704 2043780 blood Homo sapiens IPD from large multi-isolate project ST74 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901312775.1 type blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAZIM000000000.1 2016-01-19T09:16:43Z GCA_901312775.1 haploid public GPS_US_PATH3765-sc-2296553 89.34 19 2018-03-10T20:15:32 GCA_001457635.1 810232 53 18090_1#109 GPS_US_PATH3765-sc-2296553 Bangladesh 18090_1#109 SAMEA3431379 1313 Generic.1.0 89.34 SRA category_na live 2019-04-18T15:32:10Z GPSC96 PRJEB3084 SC SC 19 2296553 2019-04-18T15:32:10Z 2016-01-19T00:00:00.000 PATH3765 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAZIM01 2006 GPSC96 substr. ST74 2016-01-19T09:16:43Z Prokka current 19 GPS_US_PATH3765-sc-2296553 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAZIM01 Contig SOURCE_DATABASE_GENBANK Bangladesh 2019-05-11 GPSC96 species_match 98.79 SAMEA104035117 3 Streptococcus pneumoniae 93.53 Streptococcus pneumoniae PRJEB3084 3 na 355040 type Streptococcus pneumoniae 2019-05-10 2 2 Homo sapiens 1991 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699010 SC 2009 2017-08-10T16:09:49.073 2006259 93.53 1313 2041 Streptococcus pneumoniae 2024-02-06T15:51:53.000 2006275 2245STDY6835188 355040 2006258 blood Homo sapiens IPD from large multi-isolate project ST1504 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901318485.1 type Streptococcus pneumoniae blood 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABAED000000000.1 2017-08-08T13:54:44Z GCA_901318485.1 haploid public 868221d0-1f66-11e7-b93e-3c4a9275d6c8 85.51 11 2017-08-10T17:09:44.160 GCA_053203845.1 796885 50 22667_7#121 868221d0-1f66-11e7-b93e-3c4a9275d6c8 Israel 22667_7#121 SAMEA104035117 1313 Generic.1.0 85.51 SRA category_na live 2019-04-18T15:32:24Z GPSC96 PRJEB3084 SC SC 10 3051863 2019-04-18T15:32:24Z 2017-08-08T00:00:00.000 23552 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABAED01 2009 GPSC96 substr. ST1504 2017-08-08T13:54:44Z Prokka current 10 868221d0-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABAED01 Scaffold SOURCE_DATABASE_GENBANK Israel 2019-05-10 GPSC96 species_match 98.73 SAMEA104035314 3 Streptococcus pneumoniae 93.96 Streptococcus pneumoniae PRJEB3084 3 na 354630 type Streptococcus pneumoniae 2019-05-10 2 2 Homo sapiens 1969 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699207 SC 2011 2017-08-10T16:09:53.210 1992927 93.96 1313 2020 Streptococcus pneumoniae 2024-02-06T15:52:08.000 1992927 2245STDY6835399 354630 1992926 blood Homo sapiens IPD from large multi-isolate project ST1504 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901286645.1 type Streptococcus pneumoniae blood 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAVMT000000000.1 2017-08-08T13:54:43Z GCA_901286645.1 haploid public 97c67360-1f66-11e7-b93e-3c4a9275d6c8 85.34 15 2017-08-10T17:09:49.607 GCA_053203845.1 791820 51 22841_4#20 97c67360-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_4#20 SAMEA104035314 1313 Generic.1.0 85.34 SRA category_na live 2019-04-18T15:32:27Z GPSC96 PRJEB3084 SC SC 15 3052074 2019-04-18T15:32:27Z 2017-08-08T00:00:00.000 25366 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAVMT01 2011 GPSC96 substr. ST1504 2017-08-08T13:54:43Z Prokka current 15 97c67360-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAVMT01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-10 GPSC96 species_match 98.73 SAMEA3713943 2 Streptococcus pneumoniae 94.37 Streptococcus pneumoniae PRJEB3084 2 na 348712 type Streptococcus pneumoniae 2019-05-10 3 3 Homo sapiens 1977 Streptococcus pneumoniae Streptococcus pneumoniae ERS1021092 SC 1997 2016-06-15T09:07:18.900 1983756 94.37 1313 2028 Streptococcus pneumoniae 2024-02-06T15:51:36.000 1983792 348712 1983756 clinical specimen Homo sapiens IPD from large multi-isolate project ST6012 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901303695.1 type clinical specimen 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAXZS000000000.1 2016-06-14T13:33:01Z GCA_901303695.1 haploid public 394a4060-41bd-11e5-a83d-3c4a9275d6c6 85.31 22 2016-06-15T10:09:57.007 GCA_053203845.1 786703 51 19341_2#120 394a4060-41bd-11e5-a83d-3c4a9275d6c6 China 19341_2#120 SAMEA3713943 1313 Generic.1.0 85.31 SRA category_na live 2019-04-18T15:32:18Z GPSC12 PRJEB3084 SC SC 21 2377764 2019-04-18T15:32:18Z 2016-06-14T00:00:00.000 GPS_HK_255 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAXZS01 1997 GPSC12 substr. ST6012 2016-06-14T13:33:01Z Prokka current 21 394a4060-41bd-11e5-a83d-3c4a9275d6c6 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAXZS01 Scaffold SOURCE_DATABASE_GENBANK China 2019-05-10 GPSC12 species_match 98.72 SAMEA3388921 3 Streptococcus pneumoniae 93.98 Streptococcus pneumoniae PRJEB3084 3 na 337742 type Streptococcus pneumoniae 2019-05-10 2 2 Homo sapiens 1961 Streptococcus pneumoniae Streptococcus pneumoniae ERS725024 SC 2011 2015-12-16T09:08:18.953 1993962 93.98 1313 2012 Streptococcus pneumoniae 2024-02-06T15:57:53.000 1993962 337742 1993960 CSF Homo sapiens Meningitis from large multi-isolate project ST1504 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901291105.1 type CSF 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWDQ000000000.1 2015-12-15T09:25:20Z GCA_901291105.1 haploid public GPS_MA_572-sc-2279605 85.4 20 2018-03-10T20:14:09 GCA_053203845.1 792278 51 17794_8#152 GPS_MA_572-sc-2279605 Morocco 17794_8#152 SAMEA3388921 1313 Generic.1.0 85.4 SRA category_na live 2019-04-18T16:00:59Z GPSC96 PRJEB3084 SC SC 20 2279605 2019-04-18T16:00:59Z 2015-12-15T00:00:00.000 572_011 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWDQ01 2011 GPSC96 substr. ST1504 2015-12-15T09:25:20Z Prokka current 20 GPS_MA_572-sc-2279605 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWDQ01 Contig SOURCE_DATABASE_GENBANK Morocco 2019-05-10 GPSC96 species_match 98.73 SAMEA3714439 3 Streptococcus pneumoniae 92.08 Streptococcus pneumoniae PRJEB3084 3 na 302933 type Streptococcus pneumoniae 2019-05-11 2 2 Homo sapiens 2025 Streptococcus pneumoniae Streptococcus pneumoniae ERS1021588 SC 2007 2016-05-25T12:11:16.486 2041144 92.08 1313 2075 Streptococcus pneumoniae 2024-02-06T15:51:03.000 2041144 302933 2041144 blood Homo sapiens IPD from large multi-isolate project ST74 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901292985.1 type blood 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWKV000000000.1 2016-05-24T10:11:03Z GCA_901292985.1 haploid public 52490650-41bd-11e5-a83d-3c4a9275d6c6 85.65 19 2016-05-25T13:12:29.353 GCA_053203845.1 809213 50 19084_8#102 52490650-41bd-11e5-a83d-3c4a9275d6c6 Bangladesh 19084_8#102 SAMEA3714439 1313 Generic.1.0 85.65 SRA category_na live 2019-04-18T15:32:10Z GPSC96 PRJEB3084 SC SC 19 2378264 2019-04-18T15:32:10Z 2016-05-24T00:00:00.000 PATH3638 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWKV01 2007 GPSC96 substr. ST74 2016-05-24T10:11:03Z Prokka current 19 52490650-41bd-11e5-a83d-3c4a9275d6c6 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWKV01 Contig SOURCE_DATABASE_GENBANK Bangladesh 2019-05-11 GPSC96 species_match 98.71 SAMEA3390014 3 Streptococcus pneumoniae 95.05 Streptococcus pneumoniae PRJEB3084 3 na 285317 type Streptococcus pneumoniae 2019-05-10 2 2 Homo sapiens 1968 Streptococcus pneumoniae Streptococcus pneumoniae ERS726117 SC 2014 2016-01-13T08:11:21.910 1984924 95.05 1313 2018 Streptococcus pneumoniae 2024-02-06T15:57:46.000 1984924 285317 1984923 blood Homo sapiens bacteraemia from large multi-isolate project ST9476 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901306225.1 type blood 98.8 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAYJJ000000000.1 2016-01-12T09:01:08Z GCA_901306225.1 haploid public GPS_MW_BKQFG1-sc-2296259 89.37 15 2018-03-10T20:15:15 GCA_001457635.1 789338 50 17966_5#94 GPS_MW_BKQFG1-sc-2296259 Malawi 17966_5#94 SAMEA3390014 1313 Generic.1.0 89.37 SRA category_na live 2019-04-18T16:00:57Z GPSC96 PRJEB3084 SC SC 15 2296259 2019-04-18T16:00:57Z 2016-01-12T00:00:00.000 GPS_MW_BKQFG1 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAYJJ01 2014 GPSC96 substr. ST9476 2016-01-12T09:01:08Z Prokka current 15 GPS_MW_BKQFG1-sc-2296259 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAYJJ01 Contig SOURCE_DATABASE_GENBANK Malawi 2019-05-10 GPSC96 species_match 98.8 SAMEA104154670 3 Streptococcus pneumoniae 94.44 Streptococcus pneumoniae PRJEB3084 3 na 339974 type Streptococcus pneumoniae 2019-05-10 3 3 Homo sapiens 1975 Streptococcus pneumoniae Streptococcus pneumoniae ERS1813688 SC 2012 2017-08-10T16:10:33.110 1988054 94.44 1313 2026 Streptococcus pneumoniae 2024-02-06T15:51:16.000 1988125 2245STDY6655005 278422 1988054 CSF Homo sapiens MENINGITIS from large multi-isolate project ST180 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901293465.1 type Streptococcus pneumoniae CSF 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWMR000000000.1 2017-08-08T13:54:44Z GCA_901293465.1 haploid public 674bdbf0-c37a-11e6-b158-3c4a9275d6c8 88.95 14 2017-08-10T17:10:44.720 GCA_001457635.1 789209 51 21999_7#143 674bdbf0-c37a-11e6-b158-3c4a9275d6c8 Brazil 21999_7#143 SAMEA104154670 1313 Generic.1.0 88.95 SRA category_na live 2019-04-18T15:32:13Z GPSC12 PRJEB3084 SC SC 13 2868908 2019-04-18T15:32:13Z 2017-08-08T00:00:00.000 0793_12 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWMR01 2012 GPSC12 substr. ST180 2017-08-08T13:54:44Z Prokka current 13 674bdbf0-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWMR01 Scaffold SOURCE_DATABASE_GENBANK Brazil 2019-05-10 GPSC12 species_match 98.8 SAMEA104035393 3 Streptococcus pneumoniae 93.92 Streptococcus pneumoniae PRJEB3084 3 na 268705 type Streptococcus pneumoniae 2019-05-11 2 2 Homo sapiens 2021 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699286 SC 2012 2017-08-10T16:09:54.970 2029012 93.92 1313 2071 Streptococcus pneumoniae 2024-02-06T15:52:10.000 2029040 2245STDY6835466 268705 2029012 blood Homo sapiens IPD from large multi-isolate project ST1504 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901288065.1 type Streptococcus pneumoniae blood 98.71 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAVRX000000000.1 2017-08-08T13:54:42Z GCA_901288065.1 haploid public 9a60a640-1f66-11e7-b93e-3c4a9275d6c8 90.28 15 2017-08-10T17:09:51.843 GCA_001457635.1 806645 50 22841_4#87 9a60a640-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_4#87 SAMEA104035393 1313 Generic.1.0 90.28 SRA category_na live 2019-04-18T15:32:27Z GPSC96 PRJEB3084 SC SC 14 3052141 2019-04-18T15:32:27Z 2017-08-08T00:00:00.000 26319 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAVRX01 2012 GPSC96 substr. ST1504 2017-08-08T13:54:42Z Prokka current 14 9a60a640-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAVRX01 Scaffold SOURCE_DATABASE_GENBANK Israel 2019-05-11 GPSC96 species_match 98.71 SAMEA104035198 3 Streptococcus pneumoniae 96.4 Streptococcus pneumoniae PRJEB3084 3 na 266739 type Streptococcus pneumoniae 2019-05-10 3 3 Homo sapiens 1946 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699091 SC 2010 2017-08-10T16:09:50.760 1974688 96.4 1313 1997 Streptococcus pneumoniae 2024-02-06T15:52:03.000 1974705 2245STDY6835269 266739 1974687 blood Homo sapiens IPD from large multi-isolate project ST180 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901293315.1 type Streptococcus pneumoniae blood 98.72 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWMC000000000.1 2017-08-08T13:54:45Z GCA_901293315.1 haploid public 89f4da60-1f66-11e7-b93e-3c4a9275d6c8 86.75 21 2017-08-10T17:09:46.343 GCA_053203845.1 785855 51 22841_1#5 89f4da60-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_1#5 SAMEA104035198 1313 Generic.1.0 86.75 SRA category_na live 2019-04-18T15:32:25Z GPSC12 PRJEB3084 SC SC 20 3051944 2019-04-18T15:32:25Z 2017-08-08T00:00:00.000 24091 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWMC01 2010 GPSC12 substr. ST180 2017-08-08T13:54:45Z Prokka current 20 89f4da60-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWMC01 Scaffold SOURCE_DATABASE_GENBANK Israel 2019-05-10 GPSC12 species_match 98.72 SAMEA4732941 2 Streptococcus pneumoniae 91.79 Streptococcus pneumoniae PRJEB3084 3 na 263893 type Streptococcus pneumoniae 2019-05-10 3 3 Homo sapiens 1977 Streptococcus pneumoniae Streptococcus pneumoniae ERS2553067 SC 2013 2018-07-03T19:25:24.150 2017419 91.79 1313 2029 Streptococcus pneumoniae 2024-02-06T15:51:45.000 2017456 2245STDY7145202 263893 2017410 clinical specimen Homo sapiens IPD from large multi-isolate project ST6011 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901292045.1 type Streptococcus pneumoniae clinical specimen 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWHF000000000.1 2018-06-26T17:03:52Z GCA_901292045.1 haploid public f0566b6e-af2d-11e7-a639-3c4a9275d6c8 84.39 15 2018-07-04T10:48:18.997 GCA_053203845.1 798524 52 24775_1#98 f0566b6e-af2d-11e7-a639-3c4a9275d6c8 China 24775_1#98 SAMEA4732941 1313 Generic.1.0 84.39 SRA category_na live 2019-04-18T15:32:20Z GPSC43 PRJEB3084 SC SC 14 3362803 2019-04-18T15:32:20Z 2018-06-26T00:00:00.000 GPS_HK_508 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWHF01 2013 GPSC43 substr. ST6011 2018-06-26T17:03:52Z Prokka current 14 f0566b6e-af2d-11e7-a639-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWHF01 Scaffold SOURCE_DATABASE_GENBANK China 2019-05-10 GPSC43 species_match 98.74 SAMEA2239109 4 Streptococcus pneumoniae 94.79 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 192225 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2012 Streptococcus pneumoniae Streptococcus pneumoniae ERS367921 SC 2006/2012 v1.2.4 2014-05-07T08:35:21.133 98.84 2009763 94.79 1313 2054 2024-02-06T05:03:02.000 2012190 157029 2009761 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900018805.1 type CSF 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FDRA00000000.1 2014-03-18T09:35:29Z GCA_900018805.1 haploid public 2000157-sc-2013-11-05T12:08:04Z-1750479 90.25 0.62 32 2015-08-10T19:24:42 GCA_001457635.1 798600 42 11860_7#70 2000157-sc-2013-11-05T12:08:04Z-1750479 Netherlands 11860_7#70 SAMEA2239109 1313 GCF_900018805.1 Generic.1.0 90.25 SRA GCF_900018805.1 category_na live 2018-03-09T10:27:29Z 2842STDY5644490 PRJEB4909 GCF_900018805.1-RS_2025_09_28 SC SC 22 1750479 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2000157 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRA01 2006/2012 2842STDY5644490 2014-03-18T09:35:29Z Prokka current 22 2000157-sc-2013-11-05T12:08:04Z-1750479 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRA01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644490 species_match 98.77 SAMEA2239109 4 Streptococcus pneumoniae 94.79 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 192225 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1897 Streptococcus pneumoniae Streptococcus pneumoniae ERS367921 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:21.133 98.84 2009763 94.79 1313 2120 2024-02-06T05:03:02.000 2012190 157029 2009761 CSF Homo sapiens Streptococcus pneumoniae Disease 174 EBI 100 GCA_001457635.1 GCF_900018805.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900018805.1 type CSF 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FDRA00000000.1 2014-03-18T09:35:29Z GCF_900018805.1 haploid public 2000157-sc-2013-11-05T12:08:04Z-1750479 90.25 0.62 32 2015-08-10T19:24:42 GCA_001457635.1 798600 49 11860_7#70 2000157-sc-2013-11-05T12:08:04Z-1750479 Netherlands 11860_7#70 SAMEA2239109 1313 GCA_900018805.1 Generic.1.0 90.25 SRA GCA_900018805.1 category_na live 2018-03-09T10:27:29Z 2842STDY5644490 PRJEB4909 Annotation submitted by SC SC SC 22 1750479 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2000157 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRA01 2006/2012 2842STDY5644490 6.10 2014-03-18T09:35:29Z Prokka current 22 2000157-sc-2013-11-05T12:08:04Z-1750479 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRA01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644490 species_match 98.77 SAMEA1023953 6 Streptococcus pneumoniae 92.84 Streptococcus pneumoniae 1313 PRJEB2357 6 current na 118694 type Streptococcus pneumoniae 2015-07-11 3 3 species Homo sapiens 2003 Streptococcus pneumoniae Streptococcus pneumoniae ERS019365 SC 2008-03-20 v1.2.4 2012-01-20T19:43:17.613 98.53 2042857 92.84 1313 2042 2024-02-05T16:18:03.000 2042857 118694 2042847 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001127045.1 type nasopharynx 98.79 OK 39.5 Streptococcus pneumoniae 19.1729 https://www.ncbi.nlm.nih.gov/nuccore/CKRS00000000.1 2011-10-25T09:28:13Z GCA_001127045.1 haploid public SMRU207-sc-2011-01-27-1060396 89.84 0.35 36 2015-07-28T08:10:52 GCA_001457635.1 810691 39 6680_8#15 SMRU207-sc-2011-01-27-1060396 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1023953 1313 GCF_001127045.1 Generic.1.0 89.84 SRA GCF_001127045.1 category_na live 2018-03-09T09:52:56Z SMRU207 PRJEB2357 GCF_001127045.1-RS_2026_01_20 SC SC 36 2018-03-09T09:52:56Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKRS01 2008-03-20 SMRU207 2011-10-25T09:28:13Z Prokka current 36 SMRU207-sc-2011-01-27-1060396 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKRS01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU207 species_match 98.79 SAMEA1023953 6 Streptococcus pneumoniae 92.84 Streptococcus pneumoniae 1313 PRJEB2357 6 current na Best-placed reference protein set; GeneMarkS-2+ 118694 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-20 3 3 species Homo sapiens 1890 Streptococcus pneumoniae Streptococcus pneumoniae ERS019365 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-03-20 v1.2.4 2012-01-20T19:43:17.613 98.53 2042857 92.84 1313 2107 2024-02-05T16:18:03.000 2042857 118694 2042847 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 174 EBI 100 GCA_001457635.1 GCF_001127045.1-RS_2026_01_20 SLX Streptococcus pneumoniae GCF_001127045.1 type nasopharynx 98.79 OK 39.5 Streptococcus pneumoniae 19.1729 https://www.ncbi.nlm.nih.gov/nuccore/CKRS00000000.1 2011-10-25T09:28:13Z GCF_001127045.1 haploid public SMRU207-sc-2011-01-27-1060396 89.84 0.35 36 2015-07-28T08:10:52 GCA_001457635.1 810691 43 6680_8#15 SMRU207-sc-2011-01-27-1060396 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1023953 1313 GCA_001127045.1 Generic.1.0 89.84 SRA GCA_001127045.1 category_na live 2018-03-09T09:52:56Z SMRU207 PRJEB2357 Annotation submitted by SC SC SC 36 2018-03-09T09:52:56Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKRS01 2008-03-20 SMRU207 6.10 2011-10-25T09:28:13Z Prokka current 36 SMRU207-sc-2011-01-27-1060396 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKRS01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU207 species_match 98.79 SAMEA1032612 9 Streptococcus pneumoniae 94.43 Streptococcus pneumoniae 1313 PRJEB2632 9 current na 91041 type Streptococcus pneumoniae 2015-07-29 3 3 species Homo sapiens 1995 Streptococcus pneumoniae Streptococcus pneumoniae ERS044007 SC 2004 v1.2.3 2012-01-23T19:53:28.760 98.78 2012026 94.43 1313 2026 2024-02-06T09:02:19.000 2012026 91041 2012026 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001082985.2 type nasopharynx 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 31.4577 https://www.ncbi.nlm.nih.gov/nuccore/CNRH00000000.2 2012-01-19T13:56:14Z GCA_001082985.2 haploid public 3202-sc-2011-08-01T09:44:37Z-1250072 90.01 0.62 134 2015-09-10T08:19:56 GCA_001457635.1 799556 31 6999_1#19 3202-sc-2011-08-01T09:44:37Z-1250072 USA: Massachesetts Streptococcus pneumoniae SAMEA1032612 1313 GCF_001082985.1 Generic.1.0 90.01 SRA GCF_001082985.1 category_na live 2018-03-09T11:42:36Z R34-3202 PRJEB2632 GCF_001082985.1-RS_2025_03_31 SC SC 134 2018-03-09T11:42:36Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNRH02 2004 R34-3202 2012-01-19T13:56:14Z Velvet current 134 3202-sc-2011-08-01T09:44:37Z-1250072 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNRH02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 3202 species_match 98.78 SAMEA1032612 9 Streptococcus pneumoniae 94.43 Streptococcus pneumoniae 1313 PRJEB2632 9 current na Best-placed reference protein set; GeneMarkS-2+ 91041 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-03-31 3 3 species Homo sapiens 1906 Streptococcus pneumoniae Streptococcus pneumoniae ERS044007 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2004 v1.2.3 2012-01-23T19:53:28.760 98.78 2012026 94.43 1313 2144 2024-02-06T09:02:19.000 2012026 91041 2012026 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 189 EBI 100 GCA_001457635.1 GCF_001082985.1-RS_2025_03_31 SLX Streptococcus pneumoniae GCF_001082985.1 type nasopharynx 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 31.4577 https://www.ncbi.nlm.nih.gov/nuccore/CNRH00000000.2 2012-01-19T13:56:14Z GCF_001082985.1 haploid public 3202-sc-2011-08-01T09:44:37Z-1250072 90.01 0.62 134 2015-09-10T08:19:56 GCA_001457635.1 799556 49 6999_1#19 3202-sc-2011-08-01T09:44:37Z-1250072 USA: Massachesetts Streptococcus pneumoniae SAMEA1032612 1313 GCA_001082985.2 Generic.1.0 90.01 SRA GCA_001082985.2 category_na live 2018-03-09T11:42:36Z R34-3202 PRJEB2632 Annotation submitted by SC SC SC 134 2018-03-09T11:42:36Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNRH02 2004 R34-3202 6.10 2012-01-19T13:56:14Z Velvet current 134 3202-sc-2011-08-01T09:44:37Z-1250072 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNRH02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 3202 species_match 98.78 SAMEA1032554 8 Streptococcus pneumoniae 94.66 Streptococcus pneumoniae 1313 PRJEB2632 8 current na 91029 type Streptococcus pneumoniae 2015-07-29 3 3 species Homo sapiens 1956 Streptococcus pneumoniae Streptococcus pneumoniae ERS044022 SC 2004 v1.2.3 2012-01-23T19:53:36.396 98.53 1983558 94.66 1313 1987 2024-02-05T17:28:51.000 1983558 91029 1983558 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001104585.2 type nasopharynx 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 19.1729 https://www.ncbi.nlm.nih.gov/nuccore/CNRP00000000.2 2012-01-19T13:56:13Z GCA_001104585.2 haploid public 3217-sc-2011-08-01T09:44:46Z-1250087 88.95 0.62 117 2015-09-10T08:19:57 GCA_001457635.1 787938 31 6999_2#11 3217-sc-2011-08-01T09:44:46Z-1250087 USA: Massachesetts Streptococcus pneumoniae SAMEA1032554 1313 GCF_001104585.1 Generic.1.0 88.95 SRA GCF_001104585.1 category_na live 2018-03-09T09:53:50Z R34-3217 PRJEB2632 GCF_001104585.1-RS_2025_03_31 SC SC 117 2018-03-09T09:53:50Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNRP02 2004 R34-3217 2012-01-19T13:56:13Z Velvet current 117 3217-sc-2011-08-01T09:44:46Z-1250087 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNRP02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 3217 species_match 98.83 SAMEA1032554 8 Streptococcus pneumoniae 94.66 Streptococcus pneumoniae 1313 PRJEB2632 8 current na Best-placed reference protein set; GeneMarkS-2+ 91029 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-03-31 3 3 species Homo sapiens 1864 Streptococcus pneumoniae Streptococcus pneumoniae ERS044022 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2004 v1.2.3 2012-01-23T19:53:36.396 98.53 1983558 94.66 1313 2094 2024-02-05T17:28:51.000 1983558 91029 1983558 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 181 EBI 100 GCA_001457635.1 GCF_001104585.1-RS_2025_03_31 SLX Streptococcus pneumoniae GCF_001104585.1 type nasopharynx 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 19.1729 https://www.ncbi.nlm.nih.gov/nuccore/CNRP00000000.2 2012-01-19T13:56:13Z GCF_001104585.1 haploid public 3217-sc-2011-08-01T09:44:46Z-1250087 88.95 0.62 117 2015-09-10T08:19:57 GCA_001457635.1 787938 49 6999_2#11 3217-sc-2011-08-01T09:44:46Z-1250087 USA: Massachesetts Streptococcus pneumoniae SAMEA1032554 1313 GCA_001104585.2 Generic.1.0 88.95 SRA GCA_001104585.2 category_na live 2018-03-09T09:53:50Z R34-3217 PRJEB2632 Annotation submitted by SC SC SC 117 2018-03-09T09:53:50Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNRP02 2004 R34-3217 6.10 2012-01-19T13:56:13Z Velvet current 117 3217-sc-2011-08-01T09:44:46Z-1250087 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNRP02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 3217 species_match 98.83 SAMEA1023926 14 Streptococcus pneumoniae 93.02 Streptococcus pneumoniae 1313 PRJEB2357 16 current na 45204 type Streptococcus pneumoniae 2015-07-11 3 3 species Homo sapiens 1978 Streptococcus pneumoniae Streptococcus pneumoniae ERS019434 SC 2008-04-11 v1.2.4 2012-01-20T19:44:06.206 97.45 2035250 93.02 1313 2023 2024-02-05T16:19:25.000 2035527 39987 2035187 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001136105.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 4.20588 https://www.ncbi.nlm.nih.gov/nuccore/CKDM00000000.1 2011-10-11T09:20:05Z GCA_001136105.1 haploid public SMRU276-sc-2011-01-27-1060465 89.69 0.38 90 2016-01-29T08:05:18 GCA_001457635.1 807813 45 6630_1#12 SMRU276-sc-2011-01-27-1060465 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023926 1313 GCF_001136105.1 Generic.1.0 89.69 SRA GCF_001136105.1 category_na live 2018-03-09T09:52:56Z SMRU276 PRJEB2357 GCF_001136105.1-RS_2026_02_08 SC SC 75 2018-03-09T09:52:56Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKDM01 2008-04-11 3 2011-10-11T09:20:05Z Prokka current 75 SMRU276-sc-2011-01-27-1060465 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKDM01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU276 species_match 98.8 SAMEA1023926 14 Streptococcus pneumoniae 93.02 Streptococcus pneumoniae 1313 PRJEB2357 16 current na Best-placed reference protein set; GeneMarkS-2+ 45204 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-08 3 3 species Homo sapiens 1867 Streptococcus pneumoniae Streptococcus pneumoniae ERS019434 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-04-11 v1.2.4 2012-01-20T19:44:06.206 97.45 2035250 93.02 1313 2115 2024-02-05T16:19:25.000 2035527 39987 2035187 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 198 EBI 100 GCA_001457635.1 GCF_001136105.1-RS_2026_02_08 SLX Streptococcus pneumoniae GCF_001136105.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 4.20588 https://www.ncbi.nlm.nih.gov/nuccore/CKDM00000000.1 2011-10-11T09:20:05Z GCF_001136105.1 haploid public SMRU276-sc-2011-01-27-1060465 89.69 0.38 90 2016-01-29T08:05:18 GCA_001457635.1 807813 50 6630_1#12 SMRU276-sc-2011-01-27-1060465 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023926 1313 GCA_001136105.1 Generic.1.0 89.69 SRA GCA_001136105.1 category_na live 2018-03-09T09:52:56Z SMRU276 PRJEB2357 Annotation submitted by SC SC SC 75 2018-03-09T09:52:56Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKDM01 2008-04-11 SMRU276 6.10 2011-10-11T09:20:05Z Prokka current 75 SMRU276-sc-2011-01-27-1060465 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKDM01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU276 species_match 98.8 SAMEA3389953 2 Streptococcus pneumoniae 93.94 Streptococcus pneumoniae PRJEB3084 2 na 596621 type Streptococcus pneumoniae 2019-05-10 2 2 Homo sapiens 2026 Streptococcus pneumoniae Streptococcus pneumoniae ERS726056 SC 2010 2016-01-13T08:11:19.490 2021805 93.94 1313 2076 Streptococcus pneumoniae 2024-02-06T15:59:52.000 2022351 596621 2021805 CSF Homo sapiens meningitis from large multi-isolate project ST9476 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901304085.1 type CSF 98.76 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAYBE000000000.1 2016-01-12T09:01:09Z GCA_901304085.1 haploid public GPS_MW_1005892-sc-2296199 89.97 16 2018-03-10T20:15:13 GCA_001457635.1 804477 50 17966_5#63 GPS_MW_1005892-sc-2296199 Malawi 17966_5#63 SAMEA3389953 1313 Generic.1.0 89.97 SRA category_na live 2019-04-18T16:01:32Z GPSC96 PRJEB3084 SC SC 15 2296199 2019-04-18T16:01:32Z 2016-01-12T00:00:00.000 GPS_MW_1005892 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAYBE01 2010 GPSC96 substr. ST9476 2016-01-12T09:01:09Z Prokka current 15 GPS_MW_1005892-sc-2296199 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAYBE01 Scaffold SOURCE_DATABASE_GENBANK Malawi 2019-05-10 GPSC96 species_match 98.76 SAMEA4388056 4 Streptococcus pneumoniae 91.75 Streptococcus pneumoniae PRJEB3084 4 na 231079 type Streptococcus pneumoniae 2019-05-14 4 4 Homo sapiens 2065 Streptococcus pneumoniae Streptococcus pneumoniae ERS1299505 SC 2008 2017-01-12T16:15:21.136 2098889 91.75 1313 2118 Streptococcus pneumoniae 2024-02-06T15:51:08.000 2098889 231079 2098887 CSF Homo sapiens MENINGITIS from large multi-isolate project ST770 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901311895.1 type CSF 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAZFA000000000.1 2017-01-11T12:01:28Z GCA_901311895.1 haploid public 407e8ce0-5a14-11e6-af69-3c4a9275d6c8 87.76 32 2017-01-12T17:15:57.357 GCA_053203845.1 830680 53 21127_2#60 407e8ce0-5a14-11e6-af69-3c4a9275d6c8 Brazil 21127_2#60 SAMEA4388056 1313 Generic.1.0 87.76 SRA category_na live 2019-04-18T15:32:11Z GPSC249 PRJEB3084 SC SC 32 2741156 2019-04-18T15:32:11Z 2017-01-11T00:00:00.000 GPS_BR_0694_08 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAZFA01 2008 GPSC249 substr. ST770 2017-01-11T12:01:28Z Prokka current 32 407e8ce0-5a14-11e6-af69-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAZFA01 Contig SOURCE_DATABASE_GENBANK Brazil 2019-05-14 GPSC249 species_match 98.78 SAMEA2797067 4 Streptococcus pneumoniae 92.14 Streptococcus pneumoniae PRJEB3084 4 na 244046 type Streptococcus pneumoniae 2019-05-11 2 2 Homo sapiens 2012 Streptococcus pneumoniae Streptococcus pneumoniae ERS558678 SC 2005 2015-02-09T18:12:23.333 2035780 92.14 1313 2057 Streptococcus pneumoniae 2024-02-06T15:51:01.000 2037903 219354 2035779 blood Homo sapiens IPD from large multi-isolate project ST74 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901324505.1 type blood 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABBBC000000000.1 2015-02-03T09:31:31Z GCA_901324505.1 haploid public GPS_US_PATH3615-sc-2139094 85.49 32 2018-03-10T19:34:44 GCA_053203845.1 807257 45 14723_1#89 GPS_US_PATH3615-sc-2139094 Bangladesh 14723_1#89 SAMEA2797067 1313 Generic.1.0 85.49 SRA category_na live 2019-04-18T15:32:09Z GPSC96 PRJEB3084 SC SC 24 2139094 2019-04-18T15:32:09Z 2015-02-03T00:00:00.000 PATH3615 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABBBC01 2005 GPSC96 substr. ST74 2015-02-03T09:31:31Z Prokka current 24 GPS_US_PATH3615-sc-2139094 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABBBC01 Scaffold SOURCE_DATABASE_GENBANK Bangladesh 2019-05-11 GPSC96 species_match 98.72 SAMEA3381552 4 Streptococcus pneumoniae 93.1 Streptococcus pneumoniae PRJEB3084 4 na 202403 type Streptococcus pneumoniae 2019-05-11 3 3 Homo sapiens 2015 Streptococcus pneumoniae Streptococcus pneumoniae ERS719811 SC 2010 2015-12-16T09:08:10.593 2020749 93.1 1313 2067 Streptococcus pneumoniae 2024-02-06T15:54:18.000 2020815 202403 2020748 NP swab Homo sapiens Carriage from large multi-isolate project ST180 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901317445.1 type NP swab 98.79 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABAAB000000000.1 2015-12-15T09:25:20Z GCA_901317445.1 haploid public GPS_GM_2075-sc-2279430 89.12 20 2018-03-10T20:14:02 GCA_001457635.1 804046 52 17794_8#41 GPS_GM_2075-sc-2279430 Gambia 17794_8#41 SAMEA3381552 1313 Generic.1.0 89.12 SRA category_na live 2019-04-18T15:39:12Z GPSC12 PRJEB3084 SC SC 19 2279430 2019-04-18T15:39:12Z 2015-12-15T00:00:00.000 482603 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABAAB01 2010 GPSC12 substr. ST180 2015-12-15T09:25:20Z Prokka current 19 GPS_GM_2075-sc-2279430 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABAAB01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-11 GPSC12 species_match 98.79 SAMEA104154805 5 Streptococcus pneumoniae 91.98 Streptococcus pneumoniae PRJEB3084 5 na 182327 type Streptococcus pneumoniae 2019-05-15 4 4 Homo sapiens 2051 Streptococcus pneumoniae Streptococcus pneumoniae ERS1813823 SC 2013 2017-08-10T16:10:36.810 2091629 91.98 1313 2100 Streptococcus pneumoniae 2024-02-06T15:51:22.000 2092391 2245STDY6655138 182327 2091627 blood Homo sapiens BACTERAEMIA from large multi-isolate project ST770 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901299825.1 type Streptococcus pneumoniae blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAXKU000000000.1 2017-08-08T13:54:45Z GCA_901299825.1 haploid public 72fedab0-c37a-11e6-b158-3c4a9275d6c8 87.67 38 2017-08-10T17:10:48.473 GCA_053203845.1 828573 49 21999_8#91 72fedab0-c37a-11e6-b158-3c4a9275d6c8 Brazil 21999_8#91 SAMEA104154805 1313 Generic.1.0 87.67 SRA category_na live 2019-04-18T15:32:14Z GPSC249 PRJEB3084 SC SC 35 2869041 2019-04-18T15:32:14Z 2017-08-08T00:00:00.000 0820_13 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAXKU01 2013 GPSC249 substr. ST770 2017-08-08T13:54:45Z Prokka current 35 72fedab0-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAXKU01 Scaffold SOURCE_DATABASE_GENBANK Brazil 2019-05-15 GPSC249 species_match 98.79 SAMEA2627357 3 Streptococcus pneumoniae 93.87 Streptococcus pneumoniae PRJEB3084 4 na 343575 type Streptococcus pneumoniae 2019-05-10 2 2 Homo sapiens 1984 Streptococcus pneumoniae Streptococcus pneumoniae ERS497256 SC 2002 2015-01-29T08:36:49.093 2002992 93.87 1313 2030 Streptococcus pneumoniae 2024-02-06T15:53:25.000 2004904 179457 2002992 cerebrospinal fluid Homo sapiens Meningitis from large multi-isolate project ST11692 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901278605.1 type cerebrospinal fluid 98.77 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAUIC000000000.1 2015-01-08T09:39:41Z GCA_901278605.1 haploid public GPS_GM_0457-sc-2003295 89.07 31 2018-03-10T19:27:24 GCA_001457635.1 797762 46 14410_7#24 GPS_GM_0457-sc-2003295 Gambia 14410_7#24 SAMEA2627357 1313 Generic.1.0 89.07 SRA category_na live 2019-04-18T15:39:00Z GPSC96 PRJEB3084 SC SC 23 2003295 2019-04-18T15:39:00Z 2015-01-08T00:00:00.000 GPS_GM_0457 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAUIC01 2002 GPSC96 substr. ST11692 2015-01-08T09:39:41Z Prokka current 23 GPS_GM_0457-sc-2003295 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAUIC01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-10 GPSC96 species_match 98.77 SAMEA3381568 4 Streptococcus pneumoniae 88.86 Streptococcus pneumoniae PRJEB3084 4 na 178792 type Streptococcus pneumoniae 2019-05-13 3 3 Homo sapiens 2064 Streptococcus pneumoniae Streptococcus pneumoniae ERS719827 SC 2010 2015-12-16T09:08:11.750 2078748 88.86 1313 2111 Streptococcus pneumoniae 2024-02-06T15:54:19.000 2078748 178792 2078747 NP swab Homo sapiens Carriage from large multi-isolate project ST260 EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901262025.1 type NP swab 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAARWM000000000.1 2015-12-15T09:25:20Z GCA_901262025.1 haploid public GPS_GM_2083-sc-2279446 88.27 23 2018-03-10T20:14:03 GCA_001679515.1 820574 47 17794_7#21 GPS_GM_2083-sc-2279446 Gambia 17794_7#21 SAMEA3381568 1313 Generic.1.0 88.27 SRA category_na live 2019-04-18T15:39:12Z GPSC83 PRJEB3084 SC SC 23 2279446 2019-04-18T15:39:12Z 2015-12-15T00:00:00.000 487414 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAARWM01 2010 GPSC83 substr. ST260 2015-12-15T09:25:20Z Prokka current 23 GPS_GM_2083-sc-2279446 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAARWM01 Contig SOURCE_DATABASE_GENBANK Gambia 2019-05-13 GPSC83 species_match 98.71 SAMEA3176148 3 Streptococcus pneumoniae 95.15 Streptococcus pneumoniae PRJEB3084 5 na 218489 type Streptococcus pneumoniae 2019-05-10 3 3 Homo sapiens 1962 Streptococcus pneumoniae Streptococcus pneumoniae ERS629096 SC 2012 2015-05-22T09:07:08.276 1975325 95.15 1313 2007 Streptococcus pneumoniae 2024-02-06T15:58:43.000 1977700 168877 1975325 blood Homo sapiens sepsis/pneumonia from large multi-isolate project ST180 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901275505.1 type blood 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAATWH000000000.1 2015-05-19T13:43:10Z GCA_901275505.1 haploid public GPS_PL_6051_12-sc-2191207 89.03 28 2018-03-10T19:49:23 GCA_001457635.1 784971 45 15682_2#33 GPS_PL_6051_12-sc-2191207 Poland 15682_2#33 SAMEA3176148 1313 Generic.1.0 89.03 SRA category_na live 2019-04-18T16:01:13Z GPSC12 PRJEB3084 SC SC 18 2191207 2019-04-18T16:01:13Z 2015-05-19T00:00:00.000 8259 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAATWH01 2012 GPSC12 substr. ST180 2015-05-19T13:43:10Z Prokka current 18 GPS_PL_6051_12-sc-2191207 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAATWH01 Scaffold SOURCE_DATABASE_GENBANK Poland 2019-05-10 GPSC12 species_match 98.81 SAMEA3173010 5 Streptococcus pneumoniae 94.5 Streptococcus pneumoniae PRJEB3084 5 na 193798 type Streptococcus pneumoniae 2019-05-10 2 2 Homo sapiens 1949 Streptococcus pneumoniae Streptococcus pneumoniae ERS627253 SC 2014 2015-05-07T17:09:39.650 1978392 94.5 1313 1994 Streptococcus pneumoniae 2024-02-06T15:53:48.000 1980272 158862 1978391 blood Homo sapiens Meningitis from large multi-isolate project ST74 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901335895.1 type blood 98.7 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABCSW000000000.1 2015-05-06T09:17:00Z GCA_901335895.1 haploid public GPS_GM_1154-sc-2190569 85.2 36 2018-03-10T19:47:01 GCA_053203845.1 786654 45 15531_6#67 GPS_GM_1154-sc-2190569 Gambia 15531_6#67 SAMEA3173010 1313 Generic.1.0 85.2 SRA category_na live 2019-04-18T15:39:06Z GPSC96 PRJEB3084 SC SC 28 2190569 2019-04-18T15:39:06Z 2015-05-06T00:00:00.000 BS19869I3 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABCSW01 2014 GPSC96 substr. ST74 2015-05-06T09:17:00Z Prokka current 28 GPS_GM_1154-sc-2190569 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABCSW01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-10 GPSC96 species_match 98.7 SAMEA2783662 4 Streptococcus pneumoniae 95.28 Streptococcus pneumoniae PRJEB3084 5 na 193645 type Streptococcus pneumoniae 2019-05-10 2 2 Homo sapiens 1949 Streptococcus pneumoniae Streptococcus pneumoniae ERS553407 SC 2004 2015-03-04T08:09:18.623 1974280 95.28 1313 1994 Streptococcus pneumoniae 2024-02-06T15:52:50.000 1974457 153070 1974280 CSF Homo sapiens meningitis from large multi-isolate project ST9476 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901260185.1 type CSF 98.8 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAARPD000000000.1 2015-03-03T09:52:28Z GCA_901260185.1 haploid public GPS_MW_C10270_R1-sc-2022157 89.11 28 2018-03-10T19:37:24 GCA_001457635.1 785365 45 14936_5#36 GPS_MW_C10270_R1-sc-2022157 Malawi 14936_5#36 SAMEA2783662 1313 Generic.1.0 89.11 SRA category_na live 2019-04-18T15:32:37Z GPSC96 PRJEB3084 SC SC 27 2022157 2019-04-18T15:32:37Z 2015-03-03T00:00:00.000 GPS_MW_C10270_R1 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAARPD01 2004 GPSC96 substr. ST9476 2015-03-03T09:52:28Z Prokka current 27 GPS_MW_C10270_R1-sc-2022157 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAARPD01 Scaffold SOURCE_DATABASE_GENBANK Malawi 2019-05-10 GPSC96 species_match 98.8 SAMEA2383064 4 Streptococcus pneumoniae 94.72 Streptococcus pneumoniae 1313 PRJEB4909 5 current na 218720 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2023 Streptococcus pneumoniae Streptococcus pneumoniae ERS409389 SC 2006/2012 v1.2.4 2014-07-17T08:09:30.280 98.84 2012996 94.72 1313 2065 2024-02-06T06:50:33.000 2016061 169294 2012993 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900023145.1 type blood 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FEGI00000000.1 2014-07-16T11:40:13Z GCA_900023145.1 haploid public 2093090_II-sc-1870314 90.32 0.62 34 2018-03-10T19:06:24 GCA_001457635.1 799744 42 12754_2#44 2093090_II-sc-1870314 Netherlands 12754_2#44 SAMEA2383064 1313 GCF_900023145.1 Generic.1.0 90.32 SRA GCF_900023145.1 category_na live 2018-03-09T10:42:14Z 2842STDY5753609 PRJEB4909 GCF_900023145.1-RS_2025_09_21 SC SC 23 1870314 2018-03-09T10:42:14Z 2014-07-16T00:00:00.000 2093090_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEGI01 2006/2012 2842STDY5753609 2014-07-16T11:40:13Z Prokka current 23 2093090_II-sc-1870314 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEGI01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753609 species_match 98.77 SAMEA2383064 4 Streptococcus pneumoniae 94.72 Streptococcus pneumoniae 1313 PRJEB4909 5 current na Best-placed reference protein set; GeneMarkS-2+ 218720 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1900 Streptococcus pneumoniae Streptococcus pneumoniae ERS409389 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:30.280 98.84 2012996 94.72 1313 2129 2024-02-06T06:50:33.000 2016061 169294 2012993 blood Homo sapiens Streptococcus pneumoniae Disease 180 EBI 100 GCA_001457635.1 GCF_900023145.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900023145.1 type blood 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FEGI00000000.1 2014-07-16T11:40:13Z GCF_900023145.1 haploid public 2093090_II-sc-1870314 90.32 0.62 34 2018-03-10T19:06:24 GCA_001457635.1 799744 49 12754_2#44 2093090_II-sc-1870314 Netherlands 12754_2#44 SAMEA2383064 1313 GCA_900023145.1 Generic.1.0 90.32 SRA GCA_900023145.1 category_na live 2018-03-09T10:42:14Z 2842STDY5753609 PRJEB4909 Annotation submitted by SC SC SC 23 1870314 2018-03-09T10:42:14Z 2014-07-16T00:00:00.000 2093090_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEGI01 2006/2012 2842STDY5753609 6.10 2014-07-16T11:40:13Z Prokka current 23 2093090_II-sc-1870314 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEGI01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753609 species_match 98.77 SAMEA2382961 3 Streptococcus pneumoniae 95.08 Streptococcus pneumoniae 1313 PRJEB4909 5 current na 218483 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1958 Streptococcus pneumoniae Streptococcus pneumoniae ERS409286 SC 2006/2012 v1.2.4 2014-07-17T08:09:25.430 98.84 1977535 95.08 1313 2003 2024-02-06T07:00:24.000 1981067 143720 1977535 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900047865.1 type blood 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FDNB00000000.1 2014-07-16T11:40:12Z GCA_900047865.1 haploid public 2080565_II-sc-1870210 89.07 0.62 32 2015-08-10T19:44:11 GCA_001457635.1 785792 45 12754_1#36 2080565_II-sc-1870210 Netherlands 12754_1#36 SAMEA2382961 1313 GCF_900047865.1 Generic.1.0 89.07 SRA GCF_900047865.1 category_na live 2018-03-09T10:43:51Z 2842STDY5753505 PRJEB4909 GCF_900047865.1-RS_2025_09_21 SC SC 19 1870210 2018-03-09T10:43:51Z 2014-07-16T00:00:00.000 2080565_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDNB01 2006/2012 2842STDY5753505 2014-07-16T11:40:12Z Prokka current 19 2080565_II-sc-1870210 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDNB01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753505 species_match 98.81 SAMEA2382961 3 Streptococcus pneumoniae 95.08 Streptococcus pneumoniae 1313 PRJEB4909 5 current na Best-placed reference protein set; GeneMarkS-2+ 218483 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1856 Streptococcus pneumoniae Streptococcus pneumoniae ERS409286 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:25.430 98.84 1977535 95.08 1313 2079 2024-02-06T07:00:24.000 1981067 143720 1977535 blood Homo sapiens Streptococcus pneumoniae Disease 171 EBI 100 GCA_001457635.1 GCF_900047865.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900047865.1 type blood 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FDNB00000000.1 2014-07-16T11:40:12Z GCF_900047865.1 haploid public 2080565_II-sc-1870210 89.07 0.62 32 2015-08-10T19:44:11 GCA_001457635.1 785792 52 12754_1#36 2080565_II-sc-1870210 Netherlands 12754_1#36 SAMEA2382961 1313 GCA_900047865.1 Generic.1.0 89.07 SRA GCA_900047865.1 category_na live 2018-03-09T10:43:51Z 2842STDY5753505 PRJEB4909 Annotation submitted by SC SC SC 19 1870210 2018-03-09T10:43:51Z 2014-07-16T00:00:00.000 2080565_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDNB01 2006/2012 2842STDY5753505 6.10 2014-07-16T11:40:12Z Prokka current 19 2080565_II-sc-1870210 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDNB01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753505 species_match 98.81 SAMEA1025314 6 Streptococcus pneumoniae 91.62 Streptococcus pneumoniae 1313 PRJEB2395 6 current na 118974 type Streptococcus pneumoniae 2015-07-17 3 3 species Homo sapiens 1999 Streptococcus pneumoniae Streptococcus pneumoniae ERS020894 SC 2009-03-26 v1.2.4 2012-01-20T19:57:42.166 98.53 2041596 91.62 1313 2039 2024-02-05T16:14:52.000 2041639 118974 2041584 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001113225.1 type nasopharynx 98.77 OK 39.5 Streptococcus pneumoniae 19.1729 https://www.ncbi.nlm.nih.gov/nuccore/CQVB00000000.1 2011-11-15T09:28:16Z GCA_001113225.1 haploid public SMRU1384-sc-2011-01-27-1061597 85.24 0.31 36 2015-07-28T08:11:39 GCA_053203845.1 810090 40 6710_7#16 SMRU1384-sc-2011-01-27-1061597 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025314 1313 GCF_001113225.1 Generic.1.0 85.24 SRA GCF_001113225.1 category_na live 2018-03-09T09:52:53Z SMRU1384 PRJEB2395 GCF_001113225.1-RS_2026_01_20 SC SC 34 2018-03-09T09:52:53Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQVB01 2009-03-26 SMRU1384 2011-11-15T09:28:16Z Prokka current 34 SMRU1384-sc-2011-01-27-1061597 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQVB01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1384 species_match 98.77 SAMEA1025314 6 Streptococcus pneumoniae 91.62 Streptococcus pneumoniae 1313 PRJEB2395 6 current na Best-placed reference protein set; GeneMarkS-2+ 118974 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-20 3 3 species Homo sapiens 1890 Streptococcus pneumoniae Streptococcus pneumoniae ERS020894 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-26 v1.2.4 2012-01-20T19:57:42.166 98.53 2041596 91.62 1313 2102 2024-02-05T16:14:52.000 2041639 118974 2041584 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 170 EBI 100 GCA_053203845.1 GCF_001113225.1-RS_2026_01_20 SLX Streptococcus pneumoniae GCF_001113225.1 type nasopharynx 98.77 OK 39.5 Streptococcus pneumoniae 19.1729 https://www.ncbi.nlm.nih.gov/nuccore/CQVB00000000.1 2011-11-15T09:28:16Z GCF_001113225.1 haploid public SMRU1384-sc-2011-01-27-1061597 85.24 0.31 36 2015-07-28T08:11:39 GCA_053203845.1 810090 42 6710_7#16 SMRU1384-sc-2011-01-27-1061597 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025314 1313 GCA_001113225.1 Generic.1.0 85.24 SRA GCA_001113225.1 category_na live 2018-03-09T09:52:53Z SMRU1384 PRJEB2395 Annotation submitted by SC SC SC 34 2018-03-09T09:52:53Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQVB01 2009-03-26 SMRU1384 6.10 2011-11-15T09:28:16Z Prokka current 34 SMRU1384-sc-2011-01-27-1061597 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQVB01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1384 species_match 98.77 SAMEA2383029 5 Streptococcus pneumoniae 94.76 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 177925 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2022 Streptococcus pneumoniae Streptococcus pneumoniae ERS409354 SC 2006/2012 v1.2.4 2014-07-17T08:09:28.520 98.0 2011511 94.76 1313 2063 2024-02-06T06:52:11.000 2015304 99509 2011509 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900032335.1 type blood 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae 7.16984 https://www.ncbi.nlm.nih.gov/nuccore/FDPN00000000.1 2014-07-16T11:40:12Z GCA_900032335.1 haploid public 2090521_II-sc-1870279 90.29 0.62 37 2015-08-10T19:44:15 GCA_001457635.1 799183 41 12754_2#9 2090521_II-sc-1870279 Netherlands 12754_2#9 SAMEA2383029 1313 GCF_900032335.1 Generic.1.0 90.29 SRA GCF_900032335.1 category_na live 2018-03-09T10:42:30Z 2842STDY5753574 PRJEB4909 GCF_900032335.1-RS_2025_09_21 SC SC 23 1870279 2018-03-09T10:42:30Z 2014-07-16T00:00:00.000 2090521_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDPN01 2006/2012 2842STDY5753574 2014-07-16T11:40:12Z Prokka current 23 2090521_II-sc-1870279 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDPN01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753574 species_match 98.77 SAMEA2383029 5 Streptococcus pneumoniae 94.76 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 177925 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1888 Streptococcus pneumoniae Streptococcus pneumoniae ERS409354 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:28.520 98.0 2011511 94.76 1313 2121 2024-02-06T06:52:11.000 2015304 99509 2011509 blood Homo sapiens Streptococcus pneumoniae Disease 185 EBI 100 GCA_001457635.1 GCF_900032335.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900032335.1 type blood 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae 7.16984 https://www.ncbi.nlm.nih.gov/nuccore/FDPN00000000.1 2014-07-16T11:40:12Z GCF_900032335.1 haploid public 2090521_II-sc-1870279 90.29 0.62 37 2015-08-10T19:44:15 GCA_001457635.1 799183 48 12754_2#9 2090521_II-sc-1870279 Netherlands 12754_2#9 SAMEA2383029 1313 GCA_900032335.1 Generic.1.0 90.29 SRA GCA_900032335.1 category_na live 2018-03-09T10:42:30Z 2842STDY5753574 PRJEB4909 Annotation submitted by SC SC SC 23 1870279 2018-03-09T10:42:30Z 2014-07-16T00:00:00.000 2090521_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDPN01 2006/2012 2842STDY5753574 6.10 2014-07-16T11:40:12Z Prokka current 23 2090521_II-sc-1870279 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDPN01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753574 species_match 98.77 SAMEA2335996 9 Streptococcus pneumoniae 91.32 Streptococcus pneumoniae 1313 PRJEB3084 9 current na 88407 type Streptococcus pneumoniae 2019-05-22 4 4 species Homo sapiens 2059 Streptococcus pneumoniae Streptococcus pneumoniae ERS394190 SC 2009 v1.2.4 2014-05-20T08:07:32.440 99.06 2099275 91.32 1313 2108 Streptococcus pneumoniae 2024-02-06T15:54:54.000 2100270 88407 2099270 blood Homo sapiens Streptococcus pneumoniae IPD ST899 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900053545.2 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/FHKQ00000000.2 2014-05-19T10:21:07Z GCA_900053545.2 haploid public 2009203268-sc-1810924 87.36 0.62 57 2015-08-10T19:29:23 GCA_053203845.1 829788 49 12291_4#64 2009203268-sc-1810924 USA 12291_4#64 SAMEA2335996 1313 GCF_900053545.2 Generic.1.0 87.36 SRA GCF_900053545.2 category_na live 2019-04-18T15:39:20Z GPSC27 PRJEB3084 GCF_900053545.2-RS_2026_01_20 SC SC 53 1810924 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2009203268 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHKQ02 2009 2245STDY5699089 2014-05-19T10:21:07Z Prokka current 53 2009203268-sc-1810924 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHKQ02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-22 GPSC27 species_match 98.85 SAMEA2335996 9 Streptococcus pneumoniae 91.32 Streptococcus pneumoniae 1313 PRJEB3084 9 current na Best-placed reference protein set; GeneMarkS-2+ 88407 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-20 4 4 species Homo sapiens 1973 Streptococcus pneumoniae Streptococcus pneumoniae ERS394190 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-05-20T08:07:32.440 99.06 2099275 91.32 1313 2197 Streptococcus pneumoniae 2024-02-06T15:54:54.000 2100270 88407 2099270 blood Homo sapiens Streptococcus pneumoniae IPD 170 ST899 EBI 100 GCA_053203845.1 GCF_900053545.2-RS_2026_01_20 SLX Streptococcus pneumoniae GCF_900053545.2 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/FHKQ00000000.2 2014-05-19T10:21:07Z GCF_900053545.2 haploid public 2009203268-sc-1810924 87.36 0.62 57 2015-08-10T19:29:23 GCA_053203845.1 829788 54 12291_4#64 2009203268-sc-1810924 USA 12291_4#64 SAMEA2335996 1313 GCA_900053545.2 Generic.1.0 87.36 SRA GCA_900053545.2 category_na live 2019-04-18T15:39:20Z GPSC27 PRJEB3084 Annotation submitted by SC SC SC 53 1810924 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2009203268 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHKQ02 2009 GPSC27 substr. ST899 6.10 2014-05-19T10:21:07Z Prokka current 53 2009203268-sc-1810924 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHKQ02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-22 GPSC27 species_match 98.85 SAMEA1023694 5 Streptococcus pneumoniae 90.62 Streptococcus pneumoniae 1313 PRJEB2357 5 current na 86819 type Streptococcus pneumoniae 2015-07-11 3 3 species Homo sapiens 2015 Streptococcus pneumoniae Streptococcus pneumoniae ERS019380 SC 2008-03-24 v1.2.4 2012-01-20T19:43:29.953 98.53 2060234 90.62 1313 2055 2024-02-05T16:19:16.000 2060234 86819 2060228 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001154085.1 type nasopharynx 98.78 OK 40.0 Streptococcus pneumoniae 19.1729 https://www.ncbi.nlm.nih.gov/nuccore/CKNU00000000.1 2011-10-25T09:28:11Z GCA_001154085.1 haploid public SMRU222-sc-2011-01-27-1060411 85.08 4.19 39 2016-01-29T08:05:28 GCA_053203845.1 821686 40 6664_1#6 SMRU222-sc-2011-01-27-1060411 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023694 1313 GCF_001154085.1 Generic.1.0 85.08 SRA GCF_001154085.1 category_na live 2018-03-09T09:52:56Z SMRU222 PRJEB2357 GCF_001154085.1-RS_2026_01_19 SC SC 39 2018-03-09T09:52:56Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKNU01 2008-03-24 3 2011-10-25T09:28:11Z Prokka current 39 SMRU222-sc-2011-01-27-1060411 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKNU01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU222 species_match 98.78 SAMEA1023694 5 Streptococcus pneumoniae 90.62 Streptococcus pneumoniae 1313 PRJEB2357 5 current na Best-placed reference protein set; GeneMarkS-2+ 86819 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 3 3 species Homo sapiens 1911 Streptococcus pneumoniae Streptococcus pneumoniae ERS019380 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-03-24 v1.2.4 2012-01-20T19:43:29.953 98.53 2060234 90.62 1313 2121 2024-02-05T16:19:16.000 2060234 86819 2060228 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 166 EBI 100 GCA_053203845.1 GCF_001154085.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001154085.1 type nasopharynx 98.78 OK 40.0 Streptococcus pneumoniae 19.1729 https://www.ncbi.nlm.nih.gov/nuccore/CKNU00000000.1 2011-10-25T09:28:11Z GCF_001154085.1 haploid public SMRU222-sc-2011-01-27-1060411 85.08 4.19 39 2016-01-29T08:05:28 GCA_053203845.1 821686 44 6664_1#6 SMRU222-sc-2011-01-27-1060411 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023694 1313 GCA_001154085.1 Generic.1.0 85.08 SRA GCA_001154085.1 category_na live 2018-03-09T09:52:56Z SMRU222 PRJEB2357 Annotation submitted by SC SC SC 39 2018-03-09T09:52:56Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKNU01 2008-03-24 SMRU222 6.10 2011-10-25T09:28:11Z Prokka current 39 SMRU222-sc-2011-01-27-1060411 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKNU01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU222 species_match 98.78 SAMEA1024203 10 Streptococcus pneumoniae 91.76 Streptococcus pneumoniae 1313 PRJEB2357 10 current na 72876 type Streptococcus pneumoniae 2015-07-11 4 4 species Homo sapiens 2051 Streptococcus pneumoniae Streptococcus pneumoniae ERS019256 SC 2008-02-12 v1.2.4 2012-01-20T19:42:07.170 99.05 2073879 91.76 1313 2093 2024-02-06T09:04:02.000 2073879 72876 2073874 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001116965.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 51.1363 https://www.ncbi.nlm.nih.gov/nuccore/CKCH00000000.1 2011-10-11T09:20:04Z GCA_001116965.1 haploid public SMRU98-sc-2011-01-27-1060287 90.15 0.36 51 2016-01-29T08:05:16 GCA_001457635.1 821685 42 6593_4#2 SMRU98-sc-2011-01-27-1060287 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024203 1313 GCF_001116965.1 Generic.1.0 90.15 SRA GCF_001116965.1 category_na live 2018-03-09T12:06:35Z SMRU98 PRJEB2357 GCF_001116965.1-RS_2026_01_14 SC SC 51 2018-03-09T12:06:35Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKCH01 2008-02-12 4 2011-10-11T09:20:04Z Prokka current 51 SMRU98-sc-2011-01-27-1060287 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKCH01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU98 species_match 98.76 SAMEA1024203 10 Streptococcus pneumoniae 91.76 Streptococcus pneumoniae 1313 PRJEB2357 10 current na Best-placed reference protein set; GeneMarkS-2+ 72876 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-14 4 4 species Homo sapiens 1981 Streptococcus pneumoniae Streptococcus pneumoniae ERS019256 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-02-12 v1.2.4 2012-01-20T19:42:07.170 99.05 2073879 91.76 1313 2186 2024-02-06T09:04:02.000 2073879 72876 2073874 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 159 EBI 100 GCA_001457635.1 GCF_001116965.1-RS_2026_01_14 SLX Streptococcus pneumoniae GCF_001116965.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 51.1363 https://www.ncbi.nlm.nih.gov/nuccore/CKCH00000000.1 2011-10-11T09:20:04Z GCF_001116965.1 haploid public SMRU98-sc-2011-01-27-1060287 90.15 0.36 51 2016-01-29T08:05:16 GCA_001457635.1 821685 46 6593_4#2 SMRU98-sc-2011-01-27-1060287 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024203 1313 GCA_001116965.1 Generic.1.0 90.15 SRA GCA_001116965.1 category_na live 2018-03-09T12:06:35Z SMRU98 PRJEB2357 Annotation submitted by SC SC SC 51 2018-03-09T12:06:35Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKCH01 2008-02-12 SMRU98 6.10 2011-10-11T09:20:04Z Prokka current 51 SMRU98-sc-2011-01-27-1060287 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKCH01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU98 species_match 98.76 SAMEA1025585 10 Streptococcus pneumoniae 90.2 Streptococcus pneumoniae 1313 PRJEB2395 10 current na 70655 type Streptococcus pneumoniae 2015-07-24 4 4 species Homo sapiens 2067 Streptococcus pneumoniae Streptococcus pneumoniae ERS020775 SC 2009-02-10 v1.2.4 2012-01-20T19:56:26.080 99.28 2109914 90.2 1313 2108 2024-02-05T16:24:06.000 2109914 70655 2109901 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001342595.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 78.4969 https://www.ncbi.nlm.nih.gov/nuccore/CHHE00000000.1 2011-11-15T17:01:01Z GCA_001342595.1 haploid public SMRU1265-sc-2011-01-27-1061478 90.15 1.88 57 2015-07-28T08:11:34 GCA_001457635.1 835982 41 6736_6#17 SMRU1265-sc-2011-01-27-1061478 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025585 1313 GCF_001342595.1 Generic.1.0 90.15 SRA GCF_001342595.1 category_na live 2018-03-09T09:53:00Z SMRU1265 PRJEB2395 GCF_001342595.1-RS_2026_01_07 SC SC 57 2018-03-09T09:53:00Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHHE01 2009-02-10 SMRU1265 2011-11-15T17:01:01Z Prokka current 57 SMRU1265-sc-2011-01-27-1061478 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHHE01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU1265 species_match 98.72 SAMEA1025585 10 Streptococcus pneumoniae 90.2 Streptococcus pneumoniae 1313 PRJEB2395 10 current na Best-placed reference protein set; GeneMarkS-2+ 70655 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-07 4 4 species Homo sapiens 2006 Streptococcus pneumoniae Streptococcus pneumoniae ERS020775 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-02-10 v1.2.4 2012-01-20T19:56:26.080 99.28 2109914 90.2 1313 2200 2024-02-05T16:24:06.000 2109914 70655 2109901 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 152 EBI 100 GCA_001457635.1 GCF_001342595.1-RS_2026_01_07 SLX Streptococcus pneumoniae GCF_001342595.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 78.4969 https://www.ncbi.nlm.nih.gov/nuccore/CHHE00000000.1 2011-11-15T17:01:01Z GCF_001342595.1 haploid public SMRU1265-sc-2011-01-27-1061478 90.15 1.88 57 2015-07-28T08:11:34 GCA_001457635.1 835982 42 6736_6#17 SMRU1265-sc-2011-01-27-1061478 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025585 1313 GCA_001342595.1 Generic.1.0 90.15 SRA GCA_001342595.1 category_na live 2018-03-09T09:53:00Z SMRU1265 PRJEB2395 Annotation submitted by SC SC SC 57 2018-03-09T09:53:00Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHHE01 2009-02-10 SMRU1265 6.10 2011-11-15T17:01:01Z Prokka current 57 SMRU1265-sc-2011-01-27-1061478 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHHE01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU1265 species_match 98.72 SAMEA2238660 8 Streptococcus pneumoniae 91.38 Streptococcus pneumoniae 1313 PRJEB4909 11 current na 83670 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2063 Streptococcus pneumoniae Streptococcus pneumoniae ERS367472 SC 2006/2012 v1.2.4 2014-05-07T08:34:47.556 98.94 2097746 91.38 1313 2110 2024-02-06T05:20:59.000 2099837 69731 2097744 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900022765.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FEDX00000000.1 2014-03-18T09:35:30Z GCA_900022765.1 haploid public 2091204-sc-2013-11-05T12:00:14Z-1750022 87.36 0.62 57 2015-08-10T19:24:21 GCA_053203845.1 829665 47 11861_1#94 2091204-sc-2013-11-05T12:00:14Z-1750022 Netherlands 11861_1#94 SAMEA2238660 1313 GCF_900022765.1 Generic.1.0 87.36 SRA GCF_900022765.1 category_na live 2018-03-09T10:29:35Z 2842STDY5644033 PRJEB4909 GCF_900022765.1-RS_2026_01_25 SC SC 47 1750022 2018-03-09T10:29:35Z 2014-03-18T00:00:00.000 2091204 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEDX01 2006/2012 2842STDY5644033 2014-03-18T09:35:30Z Prokka current 47 2091204-sc-2013-11-05T12:00:14Z-1750022 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEDX01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644033 species_match 98.84 SAMEA2238660 8 Streptococcus pneumoniae 91.38 Streptococcus pneumoniae 1313 PRJEB4909 11 current na Best-placed reference protein set; GeneMarkS-2+ 83670 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1975 Streptococcus pneumoniae Streptococcus pneumoniae ERS367472 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:47.556 98.94 2097746 91.38 1313 2190 2024-02-06T05:20:59.000 2099837 69731 2097744 CSF Homo sapiens Streptococcus pneumoniae Disease 163 EBI 100 GCA_053203845.1 GCF_900022765.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900022765.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FEDX00000000.1 2014-03-18T09:35:30Z GCF_900022765.1 haploid public 2091204-sc-2013-11-05T12:00:14Z-1750022 87.36 0.62 57 2015-08-10T19:24:21 GCA_053203845.1 829665 52 11861_1#94 2091204-sc-2013-11-05T12:00:14Z-1750022 Netherlands 11861_1#94 SAMEA2238660 1313 GCA_900022765.1 Generic.1.0 87.36 SRA GCA_900022765.1 category_na live 2018-03-09T10:29:35Z 2842STDY5644033 PRJEB4909 Annotation submitted by SC SC SC 47 1750022 2018-03-09T10:29:35Z 2014-03-18T00:00:00.000 2091204 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEDX01 2006/2012 2842STDY5644033 6.10 2014-03-18T09:35:30Z Prokka current 47 2091204-sc-2013-11-05T12:00:14Z-1750022 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEDX01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644033 species_match 98.84 SAMEA2239010 8 Streptococcus pneumoniae 91.26 Streptococcus pneumoniae 1313 PRJEB4909 11 current na 101125 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2076 Streptococcus pneumoniae Streptococcus pneumoniae ERS367822 SC 2006/2012 v1.2.4 2014-05-07T08:35:14.050 99.1 2109529 91.26 1313 2124 2024-02-06T09:23:30.000 2112183 66743 2109528 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900023675.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FCRO00000000.1 2014-03-18T09:35:30Z GCA_900023675.1 haploid public 982238-sc-2013-11-05T12:06:26Z-1750376 87.73 0.62 59 2018-03-10T18:56:53 GCA_053203845.1 833708 48 11861_4#64 982238-sc-2013-11-05T12:06:26Z-1750376 Netherlands 11861_4#64 SAMEA2239010 1313 GCF_900023675.1 Generic.1.0 87.73 SRA GCF_900023675.1 category_na live 2018-03-09T13:35:53Z 2842STDY5644387 PRJEB4909 GCF_900023675.1-RS_2025_12_28 SC SC 48 1750376 2018-03-09T13:35:53Z 2014-03-18T00:00:00.000 982238 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCRO01 2006/2012 2842STDY5644387 2014-03-18T09:35:30Z Prokka current 48 982238-sc-2013-11-05T12:06:26Z-1750376 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCRO01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644387 species_match 98.84 SAMEA2239010 8 Streptococcus pneumoniae 91.26 Streptococcus pneumoniae 1313 PRJEB4909 11 current na Best-placed reference protein set; GeneMarkS-2+ 101125 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-28 species Homo sapiens 1979 Streptococcus pneumoniae Streptococcus pneumoniae ERS367822 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:14.050 99.1 2109529 91.26 1313 2200 2024-02-06T09:23:30.000 2112183 66743 2109528 CSF Homo sapiens Streptococcus pneumoniae Disease 168 EBI 100 GCA_053203845.1 GCF_900023675.1-RS_2025_12_28 SLX Streptococcus pneumoniae GCF_900023675.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FCRO00000000.1 2014-03-18T09:35:30Z GCF_900023675.1 haploid public 982238-sc-2013-11-05T12:06:26Z-1750376 87.73 0.62 59 2018-03-10T18:56:53 GCA_053203845.1 833708 53 11861_4#64 982238-sc-2013-11-05T12:06:26Z-1750376 Netherlands 11861_4#64 SAMEA2239010 1313 GCA_900023675.1 Generic.1.0 87.73 SRA GCA_900023675.1 category_na live 2018-03-09T13:35:53Z 2842STDY5644387 PRJEB4909 Annotation submitted by SC SC SC 48 1750376 2018-03-09T13:35:53Z 2014-03-18T00:00:00.000 982238 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCRO01 2006/2012 2842STDY5644387 6.10 2014-03-18T09:35:30Z Prokka current 48 982238-sc-2013-11-05T12:06:26Z-1750376 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCRO01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644387 species_match 98.84 SAMEA2238725 4 Streptococcus pneumoniae 94.52 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 196654 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1958 Streptococcus pneumoniae Streptococcus pneumoniae ERS367537 SC 2006/2012 v1.2.4 2014-05-07T08:34:52.986 99.07 1997682 94.52 1313 2003 2024-02-06T05:02:58.000 2000418 102986 1997682 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900025835.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 53.4217 https://www.ncbi.nlm.nih.gov/nuccore/FEFI00000000.1 2014-03-18T09:35:30Z GCA_900025835.1 haploid public 2094236-sc-2013-11-05T12:01:22Z-1750087 86.05 0.31 32 2015-08-10T19:24:23 GCA_053203845.1 791450 45 11861_2#65 2094236-sc-2013-11-05T12:01:22Z-1750087 Netherlands 11861_2#65 SAMEA2238725 1313 GCF_900025835.1 Generic.1.0 86.05 SRA GCF_900025835.1 category_na live 2018-03-09T10:27:29Z 2842STDY5644098 PRJEB4909 GCF_900025835.1-RS_2025_09_21 SC SC 22 1750087 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2094236 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEFI01 2006/2012 2842STDY5644098 2014-03-18T09:35:30Z Prokka current 22 2094236-sc-2013-11-05T12:01:22Z-1750087 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEFI01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644098 species_match 98.86 SAMEA2238725 4 Streptococcus pneumoniae 94.52 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 196654 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1857 Streptococcus pneumoniae Streptococcus pneumoniae ERS367537 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:52.986 99.07 1997682 94.52 1313 2065 2024-02-06T05:02:58.000 2000418 102986 1997682 CSF Homo sapiens Streptococcus pneumoniae Disease 157 EBI 100 GCA_053203845.1 GCF_900025835.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900025835.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 53.4217 https://www.ncbi.nlm.nih.gov/nuccore/FEFI00000000.1 2014-03-18T09:35:30Z GCF_900025835.1 haploid public 2094236-sc-2013-11-05T12:01:22Z-1750087 86.05 0.31 32 2015-08-10T19:24:23 GCA_053203845.1 791450 51 11861_2#65 2094236-sc-2013-11-05T12:01:22Z-1750087 Netherlands 11861_2#65 SAMEA2238725 1313 GCA_900025835.1 Generic.1.0 86.05 SRA GCA_900025835.1 category_na live 2018-03-09T10:27:29Z 2842STDY5644098 PRJEB4909 Annotation submitted by SC SC SC 22 1750087 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2094236 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEFI01 2006/2012 2842STDY5644098 6.10 2014-03-18T09:35:30Z Prokka current 22 2094236-sc-2013-11-05T12:01:22Z-1750087 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEFI01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644098 species_match 98.86 SAMEA2238381 6 Streptococcus pneumoniae 93.18 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 113606 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1995 Streptococcus pneumoniae Streptococcus pneumoniae ERS367193 SC 2006/2012 v1.2.4 2014-05-07T08:34:22.733 98.76 2011925 93.18 1313 2037 2024-02-06T05:19:23.000 2013924 88890 2011924 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900046615.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 30.6767 https://www.ncbi.nlm.nih.gov/nuccore/FDXW00000000.1 2014-03-18T09:35:30Z GCA_900046615.1 haploid public 2070508-sc-2013-11-05T11:55:30Z-1749740 85.44 0.31 38 2015-08-10T19:24:10 GCA_053203845.1 798159 42 11860_5#12 2070508-sc-2013-11-05T11:55:30Z-1749740 Netherlands 11860_5#12 SAMEA2238381 1313 GCF_900046615.1 Generic.1.0 85.44 SRA GCF_900046615.1 category_na live 2018-03-09T10:29:24Z 2842STDY5643751 PRJEB4909 GCF_900046615.1-RS_2026_01_25 SC SC 29 1749740 2018-03-09T10:29:24Z 2014-03-18T00:00:00.000 2070508 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDXW01 2006/2012 2842STDY5643751 2014-03-18T09:35:30Z Prokka current 29 2070508-sc-2013-11-05T11:55:30Z-1749740 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDXW01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643751 species_match 98.83 SAMEA2238381 6 Streptococcus pneumoniae 93.18 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 113606 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1892 Streptococcus pneumoniae Streptococcus pneumoniae ERS367193 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:22.733 98.76 2011925 93.18 1313 2114 2024-02-06T05:19:23.000 2013924 88890 2011924 CSF Homo sapiens Streptococcus pneumoniae Disease 174 EBI 100 GCA_053203845.1 GCF_900046615.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900046615.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 30.6767 https://www.ncbi.nlm.nih.gov/nuccore/FDXW00000000.1 2014-03-18T09:35:30Z GCF_900046615.1 haploid public 2070508-sc-2013-11-05T11:55:30Z-1749740 85.44 0.31 38 2015-08-10T19:24:10 GCA_053203845.1 798159 48 11860_5#12 2070508-sc-2013-11-05T11:55:30Z-1749740 Netherlands 11860_5#12 SAMEA2238381 1313 GCA_900046615.1 Generic.1.0 85.44 SRA GCA_900046615.1 category_na live 2018-03-09T10:29:24Z 2842STDY5643751 PRJEB4909 Annotation submitted by SC SC SC 29 1749740 2018-03-09T10:29:24Z 2014-03-18T00:00:00.000 2070508 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDXW01 2006/2012 2842STDY5643751 6.10 2014-03-18T09:35:30Z Prokka current 29 2070508-sc-2013-11-05T11:55:30Z-1749740 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDXW01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643751 species_match 98.83 SAMEA2383044 10 Streptococcus pneumoniae 91.4 Streptococcus pneumoniae 1313 PRJEB4909 13 current na 74346 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2063 Streptococcus pneumoniae Streptococcus pneumoniae ERS409369 SC 2006/2012 v1.2.4 2014-07-17T08:09:29.256 98.94 2097732 91.4 1313 2110 2024-02-06T06:52:13.000 2101346 63773 2097732 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900019815.1 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FDQC00000000.1 2014-07-16T11:40:11Z GCA_900019815.1 haploid public 2091204_II-sc-1870294 87.37 0.62 67 2015-08-10T19:44:15 GCA_053203845.1 829779 47 12754_2#24 2091204_II-sc-1870294 Netherlands 12754_2#24 SAMEA2383044 1313 GCF_900019815.1 Generic.1.0 87.37 SRA GCF_900019815.1 category_na live 2018-03-09T10:42:30Z 2842STDY5753589 PRJEB4909 GCF_900019815.1-RS_2025_09_21 SC SC 52 1870294 2018-03-09T10:42:30Z 2014-07-16T00:00:00.000 2091204_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDQC01 2006/2012 2842STDY5753589 2014-07-16T11:40:11Z Prokka current 52 2091204_II-sc-1870294 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDQC01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753589 species_match 98.84 SAMEA2383044 10 Streptococcus pneumoniae 91.4 Streptococcus pneumoniae 1313 PRJEB4909 13 current na Best-placed reference protein set; GeneMarkS-2+ 74346 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1965 Streptococcus pneumoniae Streptococcus pneumoniae ERS409369 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:29.256 98.94 2097732 91.4 1313 2191 2024-02-06T06:52:13.000 2101346 63773 2097732 blood Homo sapiens Streptococcus pneumoniae Disease 174 EBI 100 GCA_053203845.1 GCF_900019815.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900019815.1 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FDQC00000000.1 2014-07-16T11:40:11Z GCF_900019815.1 haploid public 2091204_II-sc-1870294 87.37 0.62 67 2015-08-10T19:44:15 GCA_053203845.1 829779 52 12754_2#24 2091204_II-sc-1870294 Netherlands 12754_2#24 SAMEA2383044 1313 GCA_900019815.1 Generic.1.0 87.37 SRA GCA_900019815.1 category_na live 2018-03-09T10:42:30Z 2842STDY5753589 PRJEB4909 Annotation submitted by SC SC SC 52 1870294 2018-03-09T10:42:30Z 2014-07-16T00:00:00.000 2091204_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDQC01 2006/2012 2842STDY5753589 6.10 2014-07-16T11:40:11Z Prokka current 52 2091204_II-sc-1870294 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDQC01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753589 species_match 98.84 SAMEA2239182 9 Streptococcus pneumoniae 91.39 Streptococcus pneumoniae 1313 PRJEB4909 13 current na 76640 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2052 Streptococcus pneumoniae Streptococcus pneumoniae ERS367994 SC 2006/2012 v1.2.4 2014-05-07T08:35:25.820 98.94 2098411 91.39 1313 2100 2024-02-06T05:04:45.000 2103108 61198 2098409 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900046915.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FDSJ00000000.1 2014-03-18T09:35:30Z GCA_900046915.1 haploid public 2001755-sc-2013-11-05T12:09:20Z-1750553 87.39 0.62 67 2015-08-10T19:24:46 GCA_053203845.1 830161 48 11860_8#50 2001755-sc-2013-11-05T12:09:20Z-1750553 Netherlands 11860_8#50 SAMEA2239182 1313 GCF_900046915.1 Generic.1.0 87.39 SRA GCF_900046915.1 category_na live 2018-03-09T10:27:43Z 2842STDY5644564 PRJEB4909 GCF_900046915.1-RS_2025_12_21 SC SC 49 1750553 2018-03-09T10:27:43Z 2014-03-18T00:00:00.000 2001755 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDSJ01 2006/2012 2842STDY5644564 2014-03-18T09:35:30Z Prokka current 49 2001755-sc-2013-11-05T12:09:20Z-1750553 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDSJ01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644564 species_match 98.85 SAMEA2239182 9 Streptococcus pneumoniae 91.39 Streptococcus pneumoniae 1313 PRJEB4909 13 current na Best-placed reference protein set; GeneMarkS-2+ 76640 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-21 species Homo sapiens 1984 Streptococcus pneumoniae Streptococcus pneumoniae ERS367994 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:25.820 98.94 2098411 91.39 1313 2200 2024-02-06T05:04:45.000 2103108 61198 2098409 CSF Homo sapiens Streptococcus pneumoniae Disease 163 EBI 100 GCA_053203845.1 GCF_900046915.1-RS_2025_12_21 SLX Streptococcus pneumoniae GCF_900046915.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FDSJ00000000.1 2014-03-18T09:35:30Z GCF_900046915.1 haploid public 2001755-sc-2013-11-05T12:09:20Z-1750553 87.39 0.62 67 2015-08-10T19:24:46 GCA_053203845.1 830161 53 11860_8#50 2001755-sc-2013-11-05T12:09:20Z-1750553 Netherlands 11860_8#50 SAMEA2239182 1313 GCA_900046915.1 Generic.1.0 87.39 SRA GCA_900046915.1 category_na live 2018-03-09T10:27:43Z 2842STDY5644564 PRJEB4909 Annotation submitted by SC SC SC 49 1750553 2018-03-09T10:27:43Z 2014-03-18T00:00:00.000 2001755 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDSJ01 2006/2012 2842STDY5644564 6.10 2014-03-18T09:35:30Z Prokka current 49 2001755-sc-2013-11-05T12:09:20Z-1750553 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDSJ01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644564 species_match 98.85 SAMEA1029387 10 Streptococcus pneumoniae 91.07 Streptococcus pneumoniae 1313 PRJEB2480 12 current na 67058 type Streptococcus pneumoniae 2015-07-14 5 5 species Homo sapiens 2073 Streptococcus pneumoniae Streptococcus pneumoniae ERS022473 SC 2010-07-15 v1.2.4 2012-02-09T20:48:19.030 99 2108431 91.07 1313 2114 2024-02-05T21:33:59.000 2108506 59694 2108394 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001144885.1 type nasopharynx 98.78 OK 39.5 Streptococcus pneumoniae 46.8856 https://www.ncbi.nlm.nih.gov/nuccore/CMGT00000000.1 2012-02-07T17:03:02Z GCA_001144885.1 haploid public SMRU2963-sc-2011-01-27-1063176 87.51 1.22 65 2015-07-28T08:13:15 GCA_053203845.1 833748 41 7038_5#11 SMRU2963-sc-2011-01-27-1063176 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029387 1313 GCF_001144885.1 Generic.1.0 87.51 SRA GCF_001144885.1 category_na live 2018-03-09T09:59:31Z SMRU2963 PRJEB2480 GCF_001144885.1-RS_2026_01_31 SC SC 61 2018-03-09T09:59:31Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMGT01 2010-07-15 SMRU2963 2012-02-07T17:03:02Z Prokka current 61 SMRU2963-sc-2011-01-27-1063176 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMGT01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2963 species_match 98.78 SAMEA1029387 10 Streptococcus pneumoniae 91.07 Streptococcus pneumoniae 1313 PRJEB2480 12 current na Best-placed reference protein set; GeneMarkS-2+ 67058 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 5 5 species Homo sapiens 1973 Streptococcus pneumoniae Streptococcus pneumoniae ERS022473 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-07-15 v1.2.4 2012-02-09T20:48:19.030 99 2108431 91.07 1313 2210 2024-02-05T21:33:59.000 2108506 59694 2108394 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 194 EBI 100 GCA_053203845.1 GCF_001144885.1-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_001144885.1 type nasopharynx 98.78 OK 39.5 Streptococcus pneumoniae 46.8856 https://www.ncbi.nlm.nih.gov/nuccore/CMGT00000000.1 2012-02-07T17:03:02Z GCF_001144885.1 haploid public SMRU2963-sc-2011-01-27-1063176 87.51 1.22 65 2015-07-28T08:13:15 GCA_053203845.1 833748 43 7038_5#11 SMRU2963-sc-2011-01-27-1063176 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029387 1313 GCA_001144885.1 Generic.1.0 87.51 SRA GCA_001144885.1 category_na live 2018-03-09T09:59:31Z SMRU2963 PRJEB2480 Annotation submitted by SC SC SC 61 2018-03-09T09:59:31Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMGT01 2010-07-15 SMRU2963 6.10 2012-02-07T17:03:02Z Prokka current 61 SMRU2963-sc-2011-01-27-1063176 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMGT01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2963 species_match 98.78 SAMEA1024961 15 Streptococcus pneumoniae 89.72 Streptococcus pneumoniae 1313 PRJEB2393 15 current na 57554 type Streptococcus pneumoniae 2015-07-18 4 4 species Homo sapiens 2093 Streptococcus pneumoniae Streptococcus pneumoniae ERS020169 SC 2008-08-13 v1.2.4 2012-01-20T19:49:41.840 99.18 2128365 89.72 1313 2129 2024-02-06T09:04:35.000 2128408 57554 2128347 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001166105.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 68.4015 https://www.ncbi.nlm.nih.gov/nuccore/CQZJ00000000.1 2011-11-02T10:11:57Z GCA_001166105.1 haploid public SMRU659-sc-2011-01-27-1060848 90.46 3.75 76 2015-07-28T08:11:03 GCA_001457635.1 843651 36 6730_5#11 SMRU659-sc-2011-01-27-1060848 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024961 1313 GCF_001166105.1 Generic.1.0 90.46 SRA GCF_001166105.1 category_na live 2018-03-09T12:16:55Z SMRU659 PRJEB2393 GCF_001166105.1-RS_2026_01_18 SC SC 74 2018-03-09T12:16:55Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQZJ01 2008-08-13 SMRU659 2011-11-02T10:11:57Z Prokka current 74 SMRU659-sc-2011-01-27-1060848 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQZJ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU659 species_match 98.72 SAMEA1024961 15 Streptococcus pneumoniae 89.72 Streptococcus pneumoniae 1313 PRJEB2393 15 current na Best-placed reference protein set; GeneMarkS-2+ 57554 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 4 4 species Homo sapiens 2032 Streptococcus pneumoniae Streptococcus pneumoniae ERS020169 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-08-13 v1.2.4 2012-01-20T19:49:41.840 99.18 2128365 89.72 1313 2237 2024-02-06T09:04:35.000 2128408 57554 2128347 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 167 EBI 100 GCA_001457635.1 GCF_001166105.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001166105.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 68.4015 https://www.ncbi.nlm.nih.gov/nuccore/CQZJ00000000.1 2011-11-02T10:11:57Z GCF_001166105.1 haploid public SMRU659-sc-2011-01-27-1060848 90.46 3.75 76 2015-07-28T08:11:03 GCA_001457635.1 843651 38 6730_5#11 SMRU659-sc-2011-01-27-1060848 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024961 1313 GCA_001166105.1 Generic.1.0 90.46 SRA GCA_001166105.1 category_na live 2018-03-09T12:16:55Z SMRU659 PRJEB2393 Annotation submitted by SC SC SC 74 2018-03-09T12:16:55Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQZJ01 2008-08-13 SMRU659 6.10 2011-11-02T10:11:57Z Prokka current 74 SMRU659-sc-2011-01-27-1060848 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQZJ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU659 species_match 98.72 SAMEA1023959 23 Streptococcus pneumoniae 89.92 Streptococcus pneumoniae 1313 PRJEB2357 23 current na 28626 type Streptococcus pneumoniae 2015-07-18 4 4 species Homo sapiens 2081 Streptococcus pneumoniae Streptococcus pneumoniae ERS019723 SC 2008-07-14 v1.2.4 2012-01-20T19:47:03.663 99.28 2129910 89.92 1313 2120 2024-02-05T21:32:00.000 2129921 28626 2129902 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001200955.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 78.4969 https://www.ncbi.nlm.nih.gov/nuccore/CQWU00000000.1 2011-11-07T13:55:51Z GCA_001200955.1 haploid public SMRU565-sc-2011-01-27-1060754 90.73 4.06 164 2015-07-28T08:11:18 GCA_001457635.1 844467 39 6714_8#13 SMRU565-sc-2011-01-27-1060754 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1023959 1313 GCF_001200955.1 Generic.1.0 90.73 SRA GCF_001200955.1 category_na live 2018-03-09T09:59:28Z SMRU565 PRJEB2357 GCF_001200955.1-RS_2026_01_31 SC SC 163 2018-03-09T09:59:28Z 2011-11-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQWU01 2008-07-14 SMRU565 2011-11-07T13:55:51Z Prokka current 163 SMRU565-sc-2011-01-27-1060754 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQWU01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU565 species_match 98.72 SAMEA1023959 23 Streptococcus pneumoniae 89.92 Streptococcus pneumoniae 1313 PRJEB2357 23 current na Best-placed reference protein set; GeneMarkS-2+ 28626 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 4 4 species Homo sapiens 2036 Streptococcus pneumoniae Streptococcus pneumoniae ERS019723 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-07-14 v1.2.4 2012-01-20T19:47:03.663 99.28 2129910 89.92 1313 2268 2024-02-05T21:32:00.000 2129921 28626 2129902 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 191 EBI 100 GCA_001457635.1 GCF_001200955.1-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_001200955.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 78.4969 https://www.ncbi.nlm.nih.gov/nuccore/CQWU00000000.1 2011-11-07T13:55:51Z GCF_001200955.1 haploid public SMRU565-sc-2011-01-27-1060754 90.73 4.06 164 2015-07-28T08:11:18 GCA_001457635.1 844467 41 6714_8#13 SMRU565-sc-2011-01-27-1060754 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1023959 1313 GCA_001200955.1 Generic.1.0 90.73 SRA GCA_001200955.1 category_na live 2018-03-09T09:59:28Z SMRU565 PRJEB2357 Annotation submitted by SC SC SC 163 2018-03-09T09:59:28Z 2011-11-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQWU01 2008-07-14 SMRU565 6.10 2011-11-07T13:55:51Z Prokka current 163 SMRU565-sc-2011-01-27-1060754 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQWU01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU565 species_match 98.72 SAMEA3354092 2 Streptococcus pneumoniae 95.75 Streptococcus pneumoniae PRJEB3084 2 suppressed na 474020 type Streptococcus pneumoniae 2019-05-10 8 8 Homo sapiens 1972 Streptococcus pneumoniae Streptococcus pneumoniae ERS708447 SC 2014 2015-10-14T08:11:10.530 1999617 95.75 1313 2025 Streptococcus pneumoniae 2024-02-06T15:57:36.000 1999664 408500 1999617 blood Homo sapiens IPD from large multi-isolate project ST53 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901233345.1 type blood 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANPW000000000.1 2015-10-13T13:59:04Z GCA_901233345.1 haploid public GPS_ZA_2886-sc-2278698 90.7 22 2018-03-10T20:10:24 GCA_001457635.1 793114 53 17175_8#4 GPS_ZA_2886-sc-2278698 South Africa 17175_8#4 SAMEA3354092 1313 GCF_901233345.1 Generic.1.0 90.7 SRA GCF_901233345.1 category_na live 2019-04-18T15:57:00Z GPSC3 PRJEB3084 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SC SC 21 2278698 2019-04-18T15:57:00Z 2015-10-13T00:00:00.000 42345 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANPW01 2014 GPSC3 substr. ST53 2015-10-13T13:59:04Z Prokka current 21 GPS_ZA_2886-sc-2278698 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANPW01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC3 species_match 98.72 SAMEA3354092 2 Streptococcus pneumoniae 95.75 Streptococcus pneumoniae PRJEB3084 2 current na Best-placed reference protein set; GeneMarkS-2+ 474020 type Streptococcus pneumoniae This record was removed by RefSeq staff. Please contact info@ncbi.nlm.nih.gov for further details. Reason: surveillance assembly 2019-05-23 8 8 Homo sapiens 1936 Streptococcus pneumoniae Streptococcus pneumoniae ERS708447 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2014 2015-10-14T08:11:10.530 1999617 95.75 1313 2158 Streptococcus pneumoniae 2024-02-06T15:57:36.000 1999664 408500 blood Homo sapiens IPD from large multi-isolate project 167 ST53 EBI 100 GCA_001457635.1 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SLX Streptococcus pneumoniae GCF_901233345.1 type blood 98.72 ERC000011 OK Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANPW000000000.1 2015-10-13T13:59:04Z GCF_901233345.1 haploid public GPS_ZA_2886-sc-2278698 90.7 22 2018-03-10T20:10:24 GCA_001457635.1 55 17175_8#4 GPS_ZA_2886-sc-2278698 South Africa 17175_8#4 SAMEA3354092 1313 GCA_901233345.1 Generic.1.0 90.7 SRA GCA_901233345.1 category_na live 2019-04-18T15:57:00Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 21 2278698 2019-04-18T15:57:00Z 2015-10-13T00:00:00.000 42345 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANPW01 2014 GPSC3 substr. ST53 4.8 2015-10-13T13:59:04Z Prokka suppressed 21 GPS_ZA_2886-sc-2278698 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANPW01 Scaffold SOURCE_DATABASE_REFSEQ South Africa 2019-05-10 GPSC3 species_match 98.72 SAMEA3354001 3 Streptococcus pneumoniae 95.88 Streptococcus pneumoniae PRJEB3084 3 suppressed na 341813 type Streptococcus pneumoniae 2019-05-10 8 8 Homo sapiens 1969 Streptococcus pneumoniae Streptococcus pneumoniae ERS708356 SC 2014 2015-10-14T08:11:07.956 1999985 95.88 1313 2022 Streptococcus pneumoniae 2024-02-06T15:57:32.000 1999985 341813 1999982 CSF Homo sapiens Meningitis from large multi-isolate project ST53 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901227155.1 type CSF 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAMSJ000000000.1 2015-10-13T13:58:31Z GCA_901227155.1 haploid public GPS_ZA_2844-sc-2278607 90.84 20 2018-03-10T20:10:20 GCA_001457635.1 793313 53 17175_7#51 GPS_ZA_2844-sc-2278607 South Africa 17175_7#51 SAMEA3354001 1313 GCF_901227155.1 Generic.1.0 90.84 SRA GCF_901227155.1 category_na live 2019-04-18T15:56:59Z GPSC3 PRJEB3084 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SC SC 20 2278607 2019-04-18T15:56:59Z 2015-10-13T00:00:00.000 42049_42051 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAMSJ01 2014 GPSC3 substr. ST53 2015-10-13T13:58:31Z Prokka current 20 GPS_ZA_2844-sc-2278607 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAMSJ01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC3 species_match 98.71 SAMEA3354001 3 Streptococcus pneumoniae 95.88 Streptococcus pneumoniae PRJEB3084 3 current na Best-placed reference protein set; GeneMarkS-2+ 341813 type Streptococcus pneumoniae This record was removed by RefSeq staff. Please contact info@ncbi.nlm.nih.gov for further details. Reason: surveillance assembly 2019-05-22 8 8 Homo sapiens 1934 Streptococcus pneumoniae Streptococcus pneumoniae ERS708356 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2014 2015-10-14T08:11:07.956 1999985 95.88 1313 2154 Streptococcus pneumoniae 2024-02-06T15:57:32.000 1999985 341813 CSF Homo sapiens Meningitis from large multi-isolate project 165 ST53 EBI 100 GCA_001457635.1 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SLX Streptococcus pneumoniae GCF_901227155.1 type CSF 98.71 ERC000011 OK Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAMSJ000000000.1 2015-10-13T13:58:31Z GCF_901227155.1 haploid public GPS_ZA_2844-sc-2278607 90.84 20 2018-03-10T20:10:20 GCA_001457635.1 55 17175_7#51 GPS_ZA_2844-sc-2278607 South Africa 17175_7#51 SAMEA3354001 1313 GCA_901227155.1 Generic.1.0 90.84 SRA GCA_901227155.1 category_na live 2019-04-18T15:56:59Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 20 2278607 2019-04-18T15:56:59Z 2015-10-13T00:00:00.000 42049_42051 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAMSJ01 2014 GPSC3 substr. ST53 4.8 2015-10-13T13:58:31Z Prokka suppressed 20 GPS_ZA_2844-sc-2278607 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAMSJ01 Contig SOURCE_DATABASE_REFSEQ South Africa 2019-05-10 GPSC3 species_match 98.71 SAMEA3354175 3 Streptococcus pneumoniae 94.18 Streptococcus pneumoniae PRJEB3084 3 na 329684 type Streptococcus pneumoniae 2019-05-10 8 8 Homo sapiens 1973 Streptococcus pneumoniae Streptococcus pneumoniae ERS708530 SC 2014 2015-10-14T08:11:12.383 1998140 94.18 1313 2026 Streptococcus pneumoniae 2024-02-06T15:57:36.000 1998140 329684 1998138 blood Homo sapiens IPD from large multi-isolate project ST53 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901254675.1 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAQUG000000000.1 2015-10-13T13:59:38Z GCA_901254675.1 haploid public GPS_ZA_3017-sc-2278783 85.76 21 2018-03-10T20:10:28 GCA_053203845.1 792586 53 17150_6#51 GPS_ZA_3017-sc-2278783 South Africa 17150_6#51 SAMEA3354175 1313 Generic.1.0 85.76 SRA category_na live 2019-04-18T15:57:01Z GPSC3 PRJEB3084 SC SC 21 2278783 2019-04-18T15:57:01Z 2015-10-13T00:00:00.000 43645 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAQUG01 2014 GPSC3 substr. ST53 2015-10-13T13:59:38Z Prokka current 21 GPS_ZA_3017-sc-2278783 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAQUG01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC3 species_match 98.84 SAMEA3354093 3 Streptococcus pneumoniae 94.07 Streptococcus pneumoniae PRJEB3084 3 na 329163 type Streptococcus pneumoniae 2019-05-10 8 8 Homo sapiens 1980 Streptococcus pneumoniae Streptococcus pneumoniae ERS708448 SC 2014 2015-10-14T08:11:10.553 2000507 94.07 1313 2032 Streptococcus pneumoniae 2024-02-06T15:57:36.000 2000559 329163 2000506 blood Homo sapiens IPD from large multi-isolate project ST53 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901247855.1 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAPTY000000000.1 2015-10-13T13:59:14Z GCA_901247855.1 haploid public GPS_ZA_2980-sc-2278699 85.76 20 2018-03-10T20:10:24 GCA_053203845.1 793386 52 17150_6#6 GPS_ZA_2980-sc-2278699 South Africa 17150_6#6 SAMEA3354093 1313 Generic.1.0 85.76 SRA category_na live 2019-04-18T15:57:00Z GPSC3 PRJEB3084 SC SC 19 2278699 2019-04-18T15:57:00Z 2015-10-13T00:00:00.000 43143 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAPTY01 2014 GPSC3 substr. ST53 2015-10-13T13:59:14Z Prokka current 19 GPS_ZA_2980-sc-2278699 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAPTY01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC3 species_match 98.85 SAMEA2674672 3 Streptococcus pneumoniae 94.32 Streptococcus pneumoniae 1313 PRJEB4909 3 current na 251938 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2024 Streptococcus pneumoniae Streptococcus pneumoniae ERS515187 SC 2006/2012 v1.2.4 2015-01-29T08:41:17.140 98.32 2033150 94.32 1313 2069 2024-02-06T09:00:23.000 2034585 196273 2033150 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900031985.1 type blood 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 14.0452 https://www.ncbi.nlm.nih.gov/nuccore/FEOY00000000.1 2015-01-08T09:41:20Z GCA_900031985.1 haploid public 990506_II-sc-2020025 87.39 0.64 28 2015-08-11T21:53:58 GCA_053203845.1 806332 45 14412_3#48 990506_II-sc-2020025 Netherlands 14412_3#48 SAMEA2674672 1313 GCF_900031985.1 Generic.1.0 87.39 SRA GCF_900031985.1 category_na live 2018-03-09T11:18:44Z 2842STDY5881931 PRJEB4909 GCF_900031985.1-RS_2025_09_21 SC SC 23 2020025 2018-03-09T11:18:44Z 2015-01-08T00:00:00.000 990506_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEOY01 2006/2012 2842STDY5881931 2015-01-08T09:41:20Z Prokka current 23 990506_II-sc-2020025 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEOY01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5881931 species_match 98.71 SAMEA2674672 3 Streptococcus pneumoniae 94.32 Streptococcus pneumoniae 1313 PRJEB4909 3 current na Best-placed reference protein set; GeneMarkS-2+ 251938 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1936 Streptococcus pneumoniae Streptococcus pneumoniae ERS515187 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2015-01-29T08:41:17.140 98.32 2033150 94.32 1313 2142 2024-02-06T09:00:23.000 2034585 196273 2033150 blood Homo sapiens Streptococcus pneumoniae Disease 155 EBI 100 GCA_053203845.1 GCF_900031985.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900031985.1 type blood 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 14.0452 https://www.ncbi.nlm.nih.gov/nuccore/FEOY00000000.1 2015-01-08T09:41:20Z GCF_900031985.1 haploid public 990506_II-sc-2020025 87.39 0.64 28 2015-08-11T21:53:58 GCA_053203845.1 806332 51 14412_3#48 990506_II-sc-2020025 Netherlands 14412_3#48 SAMEA2674672 1313 GCA_900031985.1 Generic.1.0 87.39 SRA GCA_900031985.1 category_na live 2018-03-09T11:18:44Z 2842STDY5881931 PRJEB4909 Annotation submitted by SC SC SC 23 2020025 2018-03-09T11:18:44Z 2015-01-08T00:00:00.000 990506_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEOY01 2006/2012 2842STDY5881931 6.10 2015-01-08T09:41:20Z Prokka current 23 990506_II-sc-2020025 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEOY01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5881931 species_match 98.71 SAMEA2383213 4 Streptococcus pneumoniae 94.3 Streptococcus pneumoniae 1313 PRJEB4909 4 current na 168463 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2034 Streptococcus pneumoniae Streptococcus pneumoniae ERS409538 SC 2006/2012 v1.2.4 2014-07-17T08:09:39.740 98.32 2031646 94.3 1313 2079 2024-02-06T06:55:31.000 2032981 160291 2031646 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900033595.1 type blood 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae 14.0452 https://www.ncbi.nlm.nih.gov/nuccore/FEMB00000000.1 2014-07-16T11:40:11Z GCA_900033595.1 haploid public 2111297_II-sc-1870465 87.3 0.64 29 2015-08-10T19:44:22 GCA_053203845.1 805769 45 12754_4#3 2111297_II-sc-1870465 Netherlands 12754_4#3 SAMEA2383213 1313 GCF_900033595.1 Generic.1.0 87.3 SRA GCF_900033595.1 category_na live 2018-03-09T10:42:59Z 2842STDY5753760 PRJEB4909 GCF_900033595.1-RS_2025_09_21 SC SC 22 1870465 2018-03-09T10:42:59Z 2014-07-16T00:00:00.000 2111297_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEMB01 2006/2012 2842STDY5753760 2014-07-16T11:40:11Z Prokka current 22 2111297_II-sc-1870465 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEMB01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753760 species_match 98.72 SAMEA2383213 4 Streptococcus pneumoniae 94.3 Streptococcus pneumoniae 1313 PRJEB4909 4 current na Best-placed reference protein set; GeneMarkS-2+ 168463 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1924 Streptococcus pneumoniae Streptococcus pneumoniae ERS409538 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:39.740 98.32 2031646 94.3 1313 2131 2024-02-06T06:55:31.000 2032981 160291 2031646 blood Homo sapiens Streptococcus pneumoniae Disease 156 EBI 100 GCA_053203845.1 GCF_900033595.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900033595.1 type blood 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae 14.0452 https://www.ncbi.nlm.nih.gov/nuccore/FEMB00000000.1 2014-07-16T11:40:11Z GCF_900033595.1 haploid public 2111297_II-sc-1870465 87.3 0.64 29 2015-08-10T19:44:22 GCA_053203845.1 805769 51 12754_4#3 2111297_II-sc-1870465 Netherlands 12754_4#3 SAMEA2383213 1313 GCA_900033595.1 Generic.1.0 87.3 SRA GCA_900033595.1 category_na live 2018-03-09T10:42:59Z 2842STDY5753760 PRJEB4909 Annotation submitted by SC SC SC 22 1870465 2018-03-09T10:42:59Z 2014-07-16T00:00:00.000 2111297_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEMB01 2006/2012 2842STDY5753760 6.10 2014-07-16T11:40:11Z Prokka current 22 2111297_II-sc-1870465 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEMB01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753760 species_match 98.72 SAMEA2238878 4 Streptococcus pneumoniae 93.13 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 152299 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2004 Streptococcus pneumoniae Streptococcus pneumoniae ERS367690 SC 2006/2012 v1.2.4 2014-05-07T08:35:03.390 99.07 2018122 93.13 1313 2050 2024-02-06T05:07:20.000 2020958 116248 2018122 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900030015.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 53.4217 https://www.ncbi.nlm.nih.gov/nuccore/FCVK00000000.1 2014-03-18T09:35:30Z GCA_900030015.1 haploid public 2110469-sc-2013-11-05T12:04:14Z-1750242 85.65 0.31 39 2015-08-10T19:24:30 GCA_053203845.1 800650 46 11861_3#24 2110469-sc-2013-11-05T12:04:14Z-1750242 Netherlands 11861_3#24 SAMEA2238878 1313 GCF_900030015.1 Generic.1.0 85.65 SRA GCF_900030015.1 category_na live 2018-03-09T10:28:02Z 2842STDY5644253 PRJEB4909 GCF_900030015.1-RS_2025_09_21 SC SC 28 1750242 2018-03-09T10:28:02Z 2014-03-18T00:00:00.000 2110469 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCVK01 2006/2012 2842STDY5644253 2014-03-18T09:35:30Z Prokka current 28 2110469-sc-2013-11-05T12:04:14Z-1750242 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCVK01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644253 species_match 98.83 SAMEA2238878 4 Streptococcus pneumoniae 93.13 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 152299 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1890 Streptococcus pneumoniae Streptococcus pneumoniae ERS367690 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:03.390 99.07 2018122 93.13 1313 2113 2024-02-06T05:07:20.000 2020958 116248 2018122 CSF Homo sapiens Streptococcus pneumoniae Disease 171 EBI 100 GCA_053203845.1 GCF_900030015.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900030015.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 53.4217 https://www.ncbi.nlm.nih.gov/nuccore/FCVK00000000.1 2014-03-18T09:35:30Z GCF_900030015.1 haploid public 2110469-sc-2013-11-05T12:04:14Z-1750242 85.65 0.31 39 2015-08-10T19:24:30 GCA_053203845.1 800650 52 11861_3#24 2110469-sc-2013-11-05T12:04:14Z-1750242 Netherlands 11861_3#24 SAMEA2238878 1313 GCA_900030015.1 Generic.1.0 85.65 SRA GCA_900030015.1 category_na live 2018-03-09T10:28:02Z 2842STDY5644253 PRJEB4909 Annotation submitted by SC SC SC 28 1750242 2018-03-09T10:28:02Z 2014-03-18T00:00:00.000 2110469 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCVK01 2006/2012 2842STDY5644253 6.10 2014-03-18T09:35:30Z Prokka current 28 2110469-sc-2013-11-05T12:04:14Z-1750242 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCVK01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644253 species_match 98.83 SAMEA2521622 5 Streptococcus pneumoniae 94.41 Streptococcus pneumoniae 1313 PRJEB3084 6 current na 145628 type Streptococcus pneumoniae 2019-05-11 8 8 species Homo sapiens 1953 Streptococcus pneumoniae Streptococcus pneumoniae ERS455162 SC 2012 v1.2.4 2014-09-17T09:08:14.990 99.04 1986546 94.41 1313 1999 Streptococcus pneumoniae 2024-02-06T15:55:08.000 1988260 102053 1986545 CSF Homo sapiens Streptococcus pneumoniae Meningitis ST1480 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900053565.2 type CSF 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 49.4655 https://www.ncbi.nlm.nih.gov/nuccore/FHSG00000000.2 2014-09-16T09:22:31Z GCA_900053565.2 haploid public 2012218663-sc-1946914 88.85 0.64 32 2015-08-10T19:57:10 GCA_001457635.1 788837 46 13414_2#71 2012218663-sc-1946914 USA 13414_2#71 SAMEA2521622 1313 GCF_900053565.2 Generic.1.0 88.85 SRA GCF_900053565.2 category_na live 2019-04-18T15:39:23Z GPSC98 PRJEB3084 GCF_900053565.2-RS_2026_01_03 SC SC 26 1946914 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012218663 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSG02 2012 2245STDY5819588 2014-09-16T09:22:31Z Prokka current 26 2012218663-sc-1946914 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSG02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC98 species_match 98.76 SAMEA2521622 5 Streptococcus pneumoniae 94.41 Streptococcus pneumoniae 1313 PRJEB3084 6 current na Best-placed reference protein set; GeneMarkS-2+ 145628 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-03 8 8 species Homo sapiens 1870 Streptococcus pneumoniae Streptococcus pneumoniae ERS455162 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:14.990 99.04 1986546 94.41 1313 2079 Streptococcus pneumoniae 2024-02-06T15:55:08.000 1988260 102053 1986545 CSF Homo sapiens Streptococcus pneumoniae Meningitis 157 ST1480 EBI 100 GCA_001457635.1 GCF_900053565.2-RS_2026_01_03 SLX Streptococcus pneumoniae GCF_900053565.2 type CSF 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 49.4655 https://www.ncbi.nlm.nih.gov/nuccore/FHSG00000000.2 2014-09-16T09:22:31Z GCF_900053565.2 haploid public 2012218663-sc-1946914 88.85 0.64 32 2015-08-10T19:57:10 GCA_001457635.1 788837 52 13414_2#71 2012218663-sc-1946914 USA 13414_2#71 SAMEA2521622 1313 GCA_900053565.2 Generic.1.0 88.85 SRA GCA_900053565.2 category_na live 2019-04-18T15:39:23Z GPSC98 PRJEB3084 Annotation submitted by SC SC SC 26 1946914 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012218663 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSG02 2012 GPSC98 substr. ST1480 6.10 2014-09-16T09:22:31Z Prokka current 26 2012218663-sc-1946914 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSG02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC98 species_match 98.76 SAMEA2383083 4 Streptococcus pneumoniae 94.57 Streptococcus pneumoniae 1313 PRJEB4909 5 current na 147403 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1957 Streptococcus pneumoniae Streptococcus pneumoniae ERS409408 SC 2006/2012 v1.2.4 2014-07-17T08:09:31.516 99.05 1997830 94.57 1313 2001 2024-02-06T06:52:43.000 2000217 96739 1997830 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900039375.1 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 51.1363 https://www.ncbi.nlm.nih.gov/nuccore/FEHB00000000.1 2014-07-16T11:40:12Z GCA_900039375.1 haploid public 2094236_II-sc-1870333 86.1 0.31 29 2015-08-10T19:44:17 GCA_053203845.1 791430 44 12754_2#63 2094236_II-sc-1870333 Netherlands 12754_2#63 SAMEA2383083 1313 GCF_900039375.1 Generic.1.0 86.1 SRA GCF_900039375.1 category_na live 2018-03-09T10:42:36Z 2842STDY5753628 PRJEB4909 GCF_900039375.1-RS_2026_01_25 SC SC 21 1870333 2018-03-09T10:42:36Z 2014-07-16T00:00:00.000 2094236_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEHB01 2006/2012 2842STDY5753628 2014-07-16T11:40:12Z Prokka current 21 2094236_II-sc-1870333 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEHB01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753628 species_match 98.85 SAMEA2383083 4 Streptococcus pneumoniae 94.57 Streptococcus pneumoniae 1313 PRJEB4909 5 current na Best-placed reference protein set; GeneMarkS-2+ 147403 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1850 Streptococcus pneumoniae Streptococcus pneumoniae ERS409408 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:31.516 99.05 1997830 94.57 1313 2063 2024-02-06T06:52:43.000 2000217 96739 1997830 blood Homo sapiens Streptococcus pneumoniae Disease 162 EBI 100 GCA_053203845.1 GCF_900039375.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900039375.1 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 51.1363 https://www.ncbi.nlm.nih.gov/nuccore/FEHB00000000.1 2014-07-16T11:40:12Z GCF_900039375.1 haploid public 2094236_II-sc-1870333 86.1 0.31 29 2015-08-10T19:44:17 GCA_053203845.1 791430 51 12754_2#63 2094236_II-sc-1870333 Netherlands 12754_2#63 SAMEA2383083 1313 GCA_900039375.1 Generic.1.0 86.1 SRA GCA_900039375.1 category_na live 2018-03-09T10:42:36Z 2842STDY5753628 PRJEB4909 Annotation submitted by SC SC SC 21 1870333 2018-03-09T10:42:36Z 2014-07-16T00:00:00.000 2094236_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEHB01 2006/2012 2842STDY5753628 6.10 2014-07-16T11:40:12Z Prokka current 21 2094236_II-sc-1870333 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEHB01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753628 species_match 98.85 SAMEA2239120 6 Streptococcus pneumoniae 93.4 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 103303 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1999 Streptococcus pneumoniae Streptococcus pneumoniae ERS367932 SC 2006/2012 v1.2.4 2014-05-07T08:35:21.950 99.07 2012119 93.4 1313 2045 2024-02-06T05:03:07.000 2014603 95590 2012119 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900021245.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 53.4217 https://www.ncbi.nlm.nih.gov/nuccore/FDRD00000000.1 2014-03-18T09:35:29Z GCA_900021245.1 haploid public 2000267-sc-2013-11-05T12:08:15Z-1750490 85.64 0.31 43 2015-08-10T19:24:43 GCA_053203845.1 798658 46 11860_7#81 2000267-sc-2013-11-05T12:08:15Z-1750490 Netherlands 11860_7#81 SAMEA2239120 1313 GCF_900021245.1 Generic.1.0 85.64 SRA GCF_900021245.1 category_na live 2018-03-09T10:27:29Z 2842STDY5644501 PRJEB4909 GCF_900021245.1-RS_2025_09_28 SC SC 34 1750490 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2000267 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRD01 2006/2012 2842STDY5644501 2014-03-18T09:35:29Z Prokka current 34 2000267-sc-2013-11-05T12:08:15Z-1750490 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRD01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644501 species_match 98.84 SAMEA2239120 6 Streptococcus pneumoniae 93.4 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 103303 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1884 Streptococcus pneumoniae Streptococcus pneumoniae ERS367932 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:21.950 99.07 2012119 93.4 1313 2101 2024-02-06T05:03:07.000 2014603 95590 2012119 CSF Homo sapiens Streptococcus pneumoniae Disease 165 EBI 100 GCA_053203845.1 GCF_900021245.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900021245.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 53.4217 https://www.ncbi.nlm.nih.gov/nuccore/FDRD00000000.1 2014-03-18T09:35:29Z GCF_900021245.1 haploid public 2000267-sc-2013-11-05T12:08:15Z-1750490 85.64 0.31 43 2015-08-10T19:24:43 GCA_053203845.1 798658 52 11860_7#81 2000267-sc-2013-11-05T12:08:15Z-1750490 Netherlands 11860_7#81 SAMEA2239120 1313 GCA_900021245.1 Generic.1.0 85.64 SRA GCA_900021245.1 category_na live 2018-03-09T10:27:29Z 2842STDY5644501 PRJEB4909 Annotation submitted by SC SC SC 34 1750490 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2000267 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRD01 2006/2012 2842STDY5644501 6.10 2014-03-18T09:35:29Z Prokka current 34 2000267-sc-2013-11-05T12:08:15Z-1750490 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRD01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644501 species_match 98.84 SAMEA2238590 5 Streptococcus pneumoniae 94.39 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 118774 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1945 Streptococcus pneumoniae Streptococcus pneumoniae ERS367402 SC 2006/2012 v1.2.4 2014-05-07T08:34:42.210 98.76 1978396 94.39 1313 1990 2024-02-06T05:13:10.000 1979865 94215 1978396 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900029955.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 30.6767 https://www.ncbi.nlm.nih.gov/nuccore/FECO00000000.1 2014-03-18T09:35:29Z GCA_900029955.1 haploid public 2082326-sc-2013-11-05T11:59:04Z-1749951 85.1 0.31 36 2015-08-10T19:24:19 GCA_053203845.1 785143 45 11861_1#27 2082326-sc-2013-11-05T11:59:04Z-1749951 Netherlands 11861_1#27 SAMEA2238590 1313 GCF_900029955.1 Generic.1.0 85.1 SRA GCF_900029955.1 category_na live 2018-03-09T10:28:41Z 2842STDY5643962 PRJEB4909 GCF_900029955.1-RS_2026_01_25 SC SC 30 1749951 2018-03-09T10:28:41Z 2014-03-18T00:00:00.000 2082326 https://www.ncbi.nlm.nih.gov/Traces/wgs/FECO01 2006/2012 2842STDY5643962 2014-03-18T09:35:29Z Prokka current 30 2082326-sc-2013-11-05T11:59:04Z-1749951 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FECO01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643962 species_match 98.85 SAMEA2238590 5 Streptococcus pneumoniae 94.39 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 118774 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1838 Streptococcus pneumoniae Streptococcus pneumoniae ERS367402 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:42.210 98.76 1978396 94.39 1313 2058 2024-02-06T05:13:10.000 1979865 94215 1978396 CSF Homo sapiens Streptococcus pneumoniae Disease 169 EBI 100 GCA_053203845.1 GCF_900029955.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900029955.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 30.6767 https://www.ncbi.nlm.nih.gov/nuccore/FECO00000000.1 2014-03-18T09:35:29Z GCF_900029955.1 haploid public 2082326-sc-2013-11-05T11:59:04Z-1749951 85.1 0.31 36 2015-08-10T19:24:19 GCA_053203845.1 785143 51 11861_1#27 2082326-sc-2013-11-05T11:59:04Z-1749951 Netherlands 11861_1#27 SAMEA2238590 1313 GCA_900029955.1 Generic.1.0 85.1 SRA GCA_900029955.1 category_na live 2018-03-09T10:28:41Z 2842STDY5643962 PRJEB4909 Annotation submitted by SC SC SC 30 1749951 2018-03-09T10:28:41Z 2014-03-18T00:00:00.000 2082326 https://www.ncbi.nlm.nih.gov/Traces/wgs/FECO01 2006/2012 2842STDY5643962 6.10 2014-03-18T09:35:29Z Prokka current 30 2082326-sc-2013-11-05T11:59:04Z-1749951 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FECO01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643962 species_match 98.85 SAMEA1026078 7 Streptococcus pneumoniae 90.79 Streptococcus pneumoniae 1313 PRJEB2397 8 current na 92371 type Streptococcus pneumoniae 2015-07-13 13 13 species Homo sapiens 2106 Streptococcus pneumoniae Streptococcus pneumoniae ERS021769 SC 2009-12-28 v1.2.4 2012-01-20T20:07:50.020 99.47 2113421 90.79 1313 2144 2024-02-06T09:02:35.000 2113565 91265 2113402 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001169525.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/CLUY00000000.1 2012-01-10T09:59:58Z GCA_001169525.1 haploid public SMRU2260-sc-2011-01-27-1062473 90.89 0.58 43 2015-07-28T08:12:42 GCA_001457635.1 837701 38 6983_3#52 SMRU2260-sc-2011-01-27-1062473 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026078 1313 GCF_001169525.1 Generic.1.0 90.89 SRA GCF_001169525.1 category_na live 2018-03-09T11:45:54Z SMRU2260 PRJEB2397 GCF_001169525.1-RS_2026_01_30 SC SC 40 2018-03-09T11:45:54Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLUY01 2009-12-28 SMRU2260 2012-01-10T09:59:58Z Prokka current 40 SMRU2260-sc-2011-01-27-1062473 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLUY01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2260 species_match 98.7 SAMEA1026078 7 Streptococcus pneumoniae 90.79 Streptococcus pneumoniae 1313 PRJEB2397 8 current na Best-placed reference protein set; GeneMarkS-2+ 92371 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-30 13 13 species Homo sapiens 2024 Streptococcus pneumoniae Streptococcus pneumoniae ERS021769 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-12-28 v1.2.4 2012-01-20T20:07:50.020 99.47 2113421 90.79 1313 2244 2024-02-06T09:02:35.000 2113565 91265 2113402 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 179 EBI 100 GCA_001457635.1 GCF_001169525.1-RS_2026_01_30 SLX Streptococcus pneumoniae GCF_001169525.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/CLUY00000000.1 2012-01-10T09:59:58Z GCF_001169525.1 haploid public SMRU2260-sc-2011-01-27-1062473 90.89 0.58 43 2015-07-28T08:12:42 GCA_001457635.1 837701 41 6983_3#52 SMRU2260-sc-2011-01-27-1062473 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026078 1313 GCA_001169525.1 Generic.1.0 90.89 SRA GCA_001169525.1 category_na live 2018-03-09T11:45:54Z SMRU2260 PRJEB2397 Annotation submitted by SC SC SC 40 2018-03-09T11:45:54Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLUY01 2009-12-28 SMRU2260 6.10 2012-01-10T09:59:58Z Prokka current 40 SMRU2260-sc-2011-01-27-1062473 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLUY01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2260 species_match 98.7 SAMEA2238343 5 Streptococcus pneumoniae 94.46 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 128447 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1945 Streptococcus pneumoniae Streptococcus pneumoniae ERS367155 SC 2006/2012 v1.2.4 2014-05-07T08:34:18.473 98.76 1978785 94.46 1313 1990 2024-02-06T05:12:57.000 1980213 88397 1978784 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900020565.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 30.6767 https://www.ncbi.nlm.nih.gov/nuccore/FDWV00000000.1 2014-04-22T10:14:25Z GCA_900020565.1 haploid public 2070030-sc-2013-11-05T11:54:54Z-1749701 85.18 0.31 30 2015-08-10T19:24:08 GCA_053203845.1 785269 45 12045_8#79 2070030-sc-2013-11-05T11:54:54Z-1749701 Netherlands 12045_8#79 SAMEA2238343 1313 GCF_900020565.1 Generic.1.0 85.18 SRA GCF_900020565.1 category_na live 2018-03-09T10:28:47Z 2842STDY5643712 PRJEB4909 GCF_900020565.1-RS_2025_09_21 SC SC 23 1749701 2018-03-09T10:28:47Z 2014-04-22T00:00:00.000 2070030 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDWV01 2006/2012 2842STDY5643712 2014-04-22T10:14:25Z Prokka current 23 2070030-sc-2013-11-05T11:54:54Z-1749701 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDWV01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643712 species_match 98.84 SAMEA2238343 5 Streptococcus pneumoniae 94.46 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 128447 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1834 Streptococcus pneumoniae Streptococcus pneumoniae ERS367155 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:18.473 98.76 1978785 94.46 1313 2050 2024-02-06T05:12:57.000 1980213 88397 1978784 CSF Homo sapiens Streptococcus pneumoniae Disease 165 EBI 100 GCA_053203845.1 GCF_900020565.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900020565.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 30.6767 https://www.ncbi.nlm.nih.gov/nuccore/FDWV00000000.1 2014-04-22T10:14:25Z GCF_900020565.1 haploid public 2070030-sc-2013-11-05T11:54:54Z-1749701 85.18 0.31 30 2015-08-10T19:24:08 GCA_053203845.1 785269 51 12045_8#79 2070030-sc-2013-11-05T11:54:54Z-1749701 Netherlands 12045_8#79 SAMEA2238343 1313 GCA_900020565.1 Generic.1.0 85.18 SRA GCA_900020565.1 category_na live 2018-03-09T10:28:47Z 2842STDY5643712 PRJEB4909 Annotation submitted by SC SC SC 23 1749701 2018-03-09T10:28:47Z 2014-04-22T00:00:00.000 2070030 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDWV01 2006/2012 2842STDY5643712 6.10 2014-04-22T10:14:25Z Prokka current 23 2070030-sc-2013-11-05T11:54:54Z-1749701 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDWV01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643712 species_match 98.84 SAMEA2238312 5 Streptococcus pneumoniae 93.24 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 126100 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1996 Streptococcus pneumoniae Streptococcus pneumoniae ERS367124 SC 2006/2012 v1.2.4 2014-05-07T08:34:14.880 98.14 2008758 93.24 1313 2041 2024-02-06T05:18:18.000 2011048 86321 2008758 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900029425.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 8.72543 https://www.ncbi.nlm.nih.gov/nuccore/FCPO00000000.1 2014-03-18T09:35:29Z GCA_900029425.1 haploid public 2061310-sc-2013-11-05T11:54:24Z-1749670 85.36 0.31 30 2015-08-10T19:24:07 GCA_053203845.1 797467 45 11860_4#38 2061310-sc-2013-11-05T11:54:24Z-1749670 Netherlands 11860_4#38 SAMEA2238312 1313 GCF_900029425.1 Generic.1.0 85.36 SRA GCF_900029425.1 category_na live 2018-03-09T10:29:16Z 2842STDY5643681 PRJEB4909 GCF_900029425.1-RS_2025_09_21 SC SC 21 1749670 2018-03-09T10:29:16Z 2014-03-18T00:00:00.000 2061310 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCPO01 2006/2012 2842STDY5643681 2014-03-18T09:35:29Z Prokka current 21 2061310-sc-2013-11-05T11:54:24Z-1749670 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCPO01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5643681 species_match 98.83 SAMEA2238312 5 Streptococcus pneumoniae 93.24 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 126100 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1881 Streptococcus pneumoniae Streptococcus pneumoniae ERS367124 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:14.880 98.14 2008758 93.24 1313 2097 2024-02-06T05:18:18.000 2011048 86321 2008758 CSF Homo sapiens Streptococcus pneumoniae Disease 165 EBI 100 GCA_053203845.1 GCF_900029425.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900029425.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 8.72543 https://www.ncbi.nlm.nih.gov/nuccore/FCPO00000000.1 2014-03-18T09:35:29Z GCF_900029425.1 haploid public 2061310-sc-2013-11-05T11:54:24Z-1749670 85.36 0.31 30 2015-08-10T19:24:07 GCA_053203845.1 797467 51 11860_4#38 2061310-sc-2013-11-05T11:54:24Z-1749670 Netherlands 11860_4#38 SAMEA2238312 1313 GCA_900029425.1 Generic.1.0 85.36 SRA GCA_900029425.1 category_na live 2018-03-09T10:29:16Z 2842STDY5643681 PRJEB4909 Annotation submitted by SC SC SC 21 1749670 2018-03-09T10:29:16Z 2014-03-18T00:00:00.000 2061310 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCPO01 2006/2012 2842STDY5643681 6.10 2014-03-18T09:35:29Z Prokka current 21 2061310-sc-2013-11-05T11:54:24Z-1749670 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCPO01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5643681 species_match 98.83 SAMEA1025279 9 Streptococcus pneumoniae 89.61 Streptococcus pneumoniae 1313 PRJEB2395 9 current na 93525 type Streptococcus pneumoniae 2015-07-18 14 14 species Homo sapiens 2106 Streptococcus pneumoniae Streptococcus pneumoniae ERS020996 SC 2009-05-01 v1.2.4 2012-01-20T19:58:51.410 98.53 2117333 89.61 1313 2148 2024-02-06T09:03:59.000 2117333 93525 2117301 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001152545.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 19.1729 https://www.ncbi.nlm.nih.gov/nuccore/CRIW00000000.1 2011-11-15T09:28:18Z GCA_001152545.1 haploid public SMRU1486-sc-2011-01-27-1061699 86.47 0.33 54 2015-07-28T08:11:42 GCA_053203845.1 838332 42 6753_1#22 SMRU1486-sc-2011-01-27-1061699 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025279 1313 GCF_001152545.1 Generic.1.0 86.47 SRA GCF_001152545.1 category_na live 2018-03-09T12:05:28Z SMRU1486 PRJEB2395 GCF_001152545.1-RS_2026_01_27 SC SC 54 2018-03-09T12:05:28Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRIW01 2009-05-01 SMRU1486 2011-11-15T09:28:18Z Prokka current 54 SMRU1486-sc-2011-01-27-1061699 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRIW01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1486 species_match 98.73 SAMEA1025279 9 Streptococcus pneumoniae 89.61 Streptococcus pneumoniae 1313 PRJEB2395 9 current na Best-placed reference protein set; GeneMarkS-2+ 93525 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-27 14 14 species Homo sapiens 1983 Streptococcus pneumoniae Streptococcus pneumoniae ERS020996 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-05-01 v1.2.4 2012-01-20T19:58:51.410 98.53 2117333 89.61 1313 2215 2024-02-06T09:03:59.000 2117333 93525 2117301 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 187 EBI 100 GCA_053203845.1 GCF_001152545.1-RS_2026_01_27 SLX Streptococcus pneumoniae GCF_001152545.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 19.1729 https://www.ncbi.nlm.nih.gov/nuccore/CRIW00000000.1 2011-11-15T09:28:18Z GCF_001152545.1 haploid public SMRU1486-sc-2011-01-27-1061699 86.47 0.33 54 2015-07-28T08:11:42 GCA_053203845.1 838332 45 6753_1#22 SMRU1486-sc-2011-01-27-1061699 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025279 1313 GCA_001152545.1 Generic.1.0 86.47 SRA GCA_001152545.1 category_na live 2018-03-09T12:05:28Z SMRU1486 PRJEB2395 Annotation submitted by SC SC SC 54 2018-03-09T12:05:28Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRIW01 2009-05-01 SMRU1486 6.10 2011-11-15T09:28:18Z Prokka current 54 SMRU1486-sc-2011-01-27-1061699 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRIW01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1486 species_match 98.73 SAMEA1024717 8 Streptococcus pneumoniae 90.06 Streptococcus pneumoniae 1313 PRJEB2393 8 current na 88896 type Streptococcus pneumoniae 2015-07-11 13 13 species Homo sapiens 2066 Streptococcus pneumoniae Streptococcus pneumoniae ERS020427 SC 2008-11-04 v1.2.4 2012-01-20T19:52:33.810 99.31 2087703 90.06 1313 2106 2024-02-06T09:04:37.000 2087703 88896 2087690 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001096885.1 type nasopharynx 98.82 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKPN00000000.1 2011-10-25T09:28:11Z GCA_001096885.1 haploid public SMRU917-sc-2011-01-27-1061130 89.07 0.52 43 2015-07-28T08:10:56 GCA_001457635.1 827835 40 6680_5#5 SMRU917-sc-2011-01-27-1061130 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024717 1313 GCF_001096885.1 Generic.1.0 89.07 SRA GCF_001096885.1 category_na live 2018-03-09T12:17:33Z SMRU917 PRJEB2393 GCF_001096885.1-RS_2026_01_20 SC SC 43 2018-03-09T12:17:33Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKPN01 2008-11-04 SMRU917 2011-10-25T09:28:11Z Prokka current 43 SMRU917-sc-2011-01-27-1061130 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKPN01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU917 species_match 98.82 SAMEA1024717 8 Streptococcus pneumoniae 90.06 Streptococcus pneumoniae 1313 PRJEB2393 8 current na Best-placed reference protein set; GeneMarkS-2+ 88896 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-20 13 13 species Homo sapiens 1984 Streptococcus pneumoniae Streptococcus pneumoniae ERS020427 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-11-04 v1.2.4 2012-01-20T19:52:33.810 99.31 2087703 90.06 1313 2193 2024-02-06T09:04:37.000 2087703 88896 2087690 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 167 EBI 100 GCA_001457635.1 GCF_001096885.1-RS_2026_01_20 SLX Streptococcus pneumoniae GCF_001096885.1 type nasopharynx 98.82 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKPN00000000.1 2011-10-25T09:28:11Z GCF_001096885.1 haploid public SMRU917-sc-2011-01-27-1061130 89.07 0.52 43 2015-07-28T08:10:56 GCA_001457635.1 827835 42 6680_5#5 SMRU917-sc-2011-01-27-1061130 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024717 1313 GCA_001096885.1 Generic.1.0 89.07 SRA GCA_001096885.1 category_na live 2018-03-09T12:17:33Z SMRU917 PRJEB2393 Annotation submitted by SC SC SC 43 2018-03-09T12:17:33Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKPN01 2008-11-04 SMRU917 6.10 2011-10-25T09:28:11Z Prokka current 43 SMRU917-sc-2011-01-27-1061130 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKPN01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU917 species_match 98.82 SAMEA1025386 8 Streptococcus pneumoniae 90.62 Streptococcus pneumoniae 1313 PRJEB2395 8 current na 80627 type Streptococcus pneumoniae 2015-07-17 13 13 species Homo sapiens 2053 Streptococcus pneumoniae Streptococcus pneumoniae ERS021229 SC 2009-07-10 v1.2.4 2012-01-20T20:01:25.286 99.31 2071027 90.62 1313 2095 2024-02-05T16:22:07.000 2071027 80627 2071016 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001117545.1 type nasopharynx 98.83 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRUQ00000000.1 2011-11-29T12:03:47Z GCA_001117545.1 haploid public SMRU1719-sc-2011-01-27-1061932 88.91 1.3 45 2015-07-28T08:11:57 GCA_001457635.1 821338 42 6805_6#15 SMRU1719-sc-2011-01-27-1061932 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025386 1313 GCF_001117545.1 Generic.1.0 88.91 SRA GCF_001117545.1 category_na live 2018-03-09T09:52:58Z SMRU1719 PRJEB2395 GCF_001117545.1-RS_2026_01_22 SC SC 45 2018-03-09T09:52:58Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRUQ01 2009-07-10 SMRU1719 2011-11-29T12:03:47Z Prokka current 45 SMRU1719-sc-2011-01-27-1061932 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRUQ01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1719 species_match 98.83 SAMEA1025386 8 Streptococcus pneumoniae 90.62 Streptococcus pneumoniae 1313 PRJEB2395 8 current na Best-placed reference protein set; GeneMarkS-2+ 80627 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 13 13 species Homo sapiens 1950 Streptococcus pneumoniae Streptococcus pneumoniae ERS021229 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-07-10 v1.2.4 2012-01-20T20:01:25.286 99.31 2071027 90.62 1313 2168 2024-02-05T16:22:07.000 2071027 80627 2071016 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 173 EBI 100 GCA_001457635.1 GCF_001117545.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_001117545.1 type nasopharynx 98.83 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRUQ00000000.1 2011-11-29T12:03:47Z GCF_001117545.1 haploid public SMRU1719-sc-2011-01-27-1061932 88.91 1.3 45 2015-07-28T08:11:57 GCA_001457635.1 821338 45 6805_6#15 SMRU1719-sc-2011-01-27-1061932 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025386 1313 GCA_001117545.1 Generic.1.0 88.91 SRA GCA_001117545.1 category_na live 2018-03-09T09:52:58Z SMRU1719 PRJEB2395 Annotation submitted by SC SC SC 45 2018-03-09T09:52:58Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRUQ01 2009-07-10 SMRU1719 6.10 2011-11-29T12:03:47Z Prokka current 45 SMRU1719-sc-2011-01-27-1061932 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRUQ01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1719 species_match 98.83 SAMEA1025285 10 Streptococcus pneumoniae 90.86 Streptococcus pneumoniae 1313 PRJEB2395 10 current na 74922 type Streptococcus pneumoniae 2015-07-18 14 14 species Homo sapiens 2050 Streptococcus pneumoniae Streptococcus pneumoniae ERS020959 SC 2009-04-20 v1.2.4 2012-01-20T19:58:26.806 98.53 2087611 90.86 1313 2093 2024-02-05T16:14:49.000 2087611 74922 2087597 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001197615.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 19.1729 https://www.ncbi.nlm.nih.gov/nuccore/CRTD00000000.1 2011-11-29T12:03:47Z GCA_001197615.1 haploid public SMRU1449-sc-2011-01-27-1061662 86.44 0.33 58 2015-07-28T08:11:52 GCA_053203845.1 826171 43 6805_3#9 SMRU1449-sc-2011-01-27-1061662 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025285 1313 GCF_001197615.1 Generic.1.0 86.44 SRA GCF_001197615.1 category_na live 2018-03-09T09:52:53Z SMRU1449 PRJEB2395 GCF_001197615.1-RS_2026_01_25 SC SC 58 2018-03-09T09:52:53Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRTD01 2009-04-20 SMRU1449 2011-11-29T12:03:47Z Prokka current 58 SMRU1449-sc-2011-01-27-1061662 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRTD01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1449 species_match 98.72 SAMEA1025285 10 Streptococcus pneumoniae 90.86 Streptococcus pneumoniae 1313 PRJEB2395 10 current na Best-placed reference protein set; GeneMarkS-2+ 74922 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 14 14 species Homo sapiens 1940 Streptococcus pneumoniae Streptococcus pneumoniae ERS020959 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-20 v1.2.4 2012-01-20T19:58:26.806 98.53 2087611 90.86 1313 2168 2024-02-05T16:14:49.000 2087611 74922 2087597 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 183 EBI 100 GCA_053203845.1 GCF_001197615.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001197615.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 19.1729 https://www.ncbi.nlm.nih.gov/nuccore/CRTD00000000.1 2011-11-29T12:03:47Z GCF_001197615.1 haploid public SMRU1449-sc-2011-01-27-1061662 86.44 0.33 58 2015-07-28T08:11:52 GCA_053203845.1 826171 45 6805_3#9 SMRU1449-sc-2011-01-27-1061662 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025285 1313 GCA_001197615.1 Generic.1.0 86.44 SRA GCA_001197615.1 category_na live 2018-03-09T09:52:53Z SMRU1449 PRJEB2395 Annotation submitted by SC SC SC 58 2018-03-09T09:52:53Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRTD01 2009-04-20 SMRU1449 6.10 2011-11-29T12:03:47Z Prokka current 58 SMRU1449-sc-2011-01-27-1061662 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRTD01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1449 species_match 98.72 SAMEA2239251 10 Streptococcus pneumoniae 93.13 Streptococcus pneumoniae 1313 PRJEB4909 11 current na 90694 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2115 Streptococcus pneumoniae Streptococcus pneumoniae ERS368063 SC 2006/2012 v1.2.4 2014-05-07T08:35:31.716 99.27 2096288 93.13 1313 2162 2024-02-06T05:05:26.000 2098666 73497 2096287 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900019445.1 type CSF 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 77.6327 https://www.ncbi.nlm.nih.gov/nuccore/FDUG00000000.1 2014-03-18T09:35:30Z GCA_900019445.1 haploid public 2011124-sc-2013-11-05T12:10:32Z-1750623 88.96 0.31 64 2015-08-10T19:24:49 GCA_053203845.1 832150 47 11861_5#24 2011124-sc-2013-11-05T12:10:32Z-1750623 Netherlands 11861_5#24 SAMEA2239251 1313 GCF_900019445.1 Generic.1.0 88.96 SRA GCF_900019445.1 category_na live 2018-03-09T10:27:57Z 2842STDY5644634 PRJEB4909 GCF_900019445.1-RS_2026_01_25 SC SC 55 1750623 2018-03-09T10:27:57Z 2014-03-18T00:00:00.000 2011124 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDUG01 2006/2012 2842STDY5644634 2014-03-18T09:35:30Z Prokka current 55 2011124-sc-2013-11-05T12:10:32Z-1750623 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDUG01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644634 species_match 98.75 SAMEA2239251 10 Streptococcus pneumoniae 93.13 Streptococcus pneumoniae 1313 PRJEB4909 11 current na Best-placed reference protein set; GeneMarkS-2+ 90694 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1988 Streptococcus pneumoniae Streptococcus pneumoniae ERS368063 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:31.716 99.27 2096288 93.13 1313 2231 2024-02-06T05:05:26.000 2098666 73497 2096287 CSF Homo sapiens Streptococcus pneumoniae Disease 189 EBI 100 GCA_053203845.1 GCF_900019445.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900019445.1 type CSF 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 77.6327 https://www.ncbi.nlm.nih.gov/nuccore/FDUG00000000.1 2014-03-18T09:35:30Z GCF_900019445.1 haploid public 2011124-sc-2013-11-05T12:10:32Z-1750623 88.96 0.31 64 2015-08-10T19:24:49 GCA_053203845.1 832150 54 11861_5#24 2011124-sc-2013-11-05T12:10:32Z-1750623 Netherlands 11861_5#24 SAMEA2239251 1313 GCA_900019445.1 Generic.1.0 88.96 SRA GCA_900019445.1 category_na live 2018-03-09T10:27:57Z 2842STDY5644634 PRJEB4909 Annotation submitted by SC SC SC 55 1750623 2018-03-09T10:27:57Z 2014-03-18T00:00:00.000 2011124 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDUG01 2006/2012 2842STDY5644634 6.10 2014-03-18T09:35:30Z Prokka current 55 2011124-sc-2013-11-05T12:10:32Z-1750623 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDUG01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644634 species_match 98.75 SAMEA1029404 10 Streptococcus pneumoniae 90.95 Streptococcus pneumoniae 1313 PRJEB2480 10 current na 68609 type Streptococcus pneumoniae 2015-07-14 13 13 species Homo sapiens 2090 Streptococcus pneumoniae Streptococcus pneumoniae ERS022502 SC 2010-08-31 v1.2.4 2012-02-09T20:48:42.030 99.47 2104813 90.95 1313 2130 2024-02-06T09:02:32.000 2104813 68609 2104803 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001098805.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/CMHY00000000.1 2012-02-07T17:03:03Z GCA_001098805.1 haploid public SMRU2992-sc-2011-01-27-1063205 90.68 0.58 56 2015-07-28T08:13:17 GCA_001457635.1 834344 40 7038_6#16 SMRU2992-sc-2011-01-27-1063205 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029404 1313 GCF_001098805.1 Generic.1.0 90.68 SRA GCF_001098805.1 category_na live 2018-03-09T11:45:18Z SMRU2992 PRJEB2480 GCF_001098805.1-RS_2026_01_24 SC SC 56 2018-03-09T11:45:18Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMHY01 2010-08-31 SMRU2992 2012-02-07T17:03:03Z Prokka current 56 SMRU2992-sc-2011-01-27-1063205 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMHY01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2992 species_match 98.7 SAMEA1029404 10 Streptococcus pneumoniae 90.95 Streptococcus pneumoniae 1313 PRJEB2480 10 current na Best-placed reference protein set; GeneMarkS-2+ 68609 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 13 13 species Homo sapiens 2024 Streptococcus pneumoniae Streptococcus pneumoniae ERS022502 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-08-31 v1.2.4 2012-02-09T20:48:42.030 99.47 2104813 90.95 1313 2239 2024-02-06T09:02:32.000 2104813 68609 2104803 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 173 EBI 100 GCA_001457635.1 GCF_001098805.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_001098805.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/CMHY00000000.1 2012-02-07T17:03:03Z GCF_001098805.1 haploid public SMRU2992-sc-2011-01-27-1063205 90.68 0.58 56 2015-07-28T08:13:17 GCA_001457635.1 834344 42 7038_6#16 SMRU2992-sc-2011-01-27-1063205 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029404 1313 GCA_001098805.1 Generic.1.0 90.68 SRA GCA_001098805.1 category_na live 2018-03-09T11:45:18Z SMRU2992 PRJEB2480 Annotation submitted by SC SC SC 56 2018-03-09T11:45:18Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMHY01 2010-08-31 SMRU2992 6.10 2012-02-07T17:03:03Z Prokka current 56 SMRU2992-sc-2011-01-27-1063205 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMHY01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2992 species_match 98.7 SAMEA1025462 12 Streptococcus pneumoniae 87.32 Streptococcus pneumoniae 1313 PRJEB2395 12 current na 59460 type Streptococcus pneumoniae 2015-07-18 14 14 species Homo sapiens 2180 Streptococcus pneumoniae Streptococcus pneumoniae ERS020969 SC 2009-04-21 v1.2.4 2012-01-20T19:58:33.860 99.31 2170208 87.32 1313 2220 2024-02-06T09:04:18.000 2170208 59460 2170188 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001162565.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRSS00000000.1 2011-11-29T12:03:47Z GCA_001162565.1 haploid public SMRU1459-sc-2011-01-27-1061672 89.77 0.94 90 2015-07-28T08:11:53 GCA_001457635.1 858173 40 6805_3#19 SMRU1459-sc-2011-01-27-1061672 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025462 1313 GCF_001162565.1 Generic.1.0 89.77 SRA GCF_001162565.1 category_na live 2018-03-09T12:11:20Z SMRU1459 PRJEB2395 GCF_001162565.1-RS_2026_02_04 SC SC 90 2018-03-09T12:11:20Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRSS01 2009-04-21 SMRU1459 2011-11-29T12:03:47Z Prokka current 90 SMRU1459-sc-2011-01-27-1061672 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRSS01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1459 species_match 98.71 SAMEA1025462 12 Streptococcus pneumoniae 87.32 Streptococcus pneumoniae 1313 PRJEB2395 12 current na Best-placed reference protein set; GeneMarkS-2+ 59460 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-04 14 14 species Homo sapiens 2100 Streptococcus pneumoniae Streptococcus pneumoniae ERS020969 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-21 v1.2.4 2012-01-20T19:58:33.860 99.31 2170208 87.32 1313 2322 2024-02-06T09:04:18.000 2170208 59460 2170188 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 179 EBI 100 GCA_001457635.1 GCF_001162565.1-RS_2026_02_04 SLX Streptococcus pneumoniae GCF_001162565.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRSS00000000.1 2011-11-29T12:03:47Z GCF_001162565.1 haploid public SMRU1459-sc-2011-01-27-1061672 89.77 0.94 90 2015-07-28T08:11:53 GCA_001457635.1 858173 43 6805_3#19 SMRU1459-sc-2011-01-27-1061672 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025462 1313 GCA_001162565.1 Generic.1.0 89.77 SRA GCA_001162565.1 category_na live 2018-03-09T12:11:20Z SMRU1459 PRJEB2395 Annotation submitted by SC SC SC 90 2018-03-09T12:11:20Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRSS01 2009-04-21 SMRU1459 6.10 2011-11-29T12:03:47Z Prokka current 90 SMRU1459-sc-2011-01-27-1061672 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRSS01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1459 species_match 98.71 SAMEA1025229 13 Streptococcus pneumoniae 86.22 Streptococcus pneumoniae 1313 PRJEB2395 13 current na 56958 type Streptococcus pneumoniae 2015-07-18 13 13 species Homo sapiens 2201 Streptococcus pneumoniae Streptococcus pneumoniae ERS020929 SC 2009-04-06 v1.2.4 2012-01-20T19:58:05.350 99.31 2194449 86.22 1313 2242 2024-02-06T09:03:57.000 2194449 56958 2194433 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001200795.1 type nasopharynx 98.7 OK 40.0 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRSI00000000.1 2011-11-29T12:03:46Z GCA_001200795.1 haploid public SMRU1419-sc-2011-01-27-1061632 89.63 6.64 89 2015-07-28T08:11:50 GCA_001457635.1 872367 41 6805_2#3 SMRU1419-sc-2011-01-27-1061632 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025229 1313 GCF_001200795.1 Generic.1.0 89.63 SRA GCF_001200795.1 category_na live 2018-03-09T12:05:03Z SMRU1419 PRJEB2395 GCF_001200795.1-RS_2026_02_04 SC SC 89 2018-03-09T12:05:03Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRSI01 2009-04-06 SMRU1419 2011-11-29T12:03:46Z Prokka current 89 SMRU1419-sc-2011-01-27-1061632 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRSI01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1419 species_match 98.7 SAMEA1025229 13 Streptococcus pneumoniae 86.22 Streptococcus pneumoniae 1313 PRJEB2395 13 current na Best-placed reference protein set; GeneMarkS-2+ 56958 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-04 13 13 species Homo sapiens 2150 Streptococcus pneumoniae Streptococcus pneumoniae ERS020929 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-06 v1.2.4 2012-01-20T19:58:05.350 99.31 2194449 86.22 1313 2356 2024-02-06T09:03:57.000 2194449 56958 2194433 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 162 EBI 100 GCA_001457635.1 GCF_001200795.1-RS_2026_02_04 SLX Streptococcus pneumoniae GCF_001200795.1 type nasopharynx 98.7 OK 40.0 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRSI00000000.1 2011-11-29T12:03:46Z GCF_001200795.1 haploid public SMRU1419-sc-2011-01-27-1061632 89.63 6.64 89 2015-07-28T08:11:50 GCA_001457635.1 872367 44 6805_2#3 SMRU1419-sc-2011-01-27-1061632 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025229 1313 GCA_001200795.1 Generic.1.0 89.63 SRA GCA_001200795.1 category_na live 2018-03-09T12:05:03Z SMRU1419 PRJEB2395 Annotation submitted by SC SC SC 89 2018-03-09T12:05:03Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRSI01 2009-04-06 SMRU1419 6.10 2011-11-29T12:03:46Z Prokka current 89 SMRU1419-sc-2011-01-27-1061632 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRSI01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1419 species_match 98.7 SAMEA1025076 11 Streptococcus pneumoniae 89.05 Streptococcus pneumoniae 1313 PRJEB2393 13 current na 47846 type Streptococcus pneumoniae 2015-07-18 13 13 species Homo sapiens 2100 Streptococcus pneumoniae Streptococcus pneumoniae ERS020316 SC 2008-10-07 v1.2.4 2012-01-20T19:51:17.110 99.31 2124478 89.05 1313 2142 2024-02-06T09:04:11.000 2124500 45850 2124453 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001151625.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRLX00000000.1 2011-11-15T17:01:01Z GCA_001151625.1 haploid public SMRU806-sc-2011-01-27-1060995 89.62 1.9 88 2015-07-28T08:11:25 GCA_001457635.1 841964 42 6755_2#14 SMRU806-sc-2011-01-27-1060995 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025076 1313 GCF_001151625.1 Generic.1.0 89.62 SRA GCF_001151625.1 category_na live 2018-03-09T12:09:38Z SMRU806 PRJEB2393 GCF_001151625.1-RS_2026_01_22 SC SC 86 2018-03-09T12:09:38Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRLX01 2008-10-07 SMRU806 2011-11-15T17:01:01Z Prokka current 86 SMRU806-sc-2011-01-27-1060995 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRLX01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU806 species_match 98.72 SAMEA1025076 11 Streptococcus pneumoniae 89.05 Streptococcus pneumoniae 1313 PRJEB2393 13 current na Best-placed reference protein set; GeneMarkS-2+ 47846 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 13 13 species Homo sapiens 2025 Streptococcus pneumoniae Streptococcus pneumoniae ERS020316 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-10-07 v1.2.4 2012-01-20T19:51:17.110 99.31 2124478 89.05 1313 2240 2024-02-06T09:04:11.000 2124500 45850 2124453 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 169 EBI 100 GCA_001457635.1 GCF_001151625.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_001151625.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRLX00000000.1 2011-11-15T17:01:01Z GCF_001151625.1 haploid public SMRU806-sc-2011-01-27-1060995 89.62 1.9 88 2015-07-28T08:11:25 GCA_001457635.1 841964 46 6755_2#14 SMRU806-sc-2011-01-27-1060995 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025076 1313 GCA_001151625.1 Generic.1.0 89.62 SRA GCA_001151625.1 category_na live 2018-03-09T12:09:38Z SMRU806 PRJEB2393 Annotation submitted by SC SC SC 86 2018-03-09T12:09:38Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRLX01 2008-10-07 SMRU806 6.10 2011-11-15T17:01:01Z Prokka current 86 SMRU806-sc-2011-01-27-1060995 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRLX01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU806 species_match 98.72 SAMEA1024077 16 Streptococcus pneumoniae 88.44 Streptococcus pneumoniae 1313 PRJEB2357 16 current na 45275 type Streptococcus pneumoniae 2015-07-11 14 14 species Homo sapiens 2144 Streptococcus pneumoniae Streptococcus pneumoniae ERS019659 SC 2008-06-26 v1.2.4 2012-01-20T19:46:38.146 99.26 2149263 88.44 1313 2186 2024-02-06T09:03:51.000 2149263 45275 2149255 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001086445.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CKJU00000000.1 2011-10-11T09:20:06Z GCA_001086445.1 haploid public SMRU501-sc-2011-01-27-1060690 90.04 0.31 91 2016-01-29T08:05:25 GCA_001457635.1 850170 42 6631_6#21 SMRU501-sc-2011-01-27-1060690 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024077 1313 GCF_001086445.1 Generic.1.0 90.04 SRA GCF_001086445.1 category_na live 2018-03-09T12:03:36Z SMRU501 PRJEB2357 GCF_001086445.1-RS_2026_02_02 SC SC 91 2018-03-09T12:03:36Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKJU01 2008-06-26 14 2011-10-11T09:20:06Z Prokka current 91 SMRU501-sc-2011-01-27-1060690 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKJU01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU501 species_match 98.7 SAMEA1024077 16 Streptococcus pneumoniae 88.44 Streptococcus pneumoniae 1313 PRJEB2357 16 current na Best-placed reference protein set; GeneMarkS-2+ 45275 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-02 14 14 species Homo sapiens 2065 Streptococcus pneumoniae Streptococcus pneumoniae ERS019659 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-06-26 v1.2.4 2012-01-20T19:46:38.146 99.26 2149263 88.44 1313 2287 2024-02-06T09:03:51.000 2149263 45275 2149255 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 177 EBI 100 GCA_001457635.1 GCF_001086445.1-RS_2026_02_02 SLX Streptococcus pneumoniae GCF_001086445.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CKJU00000000.1 2011-10-11T09:20:06Z GCF_001086445.1 haploid public SMRU501-sc-2011-01-27-1060690 90.04 0.31 91 2016-01-29T08:05:25 GCA_001457635.1 850170 45 6631_6#21 SMRU501-sc-2011-01-27-1060690 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024077 1313 GCA_001086445.1 Generic.1.0 90.04 SRA GCA_001086445.1 category_na live 2018-03-09T12:03:36Z SMRU501 PRJEB2357 Annotation submitted by SC SC SC 91 2018-03-09T12:03:36Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKJU01 2008-06-26 SMRU501 6.10 2011-10-11T09:20:06Z Prokka current 91 SMRU501-sc-2011-01-27-1060690 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKJU01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU501 species_match 98.7 SAMEA1026443 7 Streptococcus pneumoniae 91.95 Streptococcus pneumoniae 1313 PRJEB2417 7 current na 127636 type Streptococcus pneumoniae 2017-06-27 20 20 species Homo sapiens 2065 Streptococcus pneumoniae ERS025152 SC 2011-01-11 v1.2.4 2012-01-20T20:29:47.460 99.23 2075944 91.95 1313 2116 2017-06-24T15:59:14.000 2075944 127636 2075935 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900193185.1 type Nasophaynx 98.79 OK 39.5 Streptococcus pneumoniae 71.8008 https://www.ncbi.nlm.nih.gov/nuccore/FYWZ00000000.1 2011-09-14 GCA_900193185.1 haploid ERS025152 86.99 0.62 32 2017-06-28T08:06:13 GCA_053203845.1 820634 51 6486_8#3 United Kingdom UoS5121-sc-2011-03-11-1098962; 6486_83 1313 GCF_900193185.1 Generic.1.0 86.99 SRA Sample Description GCF_900193185.1 category_na live 2017-06-22 UoS5121 PRJEB2417 GCF_900193185.1-RS_2025_08_31 SC 32 1098962 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYWZ01 2011-01-11 UoS5121 Prokka current 32 ERS025152 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYWZ01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS5121 species_match 98.79 SAMEA1026443 7 Streptococcus pneumoniae 91.95 Streptococcus pneumoniae 1313 PRJEB2417 7 current na Best-placed reference protein set; GeneMarkS-2+ 127636 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-31 20 20 species Homo sapiens 1960 Streptococcus pneumoniae ERS025152 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2011-01-11 v1.2.4 2012-01-20T20:29:47.460 99.23 2075944 91.95 1313 2175 2017-06-24T15:59:14.000 2075944 127636 2075935 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 161 EBI 100 GCA_053203845.1 GCF_900193185.1-RS_2025_08_31 SLX Streptococcus pneumoniae GCF_900193185.1 type Nasophaynx 98.79 OK 39.5 Streptococcus pneumoniae 71.8008 https://www.ncbi.nlm.nih.gov/nuccore/FYWZ00000000.1 2011-09-14 GCF_900193185.1 haploid ERS025152 86.99 0.62 32 2017-06-28T08:06:13 GCA_053203845.1 820634 54 6486_8#3 United Kingdom UoS5121-sc-2011-03-11-1098962; 6486_83 1313 GCA_900193185.1 Generic.1.0 86.99 SRA Sample Description GCA_900193185.1 category_na live 2017-06-22 UoS5121 PRJEB2417 Annotation submitted by SC SC 32 1098962 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYWZ01 2011-01-11 UoS5121 6.10 Prokka current 32 ERS025152 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYWZ01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS5121 species_match 98.79 SAMEA2239261 4 Streptococcus pneumoniae 96.48 Streptococcus pneumoniae 1313 PRJEB4909 5 current na 249988 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1952 Streptococcus pneumoniae Streptococcus pneumoniae ERS368073 SC 2006/2012 v1.2.4 2014-05-07T08:35:32.376 98.56 1978193 96.48 1313 1998 2024-02-06T05:07:24.000 1979772 119369 1978186 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900016925.1 type CSF 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 21.0166 https://www.ncbi.nlm.nih.gov/nuccore/FDUL00000000.1 2014-03-18T09:35:31Z GCA_900016925.1 haploid public 2012019-sc-2013-11-05T12:10:43Z-1750633 86.98 0.31 28 2015-08-10T19:24:49 GCA_053203845.1 785757 46 11861_5#35 2012019-sc-2013-11-05T12:10:43Z-1750633 Netherlands 11861_5#35 SAMEA2239261 1313 GCF_900016925.1 Generic.1.0 86.98 SRA GCF_900016925.1 category_na live 2018-03-09T10:28:02Z 2842STDY5644644 PRJEB4909 GCF_900016925.1-RS_2025_09_28 SC SC 23 1750633 2018-03-09T10:28:02Z 2014-03-18T00:00:00.000 2012019 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDUL01 2006/2012 2842STDY5644644 2014-03-18T09:35:31Z Prokka current 23 2012019-sc-2013-11-05T12:10:43Z-1750633 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDUL01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644644 species_match 98.79 SAMEA2239261 4 Streptococcus pneumoniae 96.48 Streptococcus pneumoniae 1313 PRJEB4909 5 current na Best-placed reference protein set; GeneMarkS-2+ 249988 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1873 Streptococcus pneumoniae Streptococcus pneumoniae ERS368073 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:32.376 98.56 1978193 96.48 1313 2070 2024-02-06T05:07:24.000 1979772 119369 1978186 CSF Homo sapiens Streptococcus pneumoniae Disease 144 EBI 100 GCA_053203845.1 GCF_900016925.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900016925.1 type CSF 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 21.0166 https://www.ncbi.nlm.nih.gov/nuccore/FDUL00000000.1 2014-03-18T09:35:31Z GCF_900016925.1 haploid public 2012019-sc-2013-11-05T12:10:43Z-1750633 86.98 0.31 28 2015-08-10T19:24:49 GCA_053203845.1 785757 53 11861_5#35 2012019-sc-2013-11-05T12:10:43Z-1750633 Netherlands 11861_5#35 SAMEA2239261 1313 GCA_900016925.1 Generic.1.0 86.98 SRA GCA_900016925.1 category_na live 2018-03-09T10:28:02Z 2842STDY5644644 PRJEB4909 Annotation submitted by SC SC SC 23 1750633 2018-03-09T10:28:02Z 2014-03-18T00:00:00.000 2012019 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDUL01 2006/2012 2842STDY5644644 6.10 2014-03-18T09:35:31Z Prokka current 23 2012019-sc-2013-11-05T12:10:43Z-1750633 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDUL01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644644 species_match 98.79 SAMEA2238585 6 Streptococcus pneumoniae 93.13 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 130582 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2008 Streptococcus pneumoniae Streptococcus pneumoniae ERS367397 SC 2006/2012 v1.2.4 2014-05-07T08:34:41.356 99.31 2043595 93.13 1313 2053 2024-02-06T05:20:14.000 2046431 114690 2043593 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900023425.1 type CSF 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FECM00000000.1 2014-03-18T09:35:29Z GCA_900023425.1 haploid public 2082239-sc-2013-11-05T11:58:59Z-1749946 86.73 0.62 38 2015-08-10T19:24:18 GCA_053203845.1 809230 45 11861_1#22 2082239-sc-2013-11-05T11:58:59Z-1749946 Netherlands 11861_1#22 SAMEA2238585 1313 GCF_900023425.1 Generic.1.0 86.73 SRA GCF_900023425.1 category_na live 2018-03-09T10:29:30Z 2842STDY5643957 PRJEB4909 GCF_900023425.1-RS_2025_09_21 SC SC 29 1749946 2018-03-09T10:29:30Z 2014-03-18T00:00:00.000 2082239 https://www.ncbi.nlm.nih.gov/Traces/wgs/FECM01 2006/2012 2842STDY5643957 2014-03-18T09:35:29Z Prokka current 29 2082239-sc-2013-11-05T11:58:59Z-1749946 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FECM01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643957 species_match 98.79 SAMEA2238585 6 Streptococcus pneumoniae 93.13 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 130582 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1900 Streptococcus pneumoniae Streptococcus pneumoniae ERS367397 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:41.356 99.31 2043595 93.13 1313 2109 2024-02-06T05:20:14.000 2046431 114690 2043593 CSF Homo sapiens Streptococcus pneumoniae Disease 158 EBI 100 GCA_053203845.1 GCF_900023425.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900023425.1 type CSF 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FECM00000000.1 2014-03-18T09:35:29Z GCF_900023425.1 haploid public 2082239-sc-2013-11-05T11:58:59Z-1749946 86.73 0.62 38 2015-08-10T19:24:18 GCA_053203845.1 809230 51 11861_1#22 2082239-sc-2013-11-05T11:58:59Z-1749946 Netherlands 11861_1#22 SAMEA2238585 1313 GCA_900023425.1 Generic.1.0 86.73 SRA GCA_900023425.1 category_na live 2018-03-09T10:29:30Z 2842STDY5643957 PRJEB4909 Annotation submitted by SC SC SC 29 1749946 2018-03-09T10:29:30Z 2014-03-18T00:00:00.000 2082239 https://www.ncbi.nlm.nih.gov/Traces/wgs/FECM01 2006/2012 2842STDY5643957 6.10 2014-03-18T09:35:29Z Prokka current 29 2082239-sc-2013-11-05T11:58:59Z-1749946 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FECM01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643957 species_match 98.79 SAMEA1026753 7 Streptococcus pneumoniae 92.0 Streptococcus pneumoniae 1313 PRJEB2417 8 current na 128776 type Streptococcus pneumoniae 2017-06-27 20 20 species Homo sapiens 2056 Streptococcus pneumoniae ERS023298 SC 2009-03-10 v1.2.4 2011-09-23T19:14:02.046 99.31 2072256 92.0 1313 2103 2017-06-24T15:45:24.000 2075745 99102 2072251 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900191705.1 type Nasophaynx 98.78 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FYRC00000000.1 2011-09-20 GCA_900191705.1 haploid ERS023298 86.88 0.62 50 2017-06-28T08:06:21 GCA_053203845.1 820023 47 6512_4#4 United Kingdom UoS3259-sc-2011-02-14-1078352; 6512_44 1313 GCF_900191705.1 Generic.1.0 86.88 SRA Sample Description GCF_900191705.1 category_na live 2017-06-22 UoS3259 PRJEB2417 GCF_900191705.1-RS_2025_08_31 SC 37 1078352 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYRC01 2009-03-10 UoS3259 Prokka current 37 ERS023298 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYRC01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS3259 species_match 98.78 SAMEA1026753 7 Streptococcus pneumoniae 92.0 Streptococcus pneumoniae 1313 PRJEB2417 8 current na Best-placed reference protein set; GeneMarkS-2+ 128776 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-31 20 20 species Homo sapiens 1951 Streptococcus pneumoniae ERS023298 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-10 v1.2.4 2011-09-23T19:14:02.046 99.31 2072256 92.0 1313 2161 2017-06-24T15:45:24.000 2075745 99102 2072251 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 160 EBI 100 GCA_053203845.1 GCF_900191705.1-RS_2025_08_31 SLX Streptococcus pneumoniae GCF_900191705.1 type Nasophaynx 98.78 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FYRC00000000.1 2011-09-20 GCF_900191705.1 haploid ERS023298 86.88 0.62 50 2017-06-28T08:06:21 GCA_053203845.1 820023 50 6512_4#4 United Kingdom UoS3259-sc-2011-02-14-1078352; 6512_44 1313 GCA_900191705.1 Generic.1.0 86.88 SRA Sample Description GCA_900191705.1 category_na live 2017-06-22 UoS3259 PRJEB2417 Annotation submitted by SC SC 37 1078352 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYRC01 2009-03-10 UoS3259 6.10 Prokka current 37 ERS023298 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYRC01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS3259 species_match 98.78 SAMEA1025710 8 Streptococcus pneumoniae 91.47 Streptococcus pneumoniae 1313 PRJEB2397 8 current na 93672 type Streptococcus pneumoniae 2015-07-18 20 20 species Homo sapiens 2176 Streptococcus pneumoniae Streptococcus pneumoniae ERS021257 SC 2009-07-20 v1.2.4 2012-01-20T20:01:43.280 99.47 2159488 91.47 1313 2217 2024-02-05T16:22:56.000 2159488 93672 2159455 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001205695.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/CRVP00000000.1 2011-11-29T12:03:48Z GCA_001205695.1 haploid public SMRU1747-sc-2011-01-27-1061960 90.01 2.25 52 2015-07-28T08:11:59 GCA_053203845.1 852123 41 6805_7#18 SMRU1747-sc-2011-01-27-1061960 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025710 1313 GCF_001205695.1 Generic.1.0 90.01 SRA GCF_001205695.1 category_na live 2018-03-09T09:52:59Z SMRU1747 PRJEB2397 GCF_001205695.1-RS_2026_02_04 SC SC 52 2018-03-09T09:52:59Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRVP01 2009-07-20 SMRU1747 2011-11-29T12:03:48Z Prokka current 52 SMRU1747-sc-2011-01-27-1061960 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRVP01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1747 species_match 98.72 SAMEA1025710 8 Streptococcus pneumoniae 91.47 Streptococcus pneumoniae 1313 PRJEB2397 8 current na Best-placed reference protein set; GeneMarkS-2+ 93672 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-04 20 20 species Homo sapiens 2057 Streptococcus pneumoniae Streptococcus pneumoniae ERS021257 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-07-20 v1.2.4 2012-01-20T20:01:43.280 99.47 2159488 91.47 1313 2298 2024-02-05T16:22:56.000 2159488 93672 2159455 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 197 EBI 100 GCA_053203845.1 GCF_001205695.1-RS_2026_02_04 SLX Streptococcus pneumoniae GCF_001205695.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/CRVP00000000.1 2011-11-29T12:03:48Z GCF_001205695.1 haploid public SMRU1747-sc-2011-01-27-1061960 90.01 2.25 52 2015-07-28T08:11:59 GCA_053203845.1 852123 44 6805_7#18 SMRU1747-sc-2011-01-27-1061960 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025710 1313 GCA_001205695.1 Generic.1.0 90.01 SRA GCA_001205695.1 category_na live 2018-03-09T09:52:59Z SMRU1747 PRJEB2397 Annotation submitted by SC SC SC 52 2018-03-09T09:52:59Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRVP01 2009-07-20 SMRU1747 6.10 2011-11-29T12:03:48Z Prokka current 52 SMRU1747-sc-2011-01-27-1061960 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRVP01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1747 species_match 98.72 SAMEA2382844 7 Streptococcus pneumoniae 91.68 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 115956 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2075 Streptococcus pneumoniae Streptococcus pneumoniae ERS409169 SC 2006/2012 v1.2.4 2014-07-10T08:06:48.340 98.59 2103507 91.68 1313 2121 2024-02-06T07:00:17.000 2105444 88989 2103503 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900024155.1 type blood 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 21.9128 https://www.ncbi.nlm.nih.gov/nuccore/FDIV00000000.1 2014-07-09T17:25:44Z GCA_900024155.1 haploid public 2061651_II-sc-1870092 87.88 0.31 50 2015-08-10T19:43:37 GCA_053203845.1 832690 46 12718_5#14 2061651_II-sc-1870092 Netherlands 12718_5#14 SAMEA2382844 1313 GCF_900024155.1 Generic.1.0 87.88 SRA GCF_900024155.1 category_na live 2018-03-09T10:43:39Z 2842STDY5753387 PRJEB4909 GCF_900024155.1-RS_2025_09_21 SC SC 42 1870092 2018-03-09T10:43:39Z 2014-07-09T00:00:00.000 2061651_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDIV01 2006/2012 2842STDY5753387 2014-07-09T17:25:44Z Prokka current 42 2061651_II-sc-1870092 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDIV01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753387 species_match 98.71 SAMEA2382844 7 Streptococcus pneumoniae 91.68 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 115956 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1955 Streptococcus pneumoniae Streptococcus pneumoniae ERS409169 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-10T08:06:48.340 98.59 2103507 91.68 1313 2187 2024-02-06T07:00:17.000 2105444 88989 2103503 blood Homo sapiens Streptococcus pneumoniae Disease 180 EBI 100 GCA_053203845.1 GCF_900024155.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900024155.1 type blood 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 21.9128 https://www.ncbi.nlm.nih.gov/nuccore/FDIV00000000.1 2014-07-09T17:25:44Z GCF_900024155.1 haploid public 2061651_II-sc-1870092 87.88 0.31 50 2015-08-10T19:43:37 GCA_053203845.1 832690 52 12718_5#14 2061651_II-sc-1870092 Netherlands 12718_5#14 SAMEA2382844 1313 GCA_900024155.1 Generic.1.0 87.88 SRA GCA_900024155.1 category_na live 2018-03-09T10:43:39Z 2842STDY5753387 PRJEB4909 Annotation submitted by SC SC SC 42 1870092 2018-03-09T10:43:39Z 2014-07-09T00:00:00.000 2061651_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDIV01 2006/2012 2842STDY5753387 6.10 2014-07-09T17:25:44Z Prokka current 42 2061651_II-sc-1870092 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDIV01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753387 species_match 98.71 SAMEA1026607 9 Streptococcus pneumoniae 91.48 Streptococcus pneumoniae 1313 PRJEB2417 9 current na 79820 type Streptococcus pneumoniae 2017-06-27 20 20 species Homo sapiens 2019 Streptococcus pneumoniae ERS023357 SC 2009-12-08 v1.2.4 2011-09-23T19:14:25.040 98.42 2049283 91.48 1313 2071 2017-06-24T15:49:34.000 2049283 79820 2049275 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900192075.1 type Nasophaynx 98.75 OK 39.5 Streptococcus pneumoniae 16.305 https://www.ncbi.nlm.nih.gov/nuccore/FYRZ00000000.1 2011-09-20 GCA_900192075.1 haploid ERS023357 88.8 0.31 47 2017-06-28T08:06:25 GCA_001457635.1 812696 52 6512_6#17 United Kingdom UoS4155-sc-2011-02-14-1078411; 6512_617 1313 GCF_900192075.1 Generic.1.0 88.8 SRA Sample Description GCF_900192075.1 category_na live 2017-06-22 UoS4155 PRJEB2417 GCF_900192075.1-RS_2025_08_31 SC 47 1078411 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYRZ01 2009-12-08 UoS4155 Prokka current 47 ERS023357 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYRZ01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS4155 species_match 98.75 SAMEA1026607 9 Streptococcus pneumoniae 91.48 Streptococcus pneumoniae 1313 PRJEB2417 9 current na Best-placed reference protein set; GeneMarkS-2+ 79820 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-31 20 20 species Homo sapiens 1963 Streptococcus pneumoniae ERS023357 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-12-08 v1.2.4 2011-09-23T19:14:25.040 98.42 2049283 91.48 1313 2168 2017-06-24T15:49:34.000 2049283 79820 2049275 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 150 EBI 100 GCA_001457635.1 GCF_900192075.1-RS_2025_08_31 SLX Streptococcus pneumoniae GCF_900192075.1 type Nasophaynx 98.75 OK 39.5 Streptococcus pneumoniae 16.305 https://www.ncbi.nlm.nih.gov/nuccore/FYRZ00000000.1 2011-09-20 GCF_900192075.1 haploid ERS023357 88.8 0.31 47 2017-06-28T08:06:25 GCA_001457635.1 812696 55 6512_6#17 United Kingdom UoS4155-sc-2011-02-14-1078411; 6512_617 1313 GCA_900192075.1 Generic.1.0 88.8 SRA Sample Description GCA_900192075.1 category_na live 2017-06-22 UoS4155 PRJEB2417 Annotation submitted by SC SC 47 1078411 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYRZ01 2009-12-08 UoS4155 6.10 Prokka current 47 ERS023357 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYRZ01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS4155 species_match 98.75 SAMEA2382670 8 Streptococcus pneumoniae 91.88 Streptococcus pneumoniae 1313 PRJEB4909 9 current na 94262 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2001 Streptococcus pneumoniae Streptococcus pneumoniae ERS408995 SC 2006/2012 v1.2.4 2014-07-03T08:07:06.366 98.31 2062012 91.88 1313 2047 2024-02-06T06:57:00.000 2064019 74360 2062009 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900047755.1 type blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 13.9044 https://www.ncbi.nlm.nih.gov/nuccore/FDCI00000000.1 2014-07-02T15:07:57Z GCA_900047755.1 haploid public 992005_II-sc-1869916 86.34 0.31 49 2015-08-10T19:42:14 GCA_053203845.1 815593 46 12673_7#30 992005_II-sc-1869916 Netherlands 12673_7#30 SAMEA2382670 1313 GCF_900047755.1 Generic.1.0 86.34 SRA GCF_900047755.1 category_na live 2018-03-09T10:43:22Z 2842STDY5753211 PRJEB4909 GCF_900047755.1-RS_2025_09_21 SC SC 41 1869916 2018-03-09T10:43:22Z 2014-07-02T00:00:00.000 992005_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDCI01 2006/2012 2842STDY5753211 2014-07-02T15:07:57Z Prokka current 41 992005_II-sc-1869916 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDCI01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753211 species_match 98.79 SAMEA2382670 8 Streptococcus pneumoniae 91.88 Streptococcus pneumoniae 1313 PRJEB4909 9 current na Best-placed reference protein set; GeneMarkS-2+ 94262 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1901 Streptococcus pneumoniae Streptococcus pneumoniae ERS408995 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-03T08:07:06.366 98.31 2062012 91.88 1313 2123 2024-02-06T06:57:00.000 2064019 74360 2062009 blood Homo sapiens Streptococcus pneumoniae Disease 170 EBI 100 GCA_053203845.1 GCF_900047755.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900047755.1 type blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 13.9044 https://www.ncbi.nlm.nih.gov/nuccore/FDCI00000000.1 2014-07-02T15:07:57Z GCF_900047755.1 haploid public 992005_II-sc-1869916 86.34 0.31 49 2015-08-10T19:42:14 GCA_053203845.1 815593 52 12673_7#30 992005_II-sc-1869916 Netherlands 12673_7#30 SAMEA2382670 1313 GCA_900047755.1 Generic.1.0 86.34 SRA GCA_900047755.1 category_na live 2018-03-09T10:43:22Z 2842STDY5753211 PRJEB4909 Annotation submitted by SC SC SC 41 1869916 2018-03-09T10:43:22Z 2014-07-02T00:00:00.000 992005_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDCI01 2006/2012 2842STDY5753211 6.10 2014-07-02T15:07:57Z Prokka current 41 992005_II-sc-1869916 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDCI01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753211 species_match 98.79 SAMEA1024080 8 Streptococcus pneumoniae 90.8 Streptococcus pneumoniae 1313 PRJEB2357 9 current na 77926 type Streptococcus pneumoniae 2015-07-27 14 14 species Homo sapiens 2051 Streptococcus pneumoniae Streptococcus pneumoniae ERS019640 SC 2008-06-23 v1.2.4 2012-01-20T19:46:25.803 98.45 2088627 90.8 1313 2092 2024-02-06T09:03:51.000 2088643 73882 2088616 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001335795.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 17.1436 https://www.ncbi.nlm.nih.gov/nuccore/CIBT00000000.1 2011-10-11T09:20:03Z GCA_001335795.1 haploid public SMRU482-sc-2011-01-27-1060671 86.43 0.74 54 2016-01-29T08:05:24 GCA_053203845.1 826516 41 6631_6#2 SMRU482-sc-2011-01-27-1060671 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024080 1313 GCF_001335795.1 Generic.1.0 86.43 SRA GCF_001335795.1 category_na live 2018-03-09T12:03:36Z SMRU482 PRJEB2357 GCF_001335795.1-RS_2026_01_20 SC SC 53 2018-03-09T12:03:36Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIBT01 2008-06-23 14 2011-10-11T09:20:03Z Prokka current 53 SMRU482-sc-2011-01-27-1060671 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CIBT01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU482 species_match 98.72 SAMEA1024080 8 Streptococcus pneumoniae 90.8 Streptococcus pneumoniae 1313 PRJEB2357 9 current na Best-placed reference protein set; GeneMarkS-2+ 77926 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-20 14 14 species Homo sapiens 1952 Streptococcus pneumoniae Streptococcus pneumoniae ERS019640 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-06-23 v1.2.4 2012-01-20T19:46:25.803 98.45 2088627 90.8 1313 2167 2024-02-06T09:03:51.000 2088643 73882 2088616 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 170 EBI 100 GCA_053203845.1 GCF_001335795.1-RS_2026_01_20 SLX Streptococcus pneumoniae GCF_001335795.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 17.1436 https://www.ncbi.nlm.nih.gov/nuccore/CIBT00000000.1 2011-10-11T09:20:03Z GCF_001335795.1 haploid public SMRU482-sc-2011-01-27-1060671 86.43 0.74 54 2016-01-29T08:05:24 GCA_053203845.1 826516 45 6631_6#2 SMRU482-sc-2011-01-27-1060671 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024080 1313 GCA_001335795.1 Generic.1.0 86.43 SRA GCA_001335795.1 category_na live 2018-03-09T12:03:36Z SMRU482 PRJEB2357 Annotation submitted by SC SC SC 53 2018-03-09T12:03:36Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIBT01 2008-06-23 SMRU482 6.10 2011-10-11T09:20:03Z Prokka current 53 SMRU482-sc-2011-01-27-1060671 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CIBT01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU482 species_match 98.72 SAMEA1023911 10 Streptococcus pneumoniae 91.8 Streptococcus pneumoniae 1313 PRJEB2357 10 current na 74659 type Streptococcus pneumoniae 2015-07-11 20 20 species Homo sapiens 2156 Streptococcus pneumoniae Streptococcus pneumoniae ERS019375 SC 2008-03-24 v1.2.4 2012-01-20T19:43:24.813 98.97 2152162 91.8 1313 2194 2024-02-05T16:27:44.000 2152172 71724 2152136 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001154245.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 45.4964 https://www.ncbi.nlm.nih.gov/nuccore/CKNH00000000.1 2011-10-25T09:28:12Z GCA_001154245.1 haploid public SMRU217-sc-2011-01-27-1060406 90.04 1.41 51 2016-01-29T08:05:27 GCA_053203845.1 848555 38 6664_1#1 SMRU217-sc-2011-01-27-1060406 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023911 1313 GCF_001154245.1 Generic.1.0 90.04 SRA GCF_001154245.1 category_na live 2018-03-09T09:53:03Z SMRU217 PRJEB2357 GCF_001154245.1-RS_2026_01_25 SC SC 50 2018-03-09T09:53:03Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKNH01 2008-03-24 20 2011-10-25T09:28:12Z Prokka current 50 SMRU217-sc-2011-01-27-1060406 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKNH01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU217 species_match 98.73 SAMEA1023911 10 Streptococcus pneumoniae 91.8 Streptococcus pneumoniae 1313 PRJEB2357 10 current na Best-placed reference protein set; GeneMarkS-2+ 74659 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 20 20 species Homo sapiens 2054 Streptococcus pneumoniae Streptococcus pneumoniae ERS019375 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-03-24 v1.2.4 2012-01-20T19:43:24.813 98.97 2152162 91.8 1313 2281 2024-02-05T16:27:44.000 2152172 71724 2152136 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 185 EBI 100 GCA_053203845.1 GCF_001154245.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001154245.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 45.4964 https://www.ncbi.nlm.nih.gov/nuccore/CKNH00000000.1 2011-10-25T09:28:12Z GCF_001154245.1 haploid public SMRU217-sc-2011-01-27-1060406 90.04 1.41 51 2016-01-29T08:05:27 GCA_053203845.1 848555 42 6664_1#1 SMRU217-sc-2011-01-27-1060406 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023911 1313 GCA_001154245.1 Generic.1.0 90.04 SRA GCA_001154245.1 category_na live 2018-03-09T09:53:03Z SMRU217 PRJEB2357 Annotation submitted by SC SC SC 50 2018-03-09T09:53:03Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKNH01 2008-03-24 SMRU217 6.10 2011-10-25T09:28:12Z Prokka current 50 SMRU217-sc-2011-01-27-1060406 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKNH01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU217 species_match 98.73 SAMEA3353301 3 Streptococcus pneumoniae 91.15 Streptococcus pneumoniae PRJEB3084 3 na 275542 type Streptococcus pneumoniae 2019-05-12 20A 20A Homo sapiens 2073 Streptococcus pneumoniae Streptococcus pneumoniae ERS707656 SC 2012 2015-10-14T08:10:45.173 2104314 91.15 1313 2127 Streptococcus pneumoniae 2024-02-06T15:57:09.000 2104314 275542 2104312 NP Homo sapiens Carriage from large multi-isolate project ST10545 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901254735.1 type NP 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAQUM000000000.1 2015-10-13T13:59:02Z GCA_901254735.1 haploid public GPS_ZA_carriage_SP1303-sc-2277899 87.41 21 2018-03-10T20:09:50 GCA_053203845.1 833350 54 17059_7#69 GPS_ZA_carriage_SP1303-sc-2277899 South Africa 17059_7#69 SAMEA3353301 1313 Generic.1.0 87.41 SRA category_na live 2019-04-18T15:56:54Z GPSC22 PRJEB3084 SC SC 21 2277899 2019-04-18T15:56:54Z 2015-10-13T00:00:00.000 30929 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAQUM01 2012 GPSC22 substr. ST10545 2015-10-13T13:59:02Z Prokka current 21 GPS_ZA_carriage_SP1303-sc-2277899 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAQUM01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-12 GPSC22 species_match 98.74 SAMEA3353255 3 Streptococcus pneumoniae 89.56 Streptococcus pneumoniae PRJEB3084 3 na 274064 type Streptococcus pneumoniae 2019-05-16 20A 20A Homo sapiens 2188 Streptococcus pneumoniae Streptococcus pneumoniae ERS707610 SC 2012 2015-10-14T08:10:43.360 2175460 89.56 1313 2240 Streptococcus pneumoniae 2024-02-06T15:57:08.000 2175547 274064 2175455 NP Homo sapiens Carriage from large multi-isolate project ST10545 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901241305.1 type NP 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAOUU000000000.1 2015-10-13T13:59:34Z GCA_901241305.1 haploid public GPS_ZA_carriage_SP1188-sc-2277853 88.79 28 2018-03-10T20:09:48 GCA_053203845.1 862697 52 17059_6#48 GPS_ZA_carriage_SP1188-sc-2277853 South Africa 17059_6#48 SAMEA3353255 1313 Generic.1.0 88.79 SRA category_na live 2019-04-18T15:56:54Z GPSC22 PRJEB3084 SC SC 26 2277853 2019-04-18T15:56:54Z 2015-10-13T00:00:00.000 30152 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAOUU01 2012 GPSC22 substr. ST10545 2015-10-13T13:59:34Z Prokka current 26 GPS_ZA_carriage_SP1188-sc-2277853 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAOUU01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-16 GPSC22 species_match 98.71 SAMEA3353385 3 Streptococcus pneumoniae 91.54 Streptococcus pneumoniae PRJEB3084 4 na 275555 type Streptococcus pneumoniae 2019-05-12 20A 20A Homo sapiens 2063 Streptococcus pneumoniae Streptococcus pneumoniae ERS707740 SC 2012 2015-10-14T08:10:47.630 2093410 91.54 1313 2115 Streptococcus pneumoniae 2024-02-06T15:57:12.000 2093718 217425 2093409 NP Homo sapiens Carriage from large multi-isolate project ST10545 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901260835.1 type NP 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAARRY000000000.1 2015-10-13T13:58:49Z GCA_901260835.1 haploid public GPS_ZA_carriage_SP1347-sc-2277985 87.33 27 2018-03-10T20:09:53 GCA_053203845.1 829930 52 17059_8#19 GPS_ZA_carriage_SP1347-sc-2277985 South Africa 17059_8#19 SAMEA3353385 1313 Generic.1.0 87.33 SRA category_na live 2019-04-18T15:56:55Z GPSC22 PRJEB3084 SC SC 25 2277985 2019-04-18T15:56:55Z 2015-10-13T00:00:00.000 31166 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAARRY01 2012 GPSC22 substr. ST10545 2015-10-13T13:58:49Z Prokka current 25 GPS_ZA_carriage_SP1347-sc-2277985 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAARRY01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-12 GPSC22 species_match 98.74 SAMEA3353224 4 Streptococcus pneumoniae 91.46 Streptococcus pneumoniae PRJEB3084 4 na 195190 type Streptococcus pneumoniae 2019-05-12 20A 20A Homo sapiens 2055 Streptococcus pneumoniae Streptococcus pneumoniae ERS707579 SC 2012 2015-10-14T08:10:41.813 2095513 91.46 1313 2109 Streptococcus pneumoniae 2024-02-06T15:57:03.000 2095625 195190 2095513 NP Homo sapiens Carriage from large multi-isolate project ST10545 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901239535.1 type NP 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAOOC000000000.1 2015-10-13T13:58:49Z GCA_901239535.1 haploid public GPS_ZA_carriage_SP1172-sc-2277822 87.34 29 2018-03-10T20:09:46 GCA_053203845.1 830930 54 17059_6#32 GPS_ZA_carriage_SP1172-sc-2277822 South Africa 17059_6#32 SAMEA3353224 1313 Generic.1.0 87.34 SRA category_na live 2019-04-18T15:56:53Z GPSC22 PRJEB3084 SC SC 27 2277822 2019-04-18T15:56:53Z 2015-10-13T00:00:00.000 30129 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAOOC01 2012 GPSC22 substr. ST10545 2015-10-13T13:58:49Z Prokka current 27 GPS_ZA_carriage_SP1172-sc-2277822 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAOOC01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-12 GPSC22 species_match 98.75 SAMEA3354346 4 Streptococcus pneumoniae 90.24 Streptococcus pneumoniae PRJEB3084 5 na 194912 type Streptococcus pneumoniae 2019-05-14 20A 20A Homo sapiens 2121 Streptococcus pneumoniae Streptococcus pneumoniae ERS708701 SC 2012 2015-10-14T08:11:17.840 2132475 90.24 1313 2174 Streptococcus pneumoniae 2024-02-06T15:53:13.000 2133009 185036 2132474 NP Homo sapiens Carriage from large multi-isolate project ST10545 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901301405.1 type NP 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAXQY000000000.1 2015-10-13T13:59:04Z GCA_901301405.1 haploid public GPS_ZA_carriage_SP2031-sc-2279007 87.69 26 2018-03-10T20:10:35 GCA_053203845.1 844823 53 17138_4#64 GPS_ZA_carriage_SP2031-sc-2279007 South Africa 17138_4#64 SAMEA3354346 1313 Generic.1.0 87.69 SRA category_na live 2019-04-18T15:38:58Z GPSC22 PRJEB3084 SC SC 23 2279007 2019-04-18T15:38:58Z 2015-10-13T00:00:00.000 30914 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAXQY01 2012 GPSC22 substr. ST10545 2015-10-13T13:59:04Z Prokka current 23 GPS_ZA_carriage_SP2031-sc-2279007 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAXQY01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-14 GPSC22 species_match 98.74 SAMEA3353337 4 Streptococcus pneumoniae 91.07 Streptococcus pneumoniae PRJEB3084 4 na 165790 type Streptococcus pneumoniae 2019-05-13 20A 20A Homo sapiens 2066 Streptococcus pneumoniae Streptococcus pneumoniae ERS707692 SC 2012 2015-10-14T08:10:46.186 2104204 91.07 1313 2122 Streptococcus pneumoniae 2024-02-06T15:57:10.000 2104266 165790 2104202 NP Homo sapiens Carriage from large multi-isolate project ST10545 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901256955.1 type NP 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAARDA000000000.1 2015-10-13T13:59:27Z GCA_901256955.1 haploid public GPS_ZA_carriage_SP1321-sc-2277935 87.33 29 2018-03-10T20:09:51 GCA_053203845.1 834054 56 17059_7#87 GPS_ZA_carriage_SP1321-sc-2277935 South Africa 17059_7#87 SAMEA3353337 1313 Generic.1.0 87.33 SRA category_na live 2019-04-18T15:56:54Z GPSC22 PRJEB3084 SC SC 27 2277935 2019-04-18T15:56:54Z 2015-10-13T00:00:00.000 31483 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAARDA01 2012 GPSC22 substr. ST10545 2015-10-13T13:59:27Z Prokka current 27 GPS_ZA_carriage_SP1321-sc-2277935 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAARDA01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-13 GPSC22 species_match 98.75 SAMEA3309701 5 Streptococcus pneumoniae 90.93 Streptococcus pneumoniae PRJEB3084 5 na 141978 type Streptococcus pneumoniae 2019-05-15 20A 20A Homo sapiens 2070 Streptococcus pneumoniae Streptococcus pneumoniae ERS686163 SC 2009 2015-09-04T08:07:02.616 2094116 90.93 1313 2120 Streptococcus pneumoniae 2024-02-06T15:54:06.000 2094951 141978 2094115 NP swab Homo sapiens Carriage from large multi-isolate project ST12800 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901220675.1 type NP swab 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAALTF000000000.1 2015-09-03T09:33:55Z GCA_901220675.1 haploid public GPS_GM_1719-sc-2206504 86.78 27 2018-03-10T20:04:36 GCA_053203845.1 827662 50 16399_7#35 GPS_GM_1719-sc-2206504 Gambia 16399_7#35 SAMEA3309701 1313 Generic.1.0 86.78 SRA category_na live 2019-04-18T15:39:10Z GPSC85 PRJEB3084 SC SC 24 2206504 2019-04-18T15:39:10Z 2015-09-03T00:00:00.000 3657 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAALTF01 2009 GPSC85 substr. ST12800 2015-09-03T09:33:55Z Prokka current 24 GPS_GM_1719-sc-2206504 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAALTF01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-15 GPSC85 species_match 98.75 SAMEA3309632 3 Streptococcus pneumoniae 90.85 Streptococcus pneumoniae PRJEB3084 4 na 272106 type Streptococcus pneumoniae 2019-05-13 20A 20A Homo sapiens 2067 Streptococcus pneumoniae Streptococcus pneumoniae ERS686094 SC 2009 2015-09-04T08:06:59.436 2094324 90.85 1313 2118 Streptococcus pneumoniae 2024-02-06T15:54:03.000 2095010 141933 2094321 NP swab Homo sapiens Carriage from large multi-isolate project ST10625 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901327355.1 type NP swab 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABBLZ000000000.1 2015-09-03T09:33:54Z GCA_901327355.1 haploid public GPS_GM_1651-sc-2206435 86.7 22 2018-03-10T20:04:33 GCA_053203845.1 827843 51 16399_6#53 GPS_GM_1651-sc-2206435 Gambia 16399_6#53 SAMEA3309632 1313 Generic.1.0 86.7 SRA category_na live 2019-04-18T15:39:09Z GPSC85 PRJEB3084 SC SC 19 2206435 2019-04-18T15:39:09Z 2015-09-03T00:00:00.000 3589 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABBLZ01 2009 GPSC85 substr. ST10625 2015-09-03T09:33:54Z Prokka current 19 GPS_GM_1651-sc-2206435 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABBLZ01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-13 GPSC85 species_match 98.76 SAMEA3353313 5 Streptococcus pneumoniae 87.51 Streptococcus pneumoniae PRJEB3084 5 na 137182 type Streptococcus pneumoniae 2019-05-27 20A 20A Homo sapiens 2257 Streptococcus pneumoniae Streptococcus pneumoniae ERS707668 SC 2012 2015-10-14T08:10:45.566 2225369 87.51 1313 2310 Streptococcus pneumoniae 2024-02-06T15:57:09.000 2225369 137182 2225368 NP Homo sapiens Carriage from large multi-isolate project ST10545 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901244875.1 type NP 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAPIM000000000.1 2015-10-13T13:59:37Z GCA_901244875.1 haploid public GPS_ZA_carriage_SP1218-sc-2277911 88.75 37 2018-03-10T20:09:50 GCA_053203845.1 882096 53 17059_6#78 GPS_ZA_carriage_SP1218-sc-2277911 South Africa 17059_6#78 SAMEA3353313 1313 Generic.1.0 88.75 SRA category_na live 2019-04-18T15:56:54Z GPSC22 PRJEB3084 SC SC 37 2277911 2019-04-18T15:56:54Z 2015-10-13T00:00:00.000 30058 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAPIM01 2012 GPSC22 substr. ST10545 2015-10-13T13:59:37Z Prokka current 37 GPS_ZA_carriage_SP1218-sc-2277911 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAPIM01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-27 GPSC22 species_match 98.71 SAMEA3232367 4 Streptococcus pneumoniae 94.84 Streptococcus pneumoniae PRJEB3084 4 na 191766 type Streptococcus pneumoniae 2019-05-11 20B 20B Homo sapiens 2007 Streptococcus pneumoniae Streptococcus pneumoniae ERS653577 SC 2011 2015-08-20T14:14:12.783 2014928 94.84 1313 2056 Streptococcus pneumoniae 2024-02-06T15:57:59.000 2015964 130828 2014925 blood Homo sapiens IPD from large multi-isolate project ST4745 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901323225.1 type blood 98.71 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABAWS000000000.1 2015-08-12T10:28:03Z GCA_901323225.1 haploid public GPS_NP_0044-sc-2205284 87.09 35 2018-03-10T20:02:29 GCA_053203845.1 801840 49 16288_3#24 GPS_NP_0044-sc-2205284 Nepal 16288_3#24 SAMEA3232367 1313 Generic.1.0 87.09 SRA category_na live 2019-04-18T16:01:01Z GPSC43 PRJEB3084 SC SC 30 2205284 2019-04-18T16:01:01Z 2015-08-12T00:00:00.000 GPS_NP_0044 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABAWS01 2011 GPSC43 substr. ST4745 2015-08-12T10:28:03Z Prokka current 30 GPS_NP_0044-sc-2205284 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABAWS01 Scaffold SOURCE_DATABASE_GENBANK Nepal 2019-05-11 GPSC43 species_match 98.71 SAMEA2814091 5 Streptococcus pneumoniae 91.92 Streptococcus pneumoniae PRJEB3084 7 na 139655 type Streptococcus pneumoniae 2019-05-13 20A 20A Homo sapiens 2047 Streptococcus pneumoniae Streptococcus pneumoniae ERS566459 SC 2009 2015-03-04T08:09:39.910 2081974 91.92 1313 2094 Streptococcus pneumoniae 2024-02-06T15:56:11.000 2083839 130033 2081974 blood Homo sapiens IPD from large multi-isolate project ST10545 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901269515.1 type blood 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAASZI000000000.1 2015-03-03T09:52:28Z GCA_901269515.1 haploid public GPS_ZA_2218-sc-2022575 87.21 36 2018-03-10T19:37:44 GCA_053203845.1 825309 47 14913_3#81 GPS_ZA_2218-sc-2022575 South Africa 14913_3#81 SAMEA2814091 1313 Generic.1.0 87.21 SRA category_na live 2019-04-18T15:56:40Z GPSC22 PRJEB3084 SC SC 29 2022575 2019-04-18T15:56:40Z 2015-03-03T00:00:00.000 25343 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAASZI01 2009 GPSC22 substr. ST10545 2015-03-03T09:52:28Z Prokka current 29 GPS_ZA_2218-sc-2022575 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAASZI01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-13 GPSC22 species_match 98.74 SAMEA3206721 5 Streptococcus pneumoniae 91.8 Streptococcus pneumoniae PRJEB3084 7 na 132556 type Streptococcus pneumoniae 2019-05-14 20A 20A Homo sapiens 2041 Streptococcus pneumoniae Streptococcus pneumoniae ERS638731 SC 2009 2015-06-24T09:08:41.436 2083238 91.8 1313 2091 Streptococcus pneumoniae 2024-02-06T15:56:32.000 2086957 122606 2083237 NP Homo sapiens Carriage from large multi-isolate project ST10545 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901252095.1 type NP 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAQKH000000000.1 2015-06-23T09:53:00Z GCA_901252095.1 haploid public GPS_ZA_carriage_SP96-sc-2191655 87.15 46 2018-03-10T19:54:57 GCA_053203845.1 825973 50 15995_1#1 GPS_ZA_carriage_SP96-sc-2191655 South Africa 15995_1#1 SAMEA3206721 1313 Generic.1.0 87.15 SRA category_na live 2019-04-18T15:56:45Z GPSC22 PRJEB3084 SC SC 34 2191655 2019-04-18T15:56:45Z 2015-06-23T00:00:00.000 687 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAQKH01 2009 GPSC22 substr. ST10545 2015-06-23T09:53:00Z Prokka current 34 GPS_ZA_carriage_SP96-sc-2191655 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAQKH01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-14 GPSC22 species_match 98.75 SAMEA3309589 6 Streptococcus pneumoniae 90.9 Streptococcus pneumoniae PRJEB3084 7 na 140371 type Streptococcus pneumoniae 2019-05-14 20A 20A Homo sapiens 2072 Streptococcus pneumoniae Streptococcus pneumoniae ERS686051 SC 2009 2015-09-04T08:06:57.663 2093138 90.9 1313 2123 Streptococcus pneumoniae 2024-02-06T15:54:02.000 2094270 121864 2093138 NP swab Homo sapiens Carriage from large multi-isolate project ST10625 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901325025.1 type NP swab 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABBDI000000000.1 2015-09-03T09:33:52Z GCA_901325025.1 haploid public GPS_GM_1608-sc-2206391 86.71 27 2018-03-10T20:04:31 GCA_053203845.1 827362 51 16399_6#12 GPS_GM_1608-sc-2206391 Gambia 16399_6#12 SAMEA3309589 1313 Generic.1.0 86.71 SRA category_na live 2019-04-18T15:39:09Z GPSC85 PRJEB3084 SC SC 23 2206391 2019-04-18T15:39:09Z 2015-09-03T00:00:00.000 3638 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABBDI01 2009 GPSC85 substr. ST10625 2015-09-03T09:33:52Z Prokka current 23 GPS_GM_1608-sc-2206391 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABBDI01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-14 GPSC85 species_match 98.76 SAMEA3206767 6 Streptococcus pneumoniae 90.67 Streptococcus pneumoniae PRJEB3084 7 na 139625 type Streptococcus pneumoniae 2019-05-16 20A 20A Homo sapiens 2092 Streptococcus pneumoniae Streptococcus pneumoniae ERS638777 SC 2013 2015-06-10T08:08:51.243 2120349 90.67 1313 2144 Streptococcus pneumoniae 2024-02-06T15:56:33.000 2122474 119280 2120344 NP Homo sapiens Carriage from large multi-isolate project ST10545 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901321405.1 type NP 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABAPF000000000.1 2015-06-09T14:25:23Z GCA_901321405.1 haploid public GPS_ZA_carriage_SP204-sc-2191701 87.61 47 2018-03-10T19:53:29 GCA_053203845.1 841002 52 15841_1#10 GPS_ZA_carriage_SP204-sc-2191701 South Africa 15841_1#10 SAMEA3206767 1313 Generic.1.0 87.61 SRA category_na live 2019-04-18T15:56:45Z GPSC22 PRJEB3084 SC SC 39 2191701 2019-04-18T15:56:45Z 2015-06-09T00:00:00.000 41933 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABAPF01 2013 GPSC22 substr. ST10545 2015-06-09T14:25:23Z Prokka current 39 GPS_ZA_carriage_SP204-sc-2191701 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABAPF01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-16 GPSC22 species_match 98.72 SAMEA2814234 3 Streptococcus pneumoniae 91.82 Streptococcus pneumoniae PRJEB3084 7 na 251138 type Streptococcus pneumoniae 2019-05-12 20A 20A Homo sapiens 2037 Streptococcus pneumoniae Streptococcus pneumoniae ERS566602 SC 2013 2015-03-04T08:09:45.716 2084311 91.82 1313 2084 Streptococcus pneumoniae 2024-02-06T15:56:17.000 2088264 119001 2084310 blood Homo sapiens IPD from large multi-isolate project ST10545 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901339925.1 type blood 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABDIL000000000.1 2015-03-03T09:52:26Z GCA_901339925.1 haploid public GPS_ZA_2446-sc-2022731 87.21 38 2018-03-10T19:37:50 GCA_053203845.1 826161 47 14913_7#24 GPS_ZA_2446-sc-2022731 South Africa 14913_7#24 SAMEA2814234 1313 Generic.1.0 87.21 SRA category_na live 2019-04-18T15:56:41Z GPSC22 PRJEB3084 SC SC 26 2022731 2019-04-18T15:56:41Z 2015-03-03T00:00:00.000 38420 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABDIL01 2013 GPSC22 substr. ST10545 2015-03-03T09:52:26Z Prokka current 26 GPS_ZA_2446-sc-2022731 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABDIL01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-12 GPSC22 species_match 98.73 SAMEA3206712 4 Streptococcus pneumoniae 91.81 Streptococcus pneumoniae PRJEB3084 6 na 249703 type Streptococcus pneumoniae 2019-05-12 20A 20A Homo sapiens 2046 Streptococcus pneumoniae Streptococcus pneumoniae ERS638722 SC 2009 2015-05-27T08:08:13.393 2085240 91.81 1313 2094 Streptococcus pneumoniae 2024-02-06T15:56:31.000 2087862 118077 2085237 NP Homo sapiens Carriage from large multi-isolate project ST10545 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901320935.1 type NP 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABANK000000000.1 2015-05-26T09:45:13Z GCA_901320935.1 haploid public GPS_ZA_carriage_SP83-sc-2191645 87.25 35 2018-03-10T19:50:46 GCA_053203845.1 826657 48 15731_8#87 GPS_ZA_carriage_SP83-sc-2191645 South Africa 15731_8#87 SAMEA3206712 1313 Generic.1.0 87.25 SRA category_na live 2019-04-18T15:56:45Z GPSC22 PRJEB3084 SC SC 26 2191645 2019-04-18T15:56:45Z 2015-05-26T00:00:00.000 628 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABANK01 2009 GPSC22 substr. ST10545 2015-05-26T09:45:13Z Prokka current 26 GPS_ZA_carriage_SP83-sc-2191645 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABANK01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-12 GPSC22 species_match 98.74 SAMEA3309533 4 Streptococcus pneumoniae 92.36 Streptococcus pneumoniae PRJEB3084 5 na 193453 type Streptococcus pneumoniae 2019-05-12 20A 20A Homo sapiens 2054 Streptococcus pneumoniae Streptococcus pneumoniae ERS685995 SC 2009 2015-09-04T08:06:55.563 2065420 92.36 1313 2103 Streptococcus pneumoniae 2024-02-06T15:53:59.000 2071273 117494 2065416 NP swab Homo sapiens Carriage from large multi-isolate project ST5726 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901323775.1 type NP swab 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABAYG000000000.1 2015-09-03T09:33:54Z GCA_901323775.1 haploid public GPS_GM_1553-sc-2206335 86.93 46 2018-03-10T20:04:29 GCA_053203845.1 820953 49 16399_5#55 GPS_GM_1553-sc-2206335 Gambia 16399_5#55 SAMEA3309533 1313 Generic.1.0 86.93 SRA category_na live 2019-04-18T15:39:08Z GPSC85 PRJEB3084 SC SC 25 2206335 2019-04-18T15:39:08Z 2015-09-03T00:00:00.000 3928 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABAYG01 2009 GPSC85 substr. ST5726 2015-09-03T09:33:54Z Prokka current 25 GPS_GM_1553-sc-2206335 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABAYG01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-12 GPSC85 species_match 98.7 SAMEA3175913 5 Streptococcus pneumoniae 93.84 Streptococcus pneumoniae PRJEB3084 6 na 139517 type Streptococcus pneumoniae 2019-05-15 20A 20A Homo sapiens 2084 Streptococcus pneumoniae Streptococcus pneumoniae ERS628861 SC 2012 2015-05-13T13:08:46.133 2097007 93.84 1313 2129 Streptococcus pneumoniae 2024-02-06T15:54:32.000 2098210 109603 2097007 sputum Homo sapiens pneumonia from large multi-isolate project ST9745 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901245315.1 type sputum 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAPKD000000000.1 2015-05-12T09:14:27Z GCA_901245315.1 haploid public GPS_US_PATH6526-sc-2190955 89.68 26 2018-03-10T19:48:06 GCA_053203845.1 828021 45 15608_4#67 GPS_US_PATH6526-sc-2190955 Trinidad and Tobago 15608_4#67 SAMEA3175913 1313 Generic.1.0 89.68 SRA category_na live 2019-04-18T15:39:15Z GPSC172 PRJEB3084 SC SC 22 2190955 2019-04-18T15:39:15Z 2015-05-12T00:00:00.000 PATH6526 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAPKD01 2012 GPSC172 substr. ST9745 2015-05-12T09:14:27Z Prokka current 22 GPS_US_PATH6526-sc-2190955 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAPKD01 Scaffold SOURCE_DATABASE_GENBANK Trinidad and Tobago 2019-05-15 GPSC172 species_match 98.77 SAMEA3233272 4 Streptococcus pneumoniae 92.58 Streptococcus pneumoniae PRJEB3084 6 na 270647 type Streptococcus pneumoniae 2019-05-12 20A 20A Homo sapiens 2068 Streptococcus pneumoniae Streptococcus pneumoniae ERS654465 SC 2010 2015-06-17T09:07:16.400 2076137 92.58 1313 2118 Streptococcus pneumoniae 2024-02-06T15:53:56.000 2078711 105048 2076135 NP swab Homo sapiens Carriage from large multi-isolate project ST5726 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901310915.1 type NP swab 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAZBI000000000.1 2015-06-16T09:36:17Z GCA_901310915.1 haploid public GPS_GM_1396-sc-2206029 87.59 39 2018-03-10T19:54:21 GCA_053203845.1 824738 50 15873_3#76 GPS_GM_1396-sc-2206029 Gambia 15873_3#76 SAMEA3233272 1313 Generic.1.0 87.59 SRA category_na live 2019-04-18T15:39:08Z GPSC85 PRJEB3084 SC SC 30 2206029 2019-04-18T15:39:08Z 2015-06-16T00:00:00.000 SNM5094 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAZBI01 2010 GPSC85 substr. ST5726 2015-06-16T09:36:17Z Prokka current 30 GPS_GM_1396-sc-2206029 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAZBI01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-12 GPSC85 species_match 98.71 SAMEA3207289 5 Streptococcus pneumoniae 89.25 Streptococcus pneumoniae PRJEB3084 8 na 154623 type Streptococcus pneumoniae 2019-05-21 20A 20A Homo sapiens 2094 Streptococcus pneumoniae Streptococcus pneumoniae ERS639299 SC 2011 2015-06-10T08:09:04.176 2105654 89.25 1313 2142 Streptococcus pneumoniae 2024-02-06T15:56:50.000 2107356 99279 2105646 NP Homo sapiens Carriage from large multi-isolate project ST7651 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901232985.1 type NP 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANOF000000000.1 2015-06-09T14:25:24Z GCA_901232985.1 haploid public GPS_ZA_carriage_SP630-sc-2192227 89.03 45 2018-03-10T19:53:41 GCA_001457635.1 832992 48 15841_2#93 GPS_ZA_carriage_SP630-sc-2192227 South Africa 15841_2#93 SAMEA3207289 1313 Generic.1.0 89.03 SRA category_na live 2019-04-18T15:56:49Z GPSC184 PRJEB3084 SC SC 38 2192227 2019-04-18T15:56:49Z 2015-06-09T00:00:00.000 21363 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANOF01 2011 GPSC184 substr. ST7651 2015-06-09T14:25:24Z Prokka current 38 GPS_ZA_carriage_SP630-sc-2192227 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANOF01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-21 GPSC184 species_match 98.73 SAMEA2382784 4 Streptococcus pneumoniae 96.5 Streptococcus pneumoniae 1313 PRJEB4909 4 current na 195811 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1956 Streptococcus pneumoniae Streptococcus pneumoniae ERS409109 SC 2006/2012 v1.2.4 2014-07-10T08:06:45.546 98.56 1979098 96.5 1313 2003 2024-02-06T06:59:39.000 1981068 188661 1979087 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900034105.1 type blood 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 21.0166 https://www.ncbi.nlm.nih.gov/nuccore/FDGQ00000000.1 2014-07-09T17:25:44Z GCA_900034105.1 haploid public 2012019_II-sc-1870031 87.03 0.31 29 2015-08-10T19:43:35 GCA_053203845.1 786125 47 12718_4#49 2012019_II-sc-1870031 Netherlands 12718_4#49 SAMEA2382784 1313 GCF_900034105.1 Generic.1.0 87.03 SRA GCF_900034105.1 category_na live 2018-03-09T10:43:34Z 2842STDY5753326 PRJEB4909 GCF_900034105.1-RS_2025_09_28 SC SC 20 1870031 2018-03-09T10:43:34Z 2014-07-09T00:00:00.000 2012019_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDGQ01 2006/2012 2842STDY5753326 2014-07-09T17:25:44Z Prokka current 20 2012019_II-sc-1870031 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDGQ01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753326 species_match 98.78 SAMEA2382784 4 Streptococcus pneumoniae 96.5 Streptococcus pneumoniae 1313 PRJEB4909 4 current na Best-placed reference protein set; GeneMarkS-2+ 195811 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1869 Streptococcus pneumoniae Streptococcus pneumoniae ERS409109 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-10T08:06:45.546 98.56 1979098 96.5 1313 2071 2024-02-06T06:59:39.000 1981068 188661 1979087 blood Homo sapiens Streptococcus pneumoniae Disease 148 EBI 100 GCA_053203845.1 GCF_900034105.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900034105.1 type blood 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 21.0166 https://www.ncbi.nlm.nih.gov/nuccore/FDGQ00000000.1 2014-07-09T17:25:44Z GCF_900034105.1 haploid public 2012019_II-sc-1870031 87.03 0.31 29 2015-08-10T19:43:35 GCA_053203845.1 786125 54 12718_4#49 2012019_II-sc-1870031 Netherlands 12718_4#49 SAMEA2382784 1313 GCA_900034105.1 Generic.1.0 87.03 SRA GCA_900034105.1 category_na live 2018-03-09T10:43:34Z 2842STDY5753326 PRJEB4909 Annotation submitted by SC SC SC 20 1870031 2018-03-09T10:43:34Z 2014-07-09T00:00:00.000 2012019_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDGQ01 2006/2012 2842STDY5753326 6.10 2014-07-09T17:25:44Z Prokka current 20 2012019_II-sc-1870031 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDGQ01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753326 species_match 98.78 SAMEA2382922 6 Streptococcus pneumoniae 94.5 Streptococcus pneumoniae 1313 PRJEB4909 9 current na 115729 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1964 Streptococcus pneumoniae Streptococcus pneumoniae ERS409247 SC 2006/2012 v1.2.4 2014-07-10T08:06:51.810 97.1 1975483 94.5 1313 2011 2024-02-06T07:01:02.000 1977001 91069 1975481 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900031275.1 type blood 98.75 ERC000011 OK 40.0 Streptococcus pneumoniae 3.59132 https://www.ncbi.nlm.nih.gov/nuccore/FDLS00000000.1 2014-07-09T17:25:44Z GCA_900031275.1 haploid public 2071802_II-sc-1870170 85.08 0.31 47 2015-08-10T19:43:41 GCA_053203845.1 785424 47 12718_5#92 2071802_II-sc-1870170 Netherlands 12718_5#92 SAMEA2382922 1313 GCF_900031275.1 Generic.1.0 85.08 SRA GCF_900031275.1 category_na live 2018-03-09T10:43:46Z 2842STDY5753465 PRJEB4909 GCF_900031275.1-RS_2025_09_28 SC SC 36 1870170 2018-03-09T10:43:46Z 2014-07-09T00:00:00.000 2071802_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDLS01 2006/2012 2842STDY5753465 2014-07-09T17:25:44Z Prokka current 36 2071802_II-sc-1870170 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDLS01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753465 species_match 98.75 SAMEA2382922 6 Streptococcus pneumoniae 94.5 Streptococcus pneumoniae 1313 PRJEB4909 9 current na Best-placed reference protein set; GeneMarkS-2+ 115729 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1848 Streptococcus pneumoniae Streptococcus pneumoniae ERS409247 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-10T08:06:51.810 97.1 1975483 94.5 1313 2061 2024-02-06T07:01:02.000 1977001 91069 1975481 blood Homo sapiens Streptococcus pneumoniae Disease 159 EBI 100 GCA_053203845.1 GCF_900031275.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900031275.1 type blood 98.75 ERC000011 OK 40.0 Streptococcus pneumoniae 3.59132 https://www.ncbi.nlm.nih.gov/nuccore/FDLS00000000.1 2014-07-09T17:25:44Z GCF_900031275.1 haploid public 2071802_II-sc-1870170 85.08 0.31 47 2015-08-10T19:43:41 GCA_053203845.1 785424 54 12718_5#92 2071802_II-sc-1870170 Netherlands 12718_5#92 SAMEA2382922 1313 GCA_900031275.1 Generic.1.0 85.08 SRA GCA_900031275.1 category_na live 2018-03-09T10:43:46Z 2842STDY5753465 PRJEB4909 Annotation submitted by SC SC SC 36 1870170 2018-03-09T10:43:46Z 2014-07-09T00:00:00.000 2071802_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDLS01 2006/2012 2842STDY5753465 6.10 2014-07-09T17:25:44Z Prokka current 36 2071802_II-sc-1870170 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDLS01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753465 species_match 98.75 SAMEA2674618 7 Streptococcus pneumoniae 91.84 Streptococcus pneumoniae 1313 PRJEB4909 10 current na 99650 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2066 Streptococcus pneumoniae Streptococcus pneumoniae ERS515133 SC 2006/2012 v1.2.4 2015-01-29T08:41:14.196 99.31 2080421 91.84 1313 2111 2024-02-06T09:00:21.000 2083166 77092 2080420 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900018575.1 type blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FEOK00000000.1 2015-01-08T09:41:20Z GCA_900018575.1 haploid public 871016_II-sc-2019970 87.07 0.62 44 2015-08-11T21:53:54 GCA_053203845.1 823428 45 14355_8#91 871016_II-sc-2019970 Netherlands 14355_8#91 SAMEA2674618 1313 GCF_900018575.1 Generic.1.0 87.07 SRA GCF_900018575.1 category_na live 2018-03-09T11:18:16Z 2842STDY5881878 PRJEB4909 GCF_900018575.1-RS_2026_01_11 SC SC 32 2019970 2018-03-09T11:18:16Z 2015-01-08T00:00:00.000 871016_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEOK01 2006/2012 2842STDY5881878 2015-01-08T09:41:20Z Prokka current 32 871016_II-sc-2019970 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEOK01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5881878 species_match 98.79 SAMEA2674618 7 Streptococcus pneumoniae 91.84 Streptococcus pneumoniae 1313 PRJEB4909 10 current na Best-placed reference protein set; GeneMarkS-2+ 99650 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1961 Streptococcus pneumoniae Streptococcus pneumoniae ERS515133 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2015-01-29T08:41:14.196 99.31 2080421 91.84 1313 2175 2024-02-06T09:00:21.000 2083166 77092 2080420 blood Homo sapiens Streptococcus pneumoniae Disease 164 EBI 100 GCA_053203845.1 GCF_900018575.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900018575.1 type blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FEOK00000000.1 2015-01-08T09:41:20Z GCF_900018575.1 haploid public 871016_II-sc-2019970 87.07 0.62 44 2015-08-11T21:53:54 GCA_053203845.1 823428 50 14355_8#91 871016_II-sc-2019970 Netherlands 14355_8#91 SAMEA2674618 1313 GCA_900018575.1 Generic.1.0 87.07 SRA GCA_900018575.1 category_na live 2018-03-09T11:18:16Z 2842STDY5881878 PRJEB4909 Annotation submitted by SC SC SC 32 2019970 2018-03-09T11:18:16Z 2015-01-08T00:00:00.000 871016_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEOK01 2006/2012 2842STDY5881878 6.10 2015-01-08T09:41:20Z Prokka current 32 871016_II-sc-2019970 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEOK01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5881878 species_match 98.79 SAMEA2238455 7 Streptococcus pneumoniae 94.65 Streptococcus pneumoniae 1313 PRJEB4909 10 current na 108588 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1953 Streptococcus pneumoniae Streptococcus pneumoniae ERS367267 SC 2006/2012 v1.2.4 2014-05-07T08:34:29.340 97.1 1971994 94.65 1313 1993 2024-02-06T05:01:35.000 1976178 73831 1971993 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900030485.1 type CSF 98.76 ERC000011 OK 40.0 Streptococcus pneumoniae 3.59132 https://www.ncbi.nlm.nih.gov/nuccore/FDZL00000000.1 2014-03-18T09:35:30Z GCA_900030485.1 haploid public 2071802-sc-2013-11-05T11:56:46Z-1749814 85.06 0.31 52 2015-08-10T19:24:13 GCA_053203845.1 784079 40 11860_5#85 2071802-sc-2013-11-05T11:56:46Z-1749814 Netherlands 11860_5#85 SAMEA2238455 1313 GCF_900030485.1 Generic.1.0 85.06 SRA GCF_900030485.1 category_na live 2018-03-09T10:27:29Z 2842STDY5643825 PRJEB4909 GCF_900030485.1-RS_2025_09_28 SC SC 35 1749814 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2071802 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDZL01 2006/2012 2842STDY5643825 2014-03-18T09:35:30Z Prokka current 35 2071802-sc-2013-11-05T11:56:46Z-1749814 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDZL01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643825 species_match 98.76 SAMEA2238455 7 Streptococcus pneumoniae 94.65 Streptococcus pneumoniae 1313 PRJEB4909 10 current na Best-placed reference protein set; GeneMarkS-2+ 108588 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1848 Streptococcus pneumoniae Streptococcus pneumoniae ERS367267 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:29.340 97.1 1971994 94.65 1313 2051 2024-02-06T05:01:35.000 1976178 73831 1971993 CSF Homo sapiens Streptococcus pneumoniae Disease 156 EBI 100 GCA_053203845.1 GCF_900030485.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900030485.1 type CSF 98.76 ERC000011 OK 40.0 Streptococcus pneumoniae 3.59132 https://www.ncbi.nlm.nih.gov/nuccore/FDZL00000000.1 2014-03-18T09:35:30Z GCF_900030485.1 haploid public 2071802-sc-2013-11-05T11:56:46Z-1749814 85.06 0.31 52 2015-08-10T19:24:13 GCA_053203845.1 784079 47 11860_5#85 2071802-sc-2013-11-05T11:56:46Z-1749814 Netherlands 11860_5#85 SAMEA2238455 1313 GCA_900030485.1 Generic.1.0 85.06 SRA GCA_900030485.1 category_na live 2018-03-09T10:27:29Z 2842STDY5643825 PRJEB4909 Annotation submitted by SC SC SC 35 1749814 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2071802 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDZL01 2006/2012 2842STDY5643825 6.10 2014-03-18T09:35:30Z Prokka current 35 2071802-sc-2013-11-05T11:56:46Z-1749814 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDZL01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643825 species_match 98.76 SAMEA1028733 9 Streptococcus pneumoniae 89.51 Streptococcus pneumoniae 1313 PRJEB2479 10 current na 76201 type Streptococcus pneumoniae 2015-07-13 21 21 species Homo sapiens 2112 Streptococcus pneumoniae Streptococcus pneumoniae ERS021919 SC 2010-02-09 v1.2.4 2012-01-20T20:09:48.136 99.1 2128897 89.51 1313 2151 2024-02-06T09:04:56.000 2128951 72801 2128866 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001124645.1 type nasopharynx 98.78 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CLNV00000000.1 2012-01-05T09:56:35Z GCA_001124645.1 haploid public SMRU2410-sc-2011-01-27-1062623 86.84 1.04 76 2015-07-28T08:12:32 GCA_053203845.1 840790 39 6949_1#10 SMRU2410-sc-2011-01-27-1062623 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028733 1313 GCF_001124645.1 Generic.1.0 86.84 SRA GCF_001124645.1 category_na live 2018-03-09T12:27:17Z SMRU2410 PRJEB2479 GCF_001124645.1-RS_2026_01_31 SC SC 72 2018-03-09T12:27:17Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLNV01 2010-02-09 SMRU2410 2012-01-05T09:56:35Z Prokka current 72 SMRU2410-sc-2011-01-27-1062623 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLNV01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2410 species_match 98.78 SAMEA1028733 9 Streptococcus pneumoniae 89.51 Streptococcus pneumoniae 1313 PRJEB2479 10 current na Best-placed reference protein set; GeneMarkS-2+ 76201 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 21 21 species Homo sapiens 2026 Streptococcus pneumoniae Streptococcus pneumoniae ERS021919 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-02-09 v1.2.4 2012-01-20T20:09:48.136 99.1 2128897 89.51 1313 2255 2024-02-06T09:04:56.000 2128951 72801 2128866 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 189 EBI 100 GCA_053203845.1 GCF_001124645.1-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_001124645.1 type nasopharynx 98.78 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CLNV00000000.1 2012-01-05T09:56:35Z GCF_001124645.1 haploid public SMRU2410-sc-2011-01-27-1062623 86.84 1.04 76 2015-07-28T08:12:32 GCA_053203845.1 840790 40 6949_1#10 SMRU2410-sc-2011-01-27-1062623 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028733 1313 GCA_001124645.1 Generic.1.0 86.84 SRA GCA_001124645.1 category_na live 2018-03-09T12:27:17Z SMRU2410 PRJEB2479 Annotation submitted by SC SC SC 72 2018-03-09T12:27:17Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLNV01 2010-02-09 SMRU2410 6.10 2012-01-05T09:56:35Z Prokka current 72 SMRU2410-sc-2011-01-27-1062623 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLNV01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2410 species_match 98.78 SAMEA2383007 5 Streptococcus pneumoniae 93.05 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 130718 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2005 Streptococcus pneumoniae Streptococcus pneumoniae ERS409332 SC 2006/2012 v1.2.4 2014-07-17T08:09:27.513 99.31 2044213 93.05 1313 2051 2024-02-06T06:49:42.000 2047085 70072 2044209 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900026655.1 type blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FDOS00000000.1 2014-07-16T11:40:13Z GCA_900026655.1 haploid public 2082239_II-sc-1870256 86.69 0.62 49 2015-08-10T19:44:13 GCA_053203845.1 809382 46 12754_1#82 2082239_II-sc-1870256 Netherlands 12754_1#82 SAMEA2383007 1313 GCF_900026655.1 Generic.1.0 86.69 SRA GCF_900026655.1 category_na live 2018-03-09T10:42:06Z 2842STDY5753551 PRJEB4909 GCF_900026655.1-RS_2025_12_21 SC SC 37 1870256 2018-03-09T10:42:06Z 2014-07-16T00:00:00.000 2082239_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDOS01 2006/2012 2842STDY5753551 2014-07-16T11:40:13Z Prokka current 37 2082239_II-sc-1870256 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDOS01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753551 species_match 98.8 SAMEA2383007 5 Streptococcus pneumoniae 93.05 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 130718 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-21 species Homo sapiens 1908 Streptococcus pneumoniae Streptococcus pneumoniae ERS409332 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:27.513 99.31 2044213 93.05 1313 2116 2024-02-06T06:49:42.000 2047085 70072 2044209 blood Homo sapiens Streptococcus pneumoniae Disease 156 EBI 100 GCA_053203845.1 GCF_900026655.1-RS_2025_12_21 SLX Streptococcus pneumoniae GCF_900026655.1 type blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FDOS00000000.1 2014-07-16T11:40:13Z GCF_900026655.1 haploid public 2082239_II-sc-1870256 86.69 0.62 49 2015-08-10T19:44:13 GCA_053203845.1 809382 52 12754_1#82 2082239_II-sc-1870256 Netherlands 12754_1#82 SAMEA2383007 1313 GCA_900026655.1 Generic.1.0 86.69 SRA GCA_900026655.1 category_na live 2018-03-09T10:42:06Z 2842STDY5753551 PRJEB4909 Annotation submitted by SC SC SC 37 1870256 2018-03-09T10:42:06Z 2014-07-16T00:00:00.000 2082239_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDOS01 2006/2012 2842STDY5753551 6.10 2014-07-16T11:40:13Z Prokka current 37 2082239_II-sc-1870256 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDOS01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753551 species_match 98.8 SAMEA2674617 7 Streptococcus pneumoniae 91.85 Streptococcus pneumoniae 1313 PRJEB4909 10 current na 119746 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2068 Streptococcus pneumoniae Streptococcus pneumoniae ERS515132 SC 2006/2012 v1.2.4 2015-01-29T08:41:14.136 98.58 2080487 91.85 1313 2113 2024-02-06T09:01:22.000 2083981 69956 2080477 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900030605.1 type CSF 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 21.5543 https://www.ncbi.nlm.nih.gov/nuccore/FCZB00000000.1 2015-01-08T09:41:19Z GCA_900030605.1 haploid public 871016_I-sc-2019969 87.08 0.78 47 2015-08-11T21:53:54 GCA_053203845.1 823441 45 14355_8#90 871016_I-sc-2019969 Netherlands 14355_8#90 SAMEA2674617 1313 GCF_900030605.1 Generic.1.0 87.08 SRA GCF_900030605.1 category_na live 2018-03-09T11:31:33Z 2842STDY5881877 PRJEB4909 GCF_900030605.1-RS_2025_09_21 SC SC 33 2019969 2018-03-09T11:31:33Z 2015-01-08T00:00:00.000 871016_I https://www.ncbi.nlm.nih.gov/Traces/wgs/FCZB01 2006/2012 2842STDY5881877 2015-01-08T09:41:19Z Prokka current 33 871016_I-sc-2019969 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCZB01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5881877 species_match 98.79 SAMEA2674617 7 Streptococcus pneumoniae 91.85 Streptococcus pneumoniae 1313 PRJEB4909 10 current na Best-placed reference protein set; GeneMarkS-2+ 119746 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1955 Streptococcus pneumoniae Streptococcus pneumoniae ERS515132 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2015-01-29T08:41:14.136 98.58 2080487 91.85 1313 2175 2024-02-06T09:01:22.000 2083981 69956 2080477 CSF Homo sapiens Streptococcus pneumoniae Disease 169 EBI 100 GCA_053203845.1 GCF_900030605.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900030605.1 type CSF 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 21.5543 https://www.ncbi.nlm.nih.gov/nuccore/FCZB00000000.1 2015-01-08T09:41:19Z GCF_900030605.1 haploid public 871016_I-sc-2019969 87.08 0.78 47 2015-08-11T21:53:54 GCA_053203845.1 823441 51 14355_8#90 871016_I-sc-2019969 Netherlands 14355_8#90 SAMEA2674617 1313 GCA_900030605.1 Generic.1.0 87.08 SRA GCA_900030605.1 category_na live 2018-03-09T11:31:33Z 2842STDY5881877 PRJEB4909 Annotation submitted by SC SC SC 33 2019969 2018-03-09T11:31:33Z 2015-01-08T00:00:00.000 871016_I https://www.ncbi.nlm.nih.gov/Traces/wgs/FCZB01 2006/2012 2842STDY5881877 6.10 2015-01-08T09:41:19Z Prokka current 33 871016_I-sc-2019969 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCZB01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5881877 species_match 98.79 SAMEA1463073 10 Streptococcus pneumoniae 91.46 Streptococcus pneumoniae 1313 PRJEB2632 10 current na 67367 type Streptococcus pneumoniae 2015-07-29 21 21 species Homo sapiens 2042 Streptococcus pneumoniae Streptococcus pneumoniae ERS070001 SC 2007 v1.2.4 2012-06-06T09:06:35.156 99.15 2112871 91.46 1313 2073 2024-02-05T18:12:11.000 VODW3 2112871 67367 2112871 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001129905.2 type nasopharynx 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/COCU00000000.2 2012-05-28T10:19:32Z GCA_001129905.2 haploid public GL3031-sc-2011-11-08T10:07:25Z-1298369 88.06 0.62 138 2015-09-10T08:20:48 VODW3 GCA_053203845.1 833754 31 7622_3#86 GL3031-sc-2011-11-08T10:07:25Z-1298369 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463073 1313 GCF_001129905.1 Generic.1.0 88.06 SRA GCF_001129905.1 category_na live 2018-03-09T09:54:37Z GL3031 PRJEB2632 GCF_001129905.1-RS_2025_09_15 SC SC 138 VODW3 2018-03-09T09:54:37Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COCU02 2007 GL3031 2012-05-28T10:19:32Z Velvet current 138 GL3031-sc-2011-11-08T10:07:25Z-1298369 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COCU02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 GL3031 species_match 98.8 SAMEA1463073 10 Streptococcus pneumoniae 91.46 Streptococcus pneumoniae 1313 PRJEB2632 10 current na Best-placed reference protein set; GeneMarkS-2+ 67367 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-15 21 21 species Homo sapiens 1983 Streptococcus pneumoniae Streptococcus pneumoniae ERS070001 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:35.156 99.15 2112871 91.46 1313 2208 2024-02-05T18:12:11.000 VODW3 2112871 67367 2112871 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 175 EBI 100 GCA_053203845.1 GCF_001129905.1-RS_2025_09_15 SLX Streptococcus pneumoniae GCF_001129905.1 type nasopharynx 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/COCU00000000.2 2012-05-28T10:19:32Z GCF_001129905.1 haploid public GL3031-sc-2011-11-08T10:07:25Z-1298369 88.06 0.62 138 2015-09-10T08:20:48 VODW3 GCA_053203845.1 833754 50 7622_3#86 GL3031-sc-2011-11-08T10:07:25Z-1298369 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463073 1313 GCA_001129905.2 Generic.1.0 88.06 SRA GCA_001129905.2 category_na live 2018-03-09T09:54:37Z GL3031 PRJEB2632 Annotation submitted by SC SC SC 138 VODW3 2018-03-09T09:54:37Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COCU02 2007 GL3031 6.10 2012-05-28T10:19:32Z Velvet current 138 GL3031-sc-2011-11-08T10:07:25Z-1298369 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COCU02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 GL3031 species_match 98.8 SAMEA1025635 13 Streptococcus pneumoniae 90.49 Streptococcus pneumoniae 1313 PRJEB2395 13 current na 54457 type Streptococcus pneumoniae 2015-07-27 21 21 species Homo sapiens 2104 Streptococcus pneumoniae Streptococcus pneumoniae ERS021059 SC 2009-04-21 v1.2.4 2012-01-20T19:59:32.793 99.1 2139595 90.49 1313 2141 2024-02-05T16:20:05.000 2139595 54457 2139574 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001342835.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CICA00000000.1 2011-11-15T09:28:17Z GCA_001342835.1 haploid public SMRU1549-sc-2011-01-27-1061762 88.23 1.35 76 2015-07-28T08:11:46 GCA_053203845.1 845624 37 6753_4#13 SMRU1549-sc-2011-01-27-1061762 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025635 1313 GCF_001342835.1 Generic.1.0 88.23 SRA GCF_001342835.1 category_na live 2018-03-09T09:52:56Z SMRU1549 PRJEB2395 GCF_001342835.1-RS_2026_01_24 SC SC 76 2018-03-09T09:52:56Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CICA01 2009-04-21 SMRU1549 2011-11-15T09:28:17Z Prokka current 76 SMRU1549-sc-2011-01-27-1061762 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CICA01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU1549 species_match 98.74 SAMEA1025635 13 Streptococcus pneumoniae 90.49 Streptococcus pneumoniae 1313 PRJEB2395 13 current na Best-placed reference protein set; GeneMarkS-2+ 54457 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 21 21 species Homo sapiens 2035 Streptococcus pneumoniae Streptococcus pneumoniae ERS021059 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-21 v1.2.4 2012-01-20T19:59:32.793 99.1 2139595 90.49 1313 2250 2024-02-05T16:20:05.000 2139595 54457 2139574 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 176 EBI 100 GCA_053203845.1 GCF_001342835.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_001342835.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CICA00000000.1 2011-11-15T09:28:17Z GCF_001342835.1 haploid public SMRU1549-sc-2011-01-27-1061762 88.23 1.35 76 2015-07-28T08:11:46 GCA_053203845.1 845624 39 6753_4#13 SMRU1549-sc-2011-01-27-1061762 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025635 1313 GCA_001342835.1 Generic.1.0 88.23 SRA GCA_001342835.1 category_na live 2018-03-09T09:52:56Z SMRU1549 PRJEB2395 Annotation submitted by SC SC SC 76 2018-03-09T09:52:56Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CICA01 2009-04-21 SMRU1549 6.10 2011-11-15T09:28:17Z Prokka current 76 SMRU1549-sc-2011-01-27-1061762 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CICA01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU1549 species_match 98.74 SAMEA104035380 4 Streptococcus pneumoniae 93.18 Streptococcus pneumoniae PRJEB3084 4 na 214034 type Streptococcus pneumoniae 2019-05-12 27 27 Homo sapiens 2052 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699273 SC 2012 2017-08-10T16:09:54.690 2046472 93.18 1313 2103 Streptococcus pneumoniae 2024-02-06T15:52:10.000 2046496 2245STDY6835453 214034 2046466 blood Homo sapiens IPD from large multi-isolate project ST1475 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901287755.1 type Streptococcus pneumoniae blood 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAVQU000000000.1 2017-08-08T13:54:44Z GCA_901287755.1 haploid public 99e49870-1f66-11e7-b93e-3c4a9275d6c8 86.9 30 2017-08-10T17:09:51.460 GCA_053203845.1 812830 51 22841_4#74 99e49870-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_4#74 SAMEA104035380 1313 Generic.1.0 86.9 SRA category_na live 2019-04-18T15:32:27Z GPSC226 PRJEB3084 SC SC 29 3052128 2019-04-18T15:32:27Z 2017-08-08T00:00:00.000 26103 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAVQU01 2012 GPSC226 substr. ST1475 2017-08-08T13:54:44Z Prokka current 29 99e49870-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAVQU01 Scaffold SOURCE_DATABASE_GENBANK Israel 2019-05-12 GPSC226 species_match 98.74 SAMEA3389238 4 Streptococcus pneumoniae 91.23 Streptococcus pneumoniae PRJEB3084 4 na 202491 type Streptococcus pneumoniae 2019-05-22 21 21 Homo sapiens 2194 Streptococcus pneumoniae Streptococcus pneumoniae ERS725341 SC 2014 2016-02-24T08:10:03.336 2181626 91.23 1313 2246 Streptococcus pneumoniae 2024-02-06T15:53:09.000 2181626 202491 2181626 NP swab Homo sapiens carriage from large multi-isolate project ST11735 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901330155.1 type NP swab 98.68 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABBWU000000000.1 2016-02-23T15:24:50Z GCA_901330155.1 haploid public GPS_MW_150041-sc-2295711 90.7 30 2018-03-10T20:16:05 GCA_053203845.1 863309 52 18456_1#35 GPS_MW_150041-sc-2295711 Malawi 18456_1#35 SAMEA3389238 1313 Generic.1.0 90.7 SRA category_na live 2019-04-18T15:32:42Z GPSC71 PRJEB3084 SC SC 30 2295711 2019-04-18T15:32:42Z 2016-02-23T00:00:00.000 GPS_MW_150041 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABBWU01 2014 GPSC71 substr. ST11735 2016-02-23T15:24:50Z Prokka current 30 GPS_MW_150041-sc-2295711 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABBWU01 Contig SOURCE_DATABASE_GENBANK Malawi 2019-05-22 GPSC71 species_match 98.68 SAMEA1026465 10 Streptococcus pneumoniae 91.41 Streptococcus pneumoniae 1313 PRJEB2417 10 current na 81124 type Streptococcus pneumoniae 2017-06-28 21 21 species Homo sapiens 2051 Streptococcus pneumoniae ERS025142 SC 2010-12-17 v1.2.4 2011-09-29T19:48:44.540 97.11 2102366 91.41 1313 2101 2017-06-24T15:58:24.000 2102491 81124 2102340 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900193135.1 type Nasophaynx 98.77 OK 39.5 Streptococcus pneumoniae 3.61693 https://www.ncbi.nlm.nih.gov/nuccore/FYWM00000000.1 2011-09-27 GCA_900193135.1 haploid ERS025142 87.58 0.69 61 2017-06-28T08:06:28 GCA_053203845.1 829919 50 6569_8#15 United Kingdom UoS5089-sc-2011-03-11-1098952; 6569_815 1313 GCF_900193135.1 Generic.1.0 87.58 SRA Sample Description GCF_900193135.1 category_na live 2017-06-22 UoS5089 PRJEB2417 GCF_900193135.1-RS_2025_09_04 SC 58 1098952 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYWM01 2010-12-17 UoS5089 Prokka current 58 ERS025142 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYWM01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-28 UoS5089 species_match 98.77 SAMEA1026465 10 Streptococcus pneumoniae 91.41 Streptococcus pneumoniae 1313 PRJEB2417 10 current na Best-placed reference protein set; GeneMarkS-2+ 81124 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 21 21 species Homo sapiens 1925 Streptococcus pneumoniae ERS025142 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-12-17 v1.2.4 2011-09-29T19:48:44.540 97.11 2102366 91.41 1313 2168 2017-06-24T15:58:24.000 2102491 81124 2102340 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 195 EBI 100 GCA_053203845.1 GCF_900193135.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900193135.1 type Nasophaynx 98.77 OK 39.5 Streptococcus pneumoniae 3.61693 https://www.ncbi.nlm.nih.gov/nuccore/FYWM00000000.1 2011-09-27 GCF_900193135.1 haploid ERS025142 87.58 0.69 61 2017-06-28T08:06:28 GCA_053203845.1 829919 48 6569_8#15 United Kingdom UoS5089-sc-2011-03-11-1098952; 6569_815 1313 GCA_900193135.1 Generic.1.0 87.58 SRA Sample Description GCA_900193135.1 category_na live 2017-06-22 UoS5089 PRJEB2417 Annotation submitted by SC SC 58 1098952 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYWM01 2010-12-17 UoS5089 6.10 Prokka current 58 ERS025142 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYWM01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-28 UoS5089 species_match 98.77 SAMEA1025531 10 Streptococcus pneumoniae 90.05 Streptococcus pneumoniae 1313 PRJEB2395 10 current na 71875 type Streptococcus pneumoniae 2015-07-18 21 21 species Homo sapiens 2101 Streptococcus pneumoniae Streptococcus pneumoniae ERS020809 SC 2009-02-27 v1.2.4 2012-01-20T19:56:47.243 99.05 2145924 90.05 1313 2143 2024-02-06T09:04:20.000 2145954 71875 2145885 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001163825.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 51.1363 https://www.ncbi.nlm.nih.gov/nuccore/CRIH00000000.1 2011-11-15T09:28:15Z GCA_001163825.1 haploid public SMRU1299-sc-2011-01-27-1061512 88.06 0.62 82 2015-07-28T08:11:35 GCA_053203845.1 847779 42 6736_8#3 SMRU1299-sc-2011-01-27-1061512 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025531 1313 GCF_001163825.1 Generic.1.0 88.06 SRA GCF_001163825.1 category_na live 2018-03-09T12:11:59Z SMRU1299 PRJEB2395 GCF_001163825.1-RS_2026_01_22 SC SC 81 2018-03-09T12:11:59Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRIH01 2009-02-27 SMRU1299 2011-11-15T09:28:15Z Prokka current 81 SMRU1299-sc-2011-01-27-1061512 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRIH01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1299 species_match 98.73 SAMEA1025531 10 Streptococcus pneumoniae 90.05 Streptococcus pneumoniae 1313 PRJEB2395 10 current na Best-placed reference protein set; GeneMarkS-2+ 71875 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 21 21 species Homo sapiens 2032 Streptococcus pneumoniae Streptococcus pneumoniae ERS020809 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-02-27 v1.2.4 2012-01-20T19:56:47.243 99.05 2145924 90.05 1313 2247 2024-02-06T09:04:20.000 2145954 71875 2145885 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 171 EBI 100 GCA_053203845.1 GCF_001163825.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_001163825.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 51.1363 https://www.ncbi.nlm.nih.gov/nuccore/CRIH00000000.1 2011-11-15T09:28:15Z GCF_001163825.1 haploid public SMRU1299-sc-2011-01-27-1061512 88.06 0.62 82 2015-07-28T08:11:35 GCA_053203845.1 847779 44 6736_8#3 SMRU1299-sc-2011-01-27-1061512 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025531 1313 GCA_001163825.1 Generic.1.0 88.06 SRA GCA_001163825.1 category_na live 2018-03-09T12:11:59Z SMRU1299 PRJEB2395 Annotation submitted by SC SC SC 81 2018-03-09T12:11:59Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRIH01 2009-02-27 SMRU1299 6.10 2011-11-15T09:28:15Z Prokka current 81 SMRU1299-sc-2011-01-27-1061512 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRIH01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1299 species_match 98.73 SAMEA1026407 10 Streptococcus pneumoniae 91.81 Streptococcus pneumoniae 1313 PRJEB2417 11 current na 72280 type Streptococcus pneumoniae 2017-06-28 21 21 species Homo sapiens 2056 Streptococcus pneumoniae ERS023330 SC 2009-11-17 v1.2.4 2011-09-23T19:14:14.226 98.76 2107029 91.81 1313 2104 2017-06-24T15:47:51.000 2107044 67855 2107026 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900191815.1 type Nasophaynx 98.81 OK 39.5 Streptococcus pneumoniae 30.6767 https://www.ncbi.nlm.nih.gov/nuccore/FYRK00000000.1 2011-09-20 GCA_900191815.1 haploid ERS023330 88.16 0.62 54 2017-06-28T08:06:23 GCA_053203845.1 830479 48 6512_5#12 United Kingdom UoS4039-sc-2011-02-14-1078384; 6512_512 1313 GCF_900191815.1 Generic.1.0 88.16 SRA Sample Description GCF_900191815.1 category_na live 2017-06-22 UoS4039 PRJEB2417 GCF_900191815.1-RS_2025_09_02 SC 53 1078384 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYRK01 2009-11-17 UoS4039 Prokka current 53 ERS023330 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYRK01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-28 UoS4039 species_match 98.81 SAMEA1026407 10 Streptococcus pneumoniae 91.81 Streptococcus pneumoniae 1313 PRJEB2417 11 current na Best-placed reference protein set; GeneMarkS-2+ 72280 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-02 21 21 species Homo sapiens 1940 Streptococcus pneumoniae ERS023330 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-11-17 v1.2.4 2011-09-23T19:14:14.226 98.76 2107029 91.81 1313 2170 2017-06-24T15:47:51.000 2107044 67855 2107026 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 181 EBI 100 GCA_053203845.1 GCF_900191815.1-RS_2025_09_02 SLX Streptococcus pneumoniae GCF_900191815.1 type Nasophaynx 98.81 OK 39.5 Streptococcus pneumoniae 30.6767 https://www.ncbi.nlm.nih.gov/nuccore/FYRK00000000.1 2011-09-20 GCF_900191815.1 haploid ERS023330 88.16 0.62 54 2017-06-28T08:06:23 GCA_053203845.1 830479 49 6512_5#12 United Kingdom UoS4039-sc-2011-02-14-1078384; 6512_512 1313 GCA_900191815.1 Generic.1.0 88.16 SRA Sample Description GCA_900191815.1 category_na live 2017-06-22 UoS4039 PRJEB2417 Annotation submitted by SC SC 53 1078384 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYRK01 2009-11-17 UoS4039 6.10 Prokka current 53 ERS023330 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYRK01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-28 UoS4039 species_match 98.81 SAMEA1029353 11 Streptococcus pneumoniae 88.07 Streptococcus pneumoniae 1313 PRJEB2480 11 current na 63858 type Streptococcus pneumoniae 2015-07-14 21 21 species Homo sapiens 2098 Streptococcus pneumoniae Streptococcus pneumoniae ERS022654 SC 2009-08-11 v1.2.4 2012-02-09T20:50:00.753 99.1 2131741 88.07 1313 2139 2024-02-06T09:04:30.000 2131741 63858 2131719 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001095365.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CMMT00000000.1 2012-02-07T17:03:03Z GCA_001095365.1 haploid public SMRU3144-sc-2011-01-27-1063357 88.93 0.62 68 2015-07-28T08:13:21 GCA_001457635.1 842510 41 7068_4#24 SMRU3144-sc-2011-01-27-1063357 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029353 1313 GCF_001095365.1 Generic.1.0 88.93 SRA GCF_001095365.1 category_na live 2018-03-09T12:15:20Z SMRU3144 PRJEB2480 GCF_001095365.1-RS_2026_01_20 SC SC 68 2018-03-09T12:15:20Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMMT01 2009-08-11 SMRU3144 2012-02-07T17:03:03Z Prokka current 68 SMRU3144-sc-2011-01-27-1063357 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMMT01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU3144 species_match 98.71 SAMEA1029353 11 Streptococcus pneumoniae 88.07 Streptococcus pneumoniae 1313 PRJEB2480 11 current na Best-placed reference protein set; GeneMarkS-2+ 63858 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-20 21 21 species Homo sapiens 2030 Streptococcus pneumoniae Streptococcus pneumoniae ERS022654 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-08-11 v1.2.4 2012-02-09T20:50:00.753 99.1 2131741 88.07 1313 2241 2024-02-06T09:04:30.000 2131741 63858 2131719 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 168 EBI 100 GCA_001457635.1 GCF_001095365.1-RS_2026_01_20 SLX Streptococcus pneumoniae GCF_001095365.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CMMT00000000.1 2012-02-07T17:03:03Z GCF_001095365.1 haploid public SMRU3144-sc-2011-01-27-1063357 88.93 0.62 68 2015-07-28T08:13:21 GCA_001457635.1 842510 43 7068_4#24 SMRU3144-sc-2011-01-27-1063357 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029353 1313 GCA_001095365.1 Generic.1.0 88.93 SRA GCA_001095365.1 category_na live 2018-03-09T12:15:20Z SMRU3144 PRJEB2480 Annotation submitted by SC SC SC 68 2018-03-09T12:15:20Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMMT01 2009-08-11 SMRU3144 6.10 2012-02-07T17:03:03Z Prokka current 68 SMRU3144-sc-2011-01-27-1063357 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMMT01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU3144 species_match 98.71 SAMEA1025765 14 Streptococcus pneumoniae 90.71 Streptococcus pneumoniae 1313 PRJEB2397 14 current na 54616 type Streptococcus pneumoniae 2015-07-18 21 21 species Homo sapiens 2106 Streptococcus pneumoniae Streptococcus pneumoniae ERS021254 SC 2009-07-17 v1.2.4 2012-01-20T20:01:40.973 99.1 2139918 90.71 1313 2146 2024-02-06T09:04:25.000 2139940 54616 2139909 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001161285.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CRVN00000000.1 2011-11-29T12:03:47Z GCA_001161285.1 haploid public SMRU1744-sc-2011-01-27-1061957 88.46 0.78 74 2015-07-28T08:11:59 GCA_053203845.1 845519 40 6805_7#15 SMRU1744-sc-2011-01-27-1061957 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025765 1313 GCF_001161285.1 Generic.1.0 88.46 SRA GCF_001161285.1 category_na live 2018-03-09T12:13:32Z SMRU1744 PRJEB2397 GCF_001161285.1-RS_2026_01_30 SC SC 72 2018-03-09T12:13:32Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRVN01 2009-07-17 SMRU1744 2011-11-29T12:03:47Z Prokka current 72 SMRU1744-sc-2011-01-27-1061957 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRVN01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1744 species_match 98.73 SAMEA1025765 14 Streptococcus pneumoniae 90.71 Streptococcus pneumoniae 1313 PRJEB2397 14 current na Best-placed reference protein set; GeneMarkS-2+ 54616 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-30 21 21 species Homo sapiens 2031 Streptococcus pneumoniae Streptococcus pneumoniae ERS021254 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-07-17 v1.2.4 2012-01-20T20:01:40.973 99.1 2139918 90.71 1313 2257 2024-02-06T09:04:25.000 2139940 54616 2139909 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 184 EBI 100 GCA_053203845.1 GCF_001161285.1-RS_2026_01_30 SLX Streptococcus pneumoniae GCF_001161285.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CRVN00000000.1 2011-11-29T12:03:47Z GCF_001161285.1 haploid public SMRU1744-sc-2011-01-27-1061957 88.46 0.78 74 2015-07-28T08:11:59 GCA_053203845.1 845519 42 6805_7#15 SMRU1744-sc-2011-01-27-1061957 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025765 1313 GCA_001161285.1 Generic.1.0 88.46 SRA GCA_001161285.1 category_na live 2018-03-09T12:13:32Z SMRU1744 PRJEB2397 Annotation submitted by SC SC SC 72 2018-03-09T12:13:32Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRVN01 2009-07-17 SMRU1744 6.10 2011-11-29T12:03:47Z Prokka current 72 SMRU1744-sc-2011-01-27-1061957 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRVN01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1744 species_match 98.73 SAMEA1028844 11 Streptococcus pneumoniae 86.61 Streptococcus pneumoniae 1313 PRJEB2479 11 current na 54319 type Streptococcus pneumoniae 2015-07-24 21 21 species Homo sapiens 2123 Streptococcus pneumoniae Streptococcus pneumoniae ERS022072 SC 2010-02-22 v1.2.4 2012-01-20T20:11:16.640 99.1 2162872 86.61 1313 2162 2024-02-06T09:02:50.000 2162872 54319 2162860 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001346015.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CGZL00000000.1 2012-01-16T15:10:27Z GCA_001346015.1 haploid public SMRU2562-sc-2011-01-27-1062775 88.74 1.77 72 2015-07-28T08:12:52 GCA_001457635.1 855013 39 6972_2#18 SMRU2562-sc-2011-01-27-1062775 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028844 1313 GCF_001346015.1 Generic.1.0 88.74 SRA GCF_001346015.1 category_na live 2018-03-09T11:49:04Z SMRU2562 PRJEB2479 GCF_001346015.1-RS_2026_01_07 SC SC 72 2018-03-09T11:49:04Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CGZL01 2010-02-22 SMRU2562 2012-01-16T15:10:27Z Prokka current 72 SMRU2562-sc-2011-01-27-1062775 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CGZL01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU2562 species_match 98.71 SAMEA1028844 11 Streptococcus pneumoniae 86.61 Streptococcus pneumoniae 1313 PRJEB2479 11 current na Best-placed reference protein set; GeneMarkS-2+ 54319 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-07 21 21 species Homo sapiens 2071 Streptococcus pneumoniae Streptococcus pneumoniae ERS022072 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-02-22 v1.2.4 2012-01-20T20:11:16.640 99.1 2162872 86.61 1313 2264 2024-02-06T09:02:50.000 2162872 54319 2162860 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 151 EBI 100 GCA_001457635.1 GCF_001346015.1-RS_2026_01_07 SLX Streptococcus pneumoniae GCF_001346015.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CGZL00000000.1 2012-01-16T15:10:27Z GCF_001346015.1 haploid public SMRU2562-sc-2011-01-27-1062775 88.74 1.77 72 2015-07-28T08:12:52 GCA_001457635.1 855013 42 6972_2#18 SMRU2562-sc-2011-01-27-1062775 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028844 1313 GCA_001346015.1 Generic.1.0 88.74 SRA GCA_001346015.1 category_na live 2018-03-09T11:49:04Z SMRU2562 PRJEB2479 Annotation submitted by SC SC SC 72 2018-03-09T11:49:04Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CGZL01 2010-02-22 SMRU2562 6.10 2012-01-16T15:10:27Z Prokka current 72 SMRU2562-sc-2011-01-27-1062775 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CGZL01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU2562 species_match 98.71 SAMEA1023770 13 Streptococcus pneumoniae 90.9 Streptococcus pneumoniae 1313 PRJEB2357 13 current na 51525 type Streptococcus pneumoniae 2015-07-11 21 21 species Homo sapiens 2111 Streptococcus pneumoniae Streptococcus pneumoniae ERS019625 SC 2008-06-18 v1.2.4 2012-01-20T19:46:15.063 99.1 2148015 90.9 1313 2153 2024-02-06T09:03:50.000 2148039 51525 2147992 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001157285.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CKJD00000000.1 2011-10-11T09:20:04Z GCA_001157285.1 haploid public SMRU467-sc-2011-01-27-1060656 88.98 0.62 84 2016-01-29T08:05:24 GCA_053203845.1 848463 42 6631_5#11 SMRU467-sc-2011-01-27-1060656 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023770 1313 GCF_001157285.1 Generic.1.0 88.98 SRA GCF_001157285.1 category_na live 2018-03-09T12:03:35Z SMRU467 PRJEB2357 GCF_001157285.1-RS_2026_01_22 SC SC 83 2018-03-09T12:03:35Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKJD01 2008-06-18 21 2011-10-11T09:20:04Z Prokka current 83 SMRU467-sc-2011-01-27-1060656 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKJD01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU467 species_match 98.76 SAMEA1023770 13 Streptococcus pneumoniae 90.9 Streptococcus pneumoniae 1313 PRJEB2357 13 current na Best-placed reference protein set; GeneMarkS-2+ 51525 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 21 21 species Homo sapiens 2036 Streptococcus pneumoniae Streptococcus pneumoniae ERS019625 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-06-18 v1.2.4 2012-01-20T19:46:15.063 99.1 2148015 90.9 1313 2255 2024-02-06T09:03:50.000 2148039 51525 2147992 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 173 EBI 100 GCA_053203845.1 GCF_001157285.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_001157285.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CKJD00000000.1 2011-10-11T09:20:04Z GCF_001157285.1 haploid public SMRU467-sc-2011-01-27-1060656 88.98 0.62 84 2016-01-29T08:05:24 GCA_053203845.1 848463 46 6631_5#11 SMRU467-sc-2011-01-27-1060656 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023770 1313 GCA_001157285.1 Generic.1.0 88.98 SRA GCA_001157285.1 category_na live 2018-03-09T12:03:35Z SMRU467 PRJEB2357 Annotation submitted by SC SC SC 83 2018-03-09T12:03:35Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKJD01 2008-06-18 SMRU467 6.10 2011-10-11T09:20:04Z Prokka current 83 SMRU467-sc-2011-01-27-1060656 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKJD01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU467 species_match 98.76 SAMEA1025288 12 Streptococcus pneumoniae 87.05 Streptococcus pneumoniae 1313 PRJEB2395 12 current na 48948 type Streptococcus pneumoniae 2015-07-28 21 21 species Homo sapiens 2122 Streptococcus pneumoniae Streptococcus pneumoniae ERS020950 SC 2009-04-17 v1.2.4 2012-01-20T19:58:20.333 99.1 2154661 87.05 1313 2161 2024-02-05T16:14:49.000 2154661 48948 2154641 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001341195.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CGXP00000000.1 2011-11-29T12:03:48Z GCA_001341195.1 haploid public SMRU1440-sc-2011-01-27-1061653 88.85 1.3 94 2015-07-28T08:11:52 GCA_001457635.1 852120 39 6805_2#24 SMRU1440-sc-2011-01-27-1061653 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025288 1313 GCF_001341195.1 Generic.1.0 88.85 SRA GCF_001341195.1 category_na live 2018-03-09T09:52:53Z SMRU1440 PRJEB2395 GCF_001341195.1-RS_2026_01_27 SC SC 94 2018-03-09T09:52:53Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CGXP01 2009-04-17 SMRU1440 2011-11-29T12:03:48Z Prokka current 94 SMRU1440-sc-2011-01-27-1061653 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CGXP01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU1440 species_match 98.7 SAMEA1025288 12 Streptococcus pneumoniae 87.05 Streptococcus pneumoniae 1313 PRJEB2395 12 current na Best-placed reference protein set; GeneMarkS-2+ 48948 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-27 21 21 species Homo sapiens 2045 Streptococcus pneumoniae Streptococcus pneumoniae ERS020950 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-17 v1.2.4 2012-01-20T19:58:20.333 99.1 2154661 87.05 1313 2268 2024-02-05T16:14:49.000 2154661 48948 2154641 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 181 EBI 100 GCA_001457635.1 GCF_001341195.1-RS_2026_01_27 SLX Streptococcus pneumoniae GCF_001341195.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CGXP00000000.1 2011-11-29T12:03:48Z GCF_001341195.1 haploid public SMRU1440-sc-2011-01-27-1061653 88.85 1.3 94 2015-07-28T08:11:52 GCA_001457635.1 852120 42 6805_2#24 SMRU1440-sc-2011-01-27-1061653 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025288 1313 GCA_001341195.1 Generic.1.0 88.85 SRA GCA_001341195.1 category_na live 2018-03-09T09:52:53Z SMRU1440 PRJEB2395 Annotation submitted by SC SC SC 94 2018-03-09T09:52:53Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CGXP01 2009-04-17 SMRU1440 6.10 2011-11-29T12:03:48Z Prokka current 94 SMRU1440-sc-2011-01-27-1061653 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CGXP01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU1440 species_match 98.7 SAMEA1029152 14 Streptococcus pneumoniae 90.36 Streptococcus pneumoniae 1313 PRJEB2479 14 current na 41980 type Streptococcus pneumoniae 2015-07-13 21 21 species Homo sapiens 2121 Streptococcus pneumoniae Streptococcus pneumoniae ERS022042 SC 2010-03-18 v1.2.4 2012-01-20T20:10:56.820 99.31 2143971 90.36 1313 2160 2024-02-05T16:28:45.000 2143971 41980 2143943 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001089705.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLJP00000000.1 2012-01-05T09:56:37Z GCA_001089705.1 haploid public SMRU2532-sc-2011-01-27-1062745 88.28 1.04 80 2015-07-28T08:12:36 GCA_053203845.1 847254 39 6925_8#12 SMRU2532-sc-2011-01-27-1062745 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029152 1313 GCF_001089705.1 Generic.1.0 88.28 SRA GCF_001089705.1 category_na live 2018-03-09T09:53:04Z SMRU2532 PRJEB2479 GCF_001089705.1-RS_2026_01_24 SC SC 80 2018-03-09T09:53:04Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLJP01 2010-03-18 SMRU2532 2012-01-05T09:56:37Z Prokka current 80 SMRU2532-sc-2011-01-27-1062745 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLJP01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2532 species_match 98.74 SAMEA1029152 14 Streptococcus pneumoniae 90.36 Streptococcus pneumoniae 1313 PRJEB2479 14 current na Best-placed reference protein set; GeneMarkS-2+ 41980 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 21 21 species Homo sapiens 2046 Streptococcus pneumoniae Streptococcus pneumoniae ERS022042 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-03-18 v1.2.4 2012-01-20T20:10:56.820 99.31 2143971 90.36 1313 2264 2024-02-05T16:28:45.000 2143971 41980 2143943 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 177 EBI 100 GCA_053203845.1 GCF_001089705.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_001089705.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLJP00000000.1 2012-01-05T09:56:37Z GCF_001089705.1 haploid public SMRU2532-sc-2011-01-27-1062745 88.28 1.04 80 2015-07-28T08:12:36 GCA_053203845.1 847254 41 6925_8#12 SMRU2532-sc-2011-01-27-1062745 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029152 1313 GCA_001089705.1 Generic.1.0 88.28 SRA GCA_001089705.1 category_na live 2018-03-09T09:53:04Z SMRU2532 PRJEB2479 Annotation submitted by SC SC SC 80 2018-03-09T09:53:04Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLJP01 2010-03-18 SMRU2532 6.10 2012-01-05T09:56:37Z Prokka current 80 SMRU2532-sc-2011-01-27-1062745 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLJP01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2532 species_match 98.74 SAMEA1024853 15 Streptococcus pneumoniae 90.67 Streptococcus pneumoniae 1313 PRJEB2393 15 current na 41686 type Streptococcus pneumoniae 2015-07-24 21 21 species Homo sapiens 2089 Streptococcus pneumoniae Streptococcus pneumoniae ERS020544 SC 2008-12-04 v1.2.4 2012-01-20T19:53:50.573 99.1 2134433 90.67 1313 2125 2024-02-05T16:31:44.000 2134551 41686 2134416 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001338755.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CHSC00000000.1 2011-11-02T10:11:59Z GCA_001338755.1 haploid public SMRU1034-sc-2011-01-27-1061247 88.2 1.25 93 2015-07-28T08:11:10 GCA_053203845.1 843685 36 6731_3#2 SMRU1034-sc-2011-01-27-1061247 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024853 1313 GCF_001338755.1 Generic.1.0 88.2 SRA GCF_001338755.1 category_na live 2018-03-09T09:53:06Z SMRU1034 PRJEB2393 GCF_001338755.1-RS_2026_01_20 SC SC 89 2018-03-09T09:53:06Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHSC01 2008-12-04 SMRU1034 2011-11-02T10:11:59Z Prokka current 89 SMRU1034-sc-2011-01-27-1061247 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHSC01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU1034 species_match 98.74 SAMEA1024853 15 Streptococcus pneumoniae 90.67 Streptococcus pneumoniae 1313 PRJEB2393 15 current na Best-placed reference protein set; GeneMarkS-2+ 41686 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-20 21 21 species Homo sapiens 2017 Streptococcus pneumoniae Streptococcus pneumoniae ERS020544 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-12-04 v1.2.4 2012-01-20T19:53:50.573 99.1 2134433 90.67 1313 2224 2024-02-05T16:31:44.000 2134551 41686 2134416 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 169 EBI 100 GCA_053203845.1 GCF_001338755.1-RS_2026_01_20 SLX Streptococcus pneumoniae GCF_001338755.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CHSC00000000.1 2011-11-02T10:11:59Z GCF_001338755.1 haploid public SMRU1034-sc-2011-01-27-1061247 88.2 1.25 93 2015-07-28T08:11:10 GCA_053203845.1 843685 38 6731_3#2 SMRU1034-sc-2011-01-27-1061247 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024853 1313 GCA_001338755.1 Generic.1.0 88.2 SRA GCA_001338755.1 category_na live 2018-03-09T09:53:06Z SMRU1034 PRJEB2393 Annotation submitted by SC SC SC 89 2018-03-09T09:53:06Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHSC01 2008-12-04 SMRU1034 6.10 2011-11-02T10:11:59Z Prokka current 89 SMRU1034-sc-2011-01-27-1061247 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHSC01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU1034 species_match 98.74 SAMEA2238840 6 Streptococcus pneumoniae 94.88 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 143430 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1981 Streptococcus pneumoniae Streptococcus pneumoniae ERS367652 SC 2006/2012 v1.2.4 2014-05-07T08:35:00.820 99.1 2014059 94.88 1313 2026 2024-02-06T05:28:07.000 2016556 80511 2014056 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900034355.1 type CSF 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FCUM00000000.1 2014-03-18T09:35:30Z GCA_900034355.1 haploid public 2103734-sc-2013-11-05T12:03:17Z-1750203 87.08 0.31 41 2018-03-10T18:56:45 GCA_053203845.1 799890 45 11893_1#81 2103734-sc-2013-11-05T12:03:17Z-1750203 Netherlands 11893_1#81 SAMEA2238840 1313 GCF_900034355.1 Generic.1.0 87.08 SRA GCF_900034355.1 category_na live 2018-03-09T10:30:30Z 2842STDY5644214 PRJEB4909 GCF_900034355.1-RS_2025_09_21 SC SC 31 1750203 2018-03-09T10:30:30Z 2014-03-18T00:00:00.000 2103734 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUM01 2006/2012 2842STDY5644214 2014-03-18T09:35:30Z Prokka current 31 2103734-sc-2013-11-05T12:03:17Z-1750203 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUM01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644214 species_match 98.79 SAMEA2238840 6 Streptococcus pneumoniae 94.88 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 143430 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1896 Streptococcus pneumoniae Streptococcus pneumoniae ERS367652 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:00.820 99.1 2014059 94.88 1313 2106 2024-02-06T05:28:07.000 2016556 80511 2014056 CSF Homo sapiens Streptococcus pneumoniae Disease 159 EBI 100 GCA_053203845.1 GCF_900034355.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900034355.1 type CSF 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FCUM00000000.1 2014-03-18T09:35:30Z GCF_900034355.1 haploid public 2103734-sc-2013-11-05T12:03:17Z-1750203 87.08 0.31 41 2018-03-10T18:56:45 GCA_053203845.1 799890 51 11893_1#81 2103734-sc-2013-11-05T12:03:17Z-1750203 Netherlands 11893_1#81 SAMEA2238840 1313 GCA_900034355.1 Generic.1.0 87.08 SRA GCA_900034355.1 category_na live 2018-03-09T10:30:30Z 2842STDY5644214 PRJEB4909 Annotation submitted by SC SC SC 31 1750203 2018-03-09T10:30:30Z 2014-03-18T00:00:00.000 2103734 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUM01 2006/2012 2842STDY5644214 6.10 2014-03-18T09:35:30Z Prokka current 31 2103734-sc-2013-11-05T12:03:17Z-1750203 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUM01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644214 species_match 98.79 SAMEA2238953 6 Streptococcus pneumoniae 95.41 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 128224 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1969 Streptococcus pneumoniae Streptococcus pneumoniae ERS367765 SC 2006/2012 v1.2.4 2014-05-07T08:35:10.533 99.13 1999956 95.41 1313 2014 2024-02-06T05:10:36.000 2002444 64891 1999951 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900022885.1 type CSF 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 63.7667 https://www.ncbi.nlm.nih.gov/nuccore/FCXM00000000.1 2014-03-18T09:35:30Z GCA_900022885.1 haploid public 2120109-sc-2013-11-05T12:05:27Z-1750318 86.95 0.31 46 2015-08-10T19:24:34 GCA_053203845.1 794114 45 11861_4#4 2120109-sc-2013-11-05T12:05:27Z-1750318 Netherlands 11861_4#4 SAMEA2238953 1313 GCF_900022885.1 Generic.1.0 86.95 SRA GCF_900022885.1 category_na live 2018-03-09T10:28:22Z 2842STDY5644329 PRJEB4909 GCF_900022885.1-RS_2025_09_21 SC SC 36 1750318 2018-03-09T10:28:22Z 2014-03-18T00:00:00.000 2120109 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCXM01 2006/2012 2842STDY5644329 2014-03-18T09:35:30Z Prokka current 36 2120109-sc-2013-11-05T12:05:27Z-1750318 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCXM01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644329 species_match 98.78 SAMEA2238953 6 Streptococcus pneumoniae 95.41 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 128224 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1889 Streptococcus pneumoniae Streptococcus pneumoniae ERS367765 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:10.533 99.13 1999956 95.41 1313 2103 2024-02-06T05:10:36.000 2002444 64891 1999951 CSF Homo sapiens Streptococcus pneumoniae Disease 162 EBI 100 GCA_053203845.1 GCF_900022885.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900022885.1 type CSF 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 63.7667 https://www.ncbi.nlm.nih.gov/nuccore/FCXM00000000.1 2014-03-18T09:35:30Z GCF_900022885.1 haploid public 2120109-sc-2013-11-05T12:05:27Z-1750318 86.95 0.31 46 2015-08-10T19:24:34 GCA_053203845.1 794114 52 11861_4#4 2120109-sc-2013-11-05T12:05:27Z-1750318 Netherlands 11861_4#4 SAMEA2238953 1313 GCA_900022885.1 Generic.1.0 86.95 SRA GCA_900022885.1 category_na live 2018-03-09T10:28:22Z 2842STDY5644329 PRJEB4909 Annotation submitted by SC SC SC 36 1750318 2018-03-09T10:28:22Z 2014-03-18T00:00:00.000 2120109 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCXM01 2006/2012 2842STDY5644329 6.10 2014-03-18T09:35:30Z Prokka current 36 2120109-sc-2013-11-05T12:05:27Z-1750318 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCXM01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644329 species_match 98.78 SAMEA1025298 13 Streptococcus pneumoniae 92.5 Streptococcus pneumoniae 1313 PRJEB2395 13 current na 52586 type Streptococcus pneumoniae 2015-07-17 31 31 species Homo sapiens 1988 Streptococcus pneumoniae Streptococcus pneumoniae ERS020802 SC 2009-02-26 v1.2.4 2012-01-20T19:56:42.976 99.15 2042910 92.5 1313 2028 2024-02-06T09:03:55.000 2042910 52586 2042896 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001156485.1 type nasopharynx 98.88 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CRHJ00000000.1 2011-11-15T17:01:01Z GCA_001156485.1 haploid public SMRU1292-sc-2011-01-27-1061505 86.11 0.31 72 2015-07-28T08:11:35 GCA_053203845.1 808939 40 6736_7#20 SMRU1292-sc-2011-01-27-1061505 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025298 1313 GCF_001156485.1 Generic.1.0 86.11 SRA GCF_001156485.1 category_na live 2018-03-09T12:04:40Z SMRU1292 PRJEB2395 GCF_001156485.1-RS_2026_01_05 SC SC 72 2018-03-09T12:04:40Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRHJ01 2009-02-26 SMRU1292 2011-11-15T17:01:01Z Prokka current 72 SMRU1292-sc-2011-01-27-1061505 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRHJ01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1292 species_match 98.88 SAMEA1025298 13 Streptococcus pneumoniae 92.5 Streptococcus pneumoniae 1313 PRJEB2395 13 current na Best-placed reference protein set; GeneMarkS-2+ 52586 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-05 31 31 species Homo sapiens 1931 Streptococcus pneumoniae Streptococcus pneumoniae ERS020802 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-02-26 v1.2.4 2012-01-20T19:56:42.976 99.15 2042910 92.5 1313 2117 2024-02-06T09:03:55.000 2042910 52586 2042896 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 144 EBI 100 GCA_053203845.1 GCF_001156485.1-RS_2026_01_05 SLX Streptococcus pneumoniae GCF_001156485.1 type nasopharynx 98.88 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CRHJ00000000.1 2011-11-15T17:01:01Z GCF_001156485.1 haploid public SMRU1292-sc-2011-01-27-1061505 86.11 0.31 72 2015-07-28T08:11:35 GCA_053203845.1 808939 42 6736_7#20 SMRU1292-sc-2011-01-27-1061505 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025298 1313 GCA_001156485.1 Generic.1.0 86.11 SRA GCA_001156485.1 category_na live 2018-03-09T12:04:40Z SMRU1292 PRJEB2395 Annotation submitted by SC SC SC 72 2018-03-09T12:04:40Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRHJ01 2009-02-26 SMRU1292 6.10 2011-11-15T17:01:01Z Prokka current 72 SMRU1292-sc-2011-01-27-1061505 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRHJ01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1292 species_match 98.88 SAMEA1463100 13 Streptococcus pneumoniae 95.4 Streptococcus pneumoniae 1313 PRJEB2632 13 current na 52473 type Streptococcus pneumoniae 2015-07-29 31 31 species Homo sapiens 1952 Streptococcus pneumoniae Streptococcus pneumoniae ERS070026 SC 2007 v1.2.4 2012-06-06T09:06:36.493 99.25 2004433 95.4 1313 1982 2024-02-05T18:07:34.000 N8YA4 2004433 52473 2004433 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001104605.2 type nasopharynx 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/CODH00000000.2 2012-05-28T10:19:34Z GCA_001104605.2 haploid public LE4030-sc-2011-11-08T10:07:43Z-1298394 87.14 0.31 119 2015-09-10T08:20:49 N8YA4 GCA_053203845.1 795603 30 7622_4#15 LE4030-sc-2011-11-08T10:07:43Z-1298394 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463100 1313 GCF_001104605.1 Generic.1.0 87.14 SRA GCF_001104605.1 category_na live 2018-03-09T09:54:31Z LE4030 PRJEB2632 GCF_001104605.1-RS_2025_09_15 SC SC 119 N8YA4 2018-03-09T09:54:31Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CODH02 2007 LE4030 2012-05-28T10:19:34Z Velvet current 119 LE4030-sc-2011-11-08T10:07:43Z-1298394 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CODH02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 LE4030 species_match 98.89 SAMEA1463100 13 Streptococcus pneumoniae 95.4 Streptococcus pneumoniae 1313 PRJEB2632 13 current na Best-placed reference protein set; GeneMarkS-2+ 52473 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-15 31 31 species Homo sapiens 1890 Streptococcus pneumoniae Streptococcus pneumoniae ERS070026 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:36.493 99.25 2004433 95.4 1313 2097 2024-02-05T18:07:34.000 N8YA4 2004433 52473 2004433 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 156 EBI 100 GCA_053203845.1 GCF_001104605.1-RS_2025_09_15 SLX Streptococcus pneumoniae GCF_001104605.1 type nasopharynx 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/CODH00000000.2 2012-05-28T10:19:34Z GCF_001104605.1 haploid public LE4030-sc-2011-11-08T10:07:43Z-1298394 87.14 0.31 119 2015-09-10T08:20:49 N8YA4 GCA_053203845.1 795603 51 7622_4#15 LE4030-sc-2011-11-08T10:07:43Z-1298394 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463100 1313 GCA_001104605.2 Generic.1.0 87.14 SRA GCA_001104605.2 category_na live 2018-03-09T09:54:31Z LE4030 PRJEB2632 Annotation submitted by SC SC SC 119 N8YA4 2018-03-09T09:54:31Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CODH02 2007 LE4030 6.10 2012-05-28T10:19:34Z Velvet current 119 LE4030-sc-2011-11-08T10:07:43Z-1298394 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CODH02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 LE4030 species_match 98.89 SAMEA1463113 14 Streptococcus pneumoniae 95.64 Streptococcus pneumoniae 1313 PRJEB2632 14 current na 52285 type Streptococcus pneumoniae 2015-07-29 31 31 species Homo sapiens 1957 Streptococcus pneumoniae Streptococcus pneumoniae ERS069948 SC 2007 v1.2.4 2012-06-06T09:06:32.566 99.25 2006494 95.64 1313 1987 2024-02-05T18:06:35.000 E0ZKK 2006494 52285 2006494 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001127205.2 type nasopharynx 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/COBA00000000.2 2012-05-28T10:19:35Z GCA_001127205.2 haploid public BR1101-sc-2011-11-08T10:06:45Z-1298316 87.45 0.31 131 2015-09-10T08:20:47 E0ZKK GCA_053203845.1 796733 30 7622_2#33 BR1101-sc-2011-11-08T10:06:45Z-1298316 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463113 1313 GCF_001127205.1 Generic.1.0 87.45 SRA GCF_001127205.1 category_na live 2018-03-09T09:54:30Z BR1101 PRJEB2632 GCF_001127205.1-RS_2025_09_15 SC SC 131 E0ZKK 2018-03-09T09:54:30Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COBA02 2007 BR1101 2012-05-28T10:19:35Z Velvet current 131 BR1101-sc-2011-11-08T10:06:45Z-1298316 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COBA02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 BR1101 species_match 98.87 SAMEA1463113 14 Streptococcus pneumoniae 95.64 Streptococcus pneumoniae 1313 PRJEB2632 14 current na Best-placed reference protein set; GeneMarkS-2+ 52285 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-15 31 31 species Homo sapiens 1898 Streptococcus pneumoniae Streptococcus pneumoniae ERS069948 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:32.566 99.25 2006494 95.64 1313 2107 2024-02-05T18:06:35.000 E0ZKK 2006494 52285 2006494 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 157 EBI 100 GCA_053203845.1 GCF_001127205.1-RS_2025_09_15 SLX Streptococcus pneumoniae GCF_001127205.1 type nasopharynx 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/COBA00000000.2 2012-05-28T10:19:35Z GCF_001127205.1 haploid public BR1101-sc-2011-11-08T10:06:45Z-1298316 87.45 0.31 131 2015-09-10T08:20:47 E0ZKK GCA_053203845.1 796733 52 7622_2#33 BR1101-sc-2011-11-08T10:06:45Z-1298316 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463113 1313 GCA_001127205.2 Generic.1.0 87.45 SRA GCA_001127205.2 category_na live 2018-03-09T09:54:30Z BR1101 PRJEB2632 Annotation submitted by SC SC SC 131 E0ZKK 2018-03-09T09:54:30Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COBA02 2007 BR1101 6.10 2012-05-28T10:19:35Z Velvet current 131 BR1101-sc-2011-11-08T10:06:45Z-1298316 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COBA02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 BR1101 species_match 98.87 SAMEA1463083 13 Streptococcus pneumoniae 95.45 Streptococcus pneumoniae 1313 PRJEB2632 13 current na 52277 type Streptococcus pneumoniae 2015-07-29 31 31 species Homo sapiens 1960 Streptococcus pneumoniae Streptococcus pneumoniae ERS070202 SC 2007 v1.2.4 2012-05-15T12:05:36.360 99.19 2005836 95.45 1313 1991 2024-02-06T09:02:12.000 YSOFP 2005836 52277 2005836 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001099325.2 type nasopharynx 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 68.8368 https://www.ncbi.nlm.nih.gov/nuccore/COAC00000000.2 2012-05-09T10:03:15Z GCA_001099325.2 haploid public PT8093-sc-2011-11-08T10:09:54Z-1298570 87.24 0.31 120 2015-09-10T08:20:43 YSOFP GCA_053203845.1 795991 31 7553_5#95 PT8093-sc-2011-11-08T10:09:54Z-1298570 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463083 1313 GCF_001099325.1 Generic.1.0 87.24 SRA GCF_001099325.1 category_na live 2018-03-09T11:41:08Z PT8093 PRJEB2632 GCF_001099325.1-RS_2026_01_19 SC SC 120 YSOFP 2018-03-09T11:41:08Z 2012-05-09T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COAC02 2007 PT8093 2012-05-09T10:03:15Z Velvet current 120 PT8093-sc-2011-11-08T10:09:54Z-1298570 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COAC02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 PT8093 species_match 98.89 SAMEA1463083 13 Streptococcus pneumoniae 95.45 Streptococcus pneumoniae 1313 PRJEB2632 13 current na Best-placed reference protein set; GeneMarkS-2+ 52277 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 31 31 species Homo sapiens 1896 Streptococcus pneumoniae Streptococcus pneumoniae ERS070202 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-05-15T12:05:36.360 99.19 2005836 95.45 1313 2113 2024-02-06T09:02:12.000 YSOFP 2005836 52277 2005836 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 166 EBI 100 GCA_053203845.1 GCF_001099325.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001099325.1 type nasopharynx 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 68.8368 https://www.ncbi.nlm.nih.gov/nuccore/COAC00000000.2 2012-05-09T10:03:15Z GCF_001099325.1 haploid public PT8093-sc-2011-11-08T10:09:54Z-1298570 87.24 0.31 120 2015-09-10T08:20:43 YSOFP GCA_053203845.1 795991 51 7553_5#95 PT8093-sc-2011-11-08T10:09:54Z-1298570 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463083 1313 GCA_001099325.2 Generic.1.0 87.24 SRA GCA_001099325.2 category_na live 2018-03-09T11:41:08Z PT8093 PRJEB2632 Annotation submitted by SC SC SC 120 YSOFP 2018-03-09T11:41:08Z 2012-05-09T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COAC02 2007 PT8093 6.10 2012-05-09T10:03:15Z Velvet current 120 PT8093-sc-2011-11-08T10:09:54Z-1298570 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COAC02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 PT8093 species_match 98.89 SAMEA1024893 13 Streptococcus pneumoniae 92.56 Streptococcus pneumoniae 1313 PRJEB2393 14 current na 53713 type Streptococcus pneumoniae 2015-07-17 31 31 species Homo sapiens 1982 Streptococcus pneumoniae Streptococcus pneumoniae ERS020291 SC 2008-10-01 v1.2.4 2012-01-20T19:51:00.950 99.15 2036382 92.56 1313 2018 2024-02-05T16:29:29.000 2036393 45700 2036366 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001168605.1 type nasopharynx 98.89 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CRLH00000000.1 2011-11-15T09:28:20Z GCA_001168605.1 haploid public SMRU781-sc-2011-01-27-1060970 85.9 0.31 80 2015-07-28T08:11:23 GCA_053203845.1 806277 36 6755_1#13 SMRU781-sc-2011-01-27-1060970 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024893 1313 GCF_001168605.1 Generic.1.0 85.9 SRA GCF_001168605.1 category_na live 2018-03-09T09:53:04Z SMRU781 PRJEB2393 GCF_001168605.1-RS_2026_01_06 SC SC 79 2018-03-09T09:53:04Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRLH01 2008-10-01 SMRU781 2011-11-15T09:28:20Z Prokka current 79 SMRU781-sc-2011-01-27-1060970 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRLH01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU781 species_match 98.89 SAMEA1024893 13 Streptococcus pneumoniae 92.56 Streptococcus pneumoniae 1313 PRJEB2393 14 current na Best-placed reference protein set; GeneMarkS-2+ 53713 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-06 31 31 species Homo sapiens 1925 Streptococcus pneumoniae Streptococcus pneumoniae ERS020291 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-10-01 v1.2.4 2012-01-20T19:51:00.950 99.15 2036382 92.56 1313 2110 2024-02-05T16:29:29.000 2036393 45700 2036366 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 147 EBI 100 GCA_053203845.1 GCF_001168605.1-RS_2026_01_06 SLX Streptococcus pneumoniae GCF_001168605.1 type nasopharynx 98.89 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CRLH00000000.1 2011-11-15T09:28:20Z GCF_001168605.1 haploid public SMRU781-sc-2011-01-27-1060970 85.9 0.31 80 2015-07-28T08:11:23 GCA_053203845.1 806277 38 6755_1#13 SMRU781-sc-2011-01-27-1060970 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024893 1313 GCA_001168605.1 Generic.1.0 85.9 SRA GCA_001168605.1 category_na live 2018-03-09T09:53:04Z SMRU781 PRJEB2393 Annotation submitted by SC SC SC 79 2018-03-09T09:53:04Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRLH01 2008-10-01 SMRU781 6.10 2011-11-15T09:28:20Z Prokka current 79 SMRU781-sc-2011-01-27-1060970 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRLH01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU781 species_match 98.89 SAMEA1024981 14 Streptococcus pneumoniae 91.97 Streptococcus pneumoniae 1313 PRJEB2393 15 current na 44806 type Streptococcus pneumoniae 2015-07-18 31 31 species Homo sapiens 1986 Streptococcus pneumoniae Streptococcus pneumoniae ERS020308 SC 2008-10-04 v1.2.4 2012-01-20T19:51:11.730 99.15 2044741 91.97 1313 2025 2024-02-05T16:18:10.000 2044763 44806 2044733 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001158465.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CRMI00000000.1 2011-11-15T09:28:20Z GCA_001158465.1 haploid public SMRU798-sc-2011-01-27-1060987 89.08 0.31 80 2015-07-28T08:11:24 GCA_001457635.1 809535 39 6755_2#6 SMRU798-sc-2011-01-27-1060987 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024981 1313 GCF_001158465.1 Generic.1.0 89.08 SRA GCF_001158465.1 category_na live 2018-03-09T09:52:55Z SMRU798 PRJEB2393 GCF_001158465.1-RS_2026_01_05 SC SC 78 2018-03-09T09:52:55Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRMI01 2008-10-04 SMRU798 2011-11-15T09:28:20Z Prokka current 78 SMRU798-sc-2011-01-27-1060987 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRMI01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU798 species_match 98.74 SAMEA1024981 14 Streptococcus pneumoniae 91.97 Streptococcus pneumoniae 1313 PRJEB2393 15 current na Best-placed reference protein set; GeneMarkS-2+ 44806 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-05 31 31 species Homo sapiens 1943 Streptococcus pneumoniae Streptococcus pneumoniae ERS020308 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-10-04 v1.2.4 2012-01-20T19:51:11.730 99.15 2044741 91.97 1313 2129 2024-02-05T16:18:10.000 2044763 44806 2044733 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 145 EBI 100 GCA_001457635.1 GCF_001158465.1-RS_2026_01_05 SLX Streptococcus pneumoniae GCF_001158465.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CRMI00000000.1 2011-11-15T09:28:20Z GCF_001158465.1 haploid public SMRU798-sc-2011-01-27-1060987 89.08 0.31 80 2015-07-28T08:11:24 GCA_001457635.1 809535 41 6755_2#6 SMRU798-sc-2011-01-27-1060987 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024981 1313 GCA_001158465.1 Generic.1.0 89.08 SRA GCA_001158465.1 category_na live 2018-03-09T09:52:55Z SMRU798 PRJEB2393 Annotation submitted by SC SC SC 78 2018-03-09T09:52:55Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRMI01 2008-10-04 SMRU798 6.10 2011-11-15T09:28:20Z Prokka current 78 SMRU798-sc-2011-01-27-1060987 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRMI01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU798 species_match 98.74 SAMEA1024963 15 Streptococcus pneumoniae 91.82 Streptococcus pneumoniae 1313 PRJEB2393 15 current na 44622 type Streptococcus pneumoniae 2015-04-22 31 31 species Homo sapiens 1991 Streptococcus pneumoniae Streptococcus pneumoniae ERS020620 SC 2008-12-30 v1.2.4 2012-01-20T19:54:41.743 99.1 2054316 91.82 1313 2027 2024-02-06T09:04:00.000 2054411 43901 2054282 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001339395.1 type nasopharynx 98.88 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CHRG00000000.1 2011-11-02T10:11:58Z GCA_001339395.1 haploid public SMRU1110-sc-2011-01-27-1061323 85.96 0.73 102 2015-07-28T08:11:15 GCA_053203845.1 813111 36 6731_6#6 SMRU1110-sc-2011-01-27-1061323 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024963 1313 GCF_001339395.1 Generic.1.0 85.96 SRA GCF_001339395.1 category_na live 2018-03-09T12:05:54Z SMRU1110 PRJEB2393 GCF_001339395.1-RS_2026_01_14 SC SC 99 2018-03-09T12:05:54Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHRG01 2008-12-30 SMRU1110 2011-11-02T10:11:58Z Prokka current 99 SMRU1110-sc-2011-01-27-1061323 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHRG01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU1110 species_match 98.88 SAMEA1024963 15 Streptococcus pneumoniae 91.82 Streptococcus pneumoniae 1313 PRJEB2393 15 current na Best-placed reference protein set; GeneMarkS-2+ 44622 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-14 31 31 species Homo sapiens 1920 Streptococcus pneumoniae Streptococcus pneumoniae ERS020620 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-12-30 v1.2.4 2012-01-20T19:54:41.743 99.1 2054316 91.82 1313 2116 2024-02-06T09:04:00.000 2054411 43901 2054282 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 158 EBI 100 GCA_053203845.1 GCF_001339395.1-RS_2026_01_14 SLX Streptococcus pneumoniae GCF_001339395.1 type nasopharynx 98.88 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CHRG00000000.1 2011-11-02T10:11:58Z GCF_001339395.1 haploid public SMRU1110-sc-2011-01-27-1061323 85.96 0.73 102 2015-07-28T08:11:15 GCA_053203845.1 813111 38 6731_6#6 SMRU1110-sc-2011-01-27-1061323 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024963 1313 GCA_001339395.1 Generic.1.0 85.96 SRA GCA_001339395.1 category_na live 2018-03-09T12:05:54Z SMRU1110 PRJEB2393 Annotation submitted by SC SC SC 99 2018-03-09T12:05:54Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHRG01 2008-12-30 SMRU1110 6.10 2011-11-02T10:11:58Z Prokka current 99 SMRU1110-sc-2011-01-27-1061323 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHRG01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU1110 species_match 98.88 SAMEA1024555 13 Streptococcus pneumoniae 93.69 Streptococcus pneumoniae 1313 PRJEB2393 14 current na 37923 type Streptococcus pneumoniae 2015-07-28 31 31 species Homo sapiens 1968 Streptococcus pneumoniae Streptococcus pneumoniae ERS020203 SC 2008-08-25 v1.2.4 2012-01-20T19:50:03.873 98.64 2029901 93.69 1313 2006 2024-02-05T16:16:22.000 2029995 37923 2029880 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001336975.1 type nasopharynx 98.83 OK 39.5 Streptococcus pneumoniae 24.1214 https://www.ncbi.nlm.nih.gov/nuccore/CFCX00000000.1 2011-11-02T10:11:58Z GCA_001336975.1 haploid public SMRU693-sc-2011-01-27-1060882 86.67 2.2 94 2015-07-28T08:11:06 GCA_053203845.1 803904 38 6730_6#21 SMRU693-sc-2011-01-27-1060882 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024555 1313 GCF_001336975.1 Generic.1.0 86.67 SRA GCF_001336975.1 category_na live 2018-03-09T09:52:54Z SMRU693 PRJEB2393 GCF_001336975.1-RS_2026_01_24 SC SC 91 2018-03-09T09:52:54Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFCX01 2008-08-25 SMRU693 2011-11-02T10:11:58Z Prokka current 91 SMRU693-sc-2011-01-27-1060882 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFCX01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-01 SMRU693 species_match 98.83 SAMEA1024555 13 Streptococcus pneumoniae 93.69 Streptococcus pneumoniae 1313 PRJEB2393 14 current na Best-placed reference protein set; GeneMarkS-2+ 37923 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 31 31 species Homo sapiens 1892 Streptococcus pneumoniae Streptococcus pneumoniae ERS020203 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-08-25 v1.2.4 2012-01-20T19:50:03.873 98.64 2029901 93.69 1313 2110 2024-02-05T16:16:22.000 2029995 37923 2029880 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 178 EBI 100 GCA_053203845.1 GCF_001336975.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_001336975.1 type nasopharynx 98.83 OK 39.5 Streptococcus pneumoniae 24.1214 https://www.ncbi.nlm.nih.gov/nuccore/CFCX00000000.1 2011-11-02T10:11:58Z GCF_001336975.1 haploid public SMRU693-sc-2011-01-27-1060882 86.67 2.2 94 2015-07-28T08:11:06 GCA_053203845.1 803904 40 6730_6#21 SMRU693-sc-2011-01-27-1060882 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024555 1313 GCA_001336975.1 Generic.1.0 86.67 SRA GCA_001336975.1 category_na live 2018-03-09T09:52:54Z SMRU693 PRJEB2393 Annotation submitted by SC SC SC 91 2018-03-09T09:52:54Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFCX01 2008-08-25 SMRU693 6.10 2011-11-02T10:11:58Z Prokka current 91 SMRU693-sc-2011-01-27-1060882 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFCX01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-01 SMRU693 species_match 98.83 SAMEA2796698 1 Streptococcus pneumoniae 94.94 Streptococcus pneumoniae 1313 PRJEB31141 2 current na 1991784 type Streptococcus pneumoniae 2019-02-20 31 31 species Homo sapiens 1948 Streptococcus pneumoniae Streptococcus pneumoniae ERS558309 WTSI 2004 v1.2.4 2015-01-30T08:09:20.233 99.1 1990879 94.94 1313 1995 Streptococcus pneumoniae 2024-02-06T15:55:29.000 1991784 379071 1990879 blood Homo sapiens Streptococcus pneumoniae Pneumonia 1 ST10479 EBI 297 GCA_053203845.1 Annotation submitted by WTSI SLX Streptococcus pneumoniae GCA_900692745.1 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 2015-01-27T09:20:52Z GCA_900692745.1 haploid public GPS_US_9314_04-sc-2138680 86.13 0.62 13 2017-10-07T09:05:51 GCA_053203845.1 790663 47 14673_4#5-2 GPS_US_9314_04-sc-2138680 USA 14673_4#5 SAMEA2796698 1313 GCF_900692745.1 Generic.1.0 86.13 SRA GCF_900692745.1 category_na live 2019-04-18T15:39:29Z GPSC57 PRJEB31141 GCF_900692745.1-RS_2026_02_12 WTSI SC 1 2138680 2019-04-18T15:39:29Z 2015-01-27T00:00:00.000 9314_04 2004 2245STDY5982722 2015-01-27T09:20:52Z velvet current 1 GPS_US_9314_04-sc-2138680 Generic Reference genome for Global Pneumococcal Sequence (GPS ) project Chromosome SOURCE_DATABASE_GENBANK USA 2019-02-20 GPSC57 species_match 98.85 SAMEA2796698 1 Streptococcus pneumoniae 94.94 Streptococcus pneumoniae 1313 PRJEB31141 2 current na Best-placed reference protein set; GeneMarkS-2+ 1991784 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-12 31 31 species Homo sapiens 1856 Streptococcus pneumoniae Streptococcus pneumoniae ERS558309 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2004 v1.2.4 2015-01-30T08:09:20.233 99.1 1990879 94.94 1313 2067 Streptococcus pneumoniae 2024-02-06T15:55:29.000 1991784 379071 1990879 blood Homo sapiens Streptococcus pneumoniae Pneumonia 162 1 ST10479 EBI 297 GCA_053203845.1 GCF_900692745.1-RS_2026_02_12 SLX Streptococcus pneumoniae GCF_900692745.1 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 2015-01-27T09:20:52Z GCF_900692745.1 haploid public GPS_US_9314_04-sc-2138680 86.13 0.62 13 2017-10-07T09:05:51 GCA_053203845.1 790663 49 14673_4#5-2 GPS_US_9314_04-sc-2138680 USA 14673_4#5 SAMEA2796698 1313 GCA_900692745.1 Generic.1.0 86.13 SRA GCA_900692745.1 category_na live 2019-04-18T15:39:29Z GPSC57 PRJEB31141 Annotation submitted by WTSI WTSI SC 1 2138680 2019-04-18T15:39:29Z 2015-01-27T00:00:00.000 9314_04 2004 GPSC57 substr. ST10479 6.10 2015-01-27T09:20:52Z velvet current 1 GPS_US_9314_04-sc-2138680 Generic Reference genome for Global Pneumococcal Sequence (GPS ) project Chromosome SOURCE_DATABASE_REFSEQ USA 2019-02-20 GPSC57 species_match 98.85 SAMEA1026431 6 Streptococcus pneumoniae 94.99 Streptococcus pneumoniae 1313 PRJEB2417 7 current na 125548 type Streptococcus pneumoniae 2017-06-26 31 31 species Homo sapiens 1970 Streptococcus pneumoniae ERS025200 SC 2011-03-01 v1.2.4 2011-09-29T19:48:56.940 99.0 2005827 94.99 1313 2018 2017-06-24T16:02:31.000 2005912 123722 2005824 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900193625.1 type Nasophaynx 98.79 OK 39.5 Streptococcus pneumoniae 46.8856 https://www.ncbi.nlm.nih.gov/nuccore/FYYJ00000000.1 2011-09-27 GCA_900193625.1 haploid ERS025200 86.83 0.31 31 2017-06-28T08:06:31 GCA_053203845.1 797003 48 6570_1#8 United Kingdom UoS5263-sc-2011-03-11-1099010; 6570_18 1313 GCF_900193625.1 Generic.1.0 86.83 SRA Sample Description GCF_900193625.1 category_na live 2017-06-22 UoS5263 PRJEB2417 GCF_900193625.1-RS_2025_08_30 SC 27 1099010 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYYJ01 2011-03-01 UoS5263 Prokka current 27 ERS025200 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYYJ01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-26 UoS5263 species_match 98.79 SAMEA1026431 6 Streptococcus pneumoniae 94.99 Streptococcus pneumoniae 1313 PRJEB2417 7 current na Best-placed reference protein set; GeneMarkS-2+ 125548 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-30 31 31 species Homo sapiens 1890 Streptococcus pneumoniae ERS025200 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2011-03-01 v1.2.4 2011-09-29T19:48:56.940 99.0 2005827 94.99 1313 2096 2017-06-24T16:02:31.000 2005912 123722 2005824 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 155 EBI 100 GCA_053203845.1 GCF_900193625.1-RS_2025_08_30 SLX Streptococcus pneumoniae GCF_900193625.1 type Nasophaynx 98.79 OK 39.5 Streptococcus pneumoniae 46.8856 https://www.ncbi.nlm.nih.gov/nuccore/FYYJ00000000.1 2011-09-27 GCF_900193625.1 haploid ERS025200 86.83 0.31 31 2017-06-28T08:06:31 GCA_053203845.1 797003 51 6570_1#8 United Kingdom UoS5263-sc-2011-03-11-1099010; 6570_18 1313 GCA_900193625.1 Generic.1.0 86.83 SRA Sample Description GCA_900193625.1 category_na live 2017-06-22 UoS5263 PRJEB2417 Annotation submitted by SC SC 27 1099010 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYYJ01 2011-03-01 UoS5263 6.10 Prokka current 27 ERS025200 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYYJ01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-26 UoS5263 species_match 98.79 SAMEA2382808 5 Streptococcus pneumoniae 95.32 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 169376 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1980 Streptococcus pneumoniae Streptococcus pneumoniae ERS409133 SC 2006/2012 v1.2.4 2014-07-10T08:06:46.646 99.13 2004081 95.32 1313 2027 2024-02-06T06:59:43.000 2006004 116418 2004079 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900026245.1 type blood 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 63.7667 https://www.ncbi.nlm.nih.gov/nuccore/FDHO00000000.1 2014-07-09T17:25:44Z GCA_900026245.1 haploid public 2060375_II-sc-1870055 87.06 0.31 39 2015-08-10T19:43:36 GCA_053203845.1 795669 47 12718_4#73 2060375_II-sc-1870055 Netherlands 12718_4#73 SAMEA2382808 1313 GCF_900026245.1 Generic.1.0 87.06 SRA GCF_900026245.1 category_na live 2018-03-09T10:43:34Z 2842STDY5753350 PRJEB4909 GCF_900026245.1-RS_2026_01_25 SC SC 32 1870055 2018-03-09T10:43:34Z 2014-07-09T00:00:00.000 2060375_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDHO01 2006/2012 2842STDY5753350 2014-07-09T17:25:44Z Prokka current 32 2060375_II-sc-1870055 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDHO01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753350 species_match 98.78 SAMEA2382808 5 Streptococcus pneumoniae 95.32 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 169376 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1894 Streptococcus pneumoniae Streptococcus pneumoniae ERS409133 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-10T08:06:46.646 99.13 2004081 95.32 1313 2112 2024-02-06T06:59:43.000 2006004 116418 2004079 blood Homo sapiens Streptococcus pneumoniae Disease 164 EBI 100 GCA_053203845.1 GCF_900026245.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900026245.1 type blood 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 63.7667 https://www.ncbi.nlm.nih.gov/nuccore/FDHO00000000.1 2014-07-09T17:25:44Z GCF_900026245.1 haploid public 2060375_II-sc-1870055 87.06 0.31 39 2015-08-10T19:43:36 GCA_053203845.1 795669 54 12718_4#73 2060375_II-sc-1870055 Netherlands 12718_4#73 SAMEA2382808 1313 GCA_900026245.1 Generic.1.0 87.06 SRA GCA_900026245.1 category_na live 2018-03-09T10:43:34Z 2842STDY5753350 PRJEB4909 Annotation submitted by SC SC SC 32 1870055 2018-03-09T10:43:34Z 2014-07-09T00:00:00.000 2060375_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDHO01 2006/2012 2842STDY5753350 6.10 2014-07-09T17:25:44Z Prokka current 32 2060375_II-sc-1870055 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDHO01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753350 species_match 98.78 SAMEA2239125 7 Streptococcus pneumoniae 93.43 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 119203 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2071 Streptococcus pneumoniae Streptococcus pneumoniae ERS367937 SC 2006/2012 v1.2.4 2014-05-07T08:35:22.200 99.0 2095262 93.43 1313 2116 2024-02-06T05:03:57.000 2096858 112370 2095261 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900018375.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 46.8856 https://www.ncbi.nlm.nih.gov/nuccore/FDRS00000000.1 2014-03-18T09:35:30Z GCA_900018375.1 haploid public 2000305-sc-2013-11-05T12:08:20Z-1750495 89.21 0.47 35 2015-08-10T19:24:43 GCA_053203845.1 830070 45 11860_7#86 2000305-sc-2013-11-05T12:08:20Z-1750495 Netherlands 11860_7#86 SAMEA2239125 1313 GCF_900018375.1 Generic.1.0 89.21 SRA GCF_900018375.1 category_na live 2018-03-09T10:27:38Z 2842STDY5644506 PRJEB4909 GCF_900018375.1-RS_2025_01_03 SC SC 29 1750495 2018-03-09T10:27:38Z 2014-03-18T00:00:00.000 2000305 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRS01 2006/2012 2842STDY5644506 2014-03-18T09:35:30Z Prokka current 29 2000305-sc-2013-11-05T12:08:20Z-1750495 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRS01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644506 species_match 98.83 SAMEA2239125 7 Streptococcus pneumoniae 93.43 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 119203 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-01-03 species Homo sapiens 1979 Streptococcus pneumoniae Streptococcus pneumoniae ERS367937 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:22.200 99.0 2095262 93.43 1313 2199 2024-02-06T05:03:57.000 2096858 112370 2095261 CSF Homo sapiens Streptococcus pneumoniae Disease 169 EBI 100 GCA_053203845.1 GCF_900018375.1-RS_2025_01_03 SLX Streptococcus pneumoniae GCF_900018375.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 46.8856 https://www.ncbi.nlm.nih.gov/nuccore/FDRS00000000.1 2014-03-18T09:35:30Z GCF_900018375.1 haploid public 2000305-sc-2013-11-05T12:08:20Z-1750495 89.21 0.47 35 2015-08-10T19:24:43 GCA_053203845.1 830070 51 11860_7#86 2000305-sc-2013-11-05T12:08:20Z-1750495 Netherlands 11860_7#86 SAMEA2239125 1313 GCA_900018375.1 Generic.1.0 89.21 SRA GCA_900018375.1 category_na live 2018-03-09T10:27:38Z 2842STDY5644506 PRJEB4909 Annotation submitted by SC SC SC 29 1750495 2018-03-09T10:27:38Z 2014-03-18T00:00:00.000 2000305 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRS01 2006/2012 2842STDY5644506 6.9 2014-03-18T09:35:30Z Prokka current 29 2000305-sc-2013-11-05T12:08:20Z-1750495 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRS01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644506 species_match 98.83 SAMEA2238277 5 Streptococcus pneumoniae 95.44 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 179269 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1969 Streptococcus pneumoniae Streptococcus pneumoniae ERS367089 SC 2006/2012 v1.2.4 2014-05-07T08:34:11.500 99.13 1999483 95.44 1313 2015 2024-02-06T05:11:34.000 2002483 100274 1999483 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900031095.1 type CSF 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 63.7667 https://www.ncbi.nlm.nih.gov/nuccore/FDVJ00000000.1 2014-03-18T09:35:31Z GCA_900031095.1 haploid public 2060375-sc-2013-11-05T11:53:52Z-1749635 86.97 0.31 42 2015-08-10T19:24:05 GCA_053203845.1 793867 46 11860_4#1 2060375-sc-2013-11-05T11:53:52Z-1749635 Netherlands 11860_4#1 SAMEA2238277 1313 GCF_900031095.1 Generic.1.0 86.97 SRA GCF_900031095.1 category_na live 2018-03-09T10:28:31Z 2842STDY5643646 PRJEB4909 GCF_900031095.1-RS_2025_09_21 SC SC 30 1749635 2018-03-09T10:28:31Z 2014-03-18T00:00:00.000 2060375 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDVJ01 2006/2012 2842STDY5643646 2014-03-18T09:35:31Z Prokka current 30 2060375-sc-2013-11-05T11:53:52Z-1749635 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDVJ01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643646 species_match 98.78 SAMEA2238277 5 Streptococcus pneumoniae 95.44 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 179269 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1892 Streptococcus pneumoniae Streptococcus pneumoniae ERS367089 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:11.500 99.13 1999483 95.44 1313 2106 2024-02-06T05:11:34.000 2002483 100274 1999483 CSF Homo sapiens Streptococcus pneumoniae Disease 161 EBI 100 GCA_053203845.1 GCF_900031095.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900031095.1 type CSF 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 63.7667 https://www.ncbi.nlm.nih.gov/nuccore/FDVJ00000000.1 2014-03-18T09:35:31Z GCF_900031095.1 haploid public 2060375-sc-2013-11-05T11:53:52Z-1749635 86.97 0.31 42 2015-08-10T19:24:05 GCA_053203845.1 793867 53 11860_4#1 2060375-sc-2013-11-05T11:53:52Z-1749635 Netherlands 11860_4#1 SAMEA2238277 1313 GCA_900031095.1 Generic.1.0 86.97 SRA GCA_900031095.1 category_na live 2018-03-09T10:28:31Z 2842STDY5643646 PRJEB4909 Annotation submitted by SC SC SC 30 1749635 2018-03-09T10:28:31Z 2014-03-18T00:00:00.000 2060375 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDVJ01 2006/2012 2842STDY5643646 6.10 2014-03-18T09:35:31Z Prokka current 30 2060375-sc-2013-11-05T11:53:52Z-1749635 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDVJ01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643646 species_match 98.78 SAMEA2383235 6 Streptococcus pneumoniae 95.4 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 128237 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1972 Streptococcus pneumoniae Streptococcus pneumoniae ERS409560 SC 2006/2012 v1.2.4 2014-07-17T08:09:40.716 99.13 1998984 95.4 1313 2018 2024-02-06T06:51:31.000 2001342 89070 1998982 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900047955.1 type blood 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 63.7667 https://www.ncbi.nlm.nih.gov/nuccore/FEMV00000000.1 2014-07-16T11:40:12Z GCA_900047955.1 haploid public 2120109_II-sc-1870487 86.91 0.31 42 2018-03-10T19:06:33 GCA_053203845.1 793770 46 12754_4#25 2120109_II-sc-1870487 Netherlands 12754_4#25 SAMEA2383235 1313 GCF_900047955.1 Generic.1.0 86.91 SRA GCF_900047955.1 category_na live 2018-03-09T10:42:35Z 2842STDY5753782 PRJEB4909 GCF_900047955.1-RS_2026_01_25 SC SC 33 1870487 2018-03-09T10:42:35Z 2014-07-16T00:00:00.000 2120109_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEMV01 2006/2012 2842STDY5753782 2014-07-16T11:40:12Z Prokka current 33 2120109_II-sc-1870487 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEMV01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753782 species_match 98.78 SAMEA2383235 6 Streptococcus pneumoniae 95.4 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 128237 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1893 Streptococcus pneumoniae Streptococcus pneumoniae ERS409560 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:40.716 99.13 1998984 95.4 1313 2109 2024-02-06T06:51:31.000 2001342 89070 1998982 blood Homo sapiens Streptococcus pneumoniae Disease 162 EBI 100 GCA_053203845.1 GCF_900047955.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900047955.1 type blood 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 63.7667 https://www.ncbi.nlm.nih.gov/nuccore/FEMV00000000.1 2014-07-16T11:40:12Z GCF_900047955.1 haploid public 2120109_II-sc-1870487 86.91 0.31 42 2018-03-10T19:06:33 GCA_053203845.1 793770 54 12754_4#25 2120109_II-sc-1870487 Netherlands 12754_4#25 SAMEA2383235 1313 GCA_900047955.1 Generic.1.0 86.91 SRA GCA_900047955.1 category_na live 2018-03-09T10:42:35Z 2842STDY5753782 PRJEB4909 Annotation submitted by SC SC SC 33 1870487 2018-03-09T10:42:35Z 2014-07-16T00:00:00.000 2120109_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEMV01 2006/2012 2842STDY5753782 6.10 2014-07-16T11:40:12Z Prokka current 33 2120109_II-sc-1870487 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEMV01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753782 species_match 98.78 SAMEA1029348 8 Streptococcus pneumoniae 92.52 Streptococcus pneumoniae 1313 PRJEB2480 8 current na 79720 type Streptococcus pneumoniae 2015-07-14 34 34 species Homo sapiens 1970 Streptococcus pneumoniae Streptococcus pneumoniae ERS022517 SC 2010-07-05 v1.2.4 2012-02-09T20:48:57.010 99.12 2017052 92.52 1313 2009 2024-02-05T21:34:35.000 2017052 79720 2017044 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001149465.1 type nasopharynx 98.76 OK 40.0 Streptococcus pneumoniae 62.8385 https://www.ncbi.nlm.nih.gov/nuccore/CMJD00000000.1 2012-02-07T17:03:03Z GCA_001149465.1 haploid public SMRU3007-sc-2011-01-27-1063220 88.4 0.31 43 2015-07-28T08:13:18 GCA_001457635.1 802248 39 7038_7#7 SMRU3007-sc-2011-01-27-1063220 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029348 1313 GCF_001149465.1 Generic.1.0 88.4 SRA GCF_001149465.1 category_na live 2018-03-09T09:59:32Z SMRU3007 PRJEB2480 GCF_001149465.1-RS_2026_01_06 SC SC 43 2018-03-09T09:59:32Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMJD01 2010-07-05 SMRU3007 2012-02-07T17:03:03Z Prokka current 43 SMRU3007-sc-2011-01-27-1063220 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMJD01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU3007 species_match 98.76 SAMEA1029348 8 Streptococcus pneumoniae 92.52 Streptococcus pneumoniae 1313 PRJEB2480 8 current na Best-placed reference protein set; GeneMarkS-2+ 79720 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-06 34 34 species Homo sapiens 1920 Streptococcus pneumoniae Streptococcus pneumoniae ERS022517 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-07-05 v1.2.4 2012-02-09T20:48:57.010 99.12 2017052 92.52 1313 2110 2024-02-05T21:34:35.000 2017052 79720 2017044 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 148 EBI 100 GCA_001457635.1 GCF_001149465.1-RS_2026_01_06 SLX Streptococcus pneumoniae GCF_001149465.1 type nasopharynx 98.76 OK 40.0 Streptococcus pneumoniae 62.8385 https://www.ncbi.nlm.nih.gov/nuccore/CMJD00000000.1 2012-02-07T17:03:03Z GCF_001149465.1 haploid public SMRU3007-sc-2011-01-27-1063220 88.4 0.31 43 2015-07-28T08:13:18 GCA_001457635.1 802248 42 7038_7#7 SMRU3007-sc-2011-01-27-1063220 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029348 1313 GCA_001149465.1 Generic.1.0 88.4 SRA GCA_001149465.1 category_na live 2018-03-09T09:59:32Z SMRU3007 PRJEB2480 Annotation submitted by SC SC SC 43 2018-03-09T09:59:32Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMJD01 2010-07-05 SMRU3007 6.10 2012-02-07T17:03:03Z Prokka current 43 SMRU3007-sc-2011-01-27-1063220 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMJD01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU3007 species_match 98.76 SAMEA1032665 11 Streptococcus pneumoniae 92.98 Streptococcus pneumoniae 1313 PRJEB2632 11 current na 76543 type Streptococcus pneumoniae 2015-07-29 34 34 species Homo sapiens 2067 Streptococcus pneumoniae Streptococcus pneumoniae ERS043930 SC 2004 v1.2.3 2012-01-20T21:36:50.903 99.25 2106396 92.98 1313 2098 2024-02-06T09:02:17.000 2106396 76543 2106396 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001126445.2 type nasopharynx 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/CNWK00000000.2 2012-01-16T15:10:49Z GCA_001126445.2 haploid public 3115-sc-2011-08-01T09:43:41Z-1249995 89.25 0.47 142 2015-09-10T08:19:46 GCA_053203845.1 834811 31 7001_2#11 3115-sc-2011-08-01T09:43:41Z-1249995 USA: Massachesetts Streptococcus pneumoniae SAMEA1032665 1313 GCF_001126445.1 Generic.1.0 89.25 SRA GCF_001126445.1 category_na live 2018-03-09T11:42:14Z R34-3115 PRJEB2632 GCF_001126445.1-RS_2025_03_31 SC SC 142 2018-03-09T11:42:14Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNWK02 2004 R34-3115 2012-01-16T15:10:49Z Velvet current 142 3115-sc-2011-08-01T09:43:41Z-1249995 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNWK02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 3115 species_match 98.75 SAMEA1032665 11 Streptococcus pneumoniae 92.98 Streptococcus pneumoniae 1313 PRJEB2632 11 current na Best-placed reference protein set; GeneMarkS-2+ 76543 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-03-31 34 34 species Homo sapiens 2009 Streptococcus pneumoniae Streptococcus pneumoniae ERS043930 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2004 v1.2.3 2012-01-20T21:36:50.903 99.25 2106396 92.98 1313 2233 2024-02-06T09:02:17.000 2106396 76543 2106396 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 173 EBI 100 GCA_053203845.1 GCF_001126445.1-RS_2025_03_31 SLX Streptococcus pneumoniae GCF_001126445.1 type nasopharynx 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/CNWK00000000.2 2012-01-16T15:10:49Z GCF_001126445.1 haploid public 3115-sc-2011-08-01T09:43:41Z-1249995 89.25 0.47 142 2015-09-10T08:19:46 GCA_053203845.1 834811 51 7001_2#11 3115-sc-2011-08-01T09:43:41Z-1249995 USA: Massachesetts Streptococcus pneumoniae SAMEA1032665 1313 GCA_001126445.2 Generic.1.0 89.25 SRA GCA_001126445.2 category_na live 2018-03-09T11:42:14Z R34-3115 PRJEB2632 Annotation submitted by SC SC SC 142 2018-03-09T11:42:14Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNWK02 2004 R34-3115 6.10 2012-01-16T15:10:49Z Velvet current 142 3115-sc-2011-08-01T09:43:41Z-1249995 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNWK02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 3115 species_match 98.75 SAMEA2239042 7 Streptococcus pneumoniae 95.35 Streptococcus pneumoniae 1313 PRJEB4909 9 current na 89286 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1973 Streptococcus pneumoniae Streptococcus pneumoniae ERS367854 SC 2006/2012 v1.2.4 2014-05-07T08:35:16.760 99.1 2004003 95.35 1313 2020 2024-02-06T05:14:26.000 2005713 70275 2004002 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900020675.1 type CSF 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FCQP00000000.1 2014-03-18T09:35:29Z GCA_900020675.1 haploid public 990589-sc-2013-11-05T12:06:57Z-1750410 87.07 0.31 46 2018-03-10T18:56:54 GCA_053203845.1 795720 47 11861_4#96 990589-sc-2013-11-05T12:06:57Z-1750410 Netherlands 11861_4#96 SAMEA2239042 1313 GCF_900020675.1 Generic.1.0 87.07 SRA GCF_900020675.1 category_na live 2018-03-09T10:28:51Z 2842STDY5644421 PRJEB4909 GCF_900020675.1-RS_2025_12_21 SC SC 40 1750410 2018-03-09T10:28:51Z 2014-03-18T00:00:00.000 990589 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCQP01 2006/2012 2842STDY5644421 2014-03-18T09:35:29Z Prokka current 40 990589-sc-2013-11-05T12:06:57Z-1750410 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCQP01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644421 species_match 98.76 SAMEA2239042 7 Streptococcus pneumoniae 95.35 Streptococcus pneumoniae 1313 PRJEB4909 9 current na Best-placed reference protein set; GeneMarkS-2+ 89286 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-21 species Homo sapiens 1885 Streptococcus pneumoniae Streptococcus pneumoniae ERS367854 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:16.760 99.1 2004003 95.35 1313 2104 2024-02-06T05:14:26.000 2005713 70275 2004002 CSF Homo sapiens Streptococcus pneumoniae Disease 164 EBI 100 GCA_053203845.1 GCF_900020675.1-RS_2025_12_21 SLX Streptococcus pneumoniae GCF_900020675.1 type CSF 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FCQP00000000.1 2014-03-18T09:35:29Z GCF_900020675.1 haploid public 990589-sc-2013-11-05T12:06:57Z-1750410 87.07 0.31 46 2018-03-10T18:56:54 GCA_053203845.1 795720 55 11861_4#96 990589-sc-2013-11-05T12:06:57Z-1750410 Netherlands 11861_4#96 SAMEA2239042 1313 GCA_900020675.1 Generic.1.0 87.07 SRA GCA_900020675.1 category_na live 2018-03-09T10:28:51Z 2842STDY5644421 PRJEB4909 Annotation submitted by SC SC SC 40 1750410 2018-03-09T10:28:51Z 2014-03-18T00:00:00.000 990589 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCQP01 2006/2012 2842STDY5644421 6.10 2014-03-18T09:35:29Z Prokka current 40 990589-sc-2013-11-05T12:06:57Z-1750410 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCQP01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644421 species_match 98.76 SAMEA1026671 12 Streptococcus pneumoniae 95.67 Streptococcus pneumoniae 1313 PRJEB2417 12 current na 67180 type Streptococcus pneumoniae 2017-06-27 31 31 species Homo sapiens 1946 Streptococcus pneumoniae ERS023167 SC 2008-01-23 v1.2.4 2011-09-13T21:54:43.700 98.97 1992479 95.67 1313 1992 2017-06-24T15:34:07.000 1992479 67180 1992478 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900190205.1 type Nasophaynx 98.84 OK 39.5 Streptococcus pneumoniae 45.4964 https://www.ncbi.nlm.nih.gov/nuccore/FYLF00000000.1 2011-09-06 GCA_900190205.1 haploid ERS023167 86.87 0.31 54 2017-06-28T08:06:06 GCA_053203845.1 791289 46 6472_7#17 United Kingdom UoS2227-sc-2011-02-14-1078221; 6472_717 1313 GCF_900190205.1 Generic.1.0 86.87 SRA Sample Description GCF_900190205.1 category_na live 2017-06-22 UoS2227 PRJEB2417 GCF_900190205.1-RS_2025_09_04 SC 54 1078221 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYLF01 2008-01-23 UoS2227 Prokka current 54 ERS023167 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYLF01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS2227 species_match 98.84 SAMEA1026671 12 Streptococcus pneumoniae 95.67 Streptococcus pneumoniae 1313 PRJEB2417 12 current na Best-placed reference protein set; GeneMarkS-2+ 67180 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 31 31 species Homo sapiens 1836 Streptococcus pneumoniae ERS023167 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-01-23 v1.2.4 2011-09-13T21:54:43.700 98.97 1992479 95.67 1313 2042 2017-06-24T15:34:07.000 1992479 67180 1992478 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 158 EBI 100 GCA_053203845.1 GCF_900190205.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900190205.1 type Nasophaynx 98.84 OK 39.5 Streptococcus pneumoniae 45.4964 https://www.ncbi.nlm.nih.gov/nuccore/FYLF00000000.1 2011-09-06 GCF_900190205.1 haploid ERS023167 86.87 0.31 54 2017-06-28T08:06:06 GCA_053203845.1 791289 48 6472_7#17 United Kingdom UoS2227-sc-2011-02-14-1078221; 6472_717 1313 GCA_900190205.1 Generic.1.0 86.87 SRA Sample Description GCA_900190205.1 category_na live 2017-06-22 UoS2227 PRJEB2417 Annotation submitted by SC SC 54 1078221 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYLF01 2008-01-23 UoS2227 6.10 Prokka current 54 ERS023167 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYLF01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS2227 species_match 98.84 SAMEA2521612 5 Streptococcus pneumoniae 90.7 Streptococcus pneumoniae 1313 PRJEB3084 6 current na 145341 type Streptococcus pneumoniae 2019-05-22 34 34 species Homo sapiens 2181 Streptococcus pneumoniae Streptococcus pneumoniae ERS455152 SC 2012 v1.2.4 2014-09-17T09:08:14.576 99.25 2158754 90.7 1313 2223 Streptococcus pneumoniae 2024-02-06T15:55:08.000 2161822 113661 2158752 blood Homo sapiens Streptococcus pneumoniae IPD ST10157 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900056405.2 type blood 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/FHRW00000000.2 2014-09-16T09:22:32Z GCA_900056405.2 haploid public 2012220587-sc-1946904 89.22 0.36 46 2018-03-10T19:14:18 GCA_053203845.1 856641 42 13414_2#61 2012220587-sc-1946904 USA 13414_2#61 SAMEA2521612 1313 GCF_900056405.2 Generic.1.0 89.22 SRA GCF_900056405.2 category_na live 2019-04-18T15:39:23Z GPSC45 PRJEB3084 GCF_900056405.2-RS_2026_02_02 SC SC 35 1946904 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012220587 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHRW02 2012 2245STDY5819578 2014-09-16T09:22:32Z Prokka current 35 2012220587-sc-1946904 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHRW02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-22 GPSC45 species_match 98.76 SAMEA2521612 5 Streptococcus pneumoniae 90.7 Streptococcus pneumoniae 1313 PRJEB3084 6 current na Best-placed reference protein set; GeneMarkS-2+ 145341 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-02 34 34 species Homo sapiens 2097 Streptococcus pneumoniae Streptococcus pneumoniae ERS455152 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:14.576 99.25 2158754 90.7 1313 2319 Streptococcus pneumoniae 2024-02-06T15:55:08.000 2161822 113661 2158752 blood Homo sapiens Streptococcus pneumoniae IPD 174 ST10157 EBI 100 GCA_053203845.1 GCF_900056405.2-RS_2026_02_02 SLX Streptococcus pneumoniae GCF_900056405.2 type blood 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/FHRW00000000.2 2014-09-16T09:22:32Z GCF_900056405.2 haploid public 2012220587-sc-1946904 89.22 0.36 46 2018-03-10T19:14:18 GCA_053203845.1 856641 48 13414_2#61 2012220587-sc-1946904 USA 13414_2#61 SAMEA2521612 1313 GCA_900056405.2 Generic.1.0 89.22 SRA GCA_900056405.2 category_na live 2019-04-18T15:39:23Z GPSC45 PRJEB3084 Annotation submitted by SC SC SC 35 1946904 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012220587 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHRW02 2012 GPSC45 substr. ST10157 6.10 2014-09-16T09:22:32Z Prokka current 35 2012220587-sc-1946904 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHRW02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-22 GPSC45 species_match 98.76 SAMEA1024767 7 Streptococcus pneumoniae 89.71 Streptococcus pneumoniae 1313 PRJEB2393 7 current na 97855 type Streptococcus pneumoniae 2015-07-11 34 34 species Homo sapiens 2089 Streptococcus pneumoniae Streptococcus pneumoniae ERS020410 SC 2008-10-03 v1.2.4 2012-01-20T19:52:21.440 99.12 2092730 89.71 1313 2128 2024-02-05T16:19:43.000 2092730 97855 2092716 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001096705.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 62.8385 https://www.ncbi.nlm.nih.gov/nuccore/CKOM00000000.1 2011-10-25T09:28:12Z GCA_001096705.1 haploid public SMRU900-sc-2011-01-27-1061113 88.94 0.31 45 2016-01-29T08:05:28 GCA_001457635.1 831527 39 6680_4#12 SMRU900-sc-2011-01-27-1061113 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024767 1313 GCF_001096705.1 Generic.1.0 88.94 SRA GCF_001096705.1 category_na live 2018-03-09T09:52:56Z SMRU900 PRJEB2393 GCF_001096705.1-RS_2026_01_19 SC SC 45 2018-03-09T09:52:56Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKOM01 2008-10-03 34 2011-10-25T09:28:12Z Prokka current 45 SMRU900-sc-2011-01-27-1061113 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKOM01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU900 species_match 98.73 SAMEA1024767 7 Streptococcus pneumoniae 89.71 Streptococcus pneumoniae 1313 PRJEB2393 7 current na Best-placed reference protein set; GeneMarkS-2+ 97855 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 34 34 species Homo sapiens 2014 Streptococcus pneumoniae Streptococcus pneumoniae ERS020410 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-10-03 v1.2.4 2012-01-20T19:52:21.440 99.12 2092730 89.71 1313 2224 2024-02-05T16:19:43.000 2092730 97855 2092716 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 167 EBI 100 GCA_001457635.1 GCF_001096705.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001096705.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 62.8385 https://www.ncbi.nlm.nih.gov/nuccore/CKOM00000000.1 2011-10-25T09:28:12Z GCF_001096705.1 haploid public SMRU900-sc-2011-01-27-1061113 88.94 0.31 45 2016-01-29T08:05:28 GCA_001457635.1 831527 43 6680_4#12 SMRU900-sc-2011-01-27-1061113 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024767 1313 GCA_001096705.1 Generic.1.0 88.94 SRA GCA_001096705.1 category_na live 2018-03-09T09:52:56Z SMRU900 PRJEB2393 Annotation submitted by SC SC SC 45 2018-03-09T09:52:56Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKOM01 2008-10-03 SMRU900 6.10 2011-10-25T09:28:12Z Prokka current 45 SMRU900-sc-2011-01-27-1061113 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKOM01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU900 species_match 98.73 SAMEA1029328 8 Streptococcus pneumoniae 89.95 Streptococcus pneumoniae 1313 PRJEB2480 8 current na 76302 type Streptococcus pneumoniae 2015-07-14 34 34 species Homo sapiens 2061 Streptococcus pneumoniae Streptococcus pneumoniae ERS022421 SC 2010-07-22 v1.2.4 2012-01-20T20:14:15.373 99.12 2078847 89.95 1313 2101 2024-02-06T09:02:27.000 2078857 76302 2078821 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001144445.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 62.8385 https://www.ncbi.nlm.nih.gov/nuccore/CMCI00000000.1 2012-01-16T15:10:26Z GCA_001144445.1 haploid public SMRU2911-sc-2011-01-27-1063124 88.58 0.31 59 2015-07-28T08:13:01 GCA_001457635.1 826072 40 7004_8#79 SMRU2911-sc-2011-01-27-1063124 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029328 1313 GCF_001144445.1 Generic.1.0 88.58 SRA GCF_001144445.1 category_na live 2018-03-09T11:44:18Z SMRU2911 PRJEB2480 GCF_001144445.1-RS_2026_01_13 SC SC 58 2018-03-09T11:44:18Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMCI01 2010-07-22 SMRU2911 2012-01-16T15:10:26Z Prokka current 58 SMRU2911-sc-2011-01-27-1063124 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMCI01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2911 species_match 98.76 SAMEA1029328 8 Streptococcus pneumoniae 89.95 Streptococcus pneumoniae 1313 PRJEB2480 8 current na Best-placed reference protein set; GeneMarkS-2+ 76302 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-13 34 34 species Homo sapiens 2014 Streptococcus pneumoniae Streptococcus pneumoniae ERS022421 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-07-22 v1.2.4 2012-01-20T20:14:15.373 99.12 2078847 89.95 1313 2214 2024-02-06T09:02:27.000 2078857 76302 2078821 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 157 EBI 100 GCA_001457635.1 GCF_001144445.1-RS_2026_01_13 SLX Streptococcus pneumoniae GCF_001144445.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 62.8385 https://www.ncbi.nlm.nih.gov/nuccore/CMCI00000000.1 2012-01-16T15:10:26Z GCF_001144445.1 haploid public SMRU2911-sc-2011-01-27-1063124 88.58 0.31 59 2015-07-28T08:13:01 GCA_001457635.1 826072 43 7004_8#79 SMRU2911-sc-2011-01-27-1063124 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029328 1313 GCA_001144445.1 Generic.1.0 88.58 SRA GCA_001144445.1 category_na live 2018-03-09T11:44:18Z SMRU2911 PRJEB2480 Annotation submitted by SC SC SC 58 2018-03-09T11:44:18Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMCI01 2010-07-22 SMRU2911 6.10 2012-01-16T15:10:26Z Prokka current 58 SMRU2911-sc-2011-01-27-1063124 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMCI01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2911 species_match 98.76 SAMEA1032541 10 Streptococcus pneumoniae 92.89 Streptococcus pneumoniae 1313 PRJEB2632 10 current na 73930 type Streptococcus pneumoniae 2015-07-29 34 34 species Homo sapiens 2067 Streptococcus pneumoniae Streptococcus pneumoniae ERS043868 SC 2004 v1.2.3 2012-01-20T21:35:39.516 99.25 2109934 92.89 1313 2098 2024-02-05T23:04:28.000 2109934 73930 2109934 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001092965.2 type nasopharynx 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/CNNV00000000.2 2012-01-05T09:57:46Z GCA_001092965.2 haploid public 3048-sc-2011-08-01T09:42:56Z-1249933 89.31 0.47 142 2015-09-10T08:19:37 GCA_053203845.1 836183 31 6925_1#66 3048-sc-2011-08-01T09:42:56Z-1249933 USA: Massachesetts Streptococcus pneumoniae SAMEA1032541 1313 GCF_001092965.1 Generic.1.0 89.31 SRA GCF_001092965.1 category_na live 2018-03-09T10:03:21Z R34-3048 PRJEB2632 GCF_001092965.1-RS_2025_03_31 SC SC 142 2018-03-09T10:03:21Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNNV02 2004 R34-3048 2012-01-05T09:57:46Z Velvet current 142 3048-sc-2011-08-01T09:42:56Z-1249933 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNNV02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 3048 species_match 98.74 SAMEA1032541 10 Streptococcus pneumoniae 92.89 Streptococcus pneumoniae 1313 PRJEB2632 10 current na Best-placed reference protein set; GeneMarkS-2+ 73930 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-03-31 34 34 species Homo sapiens 2017 Streptococcus pneumoniae Streptococcus pneumoniae ERS043868 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2004 v1.2.3 2012-01-20T21:35:39.516 99.25 2109934 92.89 1313 2238 2024-02-05T23:04:28.000 2109934 73930 2109934 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 170 EBI 100 GCA_053203845.1 GCF_001092965.1-RS_2025_03_31 SLX Streptococcus pneumoniae GCF_001092965.1 type nasopharynx 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/CNNV00000000.2 2012-01-05T09:57:46Z GCF_001092965.1 haploid public 3048-sc-2011-08-01T09:42:56Z-1249933 89.31 0.47 142 2015-09-10T08:19:37 GCA_053203845.1 836183 51 6925_1#66 3048-sc-2011-08-01T09:42:56Z-1249933 USA: Massachesetts Streptococcus pneumoniae SAMEA1032541 1313 GCA_001092965.2 Generic.1.0 89.31 SRA GCA_001092965.2 category_na live 2018-03-09T10:03:21Z R34-3048 PRJEB2632 Annotation submitted by SC SC SC 142 2018-03-09T10:03:21Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNNV02 2004 R34-3048 6.10 2012-01-05T09:57:46Z Velvet current 142 3048-sc-2011-08-01T09:42:56Z-1249933 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNNV02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 3048 species_match 98.74 SAMEA1024941 7 Streptococcus pneumoniae 91.41 Streptococcus pneumoniae 1313 PRJEB2393 8 current na 70560 type Streptococcus pneumoniae 2015-07-17 34 34 species Homo sapiens 2022 Streptococcus pneumoniae Streptococcus pneumoniae ERS020151 SC 2008-08-11 v1.2.4 2012-01-20T19:49:29.436 99.07 2048870 91.41 1313 2061 2024-02-05T16:26:31.000 2048938 70560 2048851 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI GCA_001457635.1 Annotation submitted by SC Streptococcus pneumoniae GCA_002889275.1 type nasopharynx 98.72 OK 40.0 Streptococcus pneumoniae 53.4217 https://www.ncbi.nlm.nih.gov/nuccore/CQYQ00000000.1 2011-12-05T16:07:35Z GCA_002889275.1 haploid public SMRU641-sc-2011-01-27-1060830 88.72 0.55 48 2015-07-28T08:12:00 GCA_001457635.1 815157 39 ASM288927v1 SMRU641-sc-2011-01-27-1060830 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024941 1313 GCF_002889275.1 Generic.1.0 88.72 SRA GCF_002889275.1 category_na live 2018-03-09T09:53:02Z SMRU641 PRJEB2393 GCF_002889275.1-RS_2025_09_04 SC SC 45 2018-03-09T09:53:02Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQYQ01 2008-08-11 SMRU641 2011-12-05T16:07:35Z current 45 SMRU641-sc-2011-01-27-1060830 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQYQ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU641 species_match 98.72 SAMEA1024941 7 Streptococcus pneumoniae 91.41 Streptococcus pneumoniae 1313 PRJEB2393 8 current na Best-placed reference protein set; GeneMarkS-2+ 70560 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 34 34 species Homo sapiens 1969 Streptococcus pneumoniae Streptococcus pneumoniae ERS020151 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-08-11 v1.2.4 2012-01-20T19:49:29.436 99.07 2048870 91.41 1313 2167 2024-02-05T16:26:31.000 2048938 70560 2048851 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 155 EBI GCA_001457635.1 GCF_002889275.1-RS_2025_09_04 Streptococcus pneumoniae GCF_002889275.1 type nasopharynx 98.72 OK 40.0 Streptococcus pneumoniae 53.4217 https://www.ncbi.nlm.nih.gov/nuccore/CQYQ00000000.1 2011-12-05T16:07:35Z GCF_002889275.1 haploid public SMRU641-sc-2011-01-27-1060830 88.72 0.55 48 2015-07-28T08:12:00 GCA_001457635.1 815157 43 ASM288927v1 SMRU641-sc-2011-01-27-1060830 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024941 1313 GCA_002889275.1 Generic.1.0 88.72 SRA GCA_002889275.1 category_na live 2018-03-09T09:53:02Z SMRU641 PRJEB2393 Annotation submitted by SC SC SC 45 2018-03-09T09:53:02Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQYQ01 2008-08-11 SMRU641 6.10 2011-12-05T16:07:35Z current 45 SMRU641-sc-2011-01-27-1060830 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQYQ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU641 species_match 98.72 SAMEA1024941 9 Streptococcus pneumoniae 91.39 Streptococcus pneumoniae 1313 PRJEB2393 9 current na 64722 type Streptococcus pneumoniae 2015-07-17 34 34 species Homo sapiens 2018 Streptococcus pneumoniae Streptococcus pneumoniae ERS020151 SC 2008-08-11 v1.2.4 2012-01-20T19:49:29.436 99.12 2047740 91.39 1313 2060 2024-02-05T16:26:31.000 2047740 64722 2047700 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001112565.1 type nasopharynx 98.73 OK 40.0 Streptococcus pneumoniae 62.8385 https://www.ncbi.nlm.nih.gov/nuccore/CRQS00000000.1 2011-12-05T16:07:35Z GCA_001112565.1 haploid public SMRU641-sc-2011-01-27-1060830 88.66 0.46 52 2015-07-28T08:12:00 GCA_001457635.1 814579 42 6791_6#17 SMRU641-sc-2011-01-27-1060830 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024941 1313 GCF_001112565.1 Generic.1.0 88.66 SRA GCF_001112565.1 category_na live 2018-03-09T09:53:02Z SMRU641 PRJEB2393 GCF_001112565.1-RS_2026_01_12 SC SC 52 2018-03-09T09:53:02Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRQS01 2008-08-11 SMRU641 2011-12-05T16:07:35Z Prokka current 52 SMRU641-sc-2011-01-27-1060830 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRQS01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU641 species_match 98.73 SAMEA1024941 9 Streptococcus pneumoniae 91.39 Streptococcus pneumoniae 1313 PRJEB2393 9 current na Best-placed reference protein set; GeneMarkS-2+ 64722 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-12 34 34 species Homo sapiens 1956 Streptococcus pneumoniae Streptococcus pneumoniae ERS020151 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-08-11 v1.2.4 2012-01-20T19:49:29.436 99.12 2047740 91.39 1313 2156 2024-02-05T16:26:31.000 2047740 64722 2047700 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 154 EBI 100 GCA_001457635.1 GCF_001112565.1-RS_2026_01_12 SLX Streptococcus pneumoniae GCF_001112565.1 type nasopharynx 98.73 OK 40.0 Streptococcus pneumoniae 62.8385 https://www.ncbi.nlm.nih.gov/nuccore/CRQS00000000.1 2011-12-05T16:07:35Z GCF_001112565.1 haploid public SMRU641-sc-2011-01-27-1060830 88.66 0.46 52 2015-07-28T08:12:00 GCA_001457635.1 814579 46 6791_6#17 SMRU641-sc-2011-01-27-1060830 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024941 1313 GCA_001112565.1 Generic.1.0 88.66 SRA GCA_001112565.1 category_na live 2018-03-09T09:53:02Z SMRU641 PRJEB2393 Annotation submitted by SC SC SC 52 2018-03-09T09:53:02Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRQS01 2008-08-11 SMRU641 6.10 2011-12-05T16:07:35Z Prokka current 52 SMRU641-sc-2011-01-27-1060830 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRQS01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU641 species_match 98.73 SAMEA1026005 10 Streptococcus pneumoniae 88.93 Streptococcus pneumoniae 1313 PRJEB2397 10 current na 66222 type Streptococcus pneumoniae 2015-07-13 34 34 species Homo sapiens 2111 Streptococcus pneumoniae Streptococcus pneumoniae ERS021529 SC 2009-10-21 v1.2.4 2012-01-20T20:04:42.783 99.12 2105835 88.93 1313 2150 2024-02-06T09:03:56.000 2105918 64493 2105824 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001135685.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 62.8385 https://www.ncbi.nlm.nih.gov/nuccore/CLDC00000000.1 2012-01-05T17:11:34Z GCA_001135685.1 haploid public SMRU2019-sc-2011-01-27-1062232 88.72 0.31 60 2015-07-28T08:12:21 GCA_001457635.1 836583 39 6899_4#3 SMRU2019-sc-2011-01-27-1062232 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026005 1313 GCF_001135685.1 Generic.1.0 88.72 SRA GCF_001135685.1 category_na live 2018-03-09T12:04:52Z SMRU2019 PRJEB2397 GCF_001135685.1-RS_2026_01_18 SC SC 59 2018-03-09T12:04:52Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLDC01 2009-10-21 SMRU2019 2012-01-05T17:11:34Z Prokka current 59 SMRU2019-sc-2011-01-27-1062232 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLDC01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2019 species_match 98.76 SAMEA1026005 10 Streptococcus pneumoniae 88.93 Streptococcus pneumoniae 1313 PRJEB2397 10 current na Best-placed reference protein set; GeneMarkS-2+ 66222 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 34 34 species Homo sapiens 2037 Streptococcus pneumoniae Streptococcus pneumoniae ERS021529 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-10-21 v1.2.4 2012-01-20T20:04:42.783 99.12 2105835 88.93 1313 2240 2024-02-06T09:03:56.000 2105918 64493 2105824 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 160 EBI 100 GCA_001457635.1 GCF_001135685.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001135685.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 62.8385 https://www.ncbi.nlm.nih.gov/nuccore/CLDC00000000.1 2012-01-05T17:11:34Z GCF_001135685.1 haploid public SMRU2019-sc-2011-01-27-1062232 88.72 0.31 60 2015-07-28T08:12:21 GCA_001457635.1 836583 43 6899_4#3 SMRU2019-sc-2011-01-27-1062232 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026005 1313 GCA_001135685.1 Generic.1.0 88.72 SRA GCA_001135685.1 category_na live 2018-03-09T12:04:52Z SMRU2019 PRJEB2397 Annotation submitted by SC SC SC 59 2018-03-09T12:04:52Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLDC01 2009-10-21 SMRU2019 6.10 2012-01-05T17:11:34Z Prokka current 59 SMRU2019-sc-2011-01-27-1062232 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLDC01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2019 species_match 98.76 SAMEA1029030 10 Streptococcus pneumoniae 91.06 Streptococcus pneumoniae 1313 PRJEB2479 11 current na 66667 type Streptococcus pneumoniae 2015-07-13 34 34 species Homo sapiens 2017 Streptococcus pneumoniae Streptococcus pneumoniae ERS021834 SC 2010-01-13 v1.2.4 2012-01-20T20:08:45.453 99.12 2050531 91.06 1313 2057 2024-02-05T16:14:02.000 2050541 63067 2050516 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001159145.1 type nasopharynx 98.75 OK 40.0 Streptococcus pneumoniae 62.8385 https://www.ncbi.nlm.nih.gov/nuccore/CLWY00000000.1 2012-01-10T10:00:00Z GCA_001159145.1 haploid public SMRU2325-sc-2011-01-27-1062538 88.45 0.46 59 2015-07-28T08:12:46 GCA_001457635.1 815311 40 6983_5#21 SMRU2325-sc-2011-01-27-1062538 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029030 1313 GCF_001159145.1 Generic.1.0 88.45 SRA GCF_001159145.1 category_na live 2018-03-09T09:52:53Z SMRU2325 PRJEB2479 GCF_001159145.1-RS_2026_01_15 SC SC 58 2018-03-09T09:52:53Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLWY01 2010-01-13 SMRU2325 2012-01-10T10:00:00Z Prokka current 58 SMRU2325-sc-2011-01-27-1062538 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLWY01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2325 species_match 98.75 SAMEA1029030 10 Streptococcus pneumoniae 91.06 Streptococcus pneumoniae 1313 PRJEB2479 11 current na Best-placed reference protein set; GeneMarkS-2+ 66667 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-15 34 34 species Homo sapiens 1971 Streptococcus pneumoniae Streptococcus pneumoniae ERS021834 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-01-13 v1.2.4 2012-01-20T20:08:45.453 99.12 2050531 91.06 1313 2176 2024-02-05T16:14:02.000 2050541 63067 2050516 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 162 EBI 100 GCA_001457635.1 GCF_001159145.1-RS_2026_01_15 SLX Streptococcus pneumoniae GCF_001159145.1 type nasopharynx 98.75 OK 40.0 Streptococcus pneumoniae 62.8385 https://www.ncbi.nlm.nih.gov/nuccore/CLWY00000000.1 2012-01-10T10:00:00Z GCF_001159145.1 haploid public SMRU2325-sc-2011-01-27-1062538 88.45 0.46 59 2015-07-28T08:12:46 GCA_001457635.1 815311 43 6983_5#21 SMRU2325-sc-2011-01-27-1062538 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029030 1313 GCA_001159145.1 Generic.1.0 88.45 SRA GCA_001159145.1 category_na live 2018-03-09T09:52:53Z SMRU2325 PRJEB2479 Annotation submitted by SC SC SC 58 2018-03-09T09:52:53Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLWY01 2010-01-13 SMRU2325 6.10 2012-01-10T10:00:00Z Prokka current 58 SMRU2325-sc-2011-01-27-1062538 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLWY01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2325 species_match 98.75 SAMEA1029142 10 Streptococcus pneumoniae 89.52 Streptococcus pneumoniae 1313 PRJEB2479 11 current na 62182 type Streptococcus pneumoniae 2015-07-13 37 37 species Homo sapiens 2002 Streptococcus pneumoniae Streptococcus pneumoniae ERS021843 SC 2010-01-15 v1.2.4 2012-01-20T20:08:51.786 98.73 2059366 89.52 1313 2044 2024-02-06T09:02:40.000 2059399 62182 2059349 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001167325.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 28.0456 https://www.ncbi.nlm.nih.gov/nuccore/CLXO00000000.1 2012-01-10T09:59:59Z GCA_001167325.1 haploid public SMRU2334-sc-2011-01-27-1062547 87.34 0.54 55 2015-07-28T08:12:46 GCA_001457635.1 813502 42 6983_6#30 SMRU2334-sc-2011-01-27-1062547 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029142 1313 GCF_001167325.1 Generic.1.0 87.34 SRA GCF_001167325.1 category_na live 2018-03-09T11:46:54Z SMRU2334 PRJEB2479 GCF_001167325.1-RS_2026_01_21 SC SC 52 2018-03-09T11:46:54Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLXO01 2010-01-15 SMRU2334 2012-01-10T09:59:59Z Prokka current 52 SMRU2334-sc-2011-01-27-1062547 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLXO01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2334 species_match 98.7 SAMEA1029142 10 Streptococcus pneumoniae 89.52 Streptococcus pneumoniae 1313 PRJEB2479 11 current na Best-placed reference protein set; GeneMarkS-2+ 62182 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-21 37 37 species Homo sapiens 1915 Streptococcus pneumoniae Streptococcus pneumoniae ERS021843 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-01-15 v1.2.4 2012-01-20T20:08:51.786 98.73 2059366 89.52 1313 2128 2024-02-06T09:02:40.000 2059399 62182 2059349 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 169 EBI 100 GCA_001457635.1 GCF_001167325.1-RS_2026_01_21 SLX Streptococcus pneumoniae GCF_001167325.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 28.0456 https://www.ncbi.nlm.nih.gov/nuccore/CLXO00000000.1 2012-01-10T09:59:59Z GCF_001167325.1 haploid public SMRU2334-sc-2011-01-27-1062547 87.34 0.54 55 2015-07-28T08:12:46 GCA_001457635.1 813502 44 6983_6#30 SMRU2334-sc-2011-01-27-1062547 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029142 1313 GCA_001167325.1 Generic.1.0 87.34 SRA GCA_001167325.1 category_na live 2018-03-09T11:46:54Z SMRU2334 PRJEB2479 Annotation submitted by SC SC SC 52 2018-03-09T11:46:54Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLXO01 2010-01-15 SMRU2334 6.10 2012-01-10T09:59:59Z Prokka current 52 SMRU2334-sc-2011-01-27-1062547 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLXO01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2334 species_match 98.7 SAMEA1025695 11 Streptococcus pneumoniae 88.66 Streptococcus pneumoniae 1313 PRJEB2397 12 current na 61130 type Streptococcus pneumoniae 2015-07-13 34 34 species Homo sapiens 2128 Streptococcus pneumoniae Streptococcus pneumoniae ERS021403 SC 2009-09-07 v1.2.4 2012-01-20T20:03:08.690 99.05 2143361 88.66 1313 2167 2024-02-05T16:22:54.000 2143406 60685 2143354 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001089965.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 51.1363 https://www.ncbi.nlm.nih.gov/nuccore/CKUC00000000.1 2011-12-05T16:07:36Z GCA_001089965.1 haploid public SMRU1893-sc-2011-01-27-1062106 86.6 2.34 54 2015-07-28T08:12:07 GCA_053203845.1 848934 39 6823_2#21 SMRU1893-sc-2011-01-27-1062106 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025695 1313 GCF_001089965.1 Generic.1.0 86.6 SRA GCF_001089965.1 category_na live 2018-03-09T09:52:59Z SMRU1893 PRJEB2397 GCF_001089965.1-RS_2025_08_18 SC SC 52 2018-03-09T09:52:59Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKUC01 2009-09-07 SMRU1893 2011-12-05T16:07:36Z Prokka current 52 SMRU1893-sc-2011-01-27-1062106 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKUC01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU1893 species_match 98.73 SAMEA1025695 11 Streptococcus pneumoniae 88.66 Streptococcus pneumoniae 1313 PRJEB2397 12 current na Best-placed reference protein set; GeneMarkS-2+ 61130 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-18 34 34 species Homo sapiens 2060 Streptococcus pneumoniae Streptococcus pneumoniae ERS021403 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-09-07 v1.2.4 2012-01-20T20:03:08.690 99.05 2143361 88.66 1313 2265 2024-02-05T16:22:54.000 2143406 60685 2143354 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 163 EBI 100 GCA_053203845.1 GCF_001089965.1-RS_2025_08_18 SLX Streptococcus pneumoniae GCF_001089965.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 51.1363 https://www.ncbi.nlm.nih.gov/nuccore/CKUC00000000.1 2011-12-05T16:07:36Z GCF_001089965.1 haploid public SMRU1893-sc-2011-01-27-1062106 86.6 2.34 54 2015-07-28T08:12:07 GCA_053203845.1 848934 42 6823_2#21 SMRU1893-sc-2011-01-27-1062106 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025695 1313 GCA_001089965.1 Generic.1.0 86.6 SRA GCA_001089965.1 category_na live 2018-03-09T09:52:59Z SMRU1893 PRJEB2397 Annotation submitted by SC SC SC 52 2018-03-09T09:52:59Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKUC01 2009-09-07 SMRU1893 6.10 2011-12-05T16:07:36Z Prokka current 52 SMRU1893-sc-2011-01-27-1062106 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKUC01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU1893 species_match 98.73 SAMEA2203380 1 Streptococcus pneumoniae 89.91 Streptococcus pneumoniae 1313 PRJEB31141 5 current na 2176450 type Streptococcus pneumoniae 2019-02-20 38 38 species Homo sapiens 2163 Streptococcus pneumoniae Streptococcus pneumoniae ERS355884 WTSI 1998 v1.2.4 2014-05-06T18:11:10.536 99.31 2174855 89.91 1313 2212 Streptococcus pneumoniae 2024-02-06T15:53:19.000 2176450 146158 2174855 Venous Blood Homo sapiens Streptococcus pneumoniae IPD 1 ST310 EBI 238 GCA_053203845.1 Annotation submitted by WTSI SLX Streptococcus pneumoniae GCA_900692605.1 type Venous Blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 2014-02-18T09:20:01Z GCA_900692605.1 haploid public PNI0242-sc-2013-10-09T11:41:51Z-1708895 89.12 0.68 26 2015-08-10T19:14:43 GCA_053203845.1 859186 49 11658_1#82-2 PNI0242-sc-2013-10-09T11:41:51Z-1708895 Gambia 11658_1#82 SAMEA2203380 1313 GCF_900692605.1 Generic.1.0 89.12 SRA GCF_900692605.1 category_na live 2019-04-18T15:38:59Z GPSC38 PRJEB31141 GCF_900692605.1-RS_2026_02_12 WTSI SC 1 1708895 2019-04-18T15:38:59Z 2014-02-18T00:00:00.000 PNI0242 1998 2245STDY5605669 2014-02-18T09:20:01Z velvet current 1 PNI0242-sc-2013-10-09T11:41:51Z-1708895 Generic Reference genome for Global Pneumococcal Sequence (GPS ) project Chromosome SOURCE_DATABASE_GENBANK Gambia 2019-02-20 GPSC38 species_match 98.84 SAMEA2203380 1 Streptococcus pneumoniae 89.91 Streptococcus pneumoniae 1313 PRJEB31141 5 current na Best-placed reference protein set; GeneMarkS-2+ 2176450 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-12 38 38 species Homo sapiens 2031 Streptococcus pneumoniae Streptococcus pneumoniae ERS355884 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 1998 v1.2.4 2014-05-06T18:11:10.536 99.31 2174855 89.91 1313 2282 Streptococcus pneumoniae 2024-02-06T15:53:19.000 2176450 146158 2174855 Venous Blood Homo sapiens Streptococcus pneumoniae IPD 200 1 ST310 EBI 238 GCA_053203845.1 GCF_900692605.1-RS_2026_02_12 SLX Streptococcus pneumoniae GCF_900692605.1 type Venous Blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 2014-02-18T09:20:01Z GCF_900692605.1 haploid public PNI0242-sc-2013-10-09T11:41:51Z-1708895 89.12 0.68 26 2015-08-10T19:14:43 GCA_053203845.1 859186 51 11658_1#82-2 PNI0242-sc-2013-10-09T11:41:51Z-1708895 Gambia 11658_1#82 SAMEA2203380 1313 GCA_900692605.1 Generic.1.0 89.12 SRA GCA_900692605.1 category_na live 2019-04-18T15:38:59Z GPSC38 PRJEB31141 Annotation submitted by WTSI WTSI SC 1 1708895 2019-04-18T15:38:59Z 2014-02-18T00:00:00.000 PNI0242 1998 GPSC38 substr. ST310 6.10 2014-02-18T09:20:01Z velvet current 1 PNI0242-sc-2013-10-09T11:41:51Z-1708895 Generic Reference genome for Global Pneumococcal Sequence (GPS ) project Chromosome SOURCE_DATABASE_REFSEQ Gambia 2019-02-20 GPSC38 species_match 98.84 SAMEA2521542 10 Streptococcus pneumoniae 90.3 Streptococcus pneumoniae 1313 PRJEB3084 10 current na 66203 type Streptococcus pneumoniae 2019-05-23 38 38 species Homo sapiens 2081 Streptococcus pneumoniae Streptococcus pneumoniae ERS455082 SC 2012 v1.2.4 2014-09-17T09:08:12.320 99.31 2111030 90.3 1313 2127 Streptococcus pneumoniae 2024-02-06T15:55:05.000 2111675 66203 2111030 blood Homo sapiens Streptococcus pneumoniae IPD ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900049055.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHPT00000000.2 2014-09-16T09:22:31Z GCA_900049055.2 haploid public 2013208509-sc-1946833 86.87 0.62 66 2018-03-10T19:14:15 GCA_053203845.1 832748 46 13414_1#86 2013208509-sc-1946833 USA 13414_1#86 SAMEA2521542 1313 GCF_900049055.2 Generic.1.0 86.87 SRA GCF_900049055.2 category_na live 2019-04-18T15:39:23Z GPSC38 PRJEB3084 GCF_900049055.2-RS_2026_01_27 SC SC 62 1946833 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013208509 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPT02 2012 2245STDY5819507 2014-09-16T09:22:31Z Prokka current 62 2013208509-sc-1946833 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPT02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-23 GPSC38 species_match 98.87 SAMEA2521542 10 Streptococcus pneumoniae 90.3 Streptococcus pneumoniae 1313 PRJEB3084 10 current na Best-placed reference protein set; GeneMarkS-2+ 66203 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-27 38 38 species Homo sapiens 1954 Streptococcus pneumoniae Streptococcus pneumoniae ERS455082 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:12.320 99.31 2111030 90.3 1313 2194 Streptococcus pneumoniae 2024-02-06T15:55:05.000 2111675 66203 2111030 blood Homo sapiens Streptococcus pneumoniae IPD 188 ST393 EBI 100 GCA_053203845.1 GCF_900049055.2-RS_2026_01_27 SLX Streptococcus pneumoniae GCF_900049055.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHPT00000000.2 2014-09-16T09:22:31Z GCF_900049055.2 haploid public 2013208509-sc-1946833 86.87 0.62 66 2018-03-10T19:14:15 GCA_053203845.1 832748 52 13414_1#86 2013208509-sc-1946833 USA 13414_1#86 SAMEA2521542 1313 GCA_900049055.2 Generic.1.0 86.87 SRA GCA_900049055.2 category_na live 2019-04-18T15:39:23Z GPSC38 PRJEB3084 Annotation submitted by SC SC SC 62 1946833 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013208509 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPT02 2012 GPSC38 substr. ST393 6.10 2014-09-16T09:22:31Z Prokka current 62 2013208509-sc-1946833 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPT02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-23 GPSC38 species_match 98.87 SAMEA2238613 9 Streptococcus pneumoniae 88.87 Streptococcus pneumoniae 1313 PRJEB4909 13 current na 67510 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2139 Streptococcus pneumoniae Streptococcus pneumoniae ERS367425 SC 2006/2012 v1.2.4 2014-05-07T08:34:43.596 99.31 2153396 88.87 1313 2185 2024-02-06T05:14:12.000 2156355 55443 2153392 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900020085.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FEDA00000000.1 2014-03-18T09:35:30Z GCA_900020085.1 haploid public 2090243-sc-2013-11-05T11:59:26Z-1749974 87.21 0.62 75 2015-08-10T19:24:19 GCA_053203845.1 849983 46 11861_1#51 2090243-sc-2013-11-05T11:59:26Z-1749974 Netherlands 11861_1#51 SAMEA2238613 1313 GCF_900020085.1 Generic.1.0 87.21 SRA GCF_900020085.1 category_na live 2018-03-09T10:28:48Z 2842STDY5643985 PRJEB4909 GCF_900020085.1-RS_2025_09_28 SC SC 63 1749974 2018-03-09T10:28:48Z 2014-03-18T00:00:00.000 2090243 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEDA01 2006/2012 2842STDY5643985 2014-03-18T09:35:30Z Prokka current 63 2090243-sc-2013-11-05T11:59:26Z-1749974 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEDA01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643985 species_match 98.85 SAMEA2238613 9 Streptococcus pneumoniae 88.87 Streptococcus pneumoniae 1313 PRJEB4909 13 current na Best-placed reference protein set; GeneMarkS-2+ 67510 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 2020 Streptococcus pneumoniae Streptococcus pneumoniae ERS367425 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:43.596 99.31 2153396 88.87 1313 2258 2024-02-06T05:14:12.000 2156355 55443 2153392 CSF Homo sapiens Streptococcus pneumoniae Disease 187 EBI 100 GCA_053203845.1 GCF_900020085.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900020085.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FEDA00000000.1 2014-03-18T09:35:30Z GCF_900020085.1 haploid public 2090243-sc-2013-11-05T11:59:26Z-1749974 87.21 0.62 75 2015-08-10T19:24:19 GCA_053203845.1 849983 51 11861_1#51 2090243-sc-2013-11-05T11:59:26Z-1749974 Netherlands 11861_1#51 SAMEA2238613 1313 GCA_900020085.1 Generic.1.0 87.21 SRA GCA_900020085.1 category_na live 2018-03-09T10:28:48Z 2842STDY5643985 PRJEB4909 Annotation submitted by SC SC SC 63 1749974 2018-03-09T10:28:48Z 2014-03-18T00:00:00.000 2090243 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEDA01 2006/2012 2842STDY5643985 6.10 2014-03-18T09:35:30Z Prokka current 63 2090243-sc-2013-11-05T11:59:26Z-1749974 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEDA01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643985 species_match 98.85 SAMEA2521548 10 Streptococcus pneumoniae 88.63 Streptococcus pneumoniae 1313 PRJEB3084 12 current na 55889 type Streptococcus pneumoniae 2019-05-27 38 38 species Homo sapiens 2106 Streptococcus pneumoniae Streptococcus pneumoniae ERS455088 SC 2012 v1.2.4 2014-09-17T09:08:12.520 99.31 2146611 88.63 1313 2152 Streptococcus pneumoniae 2024-02-06T15:55:05.000 2148954 54852 2146609 blood Homo sapiens Streptococcus pneumoniae IPD ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900054515.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHPZ00000000.2 2014-09-16T09:22:32Z GCA_900054515.2 haploid public 2013212823-sc-1946839 86.7 0.62 73 2015-08-10T19:57:07 GCA_053203845.1 845909 46 13414_1#92 2013212823-sc-1946839 USA 13414_1#92 SAMEA2521548 1313 GCF_900054515.2 Generic.1.0 86.7 SRA GCF_900054515.2 category_na live 2019-04-18T15:39:23Z GPSC38 PRJEB3084 GCF_900054515.2-RS_2026_01_31 SC SC 65 1946839 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013212823 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPZ02 2012 2245STDY5819513 2014-09-16T09:22:32Z Prokka current 65 2013212823-sc-1946839 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPZ02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-27 GPSC38 species_match 98.87 SAMEA2521548 10 Streptococcus pneumoniae 88.63 Streptococcus pneumoniae 1313 PRJEB3084 12 current na Best-placed reference protein set; GeneMarkS-2+ 55889 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 38 38 species Homo sapiens 1976 Streptococcus pneumoniae Streptococcus pneumoniae ERS455088 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:12.520 99.31 2146611 88.63 1313 2220 Streptococcus pneumoniae 2024-02-06T15:55:05.000 2148954 54852 2146609 blood Homo sapiens Streptococcus pneumoniae IPD 192 ST393 EBI 100 GCA_053203845.1 GCF_900054515.2-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_900054515.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHPZ00000000.2 2014-09-16T09:22:32Z GCF_900054515.2 haploid public 2013212823-sc-1946839 86.7 0.62 73 2015-08-10T19:57:07 GCA_053203845.1 845909 52 13414_1#92 2013212823-sc-1946839 USA 13414_1#92 SAMEA2521548 1313 GCA_900054515.2 Generic.1.0 86.7 SRA GCA_900054515.2 category_na live 2019-04-18T15:39:23Z GPSC38 PRJEB3084 Annotation submitted by SC SC SC 65 1946839 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013212823 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPZ02 2012 GPSC38 substr. ST393 6.10 2014-09-16T09:22:32Z Prokka current 65 2013212823-sc-1946839 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPZ02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-27 GPSC38 species_match 98.87 SAMEA2521521 11 Streptococcus pneumoniae 90.37 Streptococcus pneumoniae 1313 PRJEB3084 12 current na 54393 type Streptococcus pneumoniae 2019-05-24 38 38 species Homo sapiens 2075 Streptococcus pneumoniae Streptococcus pneumoniae ERS455061 SC 2012 v1.2.4 2014-09-17T09:08:11.606 99.31 2108726 90.37 1313 2122 Streptococcus pneumoniae 2024-02-06T15:55:04.000 2109342 54393 2108726 blood Homo sapiens Streptococcus pneumoniae IPD ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900052435.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHPD00000000.2 2014-09-16T09:22:33Z GCA_900052435.2 haploid public 2012224895-sc-1946812 86.85 0.62 74 2018-03-10T19:14:15 GCA_053203845.1 831817 47 13414_1#65 2012224895-sc-1946812 USA 13414_1#65 SAMEA2521521 1313 GCF_900052435.2 Generic.1.0 86.85 SRA GCF_900052435.2 category_na live 2019-04-18T15:39:22Z GPSC38 PRJEB3084 GCF_900052435.2-RS_2026_02_01 SC SC 69 1946812 2019-04-18T15:39:22Z 2014-09-16T00:00:00.000 2012224895 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPD02 2012 2245STDY5819486 2014-09-16T09:22:33Z Prokka current 69 2012224895-sc-1946812 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPD02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-24 GPSC38 species_match 98.87 SAMEA2521521 11 Streptococcus pneumoniae 90.37 Streptococcus pneumoniae 1313 PRJEB3084 12 current na Best-placed reference protein set; GeneMarkS-2+ 54393 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 38 38 species Homo sapiens 1951 Streptococcus pneumoniae Streptococcus pneumoniae ERS455061 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:11.606 99.31 2108726 90.37 1313 2213 Streptococcus pneumoniae 2024-02-06T15:55:04.000 2109342 54393 2108726 blood Homo sapiens Streptococcus pneumoniae IPD 209 ST393 EBI 100 GCA_053203845.1 GCF_900052435.2-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_900052435.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHPD00000000.2 2014-09-16T09:22:33Z GCF_900052435.2 haploid public 2012224895-sc-1946812 86.85 0.62 74 2018-03-10T19:14:15 GCA_053203845.1 831817 53 13414_1#65 2012224895-sc-1946812 USA 13414_1#65 SAMEA2521521 1313 GCA_900052435.2 Generic.1.0 86.85 SRA GCA_900052435.2 category_na live 2019-04-18T15:39:22Z GPSC38 PRJEB3084 Annotation submitted by SC SC SC 69 1946812 2019-04-18T15:39:22Z 2014-09-16T00:00:00.000 2012224895 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPD02 2012 GPSC38 substr. ST393 6.10 2014-09-16T09:22:33Z Prokka current 69 2012224895-sc-1946812 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPD02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-24 GPSC38 species_match 98.87 SAMEA2336015 11 Streptococcus pneumoniae 88.85 Streptococcus pneumoniae 1313 PRJEB3084 15 current na 64584 type Streptococcus pneumoniae 2019-05-27 38 38 species Homo sapiens 2070 Streptococcus pneumoniae Streptococcus pneumoniae ERS394209 SC 2009 v1.2.4 2014-05-20T08:07:33.310 99.1 2120261 88.85 1313 2118 Streptococcus pneumoniae 2024-02-06T15:54:55.000 2123404 49655 2120259 blood Homo sapiens Streptococcus pneumoniae IPD ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900051415.2 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FHLE00000000.2 2014-05-19T10:21:07Z GCA_900051415.2 haploid public 2010208354-sc-1810943 85.85 0.62 77 2015-08-10T19:29:23 GCA_053203845.1 839772 48 12291_4#83 2010208354-sc-1810943 USA 12291_4#83 SAMEA2336015 1313 GCF_900051415.2 Generic.1.0 85.85 SRA GCF_900051415.2 category_na live 2019-04-18T15:39:20Z GPSC38 PRJEB3084 GCF_900051415.2-RS_2026_02_01 SC SC 64 1810943 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2010208354 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHLE02 2009 2245STDY5699108 2014-05-19T10:21:07Z Prokka current 64 2010208354-sc-1810943 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHLE02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-27 GPSC38 species_match 98.86 SAMEA2336015 11 Streptococcus pneumoniae 88.85 Streptococcus pneumoniae 1313 PRJEB3084 15 current na Best-placed reference protein set; GeneMarkS-2+ 64584 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 38 38 species Homo sapiens 1948 Streptococcus pneumoniae Streptococcus pneumoniae ERS394209 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-05-20T08:07:33.310 99.1 2120261 88.85 1313 2197 Streptococcus pneumoniae 2024-02-06T15:54:55.000 2123404 49655 2120259 blood Homo sapiens Streptococcus pneumoniae IPD 196 ST393 EBI 100 GCA_053203845.1 GCF_900051415.2-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_900051415.2 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FHLE00000000.2 2014-05-19T10:21:07Z GCF_900051415.2 haploid public 2010208354-sc-1810943 85.85 0.62 77 2015-08-10T19:29:23 GCA_053203845.1 839772 53 12291_4#83 2010208354-sc-1810943 USA 12291_4#83 SAMEA2336015 1313 GCA_900051415.2 Generic.1.0 85.85 SRA GCA_900051415.2 category_na live 2019-04-18T15:39:20Z GPSC38 PRJEB3084 Annotation submitted by SC SC SC 64 1810943 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2010208354 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHLE02 2009 GPSC38 substr. ST393 6.10 2014-05-19T10:21:07Z Prokka current 64 2010208354-sc-1810943 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHLE02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-27 GPSC38 species_match 98.86 SAMEA1032420 14 Streptococcus pneumoniae 90.05 Streptococcus pneumoniae 1313 PRJEB2632 14 current na 49022 type Streptococcus pneumoniae 2015-07-29 38 38 species Homo sapiens 2051 Streptococcus pneumoniae Streptococcus pneumoniae ERS043885 SC 2004 v1.2.3 2012-01-20T21:35:58.640 99.31 2115376 90.05 1313 2082 2024-02-05T17:29:07.000 2115376 49022 2115376 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001173025.2 type nasopharynx 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CNOJ00000000.2 2012-01-05T09:57:46Z GCA_001173025.2 haploid public 3065-sc-2011-08-01T09:43:07Z-1249950 86.8 0.62 199 2015-09-10T08:19:37 GCA_053203845.1 834853 31 6925_2#84 3065-sc-2011-08-01T09:43:07Z-1249950 USA: Massachesetts Streptococcus pneumoniae SAMEA1032420 1313 GCF_001173025.1 Generic.1.0 86.8 SRA GCF_001173025.1 category_na live 2018-03-09T09:53:49Z R34-3065 PRJEB2632 GCF_001173025.1-RS_2025_03_31 SC SC 199 2018-03-09T09:53:49Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNOJ02 2004 R34-3065 2012-01-05T09:57:46Z Velvet current 199 3065-sc-2011-08-01T09:43:07Z-1249950 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNOJ02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 3065 species_match 98.87 SAMEA1032420 14 Streptococcus pneumoniae 90.05 Streptococcus pneumoniae 1313 PRJEB2632 14 current na Best-placed reference protein set; GeneMarkS-2+ 49022 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-03-31 38 38 species Homo sapiens 1971 Streptococcus pneumoniae Streptococcus pneumoniae ERS043885 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2004 v1.2.3 2012-01-20T21:35:58.640 99.31 2115376 90.05 1313 2204 2024-02-05T17:29:07.000 2115376 49022 2115376 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 182 EBI 100 GCA_053203845.1 GCF_001173025.1-RS_2025_03_31 SLX Streptococcus pneumoniae GCF_001173025.1 type nasopharynx 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CNOJ00000000.2 2012-01-05T09:57:46Z GCF_001173025.1 haploid public 3065-sc-2011-08-01T09:43:07Z-1249950 86.8 0.62 199 2015-09-10T08:19:37 GCA_053203845.1 834853 51 6925_2#84 3065-sc-2011-08-01T09:43:07Z-1249950 USA: Massachesetts Streptococcus pneumoniae SAMEA1032420 1313 GCA_001173025.2 Generic.1.0 86.8 SRA GCA_001173025.2 category_na live 2018-03-09T09:53:49Z R34-3065 PRJEB2632 Annotation submitted by SC SC SC 199 2018-03-09T09:53:49Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNOJ02 2004 R34-3065 6.10 2012-01-05T09:57:46Z Velvet current 199 3065-sc-2011-08-01T09:43:07Z-1249950 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNOJ02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 3065 species_match 98.87 SAMEA2238502 15 Streptococcus pneumoniae 87.78 Streptococcus pneumoniae 1313 PRJEB4909 16 current na 49266 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2188 Streptococcus pneumoniae Streptococcus pneumoniae ERS367314 SC 2006/2012 v1.2.4 2014-05-07T08:34:34.096 99.15 2213675 87.78 1313 2235 2024-02-06T05:08:52.000 2216415 46349 2213671 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900020065.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FEAN00000000.1 2014-03-18T09:35:30Z GCA_900020065.1 haploid public 2080304-sc-2013-11-05T11:57:30Z-1749862 88.55 0.62 94 2015-08-10T19:24:15 GCA_053203845.1 874440 47 11860_6#36 2080304-sc-2013-11-05T11:57:30Z-1749862 Netherlands 11860_6#36 SAMEA2238502 1313 GCF_900020065.1 Generic.1.0 88.55 SRA GCF_900020065.1 category_na live 2018-03-09T10:28:12Z 2842STDY5643873 PRJEB4909 GCF_900020065.1-RS_2026_01_25 SC SC 83 1749862 2018-03-09T10:28:12Z 2014-03-18T00:00:00.000 2080304 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEAN01 2006/2012 2842STDY5643873 2014-03-18T09:35:30Z Prokka current 83 2080304-sc-2013-11-05T11:57:30Z-1749862 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEAN01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643873 species_match 98.83 SAMEA2238502 15 Streptococcus pneumoniae 87.78 Streptococcus pneumoniae 1313 PRJEB4909 16 current na Best-placed reference protein set; GeneMarkS-2+ 49266 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 2072 Streptococcus pneumoniae Streptococcus pneumoniae ERS367314 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:34.096 99.15 2213675 87.78 1313 2331 2024-02-06T05:08:52.000 2216415 46349 2213671 CSF Homo sapiens Streptococcus pneumoniae Disease 206 EBI 100 GCA_053203845.1 GCF_900020065.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900020065.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FEAN00000000.1 2014-03-18T09:35:30Z GCF_900020065.1 haploid public 2080304-sc-2013-11-05T11:57:30Z-1749862 88.55 0.62 94 2015-08-10T19:24:15 GCA_053203845.1 874440 53 11860_6#36 2080304-sc-2013-11-05T11:57:30Z-1749862 Netherlands 11860_6#36 SAMEA2238502 1313 GCA_900020065.1 Generic.1.0 88.55 SRA GCA_900020065.1 category_na live 2018-03-09T10:28:12Z 2842STDY5643873 PRJEB4909 Annotation submitted by SC SC SC 83 1749862 2018-03-09T10:28:12Z 2014-03-18T00:00:00.000 2080304 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEAN01 2006/2012 2842STDY5643873 6.10 2014-03-18T09:35:30Z Prokka current 83 2080304-sc-2013-11-05T11:57:30Z-1749862 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEAN01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643873 species_match 98.83 SAMEA2238326 14 Streptococcus pneumoniae 87.68 Streptococcus pneumoniae 1313 PRJEB4909 16 current na 48831 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2170 Streptococcus pneumoniae Streptococcus pneumoniae ERS367138 SC 2006/2012 v1.2.4 2014-05-07T08:34:15.840 99.06 2181680 87.68 1313 2215 2024-02-06T05:13:55.000 2183241 45469 2181679 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900021595.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/FDWL00000000.1 2014-03-18T09:35:29Z GCA_900021595.1 haploid public 2061564-sc-2013-11-05T11:54:38Z-1749684 87.17 0.62 97 2015-08-10T19:24:07 GCA_053203845.1 860641 45 11860_4#53 2061564-sc-2013-11-05T11:54:38Z-1749684 Netherlands 11860_4#53 SAMEA2238326 1313 GCF_900021595.1 Generic.1.0 87.17 SRA GCF_900021595.1 category_na live 2018-03-09T10:28:47Z 2842STDY5643695 PRJEB4909 GCF_900021595.1-RS_2025_12_28 SC SC 89 1749684 2018-03-09T10:28:47Z 2014-03-18T00:00:00.000 2061564 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDWL01 2006/2012 2842STDY5643695 2014-03-18T09:35:29Z Prokka current 89 2061564-sc-2013-11-05T11:54:38Z-1749684 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDWL01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643695 species_match 98.84 SAMEA2238326 14 Streptococcus pneumoniae 87.68 Streptococcus pneumoniae 1313 PRJEB4909 16 current na Best-placed reference protein set; GeneMarkS-2+ 48831 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-28 species Homo sapiens 2068 Streptococcus pneumoniae Streptococcus pneumoniae ERS367138 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:15.840 99.06 2181680 87.68 1313 2316 2024-02-06T05:13:55.000 2183241 45469 2181679 CSF Homo sapiens Streptococcus pneumoniae Disease 198 EBI 100 GCA_053203845.1 GCF_900021595.1-RS_2025_12_28 SLX Streptococcus pneumoniae GCF_900021595.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/FDWL00000000.1 2014-03-18T09:35:29Z GCF_900021595.1 haploid public 2061564-sc-2013-11-05T11:54:38Z-1749684 87.17 0.62 97 2015-08-10T19:24:07 GCA_053203845.1 860641 50 11860_4#53 2061564-sc-2013-11-05T11:54:38Z-1749684 Netherlands 11860_4#53 SAMEA2238326 1313 GCA_900021595.1 Generic.1.0 87.17 SRA GCA_900021595.1 category_na live 2018-03-09T10:28:47Z 2842STDY5643695 PRJEB4909 Annotation submitted by SC SC SC 89 1749684 2018-03-09T10:28:47Z 2014-03-18T00:00:00.000 2061564 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDWL01 2006/2012 2842STDY5643695 6.10 2014-03-18T09:35:29Z Prokka current 89 2061564-sc-2013-11-05T11:54:38Z-1749684 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDWL01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643695 species_match 98.84 SAMEA1032506 14 Streptococcus pneumoniae 90.03 Streptococcus pneumoniae 1313 PRJEB2632 14 current na 45392 type Streptococcus pneumoniae 2015-07-29 38 38 species Homo sapiens 2047 Streptococcus pneumoniae Streptococcus pneumoniae ERS043866 SC 2004 v1.2.3 2012-01-20T21:35:37.640 99.31 2111517 90.03 1313 2076 2024-02-05T23:04:26.000 2111517 45392 2111517 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001102445.2 type nasopharynx 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CNNN00000000.2 2012-01-05T09:57:46Z GCA_001102445.2 haploid public 3046-sc-2011-08-01T09:42:54Z-1249931 86.63 0.62 235 2015-09-10T08:19:37 GCA_053203845.1 833414 29 6925_1#64 3046-sc-2011-08-01T09:42:54Z-1249931 USA: Massachesetts Streptococcus pneumoniae SAMEA1032506 1313 GCF_001102445.1 Generic.1.0 86.63 SRA GCF_001102445.1 category_na live 2018-03-09T10:03:21Z R34-3046 PRJEB2632 GCF_001102445.1-RS_2025_03_31 SC SC 235 2018-03-09T10:03:21Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNNN02 2004 R34-3046 2012-01-05T09:57:46Z Velvet current 235 3046-sc-2011-08-01T09:42:54Z-1249931 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNNN02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 3046 species_match 98.87 SAMEA1032506 14 Streptococcus pneumoniae 90.03 Streptococcus pneumoniae 1313 PRJEB2632 14 current na Best-placed reference protein set; GeneMarkS-2+ 45392 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-03-31 38 38 species Homo sapiens 1962 Streptococcus pneumoniae Streptococcus pneumoniae ERS043866 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2004 v1.2.3 2012-01-20T21:35:37.640 99.31 2111517 90.03 1313 2191 2024-02-05T23:04:26.000 2111517 45392 2111517 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 182 EBI 100 GCA_053203845.1 GCF_001102445.1-RS_2025_03_31 SLX Streptococcus pneumoniae GCF_001102445.1 type nasopharynx 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CNNN00000000.2 2012-01-05T09:57:46Z GCF_001102445.1 haploid public 3046-sc-2011-08-01T09:42:54Z-1249931 86.63 0.62 235 2015-09-10T08:19:37 GCA_053203845.1 833414 47 6925_1#64 3046-sc-2011-08-01T09:42:54Z-1249931 USA: Massachesetts Streptococcus pneumoniae SAMEA1032506 1313 GCA_001102445.2 Generic.1.0 86.63 SRA GCA_001102445.2 category_na live 2018-03-09T10:03:21Z R34-3046 PRJEB2632 Annotation submitted by SC SC SC 235 2018-03-09T10:03:21Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNNN02 2004 R34-3046 6.10 2012-01-05T09:57:46Z Velvet current 235 3046-sc-2011-08-01T09:42:54Z-1249931 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNNN02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 3046 species_match 98.87 SAMEA3389940 1 Streptococcus pneumoniae 90.49 Streptococcus pneumoniae 1313 PRJEB31141 4 current na 2102932 type Streptococcus pneumoniae 2019-02-20 38 38 species Homo sapiens 2079 Streptococcus pneumoniae Streptococcus pneumoniae ERS726043 WTSI 2011 v1.2.4 2016-01-13T08:11:18.833 99.2 2101408 90.49 1313 2129 Streptococcus pneumoniae 2024-02-06T15:59:51.000 2102932 149737 2101408 blood Homo sapiens Streptococcus pneumoniae bacteraemia 1 ST6103 EBI 117 GCA_053203845.1 Annotation submitted by WTSI SLX Streptococcus pneumoniae GCA_900692965.1 type blood 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae 69.3105 2016-01-12T09:01:08Z GCA_900692965.1 haploid public GPS_MW_1012887-sc-2296186 86.65 0.94 14 2017-10-07T09:05:53 GCA_053203845.1 828912 50 17966_5#56-2 GPS_MW_1012887-sc-2296186 Malawi 17966_5#56 SAMEA3389940 1313 GCF_900692965.1 Generic.1.0 86.65 SRA GCF_900692965.1 category_na live 2019-04-18T16:01:32Z GPSC117 PRJEB31141 GCF_900692965.1-RS_2026_02_12 WTSI SC 1 2296186 2019-04-18T16:01:32Z 2016-01-12T00:00:00.000 GPS_MW_1012887 2011 2245STDY6106372 2016-01-12T09:01:08Z velvet current 1 GPS_MW_1012887-sc-2296186 Generic Reference genome for Global Pneumococcal Sequence (GPS ) project Chromosome SOURCE_DATABASE_GENBANK Malawi 2019-02-20 GPSC117 species_match 98.74 SAMEA3389940 1 Streptococcus pneumoniae 90.49 Streptococcus pneumoniae 1313 PRJEB31141 4 current na Best-placed reference protein set; GeneMarkS-2+ 2102932 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-12 38 38 species Homo sapiens 1927 Streptococcus pneumoniae Streptococcus pneumoniae ERS726043 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2011 v1.2.4 2016-01-13T08:11:18.833 99.2 2101408 90.49 1313 2192 Streptococcus pneumoniae 2024-02-06T15:59:51.000 2102932 149737 2101408 blood Homo sapiens Streptococcus pneumoniae bacteraemia 214 1 ST6103 EBI 117 GCA_053203845.1 GCF_900692965.1-RS_2026_02_12 SLX Streptococcus pneumoniae GCF_900692965.1 type blood 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae 69.3105 2016-01-12T09:01:08Z GCF_900692965.1 haploid public GPS_MW_1012887-sc-2296186 86.65 0.94 14 2017-10-07T09:05:53 GCA_053203845.1 828912 51 17966_5#56-2 GPS_MW_1012887-sc-2296186 Malawi 17966_5#56 SAMEA3389940 1313 GCA_900692965.1 Generic.1.0 86.65 SRA GCA_900692965.1 category_na live 2019-04-18T16:01:32Z GPSC117 PRJEB31141 Annotation submitted by WTSI WTSI SC 1 2296186 2019-04-18T16:01:32Z 2016-01-12T00:00:00.000 GPS_MW_1012887 2011 GPSC117 substr. ST6103 6.10 2016-01-12T09:01:08Z velvet current 1 GPS_MW_1012887-sc-2296186 Generic Reference genome for Global Pneumococcal Sequence (GPS ) project Chromosome SOURCE_DATABASE_REFSEQ Malawi 2019-02-20 GPSC117 species_match 98.74 SAMEA1026388 11 Streptococcus pneumoniae 90.18 Streptococcus pneumoniae 1313 PRJEB2417 13 current na 62730 type Streptococcus pneumoniae 2017-06-28 38 38 species Homo sapiens 2078 Streptococcus pneumoniae ERS023261 SC 2009-01-27 v1.2.4 2011-09-23T19:13:47.063 99.31 2111950 90.18 1313 2120 2017-06-24T15:40:59.000 2115556 55881 2111948 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900191125.1 type Nasophaynx 98.84 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FYPA00000000.1 2011-09-20 GCA_900191125.1 haploid ERS023261 86.79 0.62 100 2017-06-28T08:06:18 GCA_053203845.1 833143 42 6512_2#15 United Kingdom UoS3156-sc-2011-02-14-1078315; 6512_215 1313 GCF_900191125.1 Generic.1.0 86.79 SRA Sample Description GCF_900191125.1 category_na live 2017-06-22 UoS3156 PRJEB2417 GCF_900191125.1-RS_2025_09_04 SC 86 1078315 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYPA01 2009-01-27 UoS3156 Prokka current 86 ERS023261 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYPA01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-28 UoS3156 species_match 98.84 SAMEA1026388 11 Streptococcus pneumoniae 90.18 Streptococcus pneumoniae 1313 PRJEB2417 13 current na Best-placed reference protein set; GeneMarkS-2+ 62730 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 38 38 species Homo sapiens 1972 Streptococcus pneumoniae ERS023261 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-01-27 v1.2.4 2011-09-23T19:13:47.063 99.31 2111950 90.18 1313 2208 2017-06-24T15:40:59.000 2115556 55881 2111948 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 191 EBI 100 GCA_053203845.1 GCF_900191125.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900191125.1 type Nasophaynx 98.84 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FYPA00000000.1 2011-09-20 GCF_900191125.1 haploid ERS023261 86.79 0.62 100 2017-06-28T08:06:18 GCA_053203845.1 833143 45 6512_2#15 United Kingdom UoS3156-sc-2011-02-14-1078315; 6512_215 1313 GCA_900191125.1 Generic.1.0 86.79 SRA Sample Description GCA_900191125.1 category_na live 2017-06-22 UoS3156 PRJEB2417 Annotation submitted by SC SC 86 1078315 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYPA01 2009-01-27 UoS3156 6.10 Prokka current 86 ERS023261 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYPA01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-28 UoS3156 species_match 98.84 SAMEA1026321 11 Streptococcus pneumoniae 90.48 Streptococcus pneumoniae 1313 PRJEB2417 14 current na 64705 type Streptococcus pneumoniae 2017-06-28 38 38 species Homo sapiens 2069 Streptococcus pneumoniae ERS023284 SC 2009-03-04 v1.2.4 2011-09-23T19:13:55.496 99.31 2104678 90.48 1313 2114 2017-06-24T15:43:22.000 2105980 50812 2104670 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900191355.1 type Nasophaynx 98.85 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FYPO00000000.1 2011-09-20 GCA_900191355.1 haploid ERS023284 86.78 0.62 73 2017-06-28T08:06:20 GCA_053203845.1 830419 45 6512_3#14 United Kingdom UoS3234-sc-2011-02-14-1078338; 6512_314 1313 GCF_900191355.1 Generic.1.0 86.78 SRA Sample Description GCF_900191355.1 category_na live 2017-06-22 UoS3234 PRJEB2417 GCF_900191355.1-RS_2025_09_02 SC 67 1078338 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYPO01 2009-03-04 UoS3234 Prokka current 67 ERS023284 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYPO01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-28 UoS3234 species_match 98.85 SAMEA1026321 11 Streptococcus pneumoniae 90.48 Streptococcus pneumoniae 1313 PRJEB2417 14 current na Best-placed reference protein set; GeneMarkS-2+ 64705 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-02 38 38 species Homo sapiens 1967 Streptococcus pneumoniae ERS023284 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-04 v1.2.4 2011-09-23T19:13:55.496 99.31 2104678 90.48 1313 2196 2017-06-24T15:43:22.000 2105980 50812 2104670 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 179 EBI 100 GCA_053203845.1 GCF_900191355.1-RS_2025_09_02 SLX Streptococcus pneumoniae GCF_900191355.1 type Nasophaynx 98.85 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FYPO00000000.1 2011-09-20 GCF_900191355.1 haploid ERS023284 86.78 0.62 73 2017-06-28T08:06:20 GCA_053203845.1 830419 50 6512_3#14 United Kingdom UoS3234-sc-2011-02-14-1078338; 6512_314 1313 GCA_900191355.1 Generic.1.0 86.78 SRA Sample Description GCA_900191355.1 category_na live 2017-06-22 UoS3234 PRJEB2417 Annotation submitted by SC SC 67 1078338 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYPO01 2009-03-04 UoS3234 6.10 Prokka current 67 ERS023284 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYPO01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-28 UoS3234 species_match 98.85 SAMEA1888683 14 Streptococcus pneumoniae 90.19 Streptococcus pneumoniae 1313 PRJEB2357 15 current na 50024 type Streptococcus pneumoniae 2015-07-11 38 38 species Homo sapiens 2047 Streptococcus pneumoniae Streptococcus pneumoniae ERS019703 SC 2008-07-09 v1.2.4 2013-05-14T08:05:27.163 99.2 2112082 90.19 1313 2087 2024-02-05T16:22:32.000 2112228 49789 2112069 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001097865.1 type nasopharynx 98.78 OK 39.5 Streptococcus pneumoniae 69.3105 https://www.ncbi.nlm.nih.gov/nuccore/CKLX00000000.1 2013-05-13T11:08:32Z GCA_001097865.1 haploid public SMRU545-sc-2011-01-27-1060734 86.8 0.35 79 2015-07-28T08:15:26 GCA_053203845.1 833085 40 6649_7#17 SMRU545-sc-2011-01-27-1060734 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1888683 1313 GCF_001097865.1 Generic.1.0 86.8 SRA GCF_001097865.1 category_na live 2018-03-09T09:52:58Z SMRU545 PRJEB2357 GCF_001097865.1-RS_2026_01_19 SC SC 77 2018-03-09T09:52:58Z 2013-05-13T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKLX01 2008-07-09 SMRU545 2013-05-13T11:08:32Z Prokka current 77 SMRU545-sc-2011-01-27-1060734 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKLX01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU545 species_match 98.78 SAMEA1888683 14 Streptococcus pneumoniae 90.19 Streptococcus pneumoniae 1313 PRJEB2357 15 current na Best-placed reference protein set; GeneMarkS-2+ 50024 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 38 38 species Homo sapiens 1964 Streptococcus pneumoniae Streptococcus pneumoniae ERS019703 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-07-09 v1.2.4 2013-05-14T08:05:27.163 99.2 2112082 90.19 1313 2171 2024-02-05T16:22:32.000 2112228 49789 2112069 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 165 EBI 100 GCA_053203845.1 GCF_001097865.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001097865.1 type nasopharynx 98.78 OK 39.5 Streptococcus pneumoniae 69.3105 https://www.ncbi.nlm.nih.gov/nuccore/CKLX00000000.1 2013-05-13T11:08:32Z GCF_001097865.1 haploid public SMRU545-sc-2011-01-27-1060734 86.8 0.35 79 2015-07-28T08:15:26 GCA_053203845.1 833085 42 6649_7#17 SMRU545-sc-2011-01-27-1060734 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1888683 1313 GCA_001097865.1 Generic.1.0 86.8 SRA GCA_001097865.1 category_na live 2018-03-09T09:52:58Z SMRU545 PRJEB2357 Annotation submitted by SC SC SC 77 2018-03-09T09:52:58Z 2013-05-13T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKLX01 2008-07-09 SMRU545 6.10 2013-05-13T11:08:32Z Prokka current 77 SMRU545-sc-2011-01-27-1060734 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKLX01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU545 species_match 98.78 SAMEA1026788 14 Streptococcus pneumoniae 90.72 Streptococcus pneumoniae 1313 PRJEB2417 14 current na 47702 type Streptococcus pneumoniae 2017-06-28 38 38 species Homo sapiens 2026 Streptococcus pneumoniae ERS023379 SC 2010-01-25 v1.2.4 2011-09-23T19:14:33.216 98.73 2081788 90.72 1313 2066 2017-06-24T15:51:55.000 2081788 47702 2081784 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900192225.1 type Nasophaynx 98.82 OK 39.5 Streptococcus pneumoniae 28.0456 https://www.ncbi.nlm.nih.gov/nuccore/FYTG00000000.1 2011-09-20 GCA_900192225.1 haploid ERS023379 86.06 0.62 89 2017-06-28T08:06:27 GCA_053203845.1 821813 40 6512_7#17 United Kingdom UoS4246-sc-2011-02-14-1078433; 6512_717 1313 GCF_900192225.1 Generic.1.0 86.06 SRA Sample Description GCF_900192225.1 category_na live 2017-06-22 UoS4246 PRJEB2417 GCF_900192225.1-RS_2025_09_01 SC 89 1078433 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYTG01 2010-01-25 UoS4246 Prokka current 89 ERS023379 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYTG01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-28 UoS4246 species_match 98.82 SAMEA1026788 14 Streptococcus pneumoniae 90.72 Streptococcus pneumoniae 1313 PRJEB2417 14 current na Best-placed reference protein set; GeneMarkS-2+ 47702 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-01 38 38 species Homo sapiens 1944 Streptococcus pneumoniae ERS023379 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-01-25 v1.2.4 2011-09-23T19:14:33.216 98.73 2081788 90.72 1313 2160 2017-06-24T15:51:55.000 2081788 47702 2081784 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 173 EBI 100 GCA_053203845.1 GCF_900192225.1-RS_2025_09_01 SLX Streptococcus pneumoniae GCF_900192225.1 type Nasophaynx 98.82 OK 39.5 Streptococcus pneumoniae 28.0456 https://www.ncbi.nlm.nih.gov/nuccore/FYTG00000000.1 2011-09-20 GCF_900192225.1 haploid ERS023379 86.06 0.62 89 2017-06-28T08:06:27 GCA_053203845.1 821813 43 6512_7#17 United Kingdom UoS4246-sc-2011-02-14-1078433; 6512_717 1313 GCA_900192225.1 Generic.1.0 86.06 SRA Sample Description GCA_900192225.1 category_na live 2017-06-22 UoS4246 PRJEB2417 Annotation submitted by SC SC 89 1078433 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYTG01 2010-01-25 UoS4246 6.10 Prokka current 89 ERS023379 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYTG01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-28 UoS4246 species_match 98.82 SAMEA1026478 14 Streptococcus pneumoniae 90.28 Streptococcus pneumoniae 1313 PRJEB2417 14 current na 46486 type Streptococcus pneumoniae 2017-06-29 38 38 species Homo sapiens 2078 Streptococcus pneumoniae ERS023102 SC 2007-01-31 v1.2.4 2011-09-13T21:54:14.993 99.07 2121106 90.28 1313 2117 2017-06-24T15:28:31.000 2121106 46486 2121103 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900189465.1 type Nasophaynx 98.8 OK 39.5 Streptococcus pneumoniae 53.4217 https://www.ncbi.nlm.nih.gov/nuccore/FYIA00000000.1 2011-09-06 GCA_900189465.1 haploid ERS023102 87.26 0.62 85 2017-06-28T08:06:02 GCA_053203845.1 837601 39 6470_6#24 United Kingdom UoS0315-sc-2011-02-14-1078156; 6470_624 1313 GCF_900189465.1 Generic.1.0 87.26 SRA Sample Description GCF_900189465.1 category_na live 2017-06-22 UoS0315 PRJEB2417 GCF_900189465.1-RS_2025_09_01 SC 85 1078156 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYIA01 2007-01-31 UoS0315 Prokka current 85 ERS023102 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYIA01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-29 UoS0315 species_match 98.8 SAMEA1026478 14 Streptococcus pneumoniae 90.28 Streptococcus pneumoniae 1313 PRJEB2417 14 current na Best-placed reference protein set; GeneMarkS-2+ 46486 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-01 38 38 species Homo sapiens 1970 Streptococcus pneumoniae ERS023102 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007-01-31 v1.2.4 2011-09-13T21:54:14.993 99.07 2121106 90.28 1313 2183 2017-06-24T15:28:31.000 2121106 46486 2121103 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 172 EBI 100 GCA_053203845.1 GCF_900189465.1-RS_2025_09_01 SLX Streptococcus pneumoniae GCF_900189465.1 type Nasophaynx 98.8 OK 39.5 Streptococcus pneumoniae 53.4217 https://www.ncbi.nlm.nih.gov/nuccore/FYIA00000000.1 2011-09-06 GCF_900189465.1 haploid ERS023102 87.26 0.62 85 2017-06-28T08:06:02 GCA_053203845.1 837601 41 6470_6#24 United Kingdom UoS0315-sc-2011-02-14-1078156; 6470_624 1313 GCA_900189465.1 Generic.1.0 87.26 SRA Sample Description GCA_900189465.1 category_na live 2017-06-22 UoS0315 PRJEB2417 Annotation submitted by SC SC 85 1078156 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYIA01 2007-01-31 UoS0315 6.10 Prokka current 85 ERS023102 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYIA01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-29 UoS0315 species_match 98.8 SAMEA1026782 10 Streptococcus pneumoniae 90.15 Streptococcus pneumoniae 1313 PRJEB2417 13 current na 70162 type Streptococcus pneumoniae 2017-06-28 38 38 species Homo sapiens 2068 Streptococcus pneumoniae ERS023297 SC 2009-03-10 v1.2.4 2011-09-23T19:14:01.606 99.31 2109579 90.15 1313 2116 2017-06-24T15:45:19.000 2114673 45451 2109575 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900191475.1 type Nasophaynx 98.85 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FYQF00000000.1 2011-09-20 GCA_900191475.1 haploid ERS023297 86.66 0.62 94 2017-06-28T08:06:21 GCA_053203845.1 832315 48 6512_4#3 United Kingdom UoS3258-sc-2011-02-14-1078351; 6512_43 1313 GCF_900191475.1 Generic.1.0 86.66 SRA Sample Description GCF_900191475.1 category_na live 2017-06-22 UoS3258 PRJEB2417 GCF_900191475.1-RS_2025_09_02 SC 74 1078351 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYQF01 2009-03-10 UoS3258 Prokka current 74 ERS023297 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYQF01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-28 UoS3258 species_match 98.85 SAMEA1026782 10 Streptococcus pneumoniae 90.15 Streptococcus pneumoniae 1313 PRJEB2417 13 current na Best-placed reference protein set; GeneMarkS-2+ 70162 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-02 38 38 species Homo sapiens 1971 Streptococcus pneumoniae ERS023297 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-10 v1.2.4 2011-09-23T19:14:01.606 99.31 2109579 90.15 1313 2202 2017-06-24T15:45:19.000 2114673 45451 2109575 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 182 EBI 100 GCA_053203845.1 GCF_900191475.1-RS_2025_09_02 SLX Streptococcus pneumoniae GCF_900191475.1 type Nasophaynx 98.85 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FYQF00000000.1 2011-09-20 GCF_900191475.1 haploid ERS023297 86.66 0.62 94 2017-06-28T08:06:21 GCA_053203845.1 832315 49 6512_4#3 United Kingdom UoS3258-sc-2011-02-14-1078351; 6512_43 1313 GCA_900191475.1 Generic.1.0 86.66 SRA Sample Description GCA_900191475.1 category_na live 2017-06-22 UoS3258 PRJEB2417 Annotation submitted by SC SC 74 1078351 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYQF01 2009-03-10 UoS3258 6.10 Prokka current 74 ERS023297 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYQF01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-28 UoS3258 species_match 98.85 SAMEA1026803 12 Streptococcus pneumoniae 90.26 Streptococcus pneumoniae 1313 PRJEB2417 16 current na 49114 type Streptococcus pneumoniae 2017-06-28 38 38 species Homo sapiens 2070 Streptococcus pneumoniae ERS023378 SC 2010-01-25 v1.2.4 2011-09-23T19:14:32.896 99.31 2110251 90.26 1313 2117 2017-06-24T15:51:45.000 2114423 45434 2110247 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900192325.1 type Nasophaynx 98.85 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FYTL00000000.1 2011-09-20 GCA_900192325.1 haploid ERS023378 86.8 0.62 99 2017-06-28T08:06:27 GCA_053203845.1 832600 47 6512_7#16 United Kingdom UoS4245-sc-2011-02-14-1078432; 6512_716 1313 GCF_900192325.1 Generic.1.0 86.8 SRA Sample Description GCF_900192325.1 category_na live 2017-06-22 UoS4245 PRJEB2417 GCF_900192325.1-RS_2025_09_04 SC 80 1078432 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYTL01 2010-01-25 UoS4245 Prokka current 80 ERS023378 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYTL01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-28 UoS4245 species_match 98.85 SAMEA1026803 12 Streptococcus pneumoniae 90.26 Streptococcus pneumoniae 1313 PRJEB2417 16 current na Best-placed reference protein set; GeneMarkS-2+ 49114 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 38 38 species Homo sapiens 1956 Streptococcus pneumoniae ERS023378 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-01-25 v1.2.4 2011-09-23T19:14:32.896 99.31 2110251 90.26 1313 2200 2017-06-24T15:51:45.000 2114423 45434 2110247 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 195 EBI 100 GCA_053203845.1 GCF_900192325.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900192325.1 type Nasophaynx 98.85 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FYTL00000000.1 2011-09-20 GCF_900192325.1 haploid ERS023378 86.8 0.62 99 2017-06-28T08:06:27 GCA_053203845.1 832600 49 6512_7#16 United Kingdom UoS4245-sc-2011-02-14-1078432; 6512_716 1313 GCA_900192325.1 Generic.1.0 86.8 SRA Sample Description GCA_900192325.1 category_na live 2017-06-22 UoS4245 PRJEB2417 Annotation submitted by SC SC 80 1078432 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYTL01 2010-01-25 UoS4245 6.10 Prokka current 80 ERS023378 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYTL01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-28 UoS4245 species_match 98.85 SAMEA1032706 13 Streptococcus pneumoniae 90.03 Streptococcus pneumoniae 1313 PRJEB2632 13 current na 45303 type Streptococcus pneumoniae 2015-07-29 38 38 species Homo sapiens 2036 Streptococcus pneumoniae Streptococcus pneumoniae ERS044081 SC 2001 v1.2.4 2012-01-23T19:54:04.956 99.31 2111945 90.03 1313 2065 2024-02-05T23:05:18.000 2111945 45303 2111945 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001128185.2 type nasopharynx 98.88 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CNTR00000000.2 2012-01-19T13:56:13Z GCA_001128185.2 haploid public 147587-sc-2011-08-01T09:45:29Z-1250146 86.64 0.62 264 2015-09-10T08:19:59 GCA_053203845.1 833548 29 6999_5#1 147587-sc-2011-08-01T09:45:29Z-1250146 USA: Massachesetts Streptococcus pneumoniae SAMEA1032706 1313 GCF_001128185.1 Generic.1.0 86.64 SRA GCF_001128185.1 category_na live 2018-03-09T10:03:24Z 147587 PRJEB2632 GCF_001128185.1-RS_2026_01_25 SC SC 264 2018-03-09T10:03:24Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNTR02 2001 147587 2012-01-19T13:56:13Z Velvet current 264 147587-sc-2011-08-01T09:45:29Z-1250146 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNTR02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 147587 species_match 98.88 SAMEA1032706 13 Streptococcus pneumoniae 90.03 Streptococcus pneumoniae 1313 PRJEB2632 13 current na Best-placed reference protein set; GeneMarkS-2+ 45303 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 38 38 species Homo sapiens 1954 Streptococcus pneumoniae Streptococcus pneumoniae ERS044081 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2001 v1.2.4 2012-01-23T19:54:04.956 99.31 2111945 90.03 1313 2179 2024-02-05T23:05:18.000 2111945 45303 2111945 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 181 EBI 100 GCA_053203845.1 GCF_001128185.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001128185.1 type nasopharynx 98.88 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CNTR00000000.2 2012-01-19T13:56:13Z GCF_001128185.1 haploid public 147587-sc-2011-08-01T09:45:29Z-1250146 86.64 0.62 264 2015-09-10T08:19:59 GCA_053203845.1 833548 44 6999_5#1 147587-sc-2011-08-01T09:45:29Z-1250146 USA: Massachesetts Streptococcus pneumoniae SAMEA1032706 1313 GCA_001128185.2 Generic.1.0 86.64 SRA GCA_001128185.2 category_na live 2018-03-09T10:03:24Z 147587 PRJEB2632 Annotation submitted by SC SC SC 264 2018-03-09T10:03:24Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNTR02 2001 147587 6.10 2012-01-19T13:56:13Z Velvet current 264 147587-sc-2011-08-01T09:45:29Z-1250146 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNTR02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 147587 species_match 98.88 SAMEA1026444 16 Streptococcus pneumoniae 89.05 Streptococcus pneumoniae 1313 PRJEB2417 16 current na 44858 type Streptococcus pneumoniae 2017-06-29 38 38 species Homo sapiens 2072 Streptococcus pneumoniae ERS023085 SC 2007-01-26 v1.2.4 2011-09-13T21:54:07.916 98.87 2121524 89.05 1313 2112 2017-06-24T15:27:25.000 2121524 44858 2121519 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900189545.1 type Nasophaynx 98.82 OK 39.5 Streptococcus pneumoniae 38.9092 https://www.ncbi.nlm.nih.gov/nuccore/FYIH00000000.1 2011-09-06 GCA_900189545.1 haploid ERS023085 86.09 0.68 89 2017-06-28T08:06:01 GCA_053203845.1 837071 40 6470_6#7 United Kingdom UoS0284-sc-2011-02-14-1078139; 6470_67 1313 GCF_900189545.1 Generic.1.0 86.09 SRA Sample Description GCF_900189545.1 category_na live 2017-06-22 UoS0284 PRJEB2417 GCF_900189545.1-RS_2025_09_02 SC 89 1078139 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYIH01 2007-01-26 UoS0284 Prokka current 89 ERS023085 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYIH01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-29 UoS0284 species_match 98.82 SAMEA1026444 16 Streptococcus pneumoniae 89.05 Streptococcus pneumoniae 1313 PRJEB2417 16 current na Best-placed reference protein set; GeneMarkS-2+ 44858 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-02 38 38 species Homo sapiens 1958 Streptococcus pneumoniae ERS023085 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007-01-26 v1.2.4 2011-09-13T21:54:07.916 98.87 2121524 89.05 1313 2183 2017-06-24T15:27:25.000 2121524 44858 2121519 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 184 EBI 100 GCA_053203845.1 GCF_900189545.1-RS_2025_09_02 SLX Streptococcus pneumoniae GCF_900189545.1 type Nasophaynx 98.82 OK 39.5 Streptococcus pneumoniae 38.9092 https://www.ncbi.nlm.nih.gov/nuccore/FYIH00000000.1 2011-09-06 GCF_900189545.1 haploid ERS023085 86.09 0.68 89 2017-06-28T08:06:01 GCA_053203845.1 837071 41 6470_6#7 United Kingdom UoS0284-sc-2011-02-14-1078139; 6470_67 1313 GCA_900189545.1 Generic.1.0 86.09 SRA Sample Description GCA_900189545.1 category_na live 2017-06-22 UoS0284 PRJEB2417 Annotation submitted by SC SC 89 1078139 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYIH01 2007-01-26 UoS0284 6.10 Prokka current 89 ERS023085 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYIH01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-29 UoS0284 species_match 98.82 SAMEA2796483 10 Streptococcus pneumoniae 89.87 Streptococcus pneumoniae 1313 PRJEB3084 12 current na 67242 type Streptococcus pneumoniae 2019-05-27 38 38 species Homo sapiens 2153 Streptococcus pneumoniae Streptococcus pneumoniae ERS558094 SC 2008 v1.2.4 2015-01-30T08:09:10.256 99.31 2157222 89.87 1313 2200 Streptococcus pneumoniae 2024-02-06T15:55:21.000 2159814 66210 2157214 blood Homo sapiens Streptococcus pneumoniae bacteremia ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900064915.2 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHUA00000000.2 2015-01-27T09:20:53Z GCA_900064915.2 haploid public GPS_US_2008232504-sc-2138462 88.35 0.62 80 2015-08-11T22:00:48 GCA_053203845.1 851505 47 14673_1#75 GPS_US_2008232504-sc-2138462 USA 14673_1#75 SAMEA2796483 1313 GCF_900064915.2 Generic.1.0 88.35 SRA GCF_900064915.2 category_na live 2019-04-18T15:39:27Z GPSC38 PRJEB3084 GCF_900064915.2-RS_2026_01_31 SC SC 70 2138462 2019-04-18T15:39:27Z 2015-01-27T00:00:00.000 2008232504 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHUA02 2008 2245STDY5982504 2015-01-27T09:20:53Z Prokka current 70 GPS_US_2008232504-sc-2138462 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHUA02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-27 GPSC38 species_match 98.82 SAMEA2796483 10 Streptococcus pneumoniae 89.87 Streptococcus pneumoniae 1313 PRJEB3084 12 current na Best-placed reference protein set; GeneMarkS-2+ 67242 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 38 38 species Homo sapiens 2030 Streptococcus pneumoniae Streptococcus pneumoniae ERS558094 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008 v1.2.4 2015-01-30T08:09:10.256 99.31 2157222 89.87 1313 2275 Streptococcus pneumoniae 2024-02-06T15:55:21.000 2159814 66210 2157214 blood Homo sapiens Streptococcus pneumoniae bacteremia 192 ST393 EBI 100 GCA_053203845.1 GCF_900064915.2-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_900064915.2 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHUA00000000.2 2015-01-27T09:20:53Z GCF_900064915.2 haploid public GPS_US_2008232504-sc-2138462 88.35 0.62 80 2015-08-11T22:00:48 GCA_053203845.1 851505 53 14673_1#75 GPS_US_2008232504-sc-2138462 USA 14673_1#75 SAMEA2796483 1313 GCA_900064915.2 Generic.1.0 88.35 SRA GCA_900064915.2 category_na live 2019-04-18T15:39:27Z GPSC38 PRJEB3084 Annotation submitted by SC SC SC 70 2138462 2019-04-18T15:39:27Z 2015-01-27T00:00:00.000 2008232504 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHUA02 2008 GPSC38 substr. ST393 6.10 2015-01-27T09:20:53Z Prokka current 70 GPS_US_2008232504-sc-2138462 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHUA02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-27 GPSC38 species_match 98.82 SAMEA2796491 10 Streptococcus pneumoniae 90.34 Streptococcus pneumoniae 1313 PRJEB3084 11 current na 55448 type Streptococcus pneumoniae 2019-05-24 38 38 species Homo sapiens 2077 Streptococcus pneumoniae Streptococcus pneumoniae ERS558102 SC 2008 v1.2.4 2015-01-30T08:09:10.643 99.31 2107800 90.34 1313 2123 Streptococcus pneumoniae 2024-02-06T15:55:21.000 2109246 54730 2107794 blood Homo sapiens Streptococcus pneumoniae Pneumonia ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900062015.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHUH00000000.2 2015-01-27T09:20:52Z GCA_900062015.2 haploid public GPS_US_2009201003-sc-2138470 86.78 0.62 72 2015-08-11T22:00:48 GCA_053203845.1 831455 46 14673_1#83 GPS_US_2009201003-sc-2138470 USA 14673_1#83 SAMEA2796491 1313 GCF_900062015.2 Generic.1.0 86.78 SRA GCF_900062015.2 category_na live 2019-04-18T15:39:27Z GPSC38 PRJEB3084 GCF_900062015.2-RS_2026_01_31 SC SC 65 2138470 2019-04-18T15:39:27Z 2015-01-27T00:00:00.000 2009201003 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHUH02 2008 2245STDY5982512 2015-01-27T09:20:52Z Prokka current 65 GPS_US_2009201003-sc-2138470 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHUH02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-24 GPSC38 species_match 98.87 SAMEA2796491 10 Streptococcus pneumoniae 90.34 Streptococcus pneumoniae 1313 PRJEB3084 11 current na Best-placed reference protein set; GeneMarkS-2+ 55448 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 38 38 species Homo sapiens 1943 Streptococcus pneumoniae Streptococcus pneumoniae ERS558102 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008 v1.2.4 2015-01-30T08:09:10.643 99.31 2107800 90.34 1313 2191 Streptococcus pneumoniae 2024-02-06T15:55:21.000 2109246 54730 2107794 blood Homo sapiens Streptococcus pneumoniae Pneumonia 197 ST393 EBI 100 GCA_053203845.1 GCF_900062015.2-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_900062015.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHUH00000000.2 2015-01-27T09:20:52Z GCF_900062015.2 haploid public GPS_US_2009201003-sc-2138470 86.78 0.62 72 2015-08-11T22:00:48 GCA_053203845.1 831455 51 14673_1#83 GPS_US_2009201003-sc-2138470 USA 14673_1#83 SAMEA2796491 1313 GCA_900062015.2 Generic.1.0 86.78 SRA GCA_900062015.2 category_na live 2019-04-18T15:39:27Z GPSC38 PRJEB3084 Annotation submitted by SC SC SC 65 2138470 2019-04-18T15:39:27Z 2015-01-27T00:00:00.000 2009201003 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHUH02 2008 GPSC38 substr. ST393 6.10 2015-01-27T09:20:52Z Prokka current 65 GPS_US_2009201003-sc-2138470 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHUH02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-24 GPSC38 species_match 98.87 SAMEA3353712 6 Streptococcus pneumoniae 88.26 Streptococcus pneumoniae PRJEB3084 6 na 94242 type Streptococcus pneumoniae 2019-05-27 38 38 Homo sapiens 2177 Streptococcus pneumoniae Streptococcus pneumoniae ERS708067 SC 2010 2015-10-14T08:10:58.883 2171082 88.26 1313 2230 Streptococcus pneumoniae 2024-02-06T15:57:22.000 2171082 94242 2171074 NP Homo sapiens Carriage from large multi-isolate project ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901235075.1 type NP 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANXC000000000.1 2015-10-13T13:59:22Z GCA_901235075.1 haploid public GPS_ZA_carriage_SP1607-sc-2278314 87.32 52 2018-03-10T20:10:08 GCA_053203845.1 856322 53 17150_4#91 GPS_ZA_carriage_SP1607-sc-2278314 South Africa 17150_4#91 SAMEA3353712 1313 Generic.1.0 87.32 SRA category_na live 2019-04-18T15:56:57Z GPSC38 PRJEB3084 SC SC 52 2278314 2019-04-18T15:56:57Z 2015-10-13T00:00:00.000 10716 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANXC01 2010 GPSC38 substr. ST393 2015-10-13T13:59:22Z Prokka current 52 GPS_ZA_carriage_SP1607-sc-2278314 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANXC01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-27 GPSC38 species_match 98.85 SAMEA3354337 6 Streptococcus pneumoniae 86.29 Streptococcus pneumoniae PRJEB3084 7 na 89420 type Streptococcus pneumoniae 2019-05-29 38 38 Homo sapiens 2198 Streptococcus pneumoniae Streptococcus pneumoniae ERS708692 SC 2012 2015-10-14T08:11:17.523 2221166 86.29 1313 2250 Streptococcus pneumoniae 2024-02-06T15:53:18.000 2221228 89420 2221166 NP Homo sapiens Carriage from large multi-isolate project ST11082 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901332805.1 type NP 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABCGX000000000.1 2015-10-13T13:58:35Z GCA_901332805.1 haploid public GPS_ZA_carriage_SP2024-sc-2278981 87.35 48 2018-03-10T20:10:35 GCA_053203845.1 872906 52 17138_4#55 GPS_ZA_carriage_SP2024-sc-2278981 South Africa 17138_4#55 SAMEA3354337 1313 Generic.1.0 87.35 SRA category_na live 2019-04-18T15:38:58Z GPSC38 PRJEB3084 SC SC 46 2278981 2019-04-18T15:38:58Z 2015-10-13T00:00:00.000 32367 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABCGX01 2012 GPSC38 substr. ST11082 2015-10-13T13:58:35Z Prokka current 46 GPS_ZA_carriage_SP2024-sc-2278981 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABCGX01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-29 GPSC38 species_match 98.84 SAMEA3353459 6 Streptococcus pneumoniae 89.39 Streptococcus pneumoniae PRJEB3084 6 na 87199 type Streptococcus pneumoniae 2019-05-23 38 38 Homo sapiens 2132 Streptococcus pneumoniae Streptococcus pneumoniae ERS707814 SC 2012 2015-10-14T08:10:50.156 2137795 89.39 1313 2184 Streptococcus pneumoniae 2024-02-06T15:57:14.000 2137795 87199 2137792 NP Homo sapiens Carriage from large multi-isolate project ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901269525.1 type NP 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAASZC000000000.1 2015-10-13T13:59:12Z GCA_901269525.1 haploid public GPS_ZA_carriage_SP1482-sc-2278059 87.08 47 2018-03-10T20:09:56 GCA_053203845.1 843209 52 17175_4#57 GPS_ZA_carriage_SP1482-sc-2278059 South Africa 17175_4#57 SAMEA3353459 1313 Generic.1.0 87.08 SRA category_na live 2019-04-18T15:56:55Z GPSC38 PRJEB3084 SC SC 47 2278059 2019-04-18T15:56:55Z 2015-10-13T00:00:00.000 30591 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAASZC01 2012 GPSC38 substr. ST393 2015-10-13T13:59:12Z Prokka current 47 GPS_ZA_carriage_SP1482-sc-2278059 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAASZC01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-23 GPSC38 species_match 98.85 SAMEA3353463 7 Streptococcus pneumoniae 89.44 Streptococcus pneumoniae PRJEB3084 7 na 86919 type Streptococcus pneumoniae 2019-05-23 38 38 Homo sapiens 2123 Streptococcus pneumoniae Streptococcus pneumoniae ERS707818 SC 2012 2015-10-14T08:10:50.280 2136572 89.44 1313 2176 Streptococcus pneumoniae 2024-02-06T15:57:14.000 2136592 86919 2136567 NP Homo sapiens Carriage from large multi-isolate project ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901269825.1 type NP 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAATAT000000000.1 2015-10-13T13:59:14Z GCA_901269825.1 haploid public GPS_ZA_carriage_SP1484-sc-2278063 87.08 52 2018-03-10T20:09:57 GCA_053203845.1 842499 53 17175_4#59 GPS_ZA_carriage_SP1484-sc-2278063 South Africa 17175_4#59 SAMEA3353463 1313 Generic.1.0 87.08 SRA category_na live 2019-04-18T15:56:55Z GPSC38 PRJEB3084 SC SC 51 2278063 2019-04-18T15:56:55Z 2015-10-13T00:00:00.000 32375 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAATAT01 2012 GPSC38 substr. ST393 2015-10-13T13:59:14Z Prokka current 51 GPS_ZA_carriage_SP1484-sc-2278063 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAATAT01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-23 GPSC38 species_match 98.85 SAMEA3232420 8 Streptococcus pneumoniae 87.49 Streptococcus pneumoniae PRJEB3084 10 na 116992 type Streptococcus pneumoniae 2019-05-27 38 38 Homo sapiens 2188 Streptococcus pneumoniae Streptococcus pneumoniae ERS653631 SC 2012 2015-08-20T14:14:28.280 2186900 87.49 1313 2236 Streptococcus pneumoniae 2024-02-06T15:58:01.000 2190907 82401 2186900 NP swab Homo sapiens Carriage from large multi-isolate project ST11007 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901221585.1 type NP swab 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAALWZ000000000.1 2015-08-12T10:28:03Z GCA_901221585.1 haploid public GPS_NP_2072-sc-2205338 90.63 62 2018-03-10T20:02:31 GCA_001457635.1 864315 48 16288_3#77 GPS_NP_2072-sc-2205338 Nepal 16288_3#77 SAMEA3232420 1313 Generic.1.0 90.63 SRA category_na live 2019-04-18T16:01:02Z GPSC257 PRJEB3084 SC SC 48 2205338 2019-04-18T16:01:02Z 2015-08-12T00:00:00.000 GPS_NP_2072 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAALWZ01 2012 GPSC257 substr. ST11007 2015-08-12T10:28:03Z Prokka current 48 GPS_NP_2072-sc-2205338 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAALWZ01 Scaffold SOURCE_DATABASE_GENBANK Nepal 2019-05-27 GPSC257 species_match 98.74 SAMEA3353492 10 Streptococcus pneumoniae 89.67 Streptococcus pneumoniae PRJEB3084 10 na 75642 type Streptococcus pneumoniae 2019-05-27 38 38 Homo sapiens 2114 Streptococcus pneumoniae Streptococcus pneumoniae ERS707847 SC 2012 2015-10-14T08:10:51.110 2141954 89.67 1313 2166 Streptococcus pneumoniae 2024-02-06T15:57:15.000 2141954 75642 2141949 NP Homo sapiens Carriage from large multi-isolate project ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901268165.1 type NP 98.88 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAASUD000000000.1 2015-10-13T13:58:36Z GCA_901268165.1 haploid public GPS_ZA_carriage_SP1398-sc-2278092 87.53 52 2018-03-10T20:09:58 GCA_053203845.1 843996 52 17059_8#70 GPS_ZA_carriage_SP1398-sc-2278092 South Africa 17059_8#70 SAMEA3353492 1313 Generic.1.0 87.53 SRA category_na live 2019-04-18T15:56:55Z GPSC38 PRJEB3084 SC SC 52 2278092 2019-04-18T15:56:55Z 2015-10-13T00:00:00.000 30811 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAASUD01 2012 GPSC38 substr. ST393 2015-10-13T13:58:36Z Prokka current 52 GPS_ZA_carriage_SP1398-sc-2278092 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAASUD01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-27 GPSC38 species_match 98.88 SAMEA3206797 9 Streptococcus pneumoniae 90.37 Streptococcus pneumoniae PRJEB3084 9 na 74267 type Streptococcus pneumoniae 2019-05-23 38 38 Homo sapiens 2075 Streptococcus pneumoniae Streptococcus pneumoniae ERS638807 SC 2009 2015-06-10T08:08:52.310 2118309 90.37 1313 2125 Streptococcus pneumoniae 2024-02-06T15:56:34.000 2120466 74267 2118294 NP Homo sapiens Carriage from large multi-isolate project ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901321775.1 type NP 98.88 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABAQQ000000000.1 2015-06-09T14:25:22Z GCA_901321775.1 haploid public GPS_ZA_carriage_SP266-sc-2191731 87.24 72 2018-03-10T19:53:30 GCA_053203845.1 835151 50 15841_1#31 GPS_ZA_carriage_SP266-sc-2191731 South Africa 15841_1#31 SAMEA3206797 1313 Generic.1.0 87.24 SRA category_na live 2019-04-18T15:56:46Z GPSC38 PRJEB3084 SC SC 64 2191731 2019-04-18T15:56:46Z 2015-06-09T00:00:00.000 972 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABAQQ01 2009 GPSC38 substr. ST393 2015-06-09T14:25:22Z Prokka current 64 GPS_ZA_carriage_SP266-sc-2191731 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABAQQ01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-23 GPSC38 species_match 98.88 SAMEA3353471 9 Streptococcus pneumoniae 89.6 Streptococcus pneumoniae PRJEB3084 10 na 71188 type Streptococcus pneumoniae 2019-05-24 38 38 Homo sapiens 2119 Streptococcus pneumoniae Streptococcus pneumoniae ERS707826 SC 2012 2015-10-14T08:10:50.500 2143048 89.6 1313 2171 Streptococcus pneumoniae 2024-02-06T15:57:15.000 2143148 71188 2143048 NP Homo sapiens Carriage from large multi-isolate project ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901266505.1 type NP 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAASNM000000000.1 2015-10-13T13:59:34Z GCA_901266505.1 haploid public GPS_ZA_carriage_SP1387-sc-2278071 87.51 59 2018-03-10T20:09:57 GCA_053203845.1 844597 52 17059_8#59 GPS_ZA_carriage_SP1387-sc-2278071 South Africa 17059_8#59 SAMEA3353471 1313 Generic.1.0 87.51 SRA category_na live 2019-04-18T15:56:55Z GPSC38 PRJEB3084 SC SC 56 2278071 2019-04-18T15:56:55Z 2015-10-13T00:00:00.000 31211 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAASNM01 2012 GPSC38 substr. ST393 2015-10-13T13:59:34Z Prokka current 56 GPS_ZA_carriage_SP1387-sc-2278071 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAASNM01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-24 GPSC38 species_match 98.86 SAMEA3309773 8 Streptococcus pneumoniae 89.32 Streptococcus pneumoniae PRJEB3084 8 na 69939 type Streptococcus pneumoniae 2019-05-24 38 38 Homo sapiens 2093 Streptococcus pneumoniae Streptococcus pneumoniae ERS686235 SC 2009 2015-08-19T08:07:00.813 2133786 89.32 1313 2145 Streptococcus pneumoniae 2024-02-06T15:54:04.000 2133810 69939 2133782 NP swab Homo sapiens Carriage from large multi-isolate project ST6103 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901229985.1 type NP swab 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANCW000000000.1 2015-08-18T09:03:49Z GCA_901229985.1 haploid public GPS_GM_1791-sc-2206587 86.85 57 2018-03-10T20:03:26 GCA_053203845.1 841482 52 16453_2#19 GPS_GM_1791-sc-2206587 Gambia 16453_2#19 SAMEA3309773 1313 Generic.1.0 86.85 SRA category_na live 2019-04-18T15:39:10Z GPSC117 PRJEB3084 SC SC 56 2206587 2019-04-18T15:39:10Z 2015-08-18T00:00:00.000 3385 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANCW01 2009 GPSC117 substr. ST6103 2015-08-18T09:03:49Z Prokka current 56 GPS_GM_1791-sc-2206587 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANCW01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-24 GPSC117 species_match 98.71 SAMEA2796590 9 Streptococcus pneumoniae 90.41 Streptococcus pneumoniae PRJEB3084 11 na 69418 type Streptococcus pneumoniae 2019-05-23 38 38 Homo sapiens 2070 Streptococcus pneumoniae Streptococcus pneumoniae ERS558201 SC 2006 2015-01-30T08:09:15.106 2106470 90.41 1313 2117 Streptococcus pneumoniae 2024-02-06T15:55:25.000 2108882 68415 2106470 blood Homo sapiens Bacteremia from large multi-isolate project ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901241865.1 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAOWZ000000000.1 2015-01-27T09:20:52Z GCA_901241865.1 haploid public GPS_US_5993_07-sc-2138570 86.79 73 2018-03-10T19:32:59 GCA_053203845.1 831032 47 14673_2#87 GPS_US_5993_07-sc-2138570 USA 14673_2#87 SAMEA2796590 1313 Generic.1.0 86.79 SRA category_na live 2019-04-18T15:39:28Z GPSC38 PRJEB3084 SC SC 63 2138570 2019-04-18T15:39:28Z 2015-01-27T00:00:00.000 5993_07 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAOWZ01 2006 GPSC38 substr. ST393 2015-01-27T09:20:52Z Prokka current 63 GPS_US_5993_07-sc-2138570 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAOWZ01 Scaffold SOURCE_DATABASE_GENBANK USA 2019-05-23 GPSC38 species_match 98.87 SAMEA3232645 12 Streptococcus pneumoniae 84.63 Streptococcus pneumoniae PRJEB3084 13 na 71581 type Streptococcus pneumoniae 2019-05-29 38 38 Homo sapiens 2268 Streptococcus pneumoniae Streptococcus pneumoniae ERS653856 SC 2014 2015-08-20T14:14:54.360 2285824 84.63 1313 2320 Streptococcus pneumoniae 2024-02-06T15:58:08.000 2285979 66962 2285817 NP swab Homo sapiens Carriage from large multi-isolate project ST9325 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901219975.1 type NP swab 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAALQR000000000.1 2015-08-12T10:28:03Z GCA_901219975.1 haploid public GPS_NP_3741-sc-2205564 88.16 77 2018-03-10T20:02:42 GCA_053203845.1 900106 52 17138_5#34 GPS_NP_3741-sc-2205564 Nepal 17138_5#34 SAMEA3232645 1313 Generic.1.0 88.16 SRA category_na live 2019-04-18T16:01:04Z GPSC38 PRJEB3084 SC SC 72 2205564 2019-04-18T16:01:04Z 2015-08-12T00:00:00.000 GPS_NP_6741 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAALQR01 2014 GPSC38 substr. ST9325 2015-08-12T10:28:03Z Prokka current 72 GPS_NP_3741-sc-2205564 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAALQR01 Scaffold SOURCE_DATABASE_GENBANK Nepal 2019-05-29 GPSC38 species_match 98.86 SAMEA3176157 10 Streptococcus pneumoniae 88.52 Streptococcus pneumoniae PRJEB3084 10 na 66204 type Streptococcus pneumoniae 2019-05-27 38 38 Homo sapiens 2119 Streptococcus pneumoniae Streptococcus pneumoniae ERS629105 SC 2012 2015-05-22T09:07:08.720 2154976 88.52 1313 2165 Streptococcus pneumoniae 2024-02-06T15:58:44.000 2156379 66204 2154976 blood Homo sapiens sepsis from large multi-isolate project ST12764 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901277035.1 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAUCH000000000.1 2015-05-19T13:43:10Z GCA_901277035.1 haploid public GPS_PL_6594_12-sc-2191216 86.93 74 2018-03-10T19:49:23 GCA_053203845.1 848854 46 15682_2#42 GPS_PL_6594_12-sc-2191216 Poland 15682_2#42 SAMEA3176157 1313 Generic.1.0 86.93 SRA category_na live 2019-04-18T16:01:13Z GPSC38 PRJEB3084 SC SC 68 2191216 2019-04-18T16:01:13Z 2015-05-19T00:00:00.000 8268 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAUCH01 2012 GPSC38 substr. ST12764 2015-05-19T13:43:10Z Prokka current 68 GPS_PL_6594_12-sc-2191216 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAUCH01 Scaffold SOURCE_DATABASE_GENBANK Poland 2019-05-27 GPSC38 species_match 98.85 SAMEA3208885 9 Streptococcus pneumoniae 90.07 Streptococcus pneumoniae PRJEB3084 10 na 67026 type Streptococcus pneumoniae 2019-05-23 38 38 Homo sapiens 2088 Streptococcus pneumoniae Streptococcus pneumoniae ERS639987 SC 2013 2015-06-24T09:08:49.343 2114582 90.07 1313 2138 Streptococcus pneumoniae 2024-02-06T15:56:54.000 2117172 64967 2114582 NP Homo sapiens Carriage from large multi-isolate project ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901275735.1 type NP 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAATXH000000000.1 2015-06-23T09:53:01Z GCA_901275735.1 haploid public GPS_ZA_carriage_SP862-sc-2205021 86.79 79 2018-03-10T19:55:03 GCA_053203845.1 834259 50 15995_1#145 GPS_ZA_carriage_SP862-sc-2205021 South Africa 15995_1#145 SAMEA3208885 1313 Generic.1.0 86.79 SRA category_na live 2019-04-18T15:56:51Z GPSC38 PRJEB3084 SC SC 70 2205021 2019-04-18T15:56:51Z 2015-06-23T00:00:00.000 40353 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAATXH01 2013 GPSC38 substr. ST393 2015-06-23T09:53:01Z Prokka current 70 GPS_ZA_carriage_SP862-sc-2205021 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAATXH01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-23 GPSC38 species_match 98.85 SAMEA2813979 10 Streptococcus pneumoniae 90.08 Streptococcus pneumoniae PRJEB3084 10 na 64750 type Streptococcus pneumoniae 2019-05-24 38 38 Homo sapiens 2091 Streptococcus pneumoniae Streptococcus pneumoniae ERS566347 SC 2011 2015-03-04T08:09:34.690 2118448 90.08 1313 2135 Streptococcus pneumoniae 2024-02-06T15:56:07.000 2119121 64750 2118448 blood Homo sapiens IPD from large multi-isolate project ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901235515.1 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANYN000000000.1 2015-03-03T09:52:27Z GCA_901235515.1 haploid public GPS_ZA_2237-sc-2022463 86.97 73 2018-03-10T19:37:39 GCA_053203845.1 835537 44 14913_2#5 GPS_ZA_2237-sc-2022463 South Africa 14913_2#5 SAMEA2813979 1313 Generic.1.0 86.97 SRA category_na live 2019-04-18T15:56:39Z GPSC38 PRJEB3084 SC SC 69 2022463 2019-04-18T15:56:39Z 2015-03-03T00:00:00.000 34499 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANYN01 2011 GPSC38 substr. ST393 2015-03-03T09:52:27Z Prokka current 69 GPS_ZA_2237-sc-2022463 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANYN01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-24 GPSC38 species_match 98.84 SAMEA3233378 8 Streptococcus pneumoniae 89.69 Streptococcus pneumoniae PRJEB3084 9 na 72032 type Streptococcus pneumoniae 2019-05-08 38 38 Homo sapiens 2082 Streptococcus pneumoniae Streptococcus pneumoniae ERS654571 Wellcome Sanger Institute 2009 2015-06-17T09:07:21.823 2123181 89.69 1313 2135 Streptococcus pneumoniae 2024-02-06T15:53:57.000 2124782 63932 2123177 NP swab Homo sapiens Carriage from large multi-isolate project ST6103 EBI 100 GCA_053203845.1 Annotation submitted by Wellcome Sanger Institute SLX Streptococcus pneumoniae GCA_901233375.1 type NP swab 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANQH000000000.1 2015-06-16T09:36:18Z GCA_901233375.1 haploid public GPS_GM_1502-sc-2206136 86.78 54 2018-03-10T19:54:26 GCA_053203845.1 837333 53 15873_5#69 GPS_GM_1502-sc-2206136 Gambia 15873_5#69 SAMEA3233378 1313 Generic.1.0 86.78 SRA category_na live 2019-04-18T15:39:08Z GPSC117 PRJEB3084 Wellcome Sanger Institute SC 48 2206136 2019-04-18T15:39:08Z 2015-06-16T00:00:00.000 3064 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANQH01 2009 GPSC117 substr. ST6103 2015-06-16T09:36:18Z Prokka current 48 GPS_GM_1502-sc-2206136 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANQH01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-23 GPSC117 species_match 98.73 SAMEA3171158 8 Streptococcus pneumoniae 90.69 Streptococcus pneumoniae PRJEB3084 11 na 77750 type Streptococcus pneumoniae 2019-05-22 38 38 Homo sapiens 2054 Streptococcus pneumoniae Streptococcus pneumoniae ERS625549 SC 2013 2015-04-22T09:06:31.733 2095846 90.69 1313 2101 Streptococcus pneumoniae 2024-02-06T15:52:59.000 2098575 62695 2095845 CSF Homo sapiens meningitis from large multi-isolate project ST6103 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901342875.1 type CSF 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABDTR000000000.1 2015-04-21T09:18:45Z GCA_901342875.1 haploid public GPS_MW_BIP1JU-sc-2139721 86.62 60 2018-03-10T19:45:49 GCA_053203845.1 826650 47 15378_4#24 GPS_MW_BIP1JU-sc-2139721 Malawi 15378_4#24 SAMEA3171158 1313 Generic.1.0 86.62 SRA category_na live 2019-04-18T15:32:40Z GPSC117 PRJEB3084 SC SC 48 2139721 2019-04-18T15:32:40Z 2015-04-21T00:00:00.000 GPS_MW_BIP1JU https://www.ncbi.nlm.nih.gov/Traces/wgs/CABDTR01 2013 GPSC117 substr. ST6103 2015-04-21T09:18:45Z Prokka current 48 GPS_MW_BIP1JU-sc-2139721 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABDTR01 Scaffold SOURCE_DATABASE_GENBANK Malawi 2019-05-22 GPSC117 species_match 98.75 SAMEA2521562 9 Streptococcus pneumoniae 90.54 Streptococcus pneumoniae 1313 PRJEB3084 10 current na 72829 type Streptococcus pneumoniae 2019-05-23 38 38 species Homo sapiens 2067 Streptococcus pneumoniae Streptococcus pneumoniae ERS455102 SC 2012 v1.2.4 2014-09-17T09:08:12.880 99.31 2102603 90.54 1313 2114 Streptococcus pneumoniae 2024-02-06T15:55:06.000 2103149 72829 2102601 blood Homo sapiens Streptococcus pneumoniae IPD ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900065575.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHQI00000000.2 2014-09-16T09:22:32Z GCA_900065575.2 haploid public 2012214435-sc-1946854 86.75 0.62 68 2018-03-10T19:14:16 GCA_053203845.1 829547 47 13414_2#11 2012214435-sc-1946854 USA 13414_2#11 SAMEA2521562 1313 GCF_900065575.2 Generic.1.0 86.75 SRA GCF_900065575.2 category_na live 2019-04-18T15:39:23Z GPSC38 PRJEB3084 GCF_900065575.2-RS_2026_01_24 SC SC 65 1946854 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012214435 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQI02 2012 2245STDY5819528 2014-09-16T09:22:32Z Prokka current 65 2012214435-sc-1946854 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQI02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-23 GPSC38 species_match 98.87 SAMEA2521562 9 Streptococcus pneumoniae 90.54 Streptococcus pneumoniae 1313 PRJEB3084 10 current na Best-placed reference protein set; GeneMarkS-2+ 72829 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 38 38 species Homo sapiens 1957 Streptococcus pneumoniae Streptococcus pneumoniae ERS455102 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:12.880 99.31 2102603 90.54 1313 2190 Streptococcus pneumoniae 2024-02-06T15:55:06.000 2103149 72829 2102601 blood Homo sapiens Streptococcus pneumoniae IPD 181 ST393 EBI 100 GCA_053203845.1 GCF_900065575.2-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_900065575.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHQI00000000.2 2014-09-16T09:22:32Z GCF_900065575.2 haploid public 2012214435-sc-1946854 86.75 0.62 68 2018-03-10T19:14:16 GCA_053203845.1 829547 52 13414_2#11 2012214435-sc-1946854 USA 13414_2#11 SAMEA2521562 1313 GCA_900065575.2 Generic.1.0 86.75 SRA GCA_900065575.2 category_na live 2019-04-18T15:39:23Z GPSC38 PRJEB3084 Annotation submitted by SC SC SC 65 1946854 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012214435 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQI02 2012 GPSC38 substr. ST393 6.10 2014-09-16T09:22:32Z Prokka current 65 2012214435-sc-1946854 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQI02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-23 GPSC38 species_match 98.87 SAMEA2521545 8 Streptococcus pneumoniae 89.67 Streptococcus pneumoniae 1313 PRJEB3084 9 current na 81772 type Streptococcus pneumoniae 2019-05-27 38 38 species Homo sapiens 2164 Streptococcus pneumoniae Streptococcus pneumoniae ERS455085 SC 2012 v1.2.4 2014-09-17T09:08:12.443 99.29 2160932 89.67 1313 2211 Streptococcus pneumoniae 2024-02-06T15:55:01.000 2162838 70827 2160930 blood Homo sapiens Streptococcus pneumoniae IPD ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900065175.2 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 78.8426 https://www.ncbi.nlm.nih.gov/nuccore/FHPX00000000.2 2014-09-16T09:22:33Z GCA_900065175.2 haploid public 2013208537-sc-1946836 88.31 0.62 75 2015-08-10T19:57:07 GCA_053203845.1 852910 47 13414_1#89 2013208537-sc-1946836 USA 13414_1#89 SAMEA2521545 1313 GCF_900065175.2 Generic.1.0 88.31 SRA GCF_900065175.2 category_na live 2019-04-18T15:39:23Z GPSC38 PRJEB3084 GCF_900065175.2-RS_2026_02_01 SC SC 69 1946836 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013208537 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPX02 2012 2245STDY5819510 2014-09-16T09:22:33Z Prokka current 69 2013208537-sc-1946836 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPX02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-27 GPSC38 species_match 98.82 SAMEA2521545 8 Streptococcus pneumoniae 89.67 Streptococcus pneumoniae 1313 PRJEB3084 9 current na Best-placed reference protein set; GeneMarkS-2+ 81772 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 38 38 species Homo sapiens 2027 Streptococcus pneumoniae Streptococcus pneumoniae ERS455085 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:12.443 99.29 2160932 89.67 1313 2276 Streptococcus pneumoniae 2024-02-06T15:55:01.000 2162838 70827 2160930 blood Homo sapiens Streptococcus pneumoniae IPD 195 ST393 EBI 100 GCA_053203845.1 GCF_900065175.2-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_900065175.2 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 78.8426 https://www.ncbi.nlm.nih.gov/nuccore/FHPX00000000.2 2014-09-16T09:22:33Z GCF_900065175.2 haploid public 2013208537-sc-1946836 88.31 0.62 75 2015-08-10T19:57:07 GCA_053203845.1 852910 54 13414_1#89 2013208537-sc-1946836 USA 13414_1#89 SAMEA2521545 1313 GCA_900065175.2 Generic.1.0 88.31 SRA GCA_900065175.2 category_na live 2019-04-18T15:39:23Z GPSC38 PRJEB3084 Annotation submitted by SC SC SC 69 1946836 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013208537 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPX02 2012 GPSC38 substr. ST393 6.10 2014-09-16T09:22:33Z Prokka current 69 2013208537-sc-1946836 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPX02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-27 GPSC38 species_match 98.82 SAMEA2521667 10 Streptococcus pneumoniae 90.22 Streptococcus pneumoniae 1313 PRJEB3084 11 current na 69128 type Streptococcus pneumoniae 2019-05-27 38 38 species Homo sapiens 2130 Streptococcus pneumoniae Streptococcus pneumoniae ERS455207 SC 2012 v1.2.4 2014-09-17T09:08:16.573 99.31 2144820 90.22 1313 2176 Streptococcus pneumoniae 2024-02-06T15:55:10.000 2145435 66219 2144816 blood Homo sapiens Streptococcus pneumoniae IPD ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900063185.2 type blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHTI00000000.2 2014-09-16T09:22:33Z GCA_900063185.2 haploid public 2013206355-sc-1946960 88.19 0.62 68 2015-08-10T19:57:11 GCA_053203845.1 846528 46 13414_3#21 2013206355-sc-1946960 USA 13414_3#21 SAMEA2521667 1313 GCF_900063185.2 Generic.1.0 88.19 SRA GCF_900063185.2 category_na live 2019-04-18T15:39:24Z GPSC38 PRJEB3084 GCF_900063185.2-RS_2026_01_31 SC SC 66 1946960 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2013206355 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHTI02 2012 2245STDY5819634 2014-09-16T09:22:33Z Prokka current 66 2013206355-sc-1946960 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHTI02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-27 GPSC38 species_match 98.8 SAMEA2521667 10 Streptococcus pneumoniae 90.22 Streptococcus pneumoniae 1313 PRJEB3084 11 current na Best-placed reference protein set; GeneMarkS-2+ 69128 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 38 38 species Homo sapiens 2004 Streptococcus pneumoniae Streptococcus pneumoniae ERS455207 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:16.573 99.31 2144820 90.22 1313 2247 Streptococcus pneumoniae 2024-02-06T15:55:10.000 2145435 66219 2144816 blood Homo sapiens Streptococcus pneumoniae IPD 191 ST393 EBI 100 GCA_053203845.1 GCF_900063185.2-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_900063185.2 type blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHTI00000000.2 2014-09-16T09:22:33Z GCF_900063185.2 haploid public 2013206355-sc-1946960 88.19 0.62 68 2015-08-10T19:57:11 GCA_053203845.1 846528 52 13414_3#21 2013206355-sc-1946960 USA 13414_3#21 SAMEA2521667 1313 GCA_900063185.2 Generic.1.0 88.19 SRA GCA_900063185.2 category_na live 2019-04-18T15:39:24Z GPSC38 PRJEB3084 Annotation submitted by SC SC SC 66 1946960 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2013206355 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHTI02 2012 GPSC38 substr. ST393 6.10 2014-09-16T09:22:33Z Prokka current 66 2013206355-sc-1946960 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHTI02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-27 GPSC38 species_match 98.8 SAMEA2239131 9 Streptococcus pneumoniae 90.45 Streptococcus pneumoniae 1313 PRJEB4909 12 current na 69127 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2072 Streptococcus pneumoniae Streptococcus pneumoniae ERS367943 SC 2006/2012 v1.2.4 2014-05-07T08:35:22.726 99.31 2105708 90.45 1313 2119 2024-02-06T05:03:59.000 2108350 56752 2105708 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900023855.1 type CSF 98.88 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FDRI00000000.1 2014-03-18T09:35:29Z GCA_900023855.1 haploid public 2000405-sc-2013-11-05T12:08:26Z-1750502 86.8 0.62 73 2015-08-10T19:24:43 GCA_053203845.1 830787 47 11860_7#92 2000405-sc-2013-11-05T12:08:26Z-1750502 Netherlands 11860_7#92 SAMEA2239131 1313 GCF_900023855.1 Generic.1.0 86.8 SRA GCF_900023855.1 category_na live 2018-03-09T10:27:38Z 2842STDY5644513 PRJEB4909 GCF_900023855.1-RS_2025_09_21 SC SC 63 1750502 2018-03-09T10:27:38Z 2014-03-18T00:00:00.000 2000405 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRI01 2006/2012 2842STDY5644513 2014-03-18T09:35:29Z Prokka current 63 2000405-sc-2013-11-05T12:08:26Z-1750502 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRI01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644513 species_match 98.88 SAMEA2239131 9 Streptococcus pneumoniae 90.45 Streptococcus pneumoniae 1313 PRJEB4909 12 current na Best-placed reference protein set; GeneMarkS-2+ 69127 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1951 Streptococcus pneumoniae Streptococcus pneumoniae ERS367943 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:22.726 99.31 2105708 90.45 1313 2195 2024-02-06T05:03:59.000 2108350 56752 2105708 CSF Homo sapiens Streptococcus pneumoniae Disease 192 EBI 100 GCA_053203845.1 GCF_900023855.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900023855.1 type CSF 98.88 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FDRI00000000.1 2014-03-18T09:35:29Z GCF_900023855.1 haploid public 2000405-sc-2013-11-05T12:08:26Z-1750502 86.8 0.62 73 2015-08-10T19:24:43 GCA_053203845.1 830787 52 11860_7#92 2000405-sc-2013-11-05T12:08:26Z-1750502 Netherlands 11860_7#92 SAMEA2239131 1313 GCA_900023855.1 Generic.1.0 86.8 SRA GCA_900023855.1 category_na live 2018-03-09T10:27:38Z 2842STDY5644513 PRJEB4909 Annotation submitted by SC SC SC 63 1750502 2018-03-09T10:27:38Z 2014-03-18T00:00:00.000 2000405 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRI01 2006/2012 2842STDY5644513 6.10 2014-03-18T09:35:29Z Prokka current 63 2000405-sc-2013-11-05T12:08:26Z-1750502 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRI01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644513 species_match 98.88 SAMEA2383237 11 Streptococcus pneumoniae 90.23 Streptococcus pneumoniae 1313 PRJEB4909 12 current na 55904 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2089 Streptococcus pneumoniae Streptococcus pneumoniae ERS409562 SC 2006/2012 v1.2.4 2014-07-17T08:09:40.803 99.31 2114950 90.23 1313 2135 2024-02-06T06:55:35.000 2115711 55904 2114943 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900030395.1 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FEMX00000000.1 2014-07-16T11:40:12Z GCA_900030395.1 haploid public 2120175_II-sc-1870489 86.97 0.62 81 2015-08-10T19:44:23 GCA_053203845.1 834211 46 12754_4#27 2120175_II-sc-1870489 Netherlands 12754_4#27 SAMEA2383237 1313 GCF_900030395.1 Generic.1.0 86.97 SRA GCF_900030395.1 category_na live 2018-03-09T10:42:59Z 2842STDY5753784 PRJEB4909 GCF_900030395.1-RS_2026_01_11 SC SC 74 1870489 2018-03-09T10:42:59Z 2014-07-16T00:00:00.000 2120175_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEMX01 2006/2012 2842STDY5753784 2014-07-16T11:40:12Z Prokka current 74 2120175_II-sc-1870489 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEMX01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753784 species_match 98.85 SAMEA2383237 11 Streptococcus pneumoniae 90.23 Streptococcus pneumoniae 1313 PRJEB4909 12 current na Best-placed reference protein set; GeneMarkS-2+ 55904 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1968 Streptococcus pneumoniae Streptococcus pneumoniae ERS409562 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:40.803 99.31 2114950 90.23 1313 2222 2024-02-06T06:55:35.000 2115711 55904 2114943 blood Homo sapiens Streptococcus pneumoniae Disease 203 EBI 100 GCA_053203845.1 GCF_900030395.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900030395.1 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FEMX00000000.1 2014-07-16T11:40:12Z GCF_900030395.1 haploid public 2120175_II-sc-1870489 86.97 0.62 81 2015-08-10T19:44:23 GCA_053203845.1 834211 51 12754_4#27 2120175_II-sc-1870489 Netherlands 12754_4#27 SAMEA2383237 1313 GCA_900030395.1 Generic.1.0 86.97 SRA GCA_900030395.1 category_na live 2018-03-09T10:42:59Z 2842STDY5753784 PRJEB4909 Annotation submitted by SC SC SC 74 1870489 2018-03-09T10:42:59Z 2014-07-16T00:00:00.000 2120175_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEMX01 2006/2012 2842STDY5753784 6.10 2014-07-16T11:40:12Z Prokka current 74 2120175_II-sc-1870489 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEMX01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753784 species_match 98.85 SAMEA2382585 10 Streptococcus pneumoniae 90.04 Streptococcus pneumoniae 1313 PRJEB4909 12 current na 66155 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2093 Streptococcus pneumoniae Streptococcus pneumoniae ERS408910 SC 2006/2012 v1.2.4 2014-07-03T08:07:01.143 99.31 2119834 90.04 1313 2139 2024-02-06T09:23:30.000 2121203 55448 2119830 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900035365.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FCXO00000000.1 2014-07-02T15:07:57Z GCA_900035365.1 haploid public 2120175-sc-1869830 86.99 0.62 76 2015-08-10T19:42:10 GCA_053203845.1 836098 46 12673_6#40 2120175-sc-1869830 Netherlands 12673_6#40 SAMEA2382585 1313 GCF_900035365.1 Generic.1.0 86.99 SRA GCF_900035365.1 category_na live 2018-03-09T13:35:53Z 2842STDY5753125 PRJEB4909 GCF_900035365.1-RS_2026_01_11 SC SC 70 1869830 2018-03-09T13:35:53Z 2014-07-02T00:00:00.000 2120175 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCXO01 2006/2012 2842STDY5753125 2014-07-02T15:07:57Z Prokka current 70 2120175-sc-1869830 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCXO01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753125 species_match 98.85 SAMEA2382585 10 Streptococcus pneumoniae 90.04 Streptococcus pneumoniae 1313 PRJEB4909 12 current na Best-placed reference protein set; GeneMarkS-2+ 66155 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1975 Streptococcus pneumoniae Streptococcus pneumoniae ERS408910 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-03T08:07:01.143 99.31 2119834 90.04 1313 2213 2024-02-06T09:23:30.000 2121203 55448 2119830 CSF Homo sapiens Streptococcus pneumoniae Disease 187 EBI 100 GCA_053203845.1 GCF_900035365.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900035365.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FCXO00000000.1 2014-07-02T15:07:57Z GCF_900035365.1 haploid public 2120175-sc-1869830 86.99 0.62 76 2015-08-10T19:42:10 GCA_053203845.1 836098 51 12673_6#40 2120175-sc-1869830 Netherlands 12673_6#40 SAMEA2382585 1313 GCA_900035365.1 Generic.1.0 86.99 SRA GCA_900035365.1 category_na live 2018-03-09T13:35:53Z 2842STDY5753125 PRJEB4909 Annotation submitted by SC SC SC 70 1869830 2018-03-09T13:35:53Z 2014-07-02T00:00:00.000 2120175 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCXO01 2006/2012 2842STDY5753125 6.10 2014-07-02T15:07:57Z Prokka current 70 2120175-sc-1869830 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCXO01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753125 species_match 98.85 SAMEA2203823 10 Streptococcus pneumoniae 90.41 Streptococcus pneumoniae 1313 PRJEB3084 12 current na 69526 type Streptococcus pneumoniae 2019-05-23 38 38 species Homo sapiens 2077 Streptococcus pneumoniae Streptococcus pneumoniae ERS356327 SC 2009 v1.2.4 2014-02-28T18:05:45.106 99.22 2106391 90.41 1313 2123 Streptococcus pneumoniae 2024-02-06T15:54:48.000 2108390 55446 2106389 blood Homo sapiens Streptococcus pneumoniae Bacteremia ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900043765.2 type blood 98.88 ERC000011 OK 39.5 Streptococcus pneumoniae 71.0838 https://www.ncbi.nlm.nih.gov/nuccore/FFSL00000000.2 2014-02-18T09:19:59Z GCA_900043765.2 haploid public 2010223357-sc-2013-10-09T11:50:04Z-1712412 86.79 0.62 68 2015-08-10T19:05:35 GCA_053203845.1 830998 46 11679_1#19 2010223357-sc-2013-10-09T11:50:04Z-1712412 USA 11679_1#19 SAMEA2203823 1313 GCF_900043765.2 Generic.1.0 86.79 SRA GCF_900043765.2 category_na live 2019-04-18T15:39:18Z GPSC38 PRJEB3084 GCF_900043765.2-RS_2026_01_31 SC SC 60 1712412 2019-04-18T15:39:18Z 2014-02-18T00:00:00.000 2010223357 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFSL02 2009 2245STDY5608962 2014-02-18T09:19:59Z Prokka current 60 2010223357-sc-2013-10-09T11:50:04Z-1712412 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFSL02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-23 GPSC38 species_match 98.88 SAMEA2203823 10 Streptococcus pneumoniae 90.41 Streptococcus pneumoniae 1313 PRJEB3084 12 current na Best-placed reference protein set; GeneMarkS-2+ 69526 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 38 38 species Homo sapiens 1941 Streptococcus pneumoniae Streptococcus pneumoniae ERS356327 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-02-28T18:05:45.106 99.22 2106391 90.41 1313 2181 Streptococcus pneumoniae 2024-02-06T15:54:48.000 2108390 55446 2106389 blood Homo sapiens Streptococcus pneumoniae Bacteremia 189 ST393 EBI 100 GCA_053203845.1 GCF_900043765.2-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_900043765.2 type blood 98.88 ERC000011 OK 39.5 Streptococcus pneumoniae 71.0838 https://www.ncbi.nlm.nih.gov/nuccore/FFSL00000000.2 2014-02-18T09:19:59Z GCF_900043765.2 haploid public 2010223357-sc-2013-10-09T11:50:04Z-1712412 86.79 0.62 68 2015-08-10T19:05:35 GCA_053203845.1 830998 51 11679_1#19 2010223357-sc-2013-10-09T11:50:04Z-1712412 USA 11679_1#19 SAMEA2203823 1313 GCA_900043765.2 Generic.1.0 86.79 SRA GCA_900043765.2 category_na live 2019-04-18T15:39:18Z GPSC38 PRJEB3084 Annotation submitted by SC SC SC 60 1712412 2019-04-18T15:39:18Z 2014-02-18T00:00:00.000 2010223357 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFSL02 2009 GPSC38 substr. ST393 6.10 2014-02-18T09:19:59Z Prokka current 60 2010223357-sc-2013-10-09T11:50:04Z-1712412 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFSL02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-23 GPSC38 species_match 98.88 SAMEA2203879 11 Streptococcus pneumoniae 90.15 Streptococcus pneumoniae 1313 PRJEB3084 13 current na 60492 type Streptococcus pneumoniae 2019-05-27 38 38 species Homo sapiens 2147 Streptococcus pneumoniae Streptococcus pneumoniae ERS356383 SC 2009 v1.2.4 2014-02-28T18:05:49.670 99.31 2152029 90.15 1313 2193 Streptococcus pneumoniae 2024-02-06T15:54:49.000 2154234 53955 2152026 blood Homo sapiens Streptococcus pneumoniae Bacteremia ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900033935.2 type blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FFUH00000000.2 2014-02-10T13:39:45Z GCA_900033935.2 haploid public 2009210929-sc-2013-10-09T11:51:05Z-1712469 88.41 0.62 71 2015-08-10T19:05:37 GCA_053203845.1 849185 46 11511_8#30 2009210929-sc-2013-10-09T11:51:05Z-1712469 USA 11511_8#30 SAMEA2203879 1313 GCF_900033935.2 Generic.1.0 88.41 SRA GCF_900033935.2 category_na live 2019-04-18T15:39:19Z GPSC38 PRJEB3084 GCF_900033935.2-RS_2026_01_31 SC SC 60 1712469 2019-04-18T15:39:19Z 2014-02-10T00:00:00.000 2009210929 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFUH02 2009 2245STDY5609019 2014-02-10T13:39:45Z Prokka current 60 2009210929-sc-2013-10-09T11:51:05Z-1712469 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFUH02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-27 GPSC38 species_match 98.79 SAMEA2203879 11 Streptococcus pneumoniae 90.15 Streptococcus pneumoniae 1313 PRJEB3084 13 current na Best-placed reference protein set; GeneMarkS-2+ 60492 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 38 38 species Homo sapiens 2005 Streptococcus pneumoniae Streptococcus pneumoniae ERS356383 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-02-28T18:05:49.670 99.31 2152029 90.15 1313 2255 Streptococcus pneumoniae 2024-02-06T15:54:49.000 2154234 53955 2152026 blood Homo sapiens Streptococcus pneumoniae Bacteremia 197 ST393 EBI 100 GCA_053203845.1 GCF_900033935.2-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_900033935.2 type blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FFUH00000000.2 2014-02-10T13:39:45Z GCF_900033935.2 haploid public 2009210929-sc-2013-10-09T11:51:05Z-1712469 88.41 0.62 71 2015-08-10T19:05:37 GCA_053203845.1 849185 53 11511_8#30 2009210929-sc-2013-10-09T11:51:05Z-1712469 USA 11511_8#30 SAMEA2203879 1313 GCA_900033935.2 Generic.1.0 88.41 SRA GCA_900033935.2 category_na live 2019-04-18T15:39:19Z GPSC38 PRJEB3084 Annotation submitted by SC SC SC 60 1712469 2019-04-18T15:39:19Z 2014-02-10T00:00:00.000 2009210929 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFUH02 2009 GPSC38 substr. ST393 6.10 2014-02-10T13:39:45Z Prokka current 60 2009210929-sc-2013-10-09T11:51:05Z-1712469 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFUH02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-27 GPSC38 species_match 98.79 SAMEA2521546 11 Streptococcus pneumoniae 88.74 Streptococcus pneumoniae 1313 PRJEB3084 12 current na 56356 type Streptococcus pneumoniae 2019-05-27 38 38 species Homo sapiens 2100 Streptococcus pneumoniae Streptococcus pneumoniae ERS455086 SC 2012 v1.2.4 2014-09-17T09:08:12.480 99.31 2145683 88.74 1313 2147 Streptococcus pneumoniae 2024-02-06T15:55:05.000 2146435 53567 2145682 blood Homo sapiens Streptococcus pneumoniae IPD ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900057005.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHPY00000000.2 2014-09-16T09:22:33Z GCA_900057005.2 haploid public 2013208538-sc-1946837 86.77 0.62 78 2015-08-10T19:57:07 GCA_053203845.1 845505 47 13414_1#90 2013208538-sc-1946837 USA 13414_1#90 SAMEA2521546 1313 GCF_900057005.2 Generic.1.0 86.77 SRA GCF_900057005.2 category_na live 2019-04-18T15:39:23Z GPSC38 PRJEB3084 GCF_900057005.2-RS_2026_02_01 SC SC 75 1946837 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013208538 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPY02 2012 2245STDY5819511 2014-09-16T09:22:33Z Prokka current 75 2013208538-sc-1946837 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPY02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-27 GPSC38 species_match 98.87 SAMEA2521546 11 Streptococcus pneumoniae 88.74 Streptococcus pneumoniae 1313 PRJEB3084 12 current na Best-placed reference protein set; GeneMarkS-2+ 56356 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 38 38 species Homo sapiens 1973 Streptococcus pneumoniae Streptococcus pneumoniae ERS455086 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:12.480 99.31 2145683 88.74 1313 2226 Streptococcus pneumoniae 2024-02-06T15:55:05.000 2146435 53567 2145682 blood Homo sapiens Streptococcus pneumoniae IPD 200 ST393 EBI 100 GCA_053203845.1 GCF_900057005.2-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_900057005.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHPY00000000.2 2014-09-16T09:22:33Z GCF_900057005.2 haploid public 2013208538-sc-1946837 86.77 0.62 78 2015-08-10T19:57:07 GCA_053203845.1 845505 53 13414_1#90 2013208538-sc-1946837 USA 13414_1#90 SAMEA2521546 1313 GCA_900057005.2 Generic.1.0 86.77 SRA GCA_900057005.2 category_na live 2019-04-18T15:39:23Z GPSC38 PRJEB3084 Annotation submitted by SC SC SC 75 1946837 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013208538 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPY02 2012 GPSC38 substr. ST393 6.10 2014-09-16T09:22:33Z Prokka current 75 2013208538-sc-1946837 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPY02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-27 GPSC38 species_match 98.87 SAMEA2796739 10 Streptococcus pneumoniae 88.97 Streptococcus pneumoniae 1313 PRJEB3084 11 current na 55144 type Streptococcus pneumoniae 2019-05-24 38 38 species Homo sapiens 2080 Streptococcus pneumoniae Streptococcus pneumoniae ERS558350 SC 2009 v1.2.4 2015-01-30T08:09:22.166 99.1 2119175 88.97 1313 2128 Streptococcus pneumoniae 2024-02-06T15:55:30.000 2120605 49669 2119171 blood Homo sapiens Streptococcus pneumoniae IPD ST393 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900054235.2 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FHWC00000000.2 2015-01-27T09:20:51Z GCA_900054235.2 haploid public GPS_US_2009217666_R1-sc-2138723 85.92 0.62 70 2015-08-11T22:01:00 GCA_053203845.1 839288 48 14673_4#46 GPS_US_2009217666_R1-sc-2138723 USA 14673_4#46 SAMEA2796739 1313 GCF_900054235.2 Generic.1.0 85.92 SRA GCF_900054235.2 category_na live 2019-04-18T15:39:29Z GPSC38 PRJEB3084 GCF_900054235.2-RS_2026_01_31 SC SC 65 2138723 2019-04-18T15:39:29Z 2015-01-27T00:00:00.000 2009217666 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHWC02 2009 2245STDY5982765 2015-01-27T09:20:51Z Prokka current 65 GPS_US_2009217666_R1-sc-2138723 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHWC02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-24 GPSC38 species_match 98.86 SAMEA2796739 10 Streptococcus pneumoniae 88.97 Streptococcus pneumoniae 1313 PRJEB3084 11 current na Best-placed reference protein set; GeneMarkS-2+ 55144 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 38 38 species Homo sapiens 1952 Streptococcus pneumoniae Streptococcus pneumoniae ERS558350 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2015-01-30T08:09:22.166 99.1 2119175 88.97 1313 2199 Streptococcus pneumoniae 2024-02-06T15:55:30.000 2120605 49669 2119171 blood Homo sapiens Streptococcus pneumoniae IPD 194 ST393 EBI 100 GCA_053203845.1 GCF_900054235.2-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_900054235.2 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FHWC00000000.2 2015-01-27T09:20:51Z GCF_900054235.2 haploid public GPS_US_2009217666_R1-sc-2138723 85.92 0.62 70 2015-08-11T22:01:00 GCA_053203845.1 839288 53 14673_4#46 GPS_US_2009217666_R1-sc-2138723 USA 14673_4#46 SAMEA2796739 1313 GCA_900054235.2 Generic.1.0 85.92 SRA GCA_900054235.2 category_na live 2019-04-18T15:39:29Z GPSC38 PRJEB3084 Annotation submitted by SC SC SC 65 2138723 2019-04-18T15:39:29Z 2015-01-27T00:00:00.000 2009217666 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHWC02 2009 GPSC38 substr. ST393 6.10 2015-01-27T09:20:51Z Prokka current 65 GPS_US_2009217666_R1-sc-2138723 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHWC02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-24 GPSC38 species_match 98.86 SAMEA1026225 7 Streptococcus pneumoniae 89.17 Streptococcus pneumoniae 1313 PRJEB2397 7 current na 102539 type Streptococcus pneumoniae 2015-07-13 40 40 species Homo sapiens 2175 Streptococcus pneumoniae Streptococcus pneumoniae ERS021497 SC 2009-10-16 v1.2.4 2012-01-20T20:04:20.200 99.1 2159350 89.17 1313 2215 2024-02-06T09:03:56.000 2159365 93468 2159328 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001134925.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CKXF00000000.1 2011-12-05T16:07:36Z GCA_001134925.1 haploid public SMRU1987-sc-2011-01-27-1062200 91.22 0.31 51 2015-07-28T08:12:12 GCA_001457635.1 852363 40 6823_6#19 SMRU1987-sc-2011-01-27-1062200 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026225 1313 GCF_001134925.1 Generic.1.0 91.22 SRA GCF_001134925.1 category_na live 2018-03-09T12:04:52Z SMRU1987 PRJEB2397 GCF_001134925.1-RS_2026_02_02 SC SC 50 2018-03-09T12:04:52Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKXF01 2009-10-16 SMRU1987 2011-12-05T16:07:36Z Prokka current 50 SMRU1987-sc-2011-01-27-1062200 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKXF01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU1987 species_match 98.72 SAMEA1026225 7 Streptococcus pneumoniae 89.17 Streptococcus pneumoniae 1313 PRJEB2397 7 current na Best-placed reference protein set; GeneMarkS-2+ 102539 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-02 40 40 species Homo sapiens 2059 Streptococcus pneumoniae Streptococcus pneumoniae ERS021497 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-10-16 v1.2.4 2012-01-20T20:04:20.200 99.1 2159350 89.17 1313 2285 2024-02-06T09:03:56.000 2159365 93468 2159328 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 183 EBI 100 GCA_001457635.1 GCF_001134925.1-RS_2026_02_02 SLX Streptococcus pneumoniae GCF_001134925.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CKXF00000000.1 2011-12-05T16:07:36Z GCF_001134925.1 haploid public SMRU1987-sc-2011-01-27-1062200 91.22 0.31 51 2015-07-28T08:12:12 GCA_001457635.1 852363 43 6823_6#19 SMRU1987-sc-2011-01-27-1062200 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026225 1313 GCA_001134925.1 Generic.1.0 91.22 SRA GCA_001134925.1 category_na live 2018-03-09T12:04:52Z SMRU1987 PRJEB2397 Annotation submitted by SC SC SC 50 2018-03-09T12:04:52Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKXF01 2009-10-16 SMRU1987 6.10 2011-12-05T16:07:36Z Prokka current 50 SMRU1987-sc-2011-01-27-1062200 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKXF01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU1987 species_match 98.72 SAMEA1025560 10 Streptococcus pneumoniae 89.03 Streptococcus pneumoniae 1313 PRJEB2395 10 current na 83245 type Streptococcus pneumoniae 2015-07-18 40 40 species Homo sapiens 2152 Streptococcus pneumoniae Streptococcus pneumoniae ERS020948 SC 2009-04-16 v1.2.4 2012-01-20T19:58:19.030 99.1 2157462 89.03 1313 2195 2024-02-06T09:03:58.000 2157490 83245 2157440 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001199215.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CRSG00000000.1 2011-11-29T12:03:48Z GCA_001199215.1 haploid public SMRU1438-sc-2011-01-27-1061651 90.99 0.39 61 2015-07-28T08:11:51 GCA_001457635.1 852046 43 6805_2#22 SMRU1438-sc-2011-01-27-1061651 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025560 1313 GCF_001199215.1 Generic.1.0 90.99 SRA GCF_001199215.1 category_na live 2018-03-09T12:05:15Z SMRU1438 PRJEB2395 GCF_001199215.1-RS_2026_02_02 SC SC 59 2018-03-09T12:05:15Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRSG01 2009-04-16 SMRU1438 2011-11-29T12:03:48Z Prokka current 59 SMRU1438-sc-2011-01-27-1061651 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRSG01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1438 species_match 98.73 SAMEA1025560 10 Streptococcus pneumoniae 89.03 Streptococcus pneumoniae 1313 PRJEB2395 10 current na Best-placed reference protein set; GeneMarkS-2+ 83245 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-02 40 40 species Homo sapiens 2069 Streptococcus pneumoniae Streptococcus pneumoniae ERS020948 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-16 v1.2.4 2012-01-20T19:58:19.030 99.1 2157462 89.03 1313 2297 2024-02-06T09:03:58.000 2157490 83245 2157440 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 182 EBI 100 GCA_001457635.1 GCF_001199215.1-RS_2026_02_02 SLX Streptococcus pneumoniae GCF_001199215.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CRSG00000000.1 2011-11-29T12:03:48Z GCF_001199215.1 haploid public SMRU1438-sc-2011-01-27-1061651 90.99 0.39 61 2015-07-28T08:11:51 GCA_001457635.1 852046 46 6805_2#22 SMRU1438-sc-2011-01-27-1061651 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025560 1313 GCA_001199215.1 Generic.1.0 90.99 SRA GCA_001199215.1 category_na live 2018-03-09T12:05:15Z SMRU1438 PRJEB2395 Annotation submitted by SC SC SC 59 2018-03-09T12:05:15Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRSG01 2009-04-16 SMRU1438 6.10 2011-11-29T12:03:48Z Prokka current 59 SMRU1438-sc-2011-01-27-1061651 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRSG01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1438 species_match 98.73 SAMEA1025171 9 Streptococcus pneumoniae 89.4 Streptococcus pneumoniae 1313 PRJEB2395 9 current na 88206 type Streptococcus pneumoniae 2015-07-27 40 40 species Homo sapiens 2178 Streptococcus pneumoniae Streptococcus pneumoniae ERS021012 SC 2009-03-30 v1.2.4 2012-01-20T19:59:00.963 98.48 2174360 89.4 1313 2219 2024-02-05T16:26:41.000 2174371 82460 2174340 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001340535.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 17.8798 https://www.ncbi.nlm.nih.gov/nuccore/CIBZ00000000.1 2011-11-15T17:01:01Z GCA_001340535.1 haploid public SMRU1502-sc-2011-01-27-1061715 88.59 1.82 53 2015-07-28T08:11:43 GCA_053203845.1 858555 41 6753_2#13 SMRU1502-sc-2011-01-27-1061715 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025171 1313 GCF_001340535.1 Generic.1.0 88.59 SRA GCF_001340535.1 category_na live 2018-03-09T09:53:02Z SMRU1502 PRJEB2395 GCF_001340535.1-RS_2026_02_04 SC SC 52 2018-03-09T09:53:02Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIBZ01 2009-03-30 SMRU1502 2011-11-15T17:01:01Z Prokka current 52 SMRU1502-sc-2011-01-27-1061715 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CIBZ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU1502 species_match 98.74 SAMEA1025171 9 Streptococcus pneumoniae 89.4 Streptococcus pneumoniae 1313 PRJEB2395 9 current na Best-placed reference protein set; GeneMarkS-2+ 88206 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-04 40 40 species Homo sapiens 2105 Streptococcus pneumoniae Streptococcus pneumoniae ERS021012 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-30 v1.2.4 2012-01-20T19:59:00.963 98.48 2174360 89.4 1313 2311 2024-02-05T16:26:41.000 2174371 82460 2174340 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 162 EBI 100 GCA_053203845.1 GCF_001340535.1-RS_2026_02_04 SLX Streptococcus pneumoniae GCF_001340535.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 17.8798 https://www.ncbi.nlm.nih.gov/nuccore/CIBZ00000000.1 2011-11-15T17:01:01Z GCF_001340535.1 haploid public SMRU1502-sc-2011-01-27-1061715 88.59 1.82 53 2015-07-28T08:11:43 GCA_053203845.1 858555 44 6753_2#13 SMRU1502-sc-2011-01-27-1061715 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025171 1313 GCA_001340535.1 Generic.1.0 88.59 SRA GCA_001340535.1 category_na live 2018-03-09T09:53:02Z SMRU1502 PRJEB2395 Annotation submitted by SC SC SC 52 2018-03-09T09:53:02Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIBZ01 2009-03-30 SMRU1502 6.10 2011-11-15T17:01:01Z Prokka current 52 SMRU1502-sc-2011-01-27-1061715 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CIBZ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU1502 species_match 98.74 SAMEA1025345 11 Streptococcus pneumoniae 87.5 Streptococcus pneumoniae 1313 PRJEB2395 11 current na 72189 type Streptococcus pneumoniae 2015-07-18 46 46 species Homo sapiens 2192 Streptococcus pneumoniae Streptococcus pneumoniae ERS020893 SC 2009-03-26 v1.2.4 2012-01-20T19:57:41.550 97.88 2186091 87.5 1313 2232 2024-02-05T16:13:27.000 2186145 72189 2186069 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001197155.1 type nasopharynx 98.37 OK 39.5 Streptococcus pneumoniae 6.07516 https://www.ncbi.nlm.nih.gov/nuccore/CQVA00000000.1 2011-11-15T17:01:00Z GCA_001197155.1 haploid public SMRU1383-sc-2011-01-27-1061596 87.17 1.66 58 2015-07-28T08:11:39 GCA_053203845.1 863818 40 6710_7#15 SMRU1383-sc-2011-01-27-1061596 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025345 1313 GCF_001197155.1 Generic.1.0 87.17 SRA GCF_001197155.1 category_na live 2018-03-09T09:52:53Z SMRU1383 PRJEB2395 GCF_001197155.1-RS_2026_02_08 SC SC 55 2018-03-09T09:52:53Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQVA01 2009-03-26 SMRU1383 2011-11-15T17:01:00Z Prokka current 55 SMRU1383-sc-2011-01-27-1061596 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQVA01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1383 species_match 98.37 SAMEA1025345 11 Streptococcus pneumoniae 87.5 Streptococcus pneumoniae 1313 PRJEB2395 11 current na Best-placed reference protein set; GeneMarkS-2+ 72189 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-08 46 46 species Homo sapiens 2076 Streptococcus pneumoniae Streptococcus pneumoniae ERS020893 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-26 v1.2.4 2012-01-20T19:57:41.550 97.88 2186091 87.5 1313 2307 2024-02-05T16:13:27.000 2186145 72189 2186069 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 189 EBI 100 GCA_053203845.1 GCF_001197155.1-RS_2026_02_08 SLX Streptococcus pneumoniae GCF_001197155.1 type nasopharynx 98.37 OK 39.5 Streptococcus pneumoniae 6.07516 https://www.ncbi.nlm.nih.gov/nuccore/CQVA00000000.1 2011-11-15T17:01:00Z GCF_001197155.1 haploid public SMRU1383-sc-2011-01-27-1061596 87.17 1.66 58 2015-07-28T08:11:39 GCA_053203845.1 863818 42 6710_7#15 SMRU1383-sc-2011-01-27-1061596 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025345 1313 GCA_001197155.1 Generic.1.0 87.17 SRA GCA_001197155.1 category_na live 2018-03-09T09:52:53Z SMRU1383 PRJEB2395 Annotation submitted by SC SC SC 55 2018-03-09T09:52:53Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQVA01 2009-03-26 SMRU1383 6.10 2011-11-15T17:01:00Z Prokka current 55 SMRU1383-sc-2011-01-27-1061596 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQVA01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1383 species_match 98.37 SAMEA1024610 10 Streptococcus pneumoniae 90.52 Streptococcus pneumoniae 1313 PRJEB2393 10 current na 68896 type Streptococcus pneumoniae 2015-07-23 40 40 species Homo sapiens 2112 Streptococcus pneumoniae Streptococcus pneumoniae ERS020286 SC 2008-08-12 v1.2.4 2012-01-20T19:50:57.890 99.1 2137981 90.52 1313 2150 2024-02-06T09:04:15.000 2137981 68896 2137959 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001337375.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CFBF00000000.1 2011-11-15T17:01:01Z GCA_001337375.1 haploid public SMRU776-sc-2011-01-27-1060965 88.2 0.57 64 2015-07-28T08:11:23 GCA_053203845.1 843912 38 6755_1#8 SMRU776-sc-2011-01-27-1060965 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024610 1313 GCF_001337375.1 Generic.1.0 88.2 SRA GCF_001337375.1 category_na live 2018-03-09T12:10:32Z SMRU776 PRJEB2393 GCF_001337375.1-RS_2026_01_21 SC SC 64 2018-03-09T12:10:32Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFBF01 2008-08-12 SMRU776 2011-11-15T17:01:01Z Prokka current 64 SMRU776-sc-2011-01-27-1060965 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFBF01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-01 SMRU776 species_match 98.76 SAMEA1024610 10 Streptococcus pneumoniae 90.52 Streptococcus pneumoniae 1313 PRJEB2393 10 current na Best-placed reference protein set; GeneMarkS-2+ 68896 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-21 40 40 species Homo sapiens 2053 Streptococcus pneumoniae Streptococcus pneumoniae ERS020286 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-08-12 v1.2.4 2012-01-20T19:50:57.890 99.1 2137981 90.52 1313 2264 2024-02-06T09:04:15.000 2137981 68896 2137959 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 169 EBI 100 GCA_053203845.1 GCF_001337375.1-RS_2026_01_21 SLX Streptococcus pneumoniae GCF_001337375.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CFBF00000000.1 2011-11-15T17:01:01Z GCF_001337375.1 haploid public SMRU776-sc-2011-01-27-1060965 88.2 0.57 64 2015-07-28T08:11:23 GCA_053203845.1 843912 42 6755_1#8 SMRU776-sc-2011-01-27-1060965 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024610 1313 GCA_001337375.1 Generic.1.0 88.2 SRA GCA_001337375.1 category_na live 2018-03-09T12:10:32Z SMRU776 PRJEB2393 Annotation submitted by SC SC SC 64 2018-03-09T12:10:32Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFBF01 2008-08-12 SMRU776 6.10 2011-11-15T17:01:01Z Prokka current 64 SMRU776-sc-2011-01-27-1060965 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFBF01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-01 SMRU776 species_match 98.76 SAMEA2382699 10 Streptococcus pneumoniae 90.42 Streptococcus pneumoniae 1313 PRJEB4909 11 current na 66204 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2076 Streptococcus pneumoniae Streptococcus pneumoniae ERS409024 SC 2006/2012 v1.2.4 2014-07-03T08:07:07.696 99.31 2106831 90.42 1313 2123 2024-02-06T06:47:44.000 2108218 66204 2106831 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900043005.1 type blood 98.88 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FDDK00000000.1 2014-07-02T15:07:57Z GCA_900043005.1 haploid public 2000405_II-sc-1869945 86.81 0.62 67 2018-03-10T19:05:12 GCA_053203845.1 831237 47 12673_7#59 2000405_II-sc-1869945 Netherlands 12673_7#59 SAMEA2382699 1313 GCF_900043005.1 Generic.1.0 86.81 SRA GCF_900043005.1 category_na live 2018-03-09T10:41:42Z 2842STDY5753240 PRJEB4909 GCF_900043005.1-RS_2025_09_21 SC SC 62 1869945 2018-03-09T10:41:42Z 2014-07-02T00:00:00.000 2000405_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDDK01 2006/2012 2842STDY5753240 2014-07-02T15:07:57Z Prokka current 62 2000405_II-sc-1869945 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDDK01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753240 species_match 98.88 SAMEA2382699 10 Streptococcus pneumoniae 90.42 Streptococcus pneumoniae 1313 PRJEB4909 11 current na Best-placed reference protein set; GeneMarkS-2+ 66204 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1951 Streptococcus pneumoniae Streptococcus pneumoniae ERS409024 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-03T08:07:07.696 99.31 2106831 90.42 1313 2186 2024-02-06T06:47:44.000 2108218 66204 2106831 blood Homo sapiens Streptococcus pneumoniae Disease 183 EBI 100 GCA_053203845.1 GCF_900043005.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900043005.1 type blood 98.88 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FDDK00000000.1 2014-07-02T15:07:57Z GCF_900043005.1 haploid public 2000405_II-sc-1869945 86.81 0.62 67 2018-03-10T19:05:12 GCA_053203845.1 831237 52 12673_7#59 2000405_II-sc-1869945 Netherlands 12673_7#59 SAMEA2382699 1313 GCA_900043005.1 Generic.1.0 86.81 SRA GCA_900043005.1 category_na live 2018-03-09T10:41:42Z 2842STDY5753240 PRJEB4909 Annotation submitted by SC SC SC 62 1869945 2018-03-09T10:41:42Z 2014-07-02T00:00:00.000 2000405_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDDK01 2006/2012 2842STDY5753240 6.10 2014-07-02T15:07:57Z Prokka current 62 2000405_II-sc-1869945 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDDK01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753240 species_match 98.88 SAMEA1029419 11 Streptococcus pneumoniae 89.65 Streptococcus pneumoniae 1313 PRJEB2480 11 current na 65942 type Streptococcus pneumoniae 2015-07-14 40 40 species Homo sapiens 2121 Streptococcus pneumoniae Streptococcus pneumoniae ERS022531 SC 2010-09-08 v1.2.4 2012-02-09T20:49:12.023 99.1 2137168 89.65 1313 2162 2024-02-05T16:20:13.000 2137168 65942 2137152 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001171905.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CMIS00000000.1 2012-02-07T17:03:03Z GCA_001171905.1 haploid public SMRU3021-sc-2011-01-27-1063234 90.76 0.45 62 2015-07-28T08:13:18 GCA_001457635.1 844303 41 7038_7#21 SMRU3021-sc-2011-01-27-1063234 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029419 1313 GCF_001171905.1 Generic.1.0 90.76 SRA GCF_001171905.1 category_na live 2018-03-09T09:52:57Z SMRU3021 PRJEB2480 GCF_001171905.1-RS_2025_08_18 SC SC 62 2018-03-09T09:52:57Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMIS01 2010-09-08 SMRU3021 2012-02-07T17:03:03Z Prokka current 62 SMRU3021-sc-2011-01-27-1063234 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMIS01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU3021 species_match 98.73 SAMEA1029419 11 Streptococcus pneumoniae 89.65 Streptococcus pneumoniae 1313 PRJEB2480 11 current na Best-placed reference protein set; GeneMarkS-2+ 65942 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-18 40 40 species Homo sapiens 2043 Streptococcus pneumoniae Streptococcus pneumoniae ERS022531 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-09-08 v1.2.4 2012-02-09T20:49:12.023 99.1 2137168 89.65 1313 2243 2024-02-05T16:20:13.000 2137168 65942 2137152 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 156 EBI 100 GCA_001457635.1 GCF_001171905.1-RS_2025_08_18 SLX Streptococcus pneumoniae GCF_001171905.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CMIS00000000.1 2012-02-07T17:03:03Z GCF_001171905.1 haploid public SMRU3021-sc-2011-01-27-1063234 90.76 0.45 62 2015-07-28T08:13:18 GCA_001457635.1 844303 44 7038_7#21 SMRU3021-sc-2011-01-27-1063234 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029419 1313 GCA_001171905.1 Generic.1.0 90.76 SRA GCA_001171905.1 category_na live 2018-03-09T09:52:57Z SMRU3021 PRJEB2480 Annotation submitted by SC SC SC 62 2018-03-09T09:52:57Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMIS01 2010-09-08 SMRU3021 6.10 2012-02-07T17:03:03Z Prokka current 62 SMRU3021-sc-2011-01-27-1063234 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMIS01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU3021 species_match 98.73 SAMEA1025604 9 Streptococcus pneumoniae 89.44 Streptococcus pneumoniae 1313 PRJEB2395 9 current na 64873 type Streptococcus pneumoniae 2015-07-28 46 46 species Homo sapiens 2107 Streptococcus pneumoniae Streptococcus pneumoniae ERS020974 SC 2009-04-24 v1.2.4 2012-01-20T19:58:37.180 98.84 2139110 89.44 1313 2147 2024-02-06T09:04:18.000 2139110 64873 2139082 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001342695.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/CGXV00000000.1 2011-11-29T12:03:47Z GCA_001342695.1 haploid public SMRU1464-sc-2011-01-27-1061677 90.63 0.78 76 2015-07-28T08:11:53 GCA_001457635.1 844683 40 6805_3#24 SMRU1464-sc-2011-01-27-1061677 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025604 1313 GCF_001342695.1 Generic.1.0 90.63 SRA GCF_001342695.1 category_na live 2018-03-09T12:11:20Z SMRU1464 PRJEB2395 GCF_001342695.1-RS_2026_02_01 SC SC 76 2018-03-09T12:11:20Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CGXV01 2009-04-24 SMRU1464 2011-11-29T12:03:47Z Prokka current 76 SMRU1464-sc-2011-01-27-1061677 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CGXV01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU1464 species_match 98.76 SAMEA1025604 9 Streptococcus pneumoniae 89.44 Streptococcus pneumoniae 1313 PRJEB2395 9 current na Best-placed reference protein set; GeneMarkS-2+ 64873 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 46 46 species Homo sapiens 2016 Streptococcus pneumoniae Streptococcus pneumoniae ERS020974 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-24 v1.2.4 2012-01-20T19:58:37.180 98.84 2139110 89.44 1313 2267 2024-02-06T09:04:18.000 2139110 64873 2139082 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 209 EBI 100 GCA_001457635.1 GCF_001342695.1-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_001342695.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/CGXV00000000.1 2011-11-29T12:03:47Z GCF_001342695.1 haploid public SMRU1464-sc-2011-01-27-1061677 90.63 0.78 76 2015-07-28T08:11:53 GCA_001457635.1 844683 42 6805_3#24 SMRU1464-sc-2011-01-27-1061677 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025604 1313 GCA_001342695.1 Generic.1.0 90.63 SRA GCA_001342695.1 category_na live 2018-03-09T12:11:20Z SMRU1464 PRJEB2395 Annotation submitted by SC SC SC 76 2018-03-09T12:11:20Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CGXV01 2009-04-24 SMRU1464 6.10 2011-11-29T12:03:47Z Prokka current 76 SMRU1464-sc-2011-01-27-1061677 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CGXV01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU1464 species_match 98.76 SAMEA1025134 10 Streptococcus pneumoniae 88.24 Streptococcus pneumoniae 1313 PRJEB2395 10 current na 63460 type Streptococcus pneumoniae 2015-07-18 46 46 species Homo sapiens 2153 Streptococcus pneumoniae Streptococcus pneumoniae ERS020986 SC 2009-04-28 v1.2.4 2012-01-20T19:58:44.793 97.88 2161373 88.24 1313 2193 2024-02-05T23:08:11.000 2161383 63460 2161354 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001203355.1 type nasopharynx 98.38 OK 39.5 Streptococcus pneumoniae 6.07516 https://www.ncbi.nlm.nih.gov/nuccore/CRIP00000000.1 2011-11-15T09:28:17Z GCA_001203355.1 haploid public SMRU1476-sc-2011-01-27-1061689 86.92 0.99 60 2015-07-28T08:11:41 GCA_053203845.1 854355 40 6753_1#12 SMRU1476-sc-2011-01-27-1061689 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025134 1313 GCF_001203355.1 Generic.1.0 86.92 SRA GCF_001203355.1 category_na live 2018-03-09T10:03:32Z SMRU1476 PRJEB2395 GCF_001203355.1-RS_2026_02_08 SC SC 59 2018-03-09T10:03:32Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRIP01 2009-04-28 SMRU1476 2011-11-15T09:28:17Z Prokka current 59 SMRU1476-sc-2011-01-27-1061689 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRIP01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1476 species_match 98.38 SAMEA1025134 10 Streptococcus pneumoniae 88.24 Streptococcus pneumoniae 1313 PRJEB2395 10 current na Best-placed reference protein set; GeneMarkS-2+ 63460 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-08 46 46 species Homo sapiens 2064 Streptococcus pneumoniae Streptococcus pneumoniae ERS020986 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-28 v1.2.4 2012-01-20T19:58:44.793 97.88 2161373 88.24 1313 2276 2024-02-05T23:08:11.000 2161383 63460 2161354 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 170 EBI 100 GCA_053203845.1 GCF_001203355.1-RS_2026_02_08 SLX Streptococcus pneumoniae GCF_001203355.1 type nasopharynx 98.38 OK 39.5 Streptococcus pneumoniae 6.07516 https://www.ncbi.nlm.nih.gov/nuccore/CRIP00000000.1 2011-11-15T09:28:17Z GCF_001203355.1 haploid public SMRU1476-sc-2011-01-27-1061689 86.92 0.99 60 2015-07-28T08:11:41 GCA_053203845.1 854355 42 6753_1#12 SMRU1476-sc-2011-01-27-1061689 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025134 1313 GCA_001203355.1 Generic.1.0 86.92 SRA GCA_001203355.1 category_na live 2018-03-09T10:03:32Z SMRU1476 PRJEB2395 Annotation submitted by SC SC SC 59 2018-03-09T10:03:32Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRIP01 2009-04-28 SMRU1476 6.10 2011-11-15T09:28:17Z Prokka current 59 SMRU1476-sc-2011-01-27-1061689 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRIP01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1476 species_match 98.38 SAMEA1023935 10 Streptococcus pneumoniae 90.31 Streptococcus pneumoniae 1313 PRJEB2357 10 current na 61616 type Streptococcus pneumoniae 2015-07-11 46 46 species Homo sapiens 2063 Streptococcus pneumoniae Streptococcus pneumoniae ERS019364 SC 2008-03-20 v1.2.4 2012-01-20T19:43:17.050 98.63 2103902 90.31 1313 2103 2024-02-06T09:04:50.000 2103902 61616 2103888 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001099345.1 type nasopharynx 98.79 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CKRR00000000.1 2011-10-25T09:28:12Z GCA_001099345.1 haploid public SMRU206-sc-2011-01-27-1060395 90.01 0.62 64 2015-07-28T08:10:52 GCA_001457635.1 830173 40 6680_8#14 SMRU206-sc-2011-01-27-1060395 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1023935 1313 GCF_001099345.1 Generic.1.0 90.01 SRA GCF_001099345.1 category_na live 2018-03-09T12:25:48Z SMRU206 PRJEB2357 GCF_001099345.1-RS_2026_02_01 SC SC 64 2018-03-09T12:25:48Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKRR01 2008-03-20 SMRU206 2011-10-25T09:28:12Z Prokka current 64 SMRU206-sc-2011-01-27-1060395 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKRR01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU206 species_match 98.79 SAMEA1023935 10 Streptococcus pneumoniae 90.31 Streptococcus pneumoniae 1313 PRJEB2357 10 current na Best-placed reference protein set; GeneMarkS-2+ 61616 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 46 46 species Homo sapiens 1955 Streptococcus pneumoniae Streptococcus pneumoniae ERS019364 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-03-20 v1.2.4 2012-01-20T19:43:17.050 98.63 2103902 90.31 1313 2191 2024-02-06T09:04:50.000 2103902 61616 2103888 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 194 EBI 100 GCA_001457635.1 GCF_001099345.1-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_001099345.1 type nasopharynx 98.79 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CKRR00000000.1 2011-10-25T09:28:12Z GCF_001099345.1 haploid public SMRU206-sc-2011-01-27-1060395 90.01 0.62 64 2015-07-28T08:10:52 GCA_001457635.1 830173 42 6680_8#14 SMRU206-sc-2011-01-27-1060395 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1023935 1313 GCA_001099345.1 Generic.1.0 90.01 SRA GCA_001099345.1 category_na live 2018-03-09T12:25:48Z SMRU206 PRJEB2357 Annotation submitted by SC SC SC 64 2018-03-09T12:25:48Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKRR01 2008-03-20 SMRU206 6.10 2011-10-25T09:28:12Z Prokka current 64 SMRU206-sc-2011-01-27-1060395 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKRR01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU206 species_match 98.79 SAMEA1024190 7 Streptococcus pneumoniae 90.28 Streptococcus pneumoniae 1313 PRJEB2357 7 current na 101410 type Streptococcus pneumoniae 2015-07-11 40 40 species Homo sapiens 2157 Streptococcus pneumoniae Streptococcus pneumoniae ERS019338 SC 2008-03-12 v1.2.4 2012-01-20T19:43:00.053 99.1 2156329 90.28 1313 2197 2024-02-05T16:18:01.000 2156392 101410 2156305 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001110265.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CKMR00000000.1 2011-10-18T09:14:37Z GCA_001110265.1 haploid public SMRU180-sc-2011-01-27-1060369 88.71 1.2 50 2016-01-29T08:05:27 GCA_053203845.1 850919 40 6649_8#12 SMRU180-sc-2011-01-27-1060369 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024190 1313 GCF_001110265.1 Generic.1.0 88.71 SRA GCF_001110265.1 category_na live 2018-03-09T09:52:55Z SMRU180 PRJEB2357 GCF_001110265.1-RS_2026_01_21 SC SC 48 2018-03-09T09:52:55Z 2011-10-18T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKMR01 2008-03-12 40 2011-10-18T09:14:37Z Prokka current 48 SMRU180-sc-2011-01-27-1060369 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKMR01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU180 species_match 98.74 SAMEA1024190 7 Streptococcus pneumoniae 90.28 Streptococcus pneumoniae 1313 PRJEB2357 7 current na Best-placed reference protein set; GeneMarkS-2+ 101410 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-21 40 40 species Homo sapiens 2060 Streptococcus pneumoniae Streptococcus pneumoniae ERS019338 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-03-12 v1.2.4 2012-01-20T19:43:00.053 99.1 2156329 90.28 1313 2279 2024-02-05T16:18:01.000 2156392 101410 2156305 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 176 EBI 100 GCA_053203845.1 GCF_001110265.1-RS_2026_01_21 SLX Streptococcus pneumoniae GCF_001110265.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CKMR00000000.1 2011-10-18T09:14:37Z GCF_001110265.1 haploid public SMRU180-sc-2011-01-27-1060369 88.71 1.2 50 2016-01-29T08:05:27 GCA_053203845.1 850919 43 6649_8#12 SMRU180-sc-2011-01-27-1060369 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024190 1313 GCA_001110265.1 Generic.1.0 88.71 SRA GCA_001110265.1 category_na live 2018-03-09T09:52:55Z SMRU180 PRJEB2357 Annotation submitted by SC SC SC 48 2018-03-09T09:52:55Z 2011-10-18T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKMR01 2008-03-12 SMRU180 6.10 2011-10-18T09:14:37Z Prokka current 48 SMRU180-sc-2011-01-27-1060369 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKMR01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU180 species_match 98.74 SAMEA1033586 8 Streptococcus pneumoniae 93.48 Streptococcus pneumoniae 1313 PRJEB2656 8 current na 96098 type Streptococcus pneumoniae 2016-02-12 12B 12B species Homo sapiens 1987 Streptococcus pneumoniae Streptococcus pneumoniae ERS050457 SC v1.2.4 2012-01-20T22:00:07.796 98.75 2044271 93.48 1313 2036 2024-02-05T17:56:27.000 2044271 96098 2044270 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900050955.1 type CSF 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 29.4027 https://www.ncbi.nlm.nih.gov/nuccore/FIWJ00000000.1 2012-01-16T17:01:51Z GCA_900050955.1 haploid public C14971-sc-2011-08-23T15:08:41Z-1261876 87.08 0.31 54 2015-08-07T15:39:30 GCA_053203845.1 810069 49 7004_3#56 C14971-sc-2011-08-23T15:08:41Z-1261876 Malawi 7004_3#56 SAMEA1033586 1313 GCF_900050955.1 Generic.1.0 87.08 SRA GCF_900050955.1 category_na live 2018-03-09T09:54:18Z C14971 PRJEB2656 GCF_900050955.1-RS_2026_01_24 SC SC 54 1261876 2018-03-09T09:54:18Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIWJ01 C14971 2012-01-16T17:01:51Z Prokka current 54 C14971-sc-2011-08-23T15:08:41Z-1261876 Generic Streptococcus_pneumoniae_samples_from_Malawi FIWJ01 Contig SOURCE_DATABASE_GENBANK Malawi 2016-02-12 C14971 species_match 98.82 SAMEA1033586 8 Streptococcus pneumoniae 93.48 Streptococcus pneumoniae 1313 PRJEB2656 8 current na Best-placed reference protein set; GeneMarkS-2+ 96098 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 12B 12B species Homo sapiens 1908 Streptococcus pneumoniae Streptococcus pneumoniae ERS050457 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq v1.2.4 2012-01-20T22:00:07.796 98.75 2044271 93.48 1313 2131 2024-02-05T17:56:27.000 2044271 96098 2044270 CSF Homo sapiens Streptococcus pneumoniae Disease 171 EBI 100 GCA_053203845.1 GCF_900050955.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_900050955.1 type CSF 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 29.4027 https://www.ncbi.nlm.nih.gov/nuccore/FIWJ00000000.1 2012-01-16T17:01:51Z GCF_900050955.1 haploid public C14971-sc-2011-08-23T15:08:41Z-1261876 87.08 0.31 54 2015-08-07T15:39:30 GCA_053203845.1 810069 52 7004_3#56 C14971-sc-2011-08-23T15:08:41Z-1261876 Malawi 7004_3#56 SAMEA1033586 1313 GCA_900050955.1 Generic.1.0 87.08 SRA GCA_900050955.1 category_na live 2018-03-09T09:54:18Z C14971 PRJEB2656 Annotation submitted by SC SC SC 54 1261876 2018-03-09T09:54:18Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIWJ01 C14971 6.10 2012-01-16T17:01:51Z Prokka current 54 C14971-sc-2011-08-23T15:08:41Z-1261876 Generic Streptococcus_pneumoniae_samples_from_Malawi FIWJ01 Contig SOURCE_DATABASE_REFSEQ Malawi 2016-02-12 C14971 species_match 98.82 SAMEA974682 8 Streptococcus pneumoniae 94.48 Streptococcus pneumoniae 1313 PRJEB2357 8 current na 84944 type Streptococcus pneumoniae 2015-07-11 48 48 species Homo sapiens 1991 Streptococcus pneumoniae Streptococcus pneumoniae ERS019175 SC 2007-12-14 v1.2.4 2011-07-31T19:54:50.390 99.31 2054106 94.48 1313 2031 2024-02-05T16:27:32.000 2054134 84944 2054093 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001169685.1 type nasopharynx 98.87 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CJZO00000000.1 2011-07-27T10:09:45Z GCA_001169685.1 haploid public SMRU17-sc-2011-01-27-1026442 88.44 0.65 45 2016-01-29T08:05:14 GCA_053203845.1 812205 40 6259_5#17 SMRU17-sc-2011-01-27-1026442 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974682 1313 GCF_001169685.1 Generic.1.0 88.44 SRA GCF_001169685.1 category_na live 2018-03-09T09:53:02Z SMRU17 PRJEB2357 GCF_001169685.1-RS_2026_01_19 SC SC 44 2018-03-09T09:53:02Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CJZO01 2007-12-14 48 2011-07-27T10:09:45Z Prokka current 44 SMRU17-sc-2011-01-27-1026442 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CJZO01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU17 species_match 98.87 SAMEA974682 8 Streptococcus pneumoniae 94.48 Streptococcus pneumoniae 1313 PRJEB2357 8 current na Best-placed reference protein set; GeneMarkS-2+ 84944 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 48 48 species Homo sapiens 1922 Streptococcus pneumoniae Streptococcus pneumoniae ERS019175 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007-12-14 v1.2.4 2011-07-31T19:54:50.390 99.31 2054106 94.48 1313 2128 2024-02-05T16:27:32.000 2054134 84944 2054093 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 164 EBI 100 GCA_053203845.1 GCF_001169685.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001169685.1 type nasopharynx 98.87 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CJZO00000000.1 2011-07-27T10:09:45Z GCF_001169685.1 haploid public SMRU17-sc-2011-01-27-1026442 88.44 0.65 45 2016-01-29T08:05:14 GCA_053203845.1 812205 42 6259_5#17 SMRU17-sc-2011-01-27-1026442 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974682 1313 GCA_001169685.1 Generic.1.0 88.44 SRA GCA_001169685.1 category_na live 2018-03-09T09:53:02Z SMRU17 PRJEB2357 Annotation submitted by SC SC SC 44 2018-03-09T09:53:02Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CJZO01 2007-12-14 SMRU17 6.10 2011-07-27T10:09:45Z Prokka current 44 SMRU17-sc-2011-01-27-1026442 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CJZO01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU17 species_match 98.87 SAMEA1023693 8 Streptococcus pneumoniae 94.25 Streptococcus pneumoniae 1313 PRJEB2357 9 current na 83534 type Streptococcus pneumoniae 2015-07-11 48 48 species Homo sapiens 1987 Streptococcus pneumoniae Streptococcus pneumoniae ERS019680 SC 2008-04-16 v1.2.4 2012-01-20T19:46:51.990 99.31 2054242 94.25 1313 2029 2024-02-06T09:03:53.000 2054258 83534 2054230 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001156665.1 type nasopharynx 98.88 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKKP00000000.1 2011-10-11T09:20:06Z GCA_001156665.1 haploid public SMRU522-sc-2011-01-27-1060711 88.24 0.58 50 2016-01-29T08:05:26 GCA_053203845.1 812181 42 6631_7#18 SMRU522-sc-2011-01-27-1060711 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023693 1313 GCF_001156665.1 Generic.1.0 88.24 SRA GCF_001156665.1 category_na live 2018-03-09T12:04:14Z SMRU522 PRJEB2357 GCF_001156665.1-RS_2026_01_19 SC SC 49 2018-03-09T12:04:14Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKKP01 2008-04-16 48 2011-10-11T09:20:06Z Prokka current 49 SMRU522-sc-2011-01-27-1060711 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKKP01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU522 species_match 98.88 SAMEA1023693 8 Streptococcus pneumoniae 94.25 Streptococcus pneumoniae 1313 PRJEB2357 9 current na Best-placed reference protein set; GeneMarkS-2+ 83534 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 48 48 species Homo sapiens 1930 Streptococcus pneumoniae Streptococcus pneumoniae ERS019680 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-04-16 v1.2.4 2012-01-20T19:46:51.990 99.31 2054242 94.25 1313 2141 2024-02-06T09:03:53.000 2054258 83534 2054230 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 166 EBI 100 GCA_053203845.1 GCF_001156665.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001156665.1 type nasopharynx 98.88 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKKP00000000.1 2011-10-11T09:20:06Z GCF_001156665.1 haploid public SMRU522-sc-2011-01-27-1060711 88.24 0.58 50 2016-01-29T08:05:26 GCA_053203845.1 812181 45 6631_7#18 SMRU522-sc-2011-01-27-1060711 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023693 1313 GCA_001156665.1 Generic.1.0 88.24 SRA GCA_001156665.1 category_na live 2018-03-09T12:04:14Z SMRU522 PRJEB2357 Annotation submitted by SC SC SC 49 2018-03-09T12:04:14Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKKP01 2008-04-16 SMRU522 6.10 2011-10-11T09:20:06Z Prokka current 49 SMRU522-sc-2011-01-27-1060711 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKKP01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU522 species_match 98.88 SAMEA974650 9 Streptococcus pneumoniae 94.66 Streptococcus pneumoniae 1313 PRJEB2357 9 current na 79614 type Streptococcus pneumoniae 2015-07-11 48 48 species Homo sapiens 1979 Streptococcus pneumoniae Streptococcus pneumoniae ERS019187 SC 2007-12-28 v1.2.4 2011-07-31T19:54:59.240 99.23 2047525 94.66 1313 2018 2024-02-06T09:04:00.000 2047653 76363 2047513 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001152905.1 type nasopharynx 98.87 OK 39.5 Streptococcus pneumoniae 71.8008 https://www.ncbi.nlm.nih.gov/nuccore/CKAL00000000.1 2011-07-27T10:09:44Z GCA_001152905.1 haploid public SMRU29-sc-2011-01-27-1026454 88.33 0.52 45 2016-01-29T08:05:14 GCA_053203845.1 809592 39 6259_6#5 SMRU29-sc-2011-01-27-1026454 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974650 1313 GCF_001152905.1 Generic.1.0 88.33 SRA GCF_001152905.1 category_na live 2018-03-09T12:05:43Z SMRU29 PRJEB2357 GCF_001152905.1-RS_2026_01_13 SC SC 42 2018-03-09T12:05:43Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKAL01 2007-12-28 48 2011-07-27T10:09:44Z Prokka current 42 SMRU29-sc-2011-01-27-1026454 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKAL01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU29 species_match 98.87 SAMEA974650 9 Streptococcus pneumoniae 94.66 Streptococcus pneumoniae 1313 PRJEB2357 9 current na Best-placed reference protein set; GeneMarkS-2+ 79614 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-13 48 48 species Homo sapiens 1910 Streptococcus pneumoniae Streptococcus pneumoniae ERS019187 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007-12-28 v1.2.4 2011-07-31T19:54:59.240 99.23 2047525 94.66 1313 2108 2024-02-06T09:04:00.000 2047653 76363 2047513 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 157 EBI 100 GCA_053203845.1 GCF_001152905.1-RS_2026_01_13 SLX Streptococcus pneumoniae GCF_001152905.1 type nasopharynx 98.87 OK 39.5 Streptococcus pneumoniae 71.8008 https://www.ncbi.nlm.nih.gov/nuccore/CKAL00000000.1 2011-07-27T10:09:44Z GCF_001152905.1 haploid public SMRU29-sc-2011-01-27-1026454 88.33 0.52 45 2016-01-29T08:05:14 GCA_053203845.1 809592 41 6259_6#5 SMRU29-sc-2011-01-27-1026454 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974650 1313 GCA_001152905.1 Generic.1.0 88.33 SRA GCA_001152905.1 category_na live 2018-03-09T12:05:43Z SMRU29 PRJEB2357 Annotation submitted by SC SC SC 42 2018-03-09T12:05:43Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKAL01 2007-12-28 SMRU29 6.10 2011-07-27T10:09:44Z Prokka current 42 SMRU29-sc-2011-01-27-1026454 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKAL01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU29 species_match 98.87 SAMEA1026261 11 Streptococcus pneumoniae 94.73 Streptococcus pneumoniae 1313 PRJEB2397 11 current na 61944 type Streptococcus pneumoniae 2015-07-13 48 48 species Homo sapiens 1965 Streptococcus pneumoniae Streptococcus pneumoniae ERS021797 SC 2010-01-04 v1.2.4 2012-01-20T20:08:10.813 99.31 2041936 94.73 1313 2006 2024-02-06T09:02:34.000 2041936 61944 2041933 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001155885.1 type nasopharynx 98.88 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLWA00000000.1 2012-01-10T09:59:58Z GCA_001155885.1 haploid public SMRU2288-sc-2011-01-27-1062501 88.15 0.58 57 2015-07-28T08:12:44 GCA_053203845.1 807657 41 6983_4#80 SMRU2288-sc-2011-01-27-1062501 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026261 1313 GCF_001155885.1 Generic.1.0 88.15 SRA GCF_001155885.1 category_na live 2018-03-09T11:45:55Z SMRU2288 PRJEB2397 GCF_001155885.1-RS_2026_01_05 SC SC 57 2018-03-09T11:45:55Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLWA01 2010-01-04 SMRU2288 2012-01-10T09:59:58Z Prokka current 57 SMRU2288-sc-2011-01-27-1062501 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLWA01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2288 species_match 98.88 SAMEA1026261 11 Streptococcus pneumoniae 94.73 Streptococcus pneumoniae 1313 PRJEB2397 11 current na Best-placed reference protein set; GeneMarkS-2+ 61944 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-05 48 48 species Homo sapiens 1923 Streptococcus pneumoniae Streptococcus pneumoniae ERS021797 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-01-04 v1.2.4 2012-01-20T20:08:10.813 99.31 2041936 94.73 1313 2110 2024-02-06T09:02:34.000 2041936 61944 2041933 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 143 EBI 100 GCA_053203845.1 GCF_001155885.1-RS_2026_01_05 SLX Streptococcus pneumoniae GCF_001155885.1 type nasopharynx 98.88 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLWA00000000.1 2012-01-10T09:59:58Z GCF_001155885.1 haploid public SMRU2288-sc-2011-01-27-1062501 88.15 0.58 57 2015-07-28T08:12:44 GCA_053203845.1 807657 44 6983_4#80 SMRU2288-sc-2011-01-27-1062501 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026261 1313 GCA_001155885.1 Generic.1.0 88.15 SRA GCA_001155885.1 category_na live 2018-03-09T11:45:55Z SMRU2288 PRJEB2397 Annotation submitted by SC SC SC 57 2018-03-09T11:45:55Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLWA01 2010-01-04 SMRU2288 6.10 2012-01-10T09:59:58Z Prokka current 57 SMRU2288-sc-2011-01-27-1062501 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLWA01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2288 species_match 98.88 SAMEA1024061 11 Streptococcus pneumoniae 89.19 Streptococcus pneumoniae 1313 PRJEB2357 12 current na 66751 type Streptococcus pneumoniae 2015-07-23 46 46 species Homo sapiens 2124 Streptococcus pneumoniae Streptococcus pneumoniae ERS019401 SC 2008-04-01 v1.2.4 2012-01-20T19:43:44.533 98.63 2145383 89.19 1313 2163 2024-02-06T09:04:11.000 2145403 61448 2145344 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001335695.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CFGR00000000.1 2011-11-07T13:55:51Z GCA_001335695.1 haploid public SMRU243-sc-2011-01-27-1060432 90.64 1.25 65 2015-07-28T08:11:16 GCA_001457635.1 847001 39 6673_8#3 SMRU243-sc-2011-01-27-1060432 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024061 1313 GCF_001335695.1 Generic.1.0 90.64 SRA GCF_001335695.1 category_na live 2018-03-09T12:09:23Z SMRU243 PRJEB2357 GCF_001335695.1-RS_2026_02_01 SC SC 64 2018-03-09T12:09:23Z 2011-11-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFGR01 2008-04-01 SMRU243 2011-11-07T13:55:51Z Prokka current 64 SMRU243-sc-2011-01-27-1060432 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFGR01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-01 SMRU243 species_match 98.76 SAMEA1024061 11 Streptococcus pneumoniae 89.19 Streptococcus pneumoniae 1313 PRJEB2357 12 current na Best-placed reference protein set; GeneMarkS-2+ 66751 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 46 46 species Homo sapiens 2003 Streptococcus pneumoniae Streptococcus pneumoniae ERS019401 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-04-01 v1.2.4 2012-01-20T19:43:44.533 98.63 2145383 89.19 1313 2260 2024-02-06T09:04:11.000 2145403 61448 2145344 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 216 EBI 100 GCA_001457635.1 GCF_001335695.1-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_001335695.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CFGR00000000.1 2011-11-07T13:55:51Z GCF_001335695.1 haploid public SMRU243-sc-2011-01-27-1060432 90.64 1.25 65 2015-07-28T08:11:16 GCA_001457635.1 847001 41 6673_8#3 SMRU243-sc-2011-01-27-1060432 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024061 1313 GCA_001335695.1 Generic.1.0 90.64 SRA GCA_001335695.1 category_na live 2018-03-09T12:09:23Z SMRU243 PRJEB2357 Annotation submitted by SC SC SC 64 2018-03-09T12:09:23Z 2011-11-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFGR01 2008-04-01 SMRU243 6.10 2011-11-07T13:55:51Z Prokka current 64 SMRU243-sc-2011-01-27-1060432 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFGR01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-01 SMRU243 species_match 98.76 SAMEA1025301 11 Streptococcus pneumoniae 85.65 Streptococcus pneumoniae 1313 PRJEB2395 11 current na 59176 type Streptococcus pneumoniae 2015-07-24 46 46 species Homo sapiens 2255 Streptococcus pneumoniae Streptococcus pneumoniae ERS020817 SC 2009-03-02 v1.2.4 2012-01-20T19:56:52.036 98.84 2263241 85.65 1313 2299 2024-02-06T09:03:56.000 2263311 59176 2263204 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001341275.1 type nasopharynx 98.83 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/CGXA00000000.1 2011-11-15T17:01:01Z GCA_001341275.1 haploid public SMRU1307-sc-2011-01-27-1061520 88.34 5.83 81 2015-07-28T08:11:36 GCA_053203845.1 896611 44 6736_8#11 SMRU1307-sc-2011-01-27-1061520 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025301 1313 GCF_001341275.1 Generic.1.0 88.34 SRA GCF_001341275.1 category_na live 2018-03-09T12:04:52Z SMRU1307 PRJEB2395 GCF_001341275.1-RS_2026_02_07 SC SC 79 2018-03-09T12:04:52Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CGXA01 2009-03-02 SMRU1307 2011-11-15T17:01:01Z Prokka current 79 SMRU1307-sc-2011-01-27-1061520 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CGXA01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU1307 species_match 98.83 SAMEA1025301 11 Streptococcus pneumoniae 85.65 Streptococcus pneumoniae 1313 PRJEB2395 11 current na Best-placed reference protein set; GeneMarkS-2+ 59176 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-07 46 46 species Homo sapiens 2159 Streptococcus pneumoniae Streptococcus pneumoniae ERS020817 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-02 v1.2.4 2012-01-20T19:56:52.036 98.84 2263241 85.65 1313 2427 2024-02-06T09:03:56.000 2263311 59176 2263204 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 221 EBI 100 GCA_053203845.1 GCF_001341275.1-RS_2026_02_07 SLX Streptococcus pneumoniae GCF_001341275.1 type nasopharynx 98.83 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/CGXA00000000.1 2011-11-15T17:01:01Z GCF_001341275.1 haploid public SMRU1307-sc-2011-01-27-1061520 88.34 5.83 81 2015-07-28T08:11:36 GCA_053203845.1 896611 47 6736_8#11 SMRU1307-sc-2011-01-27-1061520 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025301 1313 GCA_001341275.1 Generic.1.0 88.34 SRA GCA_001341275.1 category_na live 2018-03-09T12:04:52Z SMRU1307 PRJEB2395 Annotation submitted by SC SC SC 79 2018-03-09T12:04:52Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CGXA01 2009-03-02 SMRU1307 6.10 2011-11-15T17:01:01Z Prokka current 79 SMRU1307-sc-2011-01-27-1061520 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CGXA01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU1307 species_match 98.83 SAMEA104035869 2 Streptococcus pneumoniae 93.01 Streptococcus pneumoniae PRJEB3084 2 na 367775 type Streptococcus pneumoniae 2019-05-11 10A 10A Homo sapiens 2014 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699762 SC 2006 2017-08-10T16:10:05.650 2055963 93.01 1313 2065 Streptococcus pneumoniae 2024-02-06T15:52:24.000 2055963 2245STDY6835947 367775 2055963 blood/CSF Homo sapiens IPD from large multi-isolate project ST13953 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901285595.1 type Streptococcus pneumoniae blood/CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAVIQ000000000.1 2017-08-08T13:54:44Z GCA_901285595.1 haploid public c4170e20-1f66-11e7-b93e-3c4a9275d6c8 87.15 20 2017-08-10T17:10:05.517 GCA_053203845.1 814705 51 22841_3#92 c4170e20-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_3#92 SAMEA104035869 1313 Generic.1.0 87.15 SRA category_na live 2019-04-18T15:32:32Z GPSC286 PRJEB3084 SC SC 20 3052622 2019-04-18T15:32:32Z 2017-08-08T00:00:00.000 9359 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAVIQ01 2006 GPSC286 substr. ST13953 2017-08-08T13:54:44Z Prokka current 20 c4170e20-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAVIQ01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-11 GPSC286 species_match 98.86 SAMEA4394630 4 Streptococcus pneumoniae 90.57 Streptococcus pneumoniae PRJEB3084 4 na 201572 type Streptococcus pneumoniae 2019-05-16 12A 12A Homo sapiens 2122 Streptococcus pneumoniae Streptococcus pneumoniae ERS1306079 SC 2009 2016-12-21T09:12:19.003 2132628 90.57 1313 2173 Streptococcus pneumoniae 2024-02-06T15:51:06.000 2132628 201572 2132627 CSF Homo sapiens Meningitis from large multi-isolate project ST989 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901296905.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWZT000000000.1 2016-12-20T09:21:18Z GCA_901296905.1 haploid public fa27d3d0-589e-11e6-9a3d-3c4a9275d6c8 88.02 36 2016-12-21T10:09:53.867 GCA_053203845.1 840809 51 20957_7#130 fa27d3d0-589e-11e6-9a3d-3c4a9275d6c8 Bangladesh 20957_7#130 SAMEA4394630 1313 Generic.1.0 88.02 SRA category_na live 2019-04-18T15:32:10Z GPSC26 PRJEB3084 SC SC 36 2738308 2019-04-18T15:32:10Z 2016-12-20T00:00:00.000 10732 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWZT01 2009 GPSC26 substr. ST989 2016-12-20T09:21:18Z Prokka current 36 fa27d3d0-589e-11e6-9a3d-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWZT01 Contig SOURCE_DATABASE_GENBANK Bangladesh 2019-05-16 GPSC26 species_match 98.83 SAMEA3381495 4 Streptococcus pneumoniae 93.62 Streptococcus pneumoniae PRJEB3084 4 na 197644 type Streptococcus pneumoniae 2019-05-13 48 48 Homo sapiens 2060 Streptococcus pneumoniae Streptococcus pneumoniae ERS719754 SC 2009 2015-12-16T09:08:05.183 2082712 93.62 1313 2112 Streptococcus pneumoniae 2024-02-06T15:54:17.000 2082736 197644 2082709 NP swab Homo sapiens Carriage from large multi-isolate project ST10591 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901315995.1 type NP swab 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAZUT000000000.1 2015-12-15T09:25:20Z GCA_901315995.1 haploid public GPS_GM_2046-sc-2279373 88.86 27 2018-03-10T20:14:00 GCA_053203845.1 824021 52 17794_8#13 GPS_GM_2046-sc-2279373 Gambia 17794_8#13 SAMEA3381495 1313 Generic.1.0 88.86 SRA category_na live 2019-04-18T15:39:12Z GPSC219 PRJEB3084 SC SC 26 2279373 2019-04-18T15:39:12Z 2015-12-15T00:00:00.000 3236 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAZUT01 2009 GPSC219 substr. ST10591 2015-12-15T09:25:20Z Prokka current 26 GPS_GM_2046-sc-2279373 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAZUT01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-13 GPSC219 species_match 98.82 SAMEA3381409 4 Streptococcus pneumoniae 93.64 Streptococcus pneumoniae PRJEB3084 4 na 255231 type Streptococcus pneumoniae 2019-05-13 48 48 Homo sapiens 2052 Streptococcus pneumoniae Streptococcus pneumoniae ERS719668 SC 2009 2015-12-16T09:07:57.450 2081683 93.64 1313 2105 Streptococcus pneumoniae 2024-02-06T15:54:14.000 2081773 197309 2081674 NP swab Homo sapiens Carriage from large multi-isolate project ST10591 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901258655.1 type NP swab 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAARJN000000000.1 2015-12-15T09:25:20Z GCA_901258655.1 haploid public GPS_GM_1921-sc-2279286 88.84 29 2018-03-10T20:13:56 GCA_053203845.1 823641 53 17794_7#1 GPS_GM_1921-sc-2279286 Gambia 17794_7#1 SAMEA3381409 1313 Generic.1.0 88.84 SRA category_na live 2019-04-18T15:39:11Z GPSC219 PRJEB3084 SC SC 27 2279286 2019-04-18T15:39:11Z 2015-12-15T00:00:00.000 3331 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAARJN01 2009 GPSC219 substr. ST10591 2015-12-15T09:25:20Z Prokka current 27 GPS_GM_1921-sc-2279286 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAARJN01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-13 GPSC219 species_match 98.82 SAMEA2238369 5 Streptococcus pneumoniae 95.02 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 115431 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2019 Streptococcus pneumoniae Streptococcus pneumoniae ERS367181 SC 2006/2012 v1.2.4 2014-05-07T08:34:22.150 98.35 2051852 95.02 1313 2066 2024-02-06T05:19:23.000 2055334 109862 2051851 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900046945.1 type CSF 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 14.6726 https://www.ncbi.nlm.nih.gov/nuccore/FDXO00000000.1 2014-03-18T09:35:29Z GCA_900046945.1 haploid public 2070340-sc-2013-11-05T11:55:18Z-1749727 88.85 0.31 45 2018-03-10T18:56:24 GCA_053203845.1 812810 47 11860_4#95 2070340-sc-2013-11-05T11:55:18Z-1749727 Netherlands 11860_4#95 SAMEA2238369 1313 GCF_900046945.1 Generic.1.0 88.85 SRA GCF_900046945.1 category_na live 2018-03-09T10:29:24Z 2842STDY5643738 PRJEB4909 GCF_900046945.1-RS_2025_09_28 SC SC 31 1749727 2018-03-09T10:29:24Z 2014-03-18T00:00:00.000 2070340 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDXO01 2006/2012 2842STDY5643738 2014-03-18T09:35:29Z Prokka current 31 2070340-sc-2013-11-05T11:55:18Z-1749727 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDXO01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643738 species_match 98.89 SAMEA2238369 5 Streptococcus pneumoniae 95.02 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 115431 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1940 Streptococcus pneumoniae Streptococcus pneumoniae ERS367181 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:22.150 98.35 2051852 95.02 1313 2150 2024-02-06T05:19:23.000 2055334 109862 2051851 CSF Homo sapiens Streptococcus pneumoniae Disease 157 EBI 100 GCA_053203845.1 GCF_900046945.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900046945.1 type CSF 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 14.6726 https://www.ncbi.nlm.nih.gov/nuccore/FDXO00000000.1 2014-03-18T09:35:29Z GCF_900046945.1 haploid public 2070340-sc-2013-11-05T11:55:18Z-1749727 88.85 0.31 45 2018-03-10T18:56:24 GCA_053203845.1 812810 53 11860_4#95 2070340-sc-2013-11-05T11:55:18Z-1749727 Netherlands 11860_4#95 SAMEA2238369 1313 GCA_900046945.1 Generic.1.0 88.85 SRA GCA_900046945.1 category_na live 2018-03-09T10:29:24Z 2842STDY5643738 PRJEB4909 Annotation submitted by SC SC SC 31 1749727 2018-03-09T10:29:24Z 2014-03-18T00:00:00.000 2070340 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDXO01 2006/2012 2842STDY5643738 6.10 2014-03-18T09:35:29Z Prokka current 31 2070340-sc-2013-11-05T11:55:18Z-1749727 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDXO01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643738 species_match 98.89 SAMEA2238779 5 Streptococcus pneumoniae 94.97 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 128003 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2022 Streptococcus pneumoniae Streptococcus pneumoniae ERS367591 SC 2006/2012 v1.2.4 2014-05-07T08:34:57.006 98.35 2054188 94.97 1313 2067 2024-02-06T05:04:30.000 2056065 108040 2054180 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900026495.1 type CSF 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 14.6726 https://www.ncbi.nlm.nih.gov/nuccore/FEFX00000000.1 2014-03-18T09:35:30Z GCA_900026495.1 haploid public 2102096-sc-2013-11-05T12:02:18Z-1750142 88.91 0.31 37 2015-08-10T19:24:25 GCA_053203845.1 813468 45 11893_1#22 2102096-sc-2013-11-05T12:02:18Z-1750142 Netherlands 11893_1#22 SAMEA2238779 1313 GCF_900026495.1 Generic.1.0 88.91 SRA GCF_900026495.1 category_na live 2018-03-09T10:27:42Z 2842STDY5644153 PRJEB4909 GCF_900026495.1-RS_2025_09_21 SC SC 29 1750142 2018-03-09T10:27:42Z 2014-03-18T00:00:00.000 2102096 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEFX01 2006/2012 2842STDY5644153 2014-03-18T09:35:30Z Prokka current 29 2102096-sc-2013-11-05T12:02:18Z-1750142 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEFX01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644153 species_match 98.89 SAMEA2238779 5 Streptococcus pneumoniae 94.97 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 128003 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1931 Streptococcus pneumoniae Streptococcus pneumoniae ERS367591 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:57.006 98.35 2054188 94.97 1313 2146 2024-02-06T05:04:30.000 2056065 108040 2054180 CSF Homo sapiens Streptococcus pneumoniae Disease 163 EBI 100 GCA_053203845.1 GCF_900026495.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900026495.1 type CSF 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 14.6726 https://www.ncbi.nlm.nih.gov/nuccore/FEFX00000000.1 2014-03-18T09:35:30Z GCF_900026495.1 haploid public 2102096-sc-2013-11-05T12:02:18Z-1750142 88.91 0.31 37 2015-08-10T19:24:25 GCA_053203845.1 813468 52 11893_1#22 2102096-sc-2013-11-05T12:02:18Z-1750142 Netherlands 11893_1#22 SAMEA2238779 1313 GCA_900026495.1 Generic.1.0 88.91 SRA GCA_900026495.1 category_na live 2018-03-09T10:27:42Z 2842STDY5644153 PRJEB4909 Annotation submitted by SC SC SC 29 1750142 2018-03-09T10:27:42Z 2014-03-18T00:00:00.000 2102096 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEFX01 2006/2012 2842STDY5644153 6.10 2014-03-18T09:35:30Z Prokka current 29 2102096-sc-2013-11-05T12:02:18Z-1750142 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEFX01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644153 species_match 98.89 SAMEA2239062 6 Streptococcus pneumoniae 95.05 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 115432 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2026 Streptococcus pneumoniae Streptococcus pneumoniae ERS367874 SC 2006/2012 v1.2.4 2014-05-07T08:35:18.293 98.3 2051345 95.05 1313 2073 2024-02-06T05:15:30.000 2053383 107897 2051342 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900029985.1 type CSF 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 13.7891 https://www.ncbi.nlm.nih.gov/nuccore/FCQU00000000.1 2014-03-18T09:35:30Z GCA_900029985.1 haploid public 991098-sc-2013-11-05T12:07:17Z-1750431 88.86 0.31 43 2015-08-10T19:24:40 GCA_053203845.1 812519 47 11860_7#21 991098-sc-2013-11-05T12:07:17Z-1750431 Netherlands 11860_7#21 SAMEA2239062 1313 GCF_900029985.1 Generic.1.0 88.86 SRA GCF_900029985.1 category_na live 2018-03-09T10:28:57Z 2842STDY5644442 PRJEB4909 GCF_900029985.1-RS_2025_09_28 SC SC 35 1750431 2018-03-09T10:28:57Z 2014-03-18T00:00:00.000 991098 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCQU01 2006/2012 2842STDY5644442 2014-03-18T09:35:30Z Prokka current 35 991098-sc-2013-11-05T12:07:17Z-1750431 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCQU01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644442 species_match 98.89 SAMEA2239062 6 Streptococcus pneumoniae 95.05 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 115432 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1925 Streptococcus pneumoniae Streptococcus pneumoniae ERS367874 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:18.293 98.3 2051345 95.05 1313 2146 2024-02-06T05:15:30.000 2053383 107897 2051342 CSF Homo sapiens Streptococcus pneumoniae Disease 167 EBI 100 GCA_053203845.1 GCF_900029985.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900029985.1 type CSF 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 13.7891 https://www.ncbi.nlm.nih.gov/nuccore/FCQU00000000.1 2014-03-18T09:35:30Z GCF_900029985.1 haploid public 991098-sc-2013-11-05T12:07:17Z-1750431 88.86 0.31 43 2015-08-10T19:24:40 GCA_053203845.1 812519 54 11860_7#21 991098-sc-2013-11-05T12:07:17Z-1750431 Netherlands 11860_7#21 SAMEA2239062 1313 GCA_900029985.1 Generic.1.0 88.86 SRA GCA_900029985.1 category_na live 2018-03-09T10:28:57Z 2842STDY5644442 PRJEB4909 Annotation submitted by SC SC SC 35 1750431 2018-03-09T10:28:57Z 2014-03-18T00:00:00.000 991098 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCQU01 2006/2012 2842STDY5644442 6.10 2014-03-18T09:35:30Z Prokka current 35 991098-sc-2013-11-05T12:07:17Z-1750431 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCQU01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644442 species_match 98.89 SAMEA2238820 5 Streptococcus pneumoniae 95.1 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 121326 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2014 Streptococcus pneumoniae Streptococcus pneumoniae ERS367632 SC 2006/2012 v1.2.4 2014-05-07T08:34:59.526 98.35 2048115 95.1 1313 2061 2024-02-06T05:05:34.000 2050805 98972 2048115 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900020765.1 type CSF 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 14.6726 https://www.ncbi.nlm.nih.gov/nuccore/FCTZ00000000.1 2014-03-18T09:35:30Z GCA_900020765.1 haploid public 2103421-sc-2013-11-05T12:02:58Z-1750183 88.76 0.31 34 2015-08-10T19:24:27 GCA_053203845.1 811166 47 11893_1#62 2103421-sc-2013-11-05T12:02:58Z-1750183 Netherlands 11893_1#62 SAMEA2238820 1313 GCF_900020765.1 Generic.1.0 88.76 SRA GCF_900020765.1 category_na live 2018-03-09T10:27:52Z 2842STDY5644194 PRJEB4909 GCF_900020765.1-RS_2025_12_21 SC SC 23 1750183 2018-03-09T10:27:52Z 2014-03-18T00:00:00.000 2103421 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCTZ01 2006/2012 2842STDY5644194 2014-03-18T09:35:30Z Prokka current 23 2103421-sc-2013-11-05T12:02:58Z-1750183 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCTZ01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644194 species_match 98.89 SAMEA2238820 5 Streptococcus pneumoniae 95.1 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 121326 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-21 species Homo sapiens 1928 Streptococcus pneumoniae Streptococcus pneumoniae ERS367632 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:59.526 98.35 2048115 95.1 1313 2138 2024-02-06T05:05:34.000 2050805 98972 2048115 CSF Homo sapiens Streptococcus pneumoniae Disease 155 EBI 100 GCA_053203845.1 GCF_900020765.1-RS_2025_12_21 SLX Streptococcus pneumoniae GCF_900020765.1 type CSF 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 14.6726 https://www.ncbi.nlm.nih.gov/nuccore/FCTZ00000000.1 2014-03-18T09:35:30Z GCF_900020765.1 haploid public 2103421-sc-2013-11-05T12:02:58Z-1750183 88.76 0.31 34 2015-08-10T19:24:27 GCA_053203845.1 811166 55 11893_1#62 2103421-sc-2013-11-05T12:02:58Z-1750183 Netherlands 11893_1#62 SAMEA2238820 1313 GCA_900020765.1 Generic.1.0 88.76 SRA GCA_900020765.1 category_na live 2018-03-09T10:27:52Z 2842STDY5644194 PRJEB4909 Annotation submitted by SC SC SC 23 1750183 2018-03-09T10:27:52Z 2014-03-18T00:00:00.000 2103421 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCTZ01 2006/2012 2842STDY5644194 6.10 2014-03-18T09:35:30Z Prokka current 23 2103421-sc-2013-11-05T12:02:58Z-1750183 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCTZ01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644194 species_match 98.89 SAMEA2238657 4 Streptococcus pneumoniae 95.21 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 164788 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2000 Streptococcus pneumoniae Streptococcus pneumoniae ERS367469 SC 2006/2012 v1.2.4 2014-05-07T08:34:47.410 98.35 2045932 95.21 1313 2046 2024-02-06T05:20:58.000 2050469 98406 2045926 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900039335.1 type CSF 98.9 ERC000011 OK 39.5 Streptococcus pneumoniae 14.6726 https://www.ncbi.nlm.nih.gov/nuccore/FEDW00000000.1 2014-03-18T09:35:30Z GCA_900039335.1 haploid public 2091165-sc-2013-11-05T12:00:11Z-1750019 88.77 0.31 44 2015-08-10T19:24:21 GCA_053203845.1 809955 46 11861_1#91 2091165-sc-2013-11-05T12:00:11Z-1750019 Netherlands 11861_1#91 SAMEA2238657 1313 GCF_900039335.1 Generic.1.0 88.77 SRA GCF_900039335.1 category_na live 2018-03-09T10:29:35Z 2842STDY5644030 PRJEB4909 GCF_900039335.1-RS_2025_09_21 SC SC 28 1750019 2018-03-09T10:29:35Z 2014-03-18T00:00:00.000 2091165 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEDW01 2006/2012 2842STDY5644030 2014-03-18T09:35:30Z Prokka current 28 2091165-sc-2013-11-05T12:00:11Z-1750019 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEDW01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644030 species_match 98.9 SAMEA2238657 4 Streptococcus pneumoniae 95.21 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 164788 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1926 Streptococcus pneumoniae Streptococcus pneumoniae ERS367469 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:47.410 98.35 2045932 95.21 1313 2135 2024-02-06T05:20:58.000 2050469 98406 2045926 CSF Homo sapiens Streptococcus pneumoniae Disease 156 EBI 100 GCA_053203845.1 GCF_900039335.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900039335.1 type CSF 98.9 ERC000011 OK 39.5 Streptococcus pneumoniae 14.6726 https://www.ncbi.nlm.nih.gov/nuccore/FEDW00000000.1 2014-03-18T09:35:30Z GCF_900039335.1 haploid public 2091165-sc-2013-11-05T12:00:11Z-1750019 88.77 0.31 44 2015-08-10T19:24:21 GCA_053203845.1 809955 53 11861_1#91 2091165-sc-2013-11-05T12:00:11Z-1750019 Netherlands 11861_1#91 SAMEA2238657 1313 GCA_900039335.1 Generic.1.0 88.77 SRA GCA_900039335.1 category_na live 2018-03-09T10:29:35Z 2842STDY5644030 PRJEB4909 Annotation submitted by SC SC SC 28 1750019 2018-03-09T10:29:35Z 2014-03-18T00:00:00.000 2091165 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEDW01 2006/2012 2842STDY5644030 6.10 2014-03-18T09:35:30Z Prokka current 28 2091165-sc-2013-11-05T12:00:11Z-1750019 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEDW01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644030 species_match 98.9 SAMEA2238941 5 Streptococcus pneumoniae 95.08 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 120842 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2025 Streptococcus pneumoniae Streptococcus pneumoniae ERS367753 SC 2006/2012 v1.2.4 2014-05-07T08:35:07.973 98.56 2051980 95.08 1313 2070 2024-02-06T05:10:30.000 2053778 96413 2051979 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900025225.1 type CSF 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 21.0166 https://www.ncbi.nlm.nih.gov/nuccore/FCWV00000000.1 2014-03-18T09:35:29Z GCA_900025225.1 haploid public 2111417-sc-2013-11-05T12:05:15Z-1750305 88.91 0.31 36 2018-03-10T18:56:50 GCA_053203845.1 812630 45 11861_3#88 2111417-sc-2013-11-05T12:05:15Z-1750305 Netherlands 11861_3#88 SAMEA2238941 1313 GCF_900025225.1 Generic.1.0 88.91 SRA GCF_900025225.1 category_na live 2018-03-09T10:28:22Z 2842STDY5644316 PRJEB4909 GCF_900025225.1-RS_2025_09_28 SC SC 30 1750305 2018-03-09T10:28:22Z 2014-03-18T00:00:00.000 2111417 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCWV01 2006/2012 2842STDY5644316 2014-03-18T09:35:29Z Prokka current 30 2111417-sc-2013-11-05T12:05:15Z-1750305 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCWV01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644316 species_match 98.89 SAMEA2238941 5 Streptococcus pneumoniae 95.08 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 120842 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1933 Streptococcus pneumoniae Streptococcus pneumoniae ERS367753 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:07.973 98.56 2051980 95.08 1313 2138 2024-02-06T05:10:30.000 2053778 96413 2051979 CSF Homo sapiens Streptococcus pneumoniae Disease 154 EBI 100 GCA_053203845.1 GCF_900025225.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900025225.1 type CSF 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 21.0166 https://www.ncbi.nlm.nih.gov/nuccore/FCWV00000000.1 2014-03-18T09:35:29Z GCF_900025225.1 haploid public 2111417-sc-2013-11-05T12:05:15Z-1750305 88.91 0.31 36 2018-03-10T18:56:50 GCA_053203845.1 812630 51 11861_3#88 2111417-sc-2013-11-05T12:05:15Z-1750305 Netherlands 11861_3#88 SAMEA2238941 1313 GCA_900025225.1 Generic.1.0 88.91 SRA GCA_900025225.1 category_na live 2018-03-09T10:28:22Z 2842STDY5644316 PRJEB4909 Annotation submitted by SC SC SC 30 1750305 2018-03-09T10:28:22Z 2014-03-18T00:00:00.000 2111417 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCWV01 2006/2012 2842STDY5644316 6.10 2014-03-18T09:35:29Z Prokka current 30 2111417-sc-2013-11-05T12:05:15Z-1750305 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCWV01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644316 species_match 98.89 SAMEA1029403 7 Streptococcus pneumoniae 91.48 Streptococcus pneumoniae 1313 PRJEB2480 7 current na 93187 type Streptococcus pneumoniae 2015-07-14 10A 10A species Homo sapiens 2010 Streptococcus pneumoniae Streptococcus pneumoniae ERS022492 SC 2010-08-20 v1.2.4 2012-02-09T20:48:33.993 99.1 2077960 91.48 1313 2050 2024-02-06T09:02:32.000 2078006 93187 2077950 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001115365.1 type nasopharynx 98.79 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CMIH00000000.1 2012-02-07T17:03:03Z GCA_001115365.1 haploid public SMRU2982-sc-2011-01-27-1063195 86.63 0.31 46 2015-07-28T08:13:16 GCA_053203845.1 821923 40 7038_6#6 SMRU2982-sc-2011-01-27-1063195 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029403 1313 GCF_001115365.1 Generic.1.0 86.63 SRA GCF_001115365.1 category_na live 2018-03-09T11:45:18Z SMRU2982 PRJEB2480 GCF_001115365.1-RS_2026_01_18 SC SC 42 2018-03-09T11:45:18Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMIH01 2010-08-20 SMRU2982 2012-02-07T17:03:03Z Prokka current 42 SMRU2982-sc-2011-01-27-1063195 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMIH01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2982 species_match 98.79 SAMEA1029403 7 Streptococcus pneumoniae 91.48 Streptococcus pneumoniae 1313 PRJEB2480 7 current na Best-placed reference protein set; GeneMarkS-2+ 93187 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 10A 10A species Homo sapiens 1922 Streptococcus pneumoniae Streptococcus pneumoniae ERS022492 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-08-20 v1.2.4 2012-02-09T20:48:33.993 99.1 2077960 91.48 1313 2132 2024-02-06T09:02:32.000 2078006 93187 2077950 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 166 EBI 100 GCA_053203845.1 GCF_001115365.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001115365.1 type nasopharynx 98.79 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CMIH00000000.1 2012-02-07T17:03:03Z GCF_001115365.1 haploid public SMRU2982-sc-2011-01-27-1063195 86.63 0.31 46 2015-07-28T08:13:16 GCA_053203845.1 821923 44 7038_6#6 SMRU2982-sc-2011-01-27-1063195 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029403 1313 GCA_001115365.1 Generic.1.0 86.63 SRA GCA_001115365.1 category_na live 2018-03-09T11:45:18Z SMRU2982 PRJEB2480 Annotation submitted by SC SC SC 42 2018-03-09T11:45:18Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMIH01 2010-08-20 SMRU2982 6.10 2012-02-07T17:03:03Z Prokka current 42 SMRU2982-sc-2011-01-27-1063195 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMIH01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2982 species_match 98.79 SAMEA1025234 8 Streptococcus pneumoniae 91.96 Streptococcus pneumoniae 1313 PRJEB2395 8 current na 85961 type Streptococcus pneumoniae 2015-07-18 10B 10B species Homo sapiens 2125 Streptococcus pneumoniae Streptococcus pneumoniae ERS020890 SC 2009-03-25 v1.2.4 2012-01-20T19:57:39.786 99.26 2119537 91.96 1313 2172 2024-02-06T09:04:01.000 2119537 85961 2119494 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001152745.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CQUX00000000.1 2011-11-15T09:28:18Z GCA_001152745.1 haploid public SMRU1380-sc-2011-01-27-1061593 88.82 0.99 60 2015-07-28T08:11:39 GCA_053203845.1 835730 47 6710_7#12 SMRU1380-sc-2011-01-27-1061593 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025234 1313 GCF_001152745.1 Generic.1.0 88.82 SRA GCF_001152745.1 category_na live 2018-03-09T12:06:21Z SMRU1380 PRJEB2395 GCF_001152745.1-RS_2026_01_25 SC SC 60 2018-03-09T12:06:21Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQUX01 2009-03-25 SMRU1380 2011-11-15T09:28:18Z Prokka current 60 SMRU1380-sc-2011-01-27-1061593 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQUX01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1380 species_match 98.73 SAMEA1025234 8 Streptococcus pneumoniae 91.96 Streptococcus pneumoniae 1313 PRJEB2395 8 current na Best-placed reference protein set; GeneMarkS-2+ 85961 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 10B 10B species Homo sapiens 2037 Streptococcus pneumoniae Streptococcus pneumoniae ERS020890 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-25 v1.2.4 2012-01-20T19:57:39.786 99.26 2119537 91.96 1313 2268 2024-02-06T09:04:01.000 2119537 85961 2119494 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 181 EBI 100 GCA_053203845.1 GCF_001152745.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001152745.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CQUX00000000.1 2011-11-15T09:28:18Z GCF_001152745.1 haploid public SMRU1380-sc-2011-01-27-1061593 88.82 0.99 60 2015-07-28T08:11:39 GCA_053203845.1 835730 50 6710_7#12 SMRU1380-sc-2011-01-27-1061593 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025234 1313 GCA_001152745.1 Generic.1.0 88.82 SRA GCA_001152745.1 category_na live 2018-03-09T12:06:21Z SMRU1380 PRJEB2395 Annotation submitted by SC SC SC 60 2018-03-09T12:06:21Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQUX01 2009-03-25 SMRU1380 6.10 2011-11-15T09:28:18Z Prokka current 60 SMRU1380-sc-2011-01-27-1061593 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQUX01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1380 species_match 98.73 SAMEA1024904 8 Streptococcus pneumoniae 93.89 Streptococcus pneumoniae 1313 PRJEB2393 8 current na 83464 type Streptococcus pneumoniae 2015-07-17 10B 10B species Homo sapiens 2047 Streptococcus pneumoniae Streptococcus pneumoniae ERS020154 SC 2008-08-11 v1.2.4 2012-01-20T19:49:31.300 99.26 2071349 93.89 1313 2091 2024-02-06T09:04:07.000 2071360 83464 2071320 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001163805.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CRQV00000000.1 2011-12-05T16:07:35Z GCA_001163805.1 haploid public SMRU644-sc-2011-01-27-1060833 88.62 0.4 54 2015-07-28T08:12:00 GCA_053203845.1 817676 44 6791_6#20 SMRU644-sc-2011-01-27-1060833 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024904 1313 GCF_001163805.1 Generic.1.0 88.62 SRA GCF_001163805.1 category_na live 2018-03-09T12:08:16Z SMRU644 PRJEB2393 GCF_001163805.1-RS_2026_01_25 SC SC 53 2018-03-09T12:08:16Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRQV01 2008-08-11 SMRU644 2011-12-05T16:07:35Z Prokka current 53 SMRU644-sc-2011-01-27-1060833 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRQV01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU644 species_match 98.75 SAMEA1024904 8 Streptococcus pneumoniae 93.89 Streptococcus pneumoniae 1313 PRJEB2393 8 current na Best-placed reference protein set; GeneMarkS-2+ 83464 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 10B 10B species Homo sapiens 1967 Streptococcus pneumoniae Streptococcus pneumoniae ERS020154 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-08-11 v1.2.4 2012-01-20T19:49:31.300 99.26 2071349 93.89 1313 2197 2024-02-06T09:04:07.000 2071360 83464 2071320 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 183 EBI 100 GCA_053203845.1 GCF_001163805.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001163805.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CRQV00000000.1 2011-12-05T16:07:35Z GCF_001163805.1 haploid public SMRU644-sc-2011-01-27-1060833 88.62 0.4 54 2015-07-28T08:12:00 GCA_053203845.1 817676 47 6791_6#20 SMRU644-sc-2011-01-27-1060833 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024904 1313 GCA_001163805.1 Generic.1.0 88.62 SRA GCA_001163805.1 category_na live 2018-03-09T12:08:16Z SMRU644 PRJEB2393 Annotation submitted by SC SC SC 53 2018-03-09T12:08:16Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRQV01 2008-08-11 SMRU644 6.10 2011-12-05T16:07:35Z Prokka current 53 SMRU644-sc-2011-01-27-1060833 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRQV01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU644 species_match 98.75 SAMEA1026587 6 Streptococcus pneumoniae 94.34 Streptococcus pneumoniae 1313 PRJEB2417 10 current na 104606 type Streptococcus pneumoniae 2017-06-27 10A 10A species Homo sapiens 1985 Streptococcus pneumoniae ERS025161 SC 2011-01-18 v1.2.4 2012-01-20T20:29:51.883 99.14 2042101 94.34 1313 2032 2017-06-24T15:59:45.000 2046000 81396 2042101 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900193325.1 type Nasophaynx 98.96 OK 39.5 Streptococcus pneumoniae 64.5925 https://www.ncbi.nlm.nih.gov/nuccore/FYWY00000000.1 2011-09-14 GCA_900193325.1 haploid ERS025161 87.79 0.33 45 2017-06-28T08:06:14 GCA_053203845.1 807430 47 6486_8#12 United Kingdom UoS5149-sc-2011-03-11-1098971; 6486_812 1313 GCF_900193325.1 Generic.1.0 87.79 SRA Sample Description GCF_900193325.1 category_na live 2017-06-22 UoS5149 PRJEB2417 GCF_900193325.1-RS_2025_08_30 SC 31 1098971 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYWY01 2011-01-18 UoS5149 Prokka current 31 ERS025161 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYWY01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS5149 species_match 98.96 SAMEA1026587 6 Streptococcus pneumoniae 94.34 Streptococcus pneumoniae 1313 PRJEB2417 10 current na Best-placed reference protein set; GeneMarkS-2+ 104606 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-30 10A 10A species Homo sapiens 1908 Streptococcus pneumoniae ERS025161 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2011-01-18 v1.2.4 2012-01-20T20:29:51.883 99.14 2042101 94.34 1313 2110 2017-06-24T15:59:45.000 2046000 81396 2042101 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 153 EBI 100 GCA_053203845.1 GCF_900193325.1-RS_2025_08_30 SLX Streptococcus pneumoniae GCF_900193325.1 type Nasophaynx 98.96 OK 39.5 Streptococcus pneumoniae 64.5925 https://www.ncbi.nlm.nih.gov/nuccore/FYWY00000000.1 2011-09-14 GCF_900193325.1 haploid ERS025161 87.79 0.33 45 2017-06-28T08:06:14 GCA_053203845.1 807430 49 6486_8#12 United Kingdom UoS5149-sc-2011-03-11-1098971; 6486_812 1313 GCA_900193325.1 Generic.1.0 87.79 SRA Sample Description GCA_900193325.1 category_na live 2017-06-22 UoS5149 PRJEB2417 Annotation submitted by SC SC 31 1098971 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYWY01 2011-01-18 UoS5149 6.10 Prokka current 31 ERS025161 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYWY01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS5149 species_match 98.96 SAMEA971410 8 Streptococcus pneumoniae 91.58 Streptococcus pneumoniae 1313 PRJEB2110 8 current na 114200 type Streptococcus pneumoniae 2016-02-13 10B 10B species Homo sapiens 2134 Streptococcus pneumoniae Streptococcus pneumoniae ERS008345 SC v1.2.4 2011-02-14T19:06:54.000 99.24 2141026 91.58 1313 2185 2024-02-06T09:23:24.000 2141026 114200 2141024 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900049195.1 type CSF 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 72.4281 https://www.ncbi.nlm.nih.gov/nuccore/FIVU00000000.1 2011-02-14T17:17:24Z GCA_900049195.1 haploid public B14457-sc-2010-05-07-40399 89.36 0.47 67 2018-03-10T08:12:24 GCA_053203845.1 841358 51 4995_7#3 B14457-sc-2010-05-07-40399 Malawi 4995_7#3 SAMEA971410 1313 GCF_900049195.1 Generic.1.0 89.36 SRA GCF_900049195.1 category_na live 2018-03-09T13:35:41Z B14457 PRJEB2110 GCF_900049195.1-RS_2026_02_10 SC SC 67 40399 2018-03-09T13:35:41Z 2011-02-14T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIVU01 B14457 2011-02-14T17:17:24Z Prokka current 67 B14457-sc-2010-05-07-40399 Generic Pneumococcal in morbus diversity (QEH, Blantyre, Malawi) FIVU01 Contig SOURCE_DATABASE_GENBANK Malawi 2016-02-13 B14457 species_match 98.71 SAMEA971410 8 Streptococcus pneumoniae 91.58 Streptococcus pneumoniae 1313 PRJEB2110 8 current na Best-placed reference protein set; GeneMarkS-2+ 114200 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-10 10B 10B species Homo sapiens 2030 Streptococcus pneumoniae Streptococcus pneumoniae ERS008345 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq v1.2.4 2011-02-14T19:06:54.000 99.24 2141026 91.58 1313 2275 2024-02-06T09:23:24.000 2141026 114200 2141024 CSF Homo sapiens Streptococcus pneumoniae Disease 192 EBI 100 GCA_053203845.1 GCF_900049195.1-RS_2026_02_10 SLX Streptococcus pneumoniae GCF_900049195.1 type CSF 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 72.4281 https://www.ncbi.nlm.nih.gov/nuccore/FIVU00000000.1 2011-02-14T17:17:24Z GCF_900049195.1 haploid public B14457-sc-2010-05-07-40399 89.36 0.47 67 2018-03-10T08:12:24 GCA_053203845.1 841358 53 4995_7#3 B14457-sc-2010-05-07-40399 Malawi 4995_7#3 SAMEA971410 1313 GCA_900049195.1 Generic.1.0 89.36 SRA GCA_900049195.1 category_na live 2018-03-09T13:35:41Z B14457 PRJEB2110 Annotation submitted by SC SC SC 67 40399 2018-03-09T13:35:41Z 2011-02-14T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIVU01 B14457 6.10 2011-02-14T17:17:24Z Prokka current 67 B14457-sc-2010-05-07-40399 Generic Pneumococcal in morbus diversity (QEH, Blantyre, Malawi) FIVU01 Contig SOURCE_DATABASE_REFSEQ Malawi 2016-02-13 B14457 species_match 98.71 SAMEA1023844 7 Streptococcus pneumoniae 93.54 Streptococcus pneumoniae 1313 PRJEB2357 7 current na 96942 type Streptococcus pneumoniae 2015-07-11 10B 10B species Homo sapiens 2068 Streptococcus pneumoniae Streptococcus pneumoniae ERS019603 SC 2008-06-09 v1.2.4 2012-01-20T19:46:01.023 99.26 2080946 93.54 1313 2108 2024-02-05T16:30:20.000 2080946 96942 2080899 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001152605.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CKIO00000000.1 2011-10-11T09:20:03Z GCA_001152605.1 haploid public SMRU445-sc-2011-01-27-1060634 88.7 1.34 49 2016-01-29T08:05:23 GCA_053203845.1 821469 40 6631_4#13 SMRU445-sc-2011-01-27-1060634 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023844 1313 GCF_001152605.1 Generic.1.0 88.7 SRA GCF_001152605.1 category_na live 2018-03-09T09:53:05Z SMRU445 PRJEB2357 GCF_001152605.1-RS_2026_01_31 SC SC 49 2018-03-09T09:53:05Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKIO01 2008-06-09 10B 2011-10-11T09:20:03Z Prokka current 49 SMRU445-sc-2011-01-27-1060634 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKIO01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU445 species_match 98.74 SAMEA1023844 7 Streptococcus pneumoniae 93.54 Streptococcus pneumoniae 1313 PRJEB2357 7 current na Best-placed reference protein set; GeneMarkS-2+ 96942 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 10B 10B species Homo sapiens 1969 Streptococcus pneumoniae Streptococcus pneumoniae ERS019603 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-06-09 v1.2.4 2012-01-20T19:46:01.023 99.26 2080946 93.54 1313 2198 2024-02-05T16:30:20.000 2080946 96942 2080899 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 187 EBI 100 GCA_053203845.1 GCF_001152605.1-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_001152605.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CKIO00000000.1 2011-10-11T09:20:03Z GCF_001152605.1 haploid public SMRU445-sc-2011-01-27-1060634 88.7 1.34 49 2016-01-29T08:05:23 GCA_053203845.1 821469 42 6631_4#13 SMRU445-sc-2011-01-27-1060634 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023844 1313 GCA_001152605.1 Generic.1.0 88.7 SRA GCA_001152605.1 category_na live 2018-03-09T09:53:05Z SMRU445 PRJEB2357 Annotation submitted by SC SC SC 49 2018-03-09T09:53:05Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKIO01 2008-06-09 SMRU445 6.10 2011-10-11T09:20:03Z Prokka current 49 SMRU445-sc-2011-01-27-1060634 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKIO01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU445 species_match 98.74 SAMEA1025454 8 Streptococcus pneumoniae 92.1 Streptococcus pneumoniae 1313 PRJEB2395 8 current na 93493 type Streptococcus pneumoniae 2015-07-18 10B 10B species Homo sapiens 2114 Streptococcus pneumoniae Streptococcus pneumoniae ERS020690 SC 2009-01-19 v1.2.4 2012-01-20T19:55:28.673 99.22 2115110 92.1 1313 2159 2024-02-06T09:04:18.000 2115120 93493 2115076 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001202355.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 71.0838 https://www.ncbi.nlm.nih.gov/nuccore/CRPB00000000.1 2011-11-15T17:01:01Z GCA_001202355.1 haploid public SMRU1180-sc-2011-01-27-1061393 88.77 1.15 57 2015-07-28T08:11:29 GCA_053203845.1 834308 45 6755_6#4 SMRU1180-sc-2011-01-27-1061393 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025454 1313 GCF_001202355.1 Generic.1.0 88.77 SRA GCF_001202355.1 category_na live 2018-03-09T12:11:21Z SMRU1180 PRJEB2395 GCF_001202355.1-RS_2026_01_25 SC SC 56 2018-03-09T12:11:21Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRPB01 2009-01-19 SMRU1180 2011-11-15T17:01:01Z Prokka current 56 SMRU1180-sc-2011-01-27-1061393 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRPB01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1180 species_match 98.72 SAMEA1025454 8 Streptococcus pneumoniae 92.1 Streptococcus pneumoniae 1313 PRJEB2395 8 current na Best-placed reference protein set; GeneMarkS-2+ 93493 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 10B 10B species Homo sapiens 2016 Streptococcus pneumoniae Streptococcus pneumoniae ERS020690 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-01-19 v1.2.4 2012-01-20T19:55:28.673 99.22 2115110 92.1 1313 2248 2024-02-06T09:04:18.000 2115120 93493 2115076 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 185 EBI 100 GCA_053203845.1 GCF_001202355.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001202355.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 71.0838 https://www.ncbi.nlm.nih.gov/nuccore/CRPB00000000.1 2011-11-15T17:01:01Z GCF_001202355.1 haploid public SMRU1180-sc-2011-01-27-1061393 88.77 1.15 57 2015-07-28T08:11:29 GCA_053203845.1 834308 47 6755_6#4 SMRU1180-sc-2011-01-27-1061393 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025454 1313 GCA_001202355.1 Generic.1.0 88.77 SRA GCA_001202355.1 category_na live 2018-03-09T12:11:21Z SMRU1180 PRJEB2395 Annotation submitted by SC SC SC 56 2018-03-09T12:11:21Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRPB01 2009-01-19 SMRU1180 6.10 2011-11-15T17:01:01Z Prokka current 56 SMRU1180-sc-2011-01-27-1061393 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRPB01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1180 species_match 98.72 SAMEA1024193 9 Streptococcus pneumoniae 92.56 Streptococcus pneumoniae 1313 PRJEB2357 10 current na 96795 type Streptococcus pneumoniae 2015-07-11 10B 10B species Homo sapiens 2096 Streptococcus pneumoniae Streptococcus pneumoniae ERS019255 SC 2008-02-12 v1.2.4 2012-01-20T19:42:06.620 99.26 2104302 92.56 1313 2137 2024-02-05T21:30:58.000 2104469 93080 2104281 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001094185.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CKBY00000000.1 2011-10-11T09:20:07Z GCA_001094185.1 haploid public SMRU97-sc-2011-01-27-1060286 88.76 0.36 59 2016-01-29T08:05:16 GCA_053203845.1 829845 41 6593_4#1 SMRU97-sc-2011-01-27-1060286 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024193 1313 GCF_001094185.1 Generic.1.0 88.76 SRA GCF_001094185.1 category_na live 2018-03-09T09:59:28Z SMRU97 PRJEB2357 GCF_001094185.1-RS_2026_01_30 SC SC 58 2018-03-09T09:59:28Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKBY01 2008-02-12 10B 2011-10-11T09:20:07Z Prokka current 58 SMRU97-sc-2011-01-27-1060286 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKBY01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU97 species_match 98.73 SAMEA1024193 9 Streptococcus pneumoniae 92.56 Streptococcus pneumoniae 1313 PRJEB2357 10 current na Best-placed reference protein set; GeneMarkS-2+ 96795 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-30 10B 10B species Homo sapiens 2009 Streptococcus pneumoniae Streptococcus pneumoniae ERS019255 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-02-12 v1.2.4 2012-01-20T19:42:06.620 99.26 2104302 92.56 1313 2238 2024-02-05T21:30:58.000 2104469 93080 2104281 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 186 EBI 100 GCA_053203845.1 GCF_001094185.1-RS_2026_01_30 SLX Streptococcus pneumoniae GCF_001094185.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CKBY00000000.1 2011-10-11T09:20:07Z GCF_001094185.1 haploid public SMRU97-sc-2011-01-27-1060286 88.76 0.36 59 2016-01-29T08:05:16 GCA_053203845.1 829845 43 6593_4#1 SMRU97-sc-2011-01-27-1060286 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024193 1313 GCA_001094185.1 Generic.1.0 88.76 SRA GCA_001094185.1 category_na live 2018-03-09T09:59:28Z SMRU97 PRJEB2357 Annotation submitted by SC SC SC 58 2018-03-09T09:59:28Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKBY01 2008-02-12 SMRU97 6.10 2011-10-11T09:20:07Z Prokka current 58 SMRU97-sc-2011-01-27-1060286 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKBY01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU97 species_match 98.73 SAMEA1028691 8 Streptococcus pneumoniae 94.34 Streptococcus pneumoniae 1313 PRJEB2479 8 current na 86000 type Streptococcus pneumoniae 2015-07-13 10B 10B species Homo sapiens 2047 Streptococcus pneumoniae Streptococcus pneumoniae ERS022053 SC 2010-03-23 v1.2.4 2012-01-20T20:11:02.810 99.03 2066312 94.34 1313 2090 2024-02-06T09:02:50.000 2066312 86000 2066300 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001111705.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 48.9021 https://www.ncbi.nlm.nih.gov/nuccore/CLJY00000000.1 2012-01-05T09:56:38Z GCA_001111705.1 haploid public SMRU2543-sc-2011-01-27-1062756 88.84 0.31 45 2015-07-28T08:12:37 GCA_053203845.1 815361 43 6925_8#23 SMRU2543-sc-2011-01-27-1062756 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028691 1313 GCF_001111705.1 Generic.1.0 88.84 SRA GCF_001111705.1 category_na live 2018-03-09T11:49:04Z SMRU2543 PRJEB2479 GCF_001111705.1-RS_2026_01_25 SC SC 45 2018-03-09T11:49:04Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLJY01 2010-03-23 SMRU2543 2012-01-05T09:56:38Z Prokka current 45 SMRU2543-sc-2011-01-27-1062756 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLJY01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2543 species_match 98.74 SAMEA1028691 8 Streptococcus pneumoniae 94.34 Streptococcus pneumoniae 1313 PRJEB2479 8 current na Best-placed reference protein set; GeneMarkS-2+ 86000 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 10B 10B species Homo sapiens 1952 Streptococcus pneumoniae Streptococcus pneumoniae ERS022053 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-03-23 v1.2.4 2012-01-20T20:11:02.810 99.03 2066312 94.34 1313 2179 2024-02-06T09:02:50.000 2066312 86000 2066300 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 182 EBI 100 GCA_053203845.1 GCF_001111705.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001111705.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 48.9021 https://www.ncbi.nlm.nih.gov/nuccore/CLJY00000000.1 2012-01-05T09:56:38Z GCF_001111705.1 haploid public SMRU2543-sc-2011-01-27-1062756 88.84 0.31 45 2015-07-28T08:12:37 GCA_053203845.1 815361 45 6925_8#23 SMRU2543-sc-2011-01-27-1062756 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028691 1313 GCA_001111705.1 Generic.1.0 88.84 SRA GCA_001111705.1 category_na live 2018-03-09T11:49:04Z SMRU2543 PRJEB2479 Annotation submitted by SC SC SC 45 2018-03-09T11:49:04Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLJY01 2010-03-23 SMRU2543 6.10 2012-01-05T09:56:38Z Prokka current 45 SMRU2543-sc-2011-01-27-1062756 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLJY01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2543 species_match 98.74 SAMEA1028914 9 Streptococcus pneumoniae 92.31 Streptococcus pneumoniae 1313 PRJEB2479 10 current na 87454 type Streptococcus pneumoniae 2015-07-13 10B 10B species Homo sapiens 2104 Streptococcus pneumoniae Streptococcus pneumoniae ERS021929 SC 2010-02-12 v1.2.4 2012-01-20T20:09:52.333 99.06 2111890 92.31 1313 2144 2024-02-05T16:15:31.000 2111945 79205 2111855 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001131825.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CLOC00000000.1 2012-01-05T09:56:34Z GCA_001131825.1 haploid public SMRU2419-sc-2011-01-27-1062632 88.84 2.08 55 2015-07-28T08:12:32 GCA_053203845.1 833059 40 6949_1#19 SMRU2419-sc-2011-01-27-1062632 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028914 1313 GCF_001131825.1 Generic.1.0 88.84 SRA GCF_001131825.1 category_na live 2018-03-09T09:52:53Z SMRU2419 PRJEB2479 GCF_001131825.1-RS_2026_01_31 SC SC 50 2018-03-09T09:52:53Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLOC01 2010-02-12 SMRU2419 2012-01-05T09:56:34Z Prokka current 50 SMRU2419-sc-2011-01-27-1062632 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLOC01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2419 species_match 98.73 SAMEA1028914 9 Streptococcus pneumoniae 92.31 Streptococcus pneumoniae 1313 PRJEB2479 10 current na Best-placed reference protein set; GeneMarkS-2+ 87454 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 10B 10B species Homo sapiens 2011 Streptococcus pneumoniae Streptococcus pneumoniae ERS021929 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-02-12 v1.2.4 2012-01-20T20:09:52.333 99.06 2111890 92.31 1313 2249 2024-02-05T16:15:31.000 2111945 79205 2111855 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 194 EBI 100 GCA_053203845.1 GCF_001131825.1-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_001131825.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CLOC00000000.1 2012-01-05T09:56:34Z GCF_001131825.1 haploid public SMRU2419-sc-2011-01-27-1062632 88.84 2.08 55 2015-07-28T08:12:32 GCA_053203845.1 833059 44 6949_1#19 SMRU2419-sc-2011-01-27-1062632 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028914 1313 GCA_001131825.1 Generic.1.0 88.84 SRA GCA_001131825.1 category_na live 2018-03-09T09:52:53Z SMRU2419 PRJEB2479 Annotation submitted by SC SC SC 50 2018-03-09T09:52:53Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLOC01 2010-02-12 SMRU2419 6.10 2012-01-05T09:56:34Z Prokka current 50 SMRU2419-sc-2011-01-27-1062632 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLOC01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2419 species_match 98.73 SAMEA1029108 8 Streptococcus pneumoniae 92.37 Streptococcus pneumoniae 1313 PRJEB2479 9 current na 75653 type Streptococcus pneumoniae 2015-07-13 10B 10B species Homo sapiens 2077 Streptococcus pneumoniae Streptococcus pneumoniae ERS022143 SC 2010-04-16 v1.2.4 2012-01-20T20:12:06.020 99.26 2099977 92.37 1313 2132 2024-02-06T09:02:17.000 2100061 75653 2099950 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001137845.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CLTJ00000000.1 2012-01-16T15:10:28Z GCA_001137845.1 haploid public SMRU2633-sc-2011-01-27-1062846 88.4 0.73 69 2015-07-28T08:12:56 GCA_053203845.1 829334 55 6972_5#17 SMRU2633-sc-2011-01-27-1062846 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029108 1313 GCF_001137845.1 Generic.1.0 88.4 SRA GCF_001137845.1 category_na live 2018-03-09T11:42:13Z SMRU2633 PRJEB2479 GCF_001137845.1-RS_2026_01_25 SC SC 64 2018-03-09T11:42:13Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLTJ01 2010-04-16 SMRU2633 2012-01-16T15:10:28Z Prokka current 64 SMRU2633-sc-2011-01-27-1062846 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLTJ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2633 species_match 98.74 SAMEA1029108 8 Streptococcus pneumoniae 92.37 Streptococcus pneumoniae 1313 PRJEB2479 9 current na Best-placed reference protein set; GeneMarkS-2+ 75653 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 10B 10B species Homo sapiens 2012 Streptococcus pneumoniae Streptococcus pneumoniae ERS022143 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-04-16 v1.2.4 2012-01-20T20:12:06.020 99.26 2099977 92.37 1313 2250 2024-02-06T09:02:17.000 2100061 75653 2099950 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 181 EBI 100 GCA_053203845.1 GCF_001137845.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001137845.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CLTJ00000000.1 2012-01-16T15:10:28Z GCF_001137845.1 haploid public SMRU2633-sc-2011-01-27-1062846 88.4 0.73 69 2015-07-28T08:12:56 GCA_053203845.1 829334 57 6972_5#17 SMRU2633-sc-2011-01-27-1062846 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029108 1313 GCA_001137845.1 Generic.1.0 88.4 SRA GCA_001137845.1 category_na live 2018-03-09T11:42:13Z SMRU2633 PRJEB2479 Annotation submitted by SC SC SC 64 2018-03-09T11:42:13Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLTJ01 2010-04-16 SMRU2633 6.10 2012-01-16T15:10:28Z Prokka current 64 SMRU2633-sc-2011-01-27-1062846 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLTJ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2633 species_match 98.74 SAMEA1025804 9 Streptococcus pneumoniae 89.94 Streptococcus pneumoniae 1313 PRJEB2397 9 current na 75038 type Streptococcus pneumoniae 2015-07-18 10B 10B species Homo sapiens 2153 Streptococcus pneumoniae Streptococcus pneumoniae ERS021256 SC 2009-07-18 v1.2.4 2012-01-20T20:01:42.690 99.26 2167308 89.94 1313 2208 2024-02-05T16:22:11.000 2167548 75038 2167288 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001155145.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CRVO00000000.1 2011-11-29T12:03:46Z GCA_001155145.1 haploid public SMRU1746-sc-2011-01-27-1061959 88.83 2.65 72 2015-07-28T08:11:59 GCA_053203845.1 854253 55 6805_7#17 SMRU1746-sc-2011-01-27-1061959 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025804 1313 GCF_001155145.1 Generic.1.0 88.83 SRA GCF_001155145.1 category_na live 2018-03-09T09:52:58Z SMRU1746 PRJEB2397 GCF_001155145.1-RS_2026_02_04 SC SC 69 2018-03-09T09:52:58Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRVO01 2009-07-18 SMRU1746 2011-11-29T12:03:46Z Prokka current 69 SMRU1746-sc-2011-01-27-1061959 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRVO01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1746 species_match 98.74 SAMEA1025804 9 Streptococcus pneumoniae 89.94 Streptococcus pneumoniae 1313 PRJEB2397 9 current na Best-placed reference protein set; GeneMarkS-2+ 75038 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-04 10B 10B species Homo sapiens 2064 Streptococcus pneumoniae Streptococcus pneumoniae ERS021256 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-07-18 v1.2.4 2012-01-20T20:01:42.690 99.26 2167308 89.94 1313 2315 2024-02-05T16:22:11.000 2167548 75038 2167288 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 194 EBI 100 GCA_053203845.1 GCF_001155145.1-RS_2026_02_04 SLX Streptococcus pneumoniae GCF_001155145.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CRVO00000000.1 2011-11-29T12:03:46Z GCF_001155145.1 haploid public SMRU1746-sc-2011-01-27-1061959 88.83 2.65 72 2015-07-28T08:11:59 GCA_053203845.1 854253 57 6805_7#17 SMRU1746-sc-2011-01-27-1061959 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025804 1313 GCA_001155145.1 Generic.1.0 88.83 SRA GCA_001155145.1 category_na live 2018-03-09T09:52:58Z SMRU1746 PRJEB2397 Annotation submitted by SC SC SC 69 2018-03-09T09:52:58Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRVO01 2009-07-18 SMRU1746 6.10 2011-11-29T12:03:46Z Prokka current 69 SMRU1746-sc-2011-01-27-1061959 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRVO01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1746 species_match 98.74 SAMEA1025357 10 Streptococcus pneumoniae 93.98 Streptococcus pneumoniae 1313 PRJEB2395 10 current na 73562 type Streptococcus pneumoniae 2015-07-17 10B 10B species Homo sapiens 2045 Streptococcus pneumoniae Streptococcus pneumoniae ERS020990 SC 2009-04-30 v1.2.4 2012-01-20T19:58:47.213 99.26 2067128 93.98 1313 2085 2024-02-06T09:03:59.000 2067128 73562 2067108 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001109585.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CRIU00000000.1 2011-11-15T17:01:00Z GCA_001109585.1 haploid public SMRU1480-sc-2011-01-27-1061693 88.53 1.24 64 2015-07-28T08:11:42 GCA_053203845.1 815746 40 6753_1#16 SMRU1480-sc-2011-01-27-1061693 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025357 1313 GCF_001109585.1 Generic.1.0 88.53 SRA GCF_001109585.1 category_na live 2018-03-09T12:05:28Z SMRU1480 PRJEB2395 GCF_001109585.1-RS_2026_01_25 SC SC 64 2018-03-09T12:05:28Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRIU01 2009-04-30 SMRU1480 2011-11-15T17:01:00Z Prokka current 64 SMRU1480-sc-2011-01-27-1061693 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRIU01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1480 species_match 98.75 SAMEA1025357 10 Streptococcus pneumoniae 93.98 Streptococcus pneumoniae 1313 PRJEB2395 10 current na Best-placed reference protein set; GeneMarkS-2+ 73562 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 10B 10B species Homo sapiens 1967 Streptococcus pneumoniae Streptococcus pneumoniae ERS020990 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-30 v1.2.4 2012-01-20T19:58:47.213 99.26 2067128 93.98 1313 2191 2024-02-06T09:03:59.000 2067128 73562 2067108 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 182 EBI 100 GCA_053203845.1 GCF_001109585.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001109585.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CRIU00000000.1 2011-11-15T17:01:00Z GCF_001109585.1 haploid public SMRU1480-sc-2011-01-27-1061693 88.53 1.24 64 2015-07-28T08:11:42 GCA_053203845.1 815746 42 6753_1#16 SMRU1480-sc-2011-01-27-1061693 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025357 1313 GCA_001109585.1 Generic.1.0 88.53 SRA GCA_001109585.1 category_na live 2018-03-09T12:05:28Z SMRU1480 PRJEB2395 Annotation submitted by SC SC SC 64 2018-03-09T12:05:28Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRIU01 2009-04-30 SMRU1480 6.10 2011-11-15T17:01:00Z Prokka current 64 SMRU1480-sc-2011-01-27-1061693 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRIU01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1480 species_match 98.75 SAMEA1025752 12 Streptococcus pneumoniae 92.06 Streptococcus pneumoniae 1313 PRJEB2397 13 current na 62023 type Streptococcus pneumoniae 2015-07-18 10B 10B species Homo sapiens 2103 Streptococcus pneumoniae Streptococcus pneumoniae ERS021251 SC 2009-07-17 v1.2.4 2012-01-20T20:01:39.040 99.26 2115751 92.06 1313 2146 2024-02-06T09:04:10.000 2115773 60076 2115730 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001150285.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CRVJ00000000.1 2011-11-29T12:03:48Z GCA_001150285.1 haploid public SMRU1741-sc-2011-01-27-1061954 88.76 1.2 71 2015-07-28T08:11:58 GCA_053203845.1 834610 43 6805_7#12 SMRU1741-sc-2011-01-27-1061954 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025752 1313 GCF_001150285.1 Generic.1.0 88.76 SRA GCF_001150285.1 category_na live 2018-03-09T12:09:11Z SMRU1741 PRJEB2397 GCF_001150285.1-RS_2026_01_25 SC SC 69 2018-03-09T12:09:11Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRVJ01 2009-07-17 SMRU1741 2011-11-29T12:03:48Z Prokka current 69 SMRU1741-sc-2011-01-27-1061954 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRVJ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1741 species_match 98.72 SAMEA1025752 12 Streptococcus pneumoniae 92.06 Streptococcus pneumoniae 1313 PRJEB2397 13 current na Best-placed reference protein set; GeneMarkS-2+ 62023 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 10B 10B species Homo sapiens 2025 Streptococcus pneumoniae Streptococcus pneumoniae ERS021251 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-07-17 v1.2.4 2012-01-20T20:01:39.040 99.26 2115751 92.06 1313 2250 2024-02-06T09:04:10.000 2115773 60076 2115730 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 180 EBI 100 GCA_053203845.1 GCF_001150285.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001150285.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CRVJ00000000.1 2011-11-29T12:03:48Z GCF_001150285.1 haploid public SMRU1741-sc-2011-01-27-1061954 88.76 1.2 71 2015-07-28T08:11:58 GCA_053203845.1 834610 45 6805_7#12 SMRU1741-sc-2011-01-27-1061954 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025752 1313 GCA_001150285.1 Generic.1.0 88.76 SRA GCA_001150285.1 category_na live 2018-03-09T12:09:11Z SMRU1741 PRJEB2397 Annotation submitted by SC SC SC 69 2018-03-09T12:09:11Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRVJ01 2009-07-17 SMRU1741 6.10 2011-11-29T12:03:48Z Prokka current 69 SMRU1741-sc-2011-01-27-1061954 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRVJ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1741 species_match 98.72 SAMEA2341150 1 Streptococcus pneumoniae 92.51 Streptococcus pneumoniae 1313 PRJEB31141 5 current na 2114173 type Streptococcus pneumoniae 2019-02-20 10B 10B species Homo sapiens 2104 Streptococcus pneumoniae Streptococcus pneumoniae ERS398821 WTSI 2000 v1.2.4 2014-05-13T08:06:16.193 99.26 2113139 92.51 1313 2152 Streptococcus pneumoniae 2024-02-06T15:52:45.000 2114173 147526 2113139 blood Homo sapiens Streptococcus pneumoniae Septicaemia 1 ST7055 EBI 194 GCA_053203845.1 Annotation submitted by WTSI SLX Streptococcus pneumoniae GCA_900692655.1 type blood 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 2014-05-12T16:56:55Z GCA_900692655.1 haploid public D7638-sc-1811229 89.09 0.47 22 2017-10-07T09:05:50 GCA_053203845.1 831229 48 12290_3#27-2 D7638-sc-1811229 Malawi 12290_3#27 SAMEA2341150 1313 GCF_900692655.1 Generic.1.0 89.09 SRA GCF_900692655.1 category_na live 2019-04-18T15:32:36Z GPSC30 PRJEB31141 GCF_900692655.1-RS_2026_02_12 WTSI SC 1 1811229 2019-04-18T15:32:36Z 2014-05-12T00:00:00.000 D7638 2000 2245STDY5699394 2014-05-12T16:56:55Z velvet current 1 D7638-sc-1811229 Generic Reference genome for Global Pneumococcal Sequence (GPS ) project Chromosome SOURCE_DATABASE_GENBANK Malawi 2019-02-20 GPSC30 species_match 98.71 SAMEA2341150 1 Streptococcus pneumoniae 92.51 Streptococcus pneumoniae 1313 PRJEB31141 5 current na Best-placed reference protein set; GeneMarkS-2+ 2114173 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-12 10B 10B species Homo sapiens 1996 Streptococcus pneumoniae Streptococcus pneumoniae ERS398821 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2000 v1.2.4 2014-05-13T08:06:16.193 99.26 2113139 92.51 1313 2235 Streptococcus pneumoniae 2024-02-06T15:52:45.000 2114173 147526 2113139 blood Homo sapiens Streptococcus pneumoniae Septicaemia 189 1 ST7055 EBI 194 GCA_053203845.1 GCF_900692655.1-RS_2026_02_12 SLX Streptococcus pneumoniae GCF_900692655.1 type blood 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 2014-05-12T16:56:55Z GCF_900692655.1 haploid public D7638-sc-1811229 89.09 0.47 22 2017-10-07T09:05:50 GCA_053203845.1 831229 50 12290_3#27-2 D7638-sc-1811229 Malawi 12290_3#27 SAMEA2341150 1313 GCA_900692655.1 Generic.1.0 89.09 SRA GCA_900692655.1 category_na live 2019-04-18T15:32:36Z GPSC30 PRJEB31141 Annotation submitted by WTSI WTSI SC 1 1811229 2019-04-18T15:32:36Z 2014-05-12T00:00:00.000 D7638 2000 GPSC30 substr. ST7055 6.10 2014-05-12T16:56:55Z velvet current 1 D7638-sc-1811229 Generic Reference genome for Global Pneumococcal Sequence (GPS ) project Chromosome SOURCE_DATABASE_REFSEQ Malawi 2019-02-20 GPSC30 species_match 98.71 SAMEA1033570 10 Streptococcus pneumoniae 92.11 Streptococcus pneumoniae 1313 PRJEB2656 10 current na 84273 type Streptococcus pneumoniae 2016-02-13 10B 10B species Homo sapiens 2110 Streptococcus pneumoniae Streptococcus pneumoniae ERS050418 SC v1.2.4 2012-01-20T21:59:32.136 99.26 2124610 92.11 1313 2157 2024-02-05T17:56:23.000 2124610 84273 2124601 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900053645.1 type CSF 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FIVY00000000.1 2012-01-16T17:01:51Z GCA_900053645.1 haploid public B18107-sc-2011-08-23T15:08:04Z-1261837 89.18 0.47 51 2015-08-07T15:39:27 GCA_053203845.1 835145 47 7004_3#17 B18107-sc-2011-08-23T15:08:04Z-1261837 Malawi 7004_3#17 SAMEA1033570 1313 GCF_900053645.1 Generic.1.0 89.18 SRA GCF_900053645.1 category_na live 2018-03-09T09:54:18Z B18107 PRJEB2656 GCF_900053645.1-RS_2026_01_24 SC SC 51 1261837 2018-03-09T09:54:18Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIVY01 B18107 2012-01-16T17:01:51Z Prokka current 51 B18107-sc-2011-08-23T15:08:04Z-1261837 Generic Streptococcus_pneumoniae_samples_from_Malawi FIVY01 Contig SOURCE_DATABASE_GENBANK Malawi 2016-02-13 B18107 species_match 98.71 SAMEA1033570 10 Streptococcus pneumoniae 92.11 Streptococcus pneumoniae 1313 PRJEB2656 10 current na Best-placed reference protein set; GeneMarkS-2+ 84273 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 10B 10B species Homo sapiens 2024 Streptococcus pneumoniae Streptococcus pneumoniae ERS050418 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq v1.2.4 2012-01-20T21:59:32.136 99.26 2124610 92.11 1313 2249 2024-02-05T17:56:23.000 2124610 84273 2124601 CSF Homo sapiens Streptococcus pneumoniae Disease 176 EBI 100 GCA_053203845.1 GCF_900053645.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_900053645.1 type CSF 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FIVY00000000.1 2012-01-16T17:01:51Z GCF_900053645.1 haploid public B18107-sc-2011-08-23T15:08:04Z-1261837 89.18 0.47 51 2015-08-07T15:39:27 GCA_053203845.1 835145 49 7004_3#17 B18107-sc-2011-08-23T15:08:04Z-1261837 Malawi 7004_3#17 SAMEA1033570 1313 GCA_900053645.1 Generic.1.0 89.18 SRA GCA_900053645.1 category_na live 2018-03-09T09:54:18Z B18107 PRJEB2656 Annotation submitted by SC SC SC 51 1261837 2018-03-09T09:54:18Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIVY01 B18107 6.10 2012-01-16T17:01:51Z Prokka current 51 B18107-sc-2011-08-23T15:08:04Z-1261837 Generic Streptococcus_pneumoniae_samples_from_Malawi FIVY01 Contig SOURCE_DATABASE_REFSEQ Malawi 2016-02-13 B18107 species_match 98.71 SAMEA2383247 9 Streptococcus pneumoniae 92.3 Streptococcus pneumoniae 1313 PRJEB4909 11 current na 82411 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2099 Streptococcus pneumoniae Streptococcus pneumoniae ERS409572 SC 2006/2012 v1.2.4 2014-07-17T08:09:41.296 98.37 2111090 92.3 1313 2146 2024-02-06T06:52:33.000 2112507 73068 2111090 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900036675.1 type blood 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 15.1783 https://www.ncbi.nlm.nih.gov/nuccore/FENH00000000.1 2014-07-16T11:40:13Z GCA_900036675.1 haploid public 2120452_II-sc-1870499 88.8 0.31 54 2015-08-10T19:44:24 GCA_053203845.1 835403 47 12754_4#37 2120452_II-sc-1870499 Netherlands 12754_4#37 SAMEA2383247 1313 GCF_900036675.1 Generic.1.0 88.8 SRA GCF_900036675.1 category_na live 2018-03-09T10:42:35Z 2842STDY5753794 PRJEB4909 GCF_900036675.1-RS_2025_09_21 SC SC 48 1870499 2018-03-09T10:42:35Z 2014-07-16T00:00:00.000 2120452_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FENH01 2006/2012 2842STDY5753794 2014-07-16T11:40:13Z Prokka current 48 2120452_II-sc-1870499 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FENH01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753794 species_match 98.76 SAMEA2383247 9 Streptococcus pneumoniae 92.3 Streptococcus pneumoniae 1313 PRJEB4909 11 current na Best-placed reference protein set; GeneMarkS-2+ 82411 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 2013 Streptococcus pneumoniae Streptococcus pneumoniae ERS409572 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:41.296 98.37 2111090 92.3 1313 2231 2024-02-06T06:52:33.000 2112507 73068 2111090 blood Homo sapiens Streptococcus pneumoniae Disease 165 EBI 100 GCA_053203845.1 GCF_900036675.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900036675.1 type blood 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 15.1783 https://www.ncbi.nlm.nih.gov/nuccore/FENH00000000.1 2014-07-16T11:40:13Z GCF_900036675.1 haploid public 2120452_II-sc-1870499 88.8 0.31 54 2015-08-10T19:44:24 GCA_053203845.1 835403 53 12754_4#37 2120452_II-sc-1870499 Netherlands 12754_4#37 SAMEA2383247 1313 GCA_900036675.1 Generic.1.0 88.8 SRA GCA_900036675.1 category_na live 2018-03-09T10:42:35Z 2842STDY5753794 PRJEB4909 Annotation submitted by SC SC SC 48 1870499 2018-03-09T10:42:35Z 2014-07-16T00:00:00.000 2120452_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FENH01 2006/2012 2842STDY5753794 6.10 2014-07-16T11:40:13Z Prokka current 48 2120452_II-sc-1870499 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FENH01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753794 species_match 98.76 SAMEA1025199 10 Streptococcus pneumoniae 90.34 Streptococcus pneumoniae 1313 PRJEB2395 10 current na 65936 type Streptococcus pneumoniae 2015-07-18 10F 10F species Homo sapiens 2053 Streptococcus pneumoniae Streptococcus pneumoniae ERS020674 SC 2009-01-16 v1.2.4 2012-01-20T19:55:17.260 99.26 2083262 90.34 1313 2094 2024-02-05T16:33:14.000 2083582 65936 2083248 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001197055.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CROA00000000.1 2011-11-15T09:28:16Z GCA_001197055.1 haploid public SMRU1164-sc-2011-01-27-1061377 89.15 0.68 58 2015-07-28T08:11:28 GCA_001457635.1 821427 41 6755_5#12 SMRU1164-sc-2011-01-27-1061377 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025199 1313 GCF_001197055.1 Generic.1.0 89.15 SRA GCF_001197055.1 category_na live 2018-03-09T09:53:07Z SMRU1164 PRJEB2395 GCF_001197055.1-RS_2026_01_25 SC SC 57 2018-03-09T09:53:07Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CROA01 2009-01-16 SMRU1164 2011-11-15T09:28:16Z Prokka current 57 SMRU1164-sc-2011-01-27-1061377 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CROA01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1164 species_match 98.7 SAMEA1025199 10 Streptococcus pneumoniae 90.34 Streptococcus pneumoniae 1313 PRJEB2395 10 current na Best-placed reference protein set; GeneMarkS-2+ 65936 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 10F 10F species Homo sapiens 1988 Streptococcus pneumoniae Streptococcus pneumoniae ERS020674 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-01-16 v1.2.4 2012-01-20T19:55:17.260 99.26 2083262 90.34 1313 2215 2024-02-05T16:33:14.000 2083582 65936 2083248 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 184 EBI 100 GCA_001457635.1 GCF_001197055.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001197055.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CROA00000000.1 2011-11-15T09:28:16Z GCF_001197055.1 haploid public SMRU1164-sc-2011-01-27-1061377 89.15 0.68 58 2015-07-28T08:11:28 GCA_001457635.1 821427 43 6755_5#12 SMRU1164-sc-2011-01-27-1061377 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025199 1313 GCA_001197055.1 Generic.1.0 89.15 SRA GCA_001197055.1 category_na live 2018-03-09T09:53:07Z SMRU1164 PRJEB2395 Annotation submitted by SC SC SC 57 2018-03-09T09:53:07Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CROA01 2009-01-16 SMRU1164 6.10 2011-11-15T09:28:16Z Prokka current 57 SMRU1164-sc-2011-01-27-1061377 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CROA01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1164 species_match 98.7 SAMEA1024039 12 Streptococcus pneumoniae 87.5 Streptococcus pneumoniae 1313 PRJEB2357 12 current na 56786 type Streptococcus pneumoniae 2015-07-24 10B 10B species Homo sapiens 2158 Streptococcus pneumoniae Streptococcus pneumoniae ERS019573 SC 2008-05-29 v1.2.4 2012-01-20T19:45:41.723 99.24 2151478 87.5 1313 2201 2024-02-05T16:30:26.000 2151488 56786 2151456 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001335675.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 72.4281 https://www.ncbi.nlm.nih.gov/nuccore/CHNT00000000.1 2011-10-11T09:20:04Z GCA_001335675.1 haploid public SMRU415-sc-2011-01-27-1060604 89.96 1.15 70 2016-01-29T08:05:22 GCA_001679515.1 848342 43 6631_3#7 SMRU415-sc-2011-01-27-1060604 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024039 1313 GCF_001335675.1 Generic.1.0 89.96 SRA GCF_001335675.1 category_na live 2018-03-09T09:53:05Z SMRU415 PRJEB2357 GCF_001335675.1-RS_2026_02_04 SC SC 69 2018-03-09T09:53:05Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHNT01 2008-05-29 10B 2011-10-11T09:20:04Z Prokka current 69 SMRU415-sc-2011-01-27-1060604 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHNT01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU415 species_match 98.7 SAMEA1024039 12 Streptococcus pneumoniae 87.5 Streptococcus pneumoniae 1313 PRJEB2357 12 current na Best-placed reference protein set; GeneMarkS-2+ 56786 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-04 10B 10B species Homo sapiens 2083 Streptococcus pneumoniae Streptococcus pneumoniae ERS019573 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-05-29 v1.2.4 2012-01-20T19:45:41.723 99.24 2151478 87.5 1313 2320 2024-02-05T16:30:26.000 2151488 56786 2151456 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 191 EBI 100 GCA_001679515.1 GCF_001335675.1-RS_2026_02_04 SLX Streptococcus pneumoniae GCF_001335675.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 72.4281 https://www.ncbi.nlm.nih.gov/nuccore/CHNT00000000.1 2011-10-11T09:20:04Z GCF_001335675.1 haploid public SMRU415-sc-2011-01-27-1060604 89.96 1.15 70 2016-01-29T08:05:22 GCA_001679515.1 848342 46 6631_3#7 SMRU415-sc-2011-01-27-1060604 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024039 1313 GCA_001335675.1 Generic.1.0 89.96 SRA GCA_001335675.1 category_na live 2018-03-09T09:53:05Z SMRU415 PRJEB2357 Annotation submitted by SC SC SC 69 2018-03-09T09:53:05Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHNT01 2008-05-29 SMRU415 6.10 2011-10-11T09:20:04Z Prokka current 69 SMRU415-sc-2011-01-27-1060604 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHNT01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU415 species_match 98.7 SAMEA1028686 8 Streptococcus pneumoniae 87.11 Streptococcus pneumoniae 1313 PRJEB2479 10 current na 83451 type Streptococcus pneumoniae 2015-07-13 10B 10B species Homo sapiens 2149 Streptococcus pneumoniae Streptococcus pneumoniae ERS021968 SC 2010-02-23 v1.2.4 2012-01-20T20:10:10.220 99.06 2155939 87.11 1313 2190 2024-02-05T16:16:46.000 2155962 56458 2155918 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001134045.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CLPI00000000.1 2012-01-05T09:56:35Z GCA_001134045.1 haploid public SMRU2458-sc-2011-01-27-1062671 88.97 3.12 70 2015-07-28T08:12:34 GCA_001457635.1 850583 41 6949_3#10 SMRU2458-sc-2011-01-27-1062671 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028686 1313 GCF_001134045.1 Generic.1.0 88.97 SRA GCF_001134045.1 category_na live 2018-03-09T09:52:54Z SMRU2458 PRJEB2479 GCF_001134045.1-RS_2026_02_02 SC SC 68 2018-03-09T09:52:54Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLPI01 2010-02-23 SMRU2458 2012-01-05T09:56:35Z Prokka current 68 SMRU2458-sc-2011-01-27-1062671 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLPI01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2458 species_match 98.72 SAMEA1028686 8 Streptococcus pneumoniae 87.11 Streptococcus pneumoniae 1313 PRJEB2479 10 current na Best-placed reference protein set; GeneMarkS-2+ 83451 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-02 10B 10B species Homo sapiens 2085 Streptococcus pneumoniae Streptococcus pneumoniae ERS021968 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-02-23 v1.2.4 2012-01-20T20:10:10.220 99.06 2155939 87.11 1313 2308 2024-02-05T16:16:46.000 2155962 56458 2155918 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 179 EBI 100 GCA_001457635.1 GCF_001134045.1-RS_2026_02_02 SLX Streptococcus pneumoniae GCF_001134045.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CLPI00000000.1 2012-01-05T09:56:35Z GCF_001134045.1 haploid public SMRU2458-sc-2011-01-27-1062671 88.97 3.12 70 2015-07-28T08:12:34 GCA_001457635.1 850583 44 6949_3#10 SMRU2458-sc-2011-01-27-1062671 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028686 1313 GCA_001134045.1 Generic.1.0 88.97 SRA GCA_001134045.1 category_na live 2018-03-09T09:52:54Z SMRU2458 PRJEB2479 Annotation submitted by SC SC SC 68 2018-03-09T09:52:54Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLPI01 2010-02-23 SMRU2458 6.10 2012-01-05T09:56:35Z Prokka current 68 SMRU2458-sc-2011-01-27-1062671 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLPI01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2458 species_match 98.72 SAMEA1025824 14 Streptococcus pneumoniae 89.17 Streptococcus pneumoniae 1313 PRJEB2397 14 current na 54285 type Streptococcus pneumoniae 2015-07-13 10B 10B species Homo sapiens 2095 Streptococcus pneumoniae Streptococcus pneumoniae ERS021544 SC 2009-10-26 v1.2.4 2012-01-20T20:04:52.570 99.26 2111873 89.17 1313 2135 2024-02-06T09:04:28.000 2111873 54285 2111864 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001101425.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CLCQ00000000.1 2012-01-05T17:11:34Z GCA_001101425.1 haploid public SMRU2034-sc-2011-01-27-1062247 89.21 0.36 67 2015-07-28T08:12:21 GCA_001457635.1 832283 40 6899_4#18 SMRU2034-sc-2011-01-27-1062247 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025824 1313 GCF_001101425.1 Generic.1.0 89.21 SRA GCF_001101425.1 category_na live 2018-03-09T12:14:37Z SMRU2034 PRJEB2397 GCF_001101425.1-RS_2026_01_24 SC SC 67 2018-03-09T12:14:37Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLCQ01 2009-10-26 SMRU2034 2012-01-05T17:11:34Z Prokka current 67 SMRU2034-sc-2011-01-27-1062247 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLCQ01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2034 species_match 98.71 SAMEA1025824 14 Streptococcus pneumoniae 89.17 Streptococcus pneumoniae 1313 PRJEB2397 14 current na Best-placed reference protein set; GeneMarkS-2+ 54285 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 10B 10B species Homo sapiens 2025 Streptococcus pneumoniae Streptococcus pneumoniae ERS021544 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-10-26 v1.2.4 2012-01-20T20:04:52.570 99.26 2111873 89.17 1313 2245 2024-02-06T09:04:28.000 2111873 54285 2111864 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 178 EBI 100 GCA_001457635.1 GCF_001101425.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_001101425.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CLCQ00000000.1 2012-01-05T17:11:34Z GCF_001101425.1 haploid public SMRU2034-sc-2011-01-27-1062247 89.21 0.36 67 2015-07-28T08:12:21 GCA_001457635.1 832283 42 6899_4#18 SMRU2034-sc-2011-01-27-1062247 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025824 1313 GCA_001101425.1 Generic.1.0 89.21 SRA GCA_001101425.1 category_na live 2018-03-09T12:14:37Z SMRU2034 PRJEB2397 Annotation submitted by SC SC SC 67 2018-03-09T12:14:37Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLCQ01 2009-10-26 SMRU2034 6.10 2012-01-05T17:11:34Z Prokka current 67 SMRU2034-sc-2011-01-27-1062247 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLCQ01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2034 species_match 98.71 SAMEA1026120 14 Streptococcus pneumoniae 89.54 Streptococcus pneumoniae 1313 PRJEB2397 14 current na 53479 type Streptococcus pneumoniae 2015-07-13 10F 10F species Homo sapiens 2074 Streptococcus pneumoniae Streptococcus pneumoniae ERS021572 SC 2009-11-04 v1.2.4 2012-01-20T20:05:11.513 99.06 2099772 89.54 1313 2115 2024-02-06T09:03:02.000 2099797 53479 2099759 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001096425.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CLDQ00000000.1 2012-01-05T09:56:38Z GCA_001096425.1 haploid public SMRU2062-sc-2011-01-27-1062275 89.07 0.36 75 2015-07-28T08:12:23 GCA_001457635.1 828159 41 6899_5#22 SMRU2062-sc-2011-01-27-1062275 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026120 1313 GCF_001096425.1 Generic.1.0 89.07 SRA GCF_001096425.1 category_na live 2018-03-09T11:51:41Z SMRU2062 PRJEB2397 GCF_001096425.1-RS_2026_01_24 SC SC 74 2018-03-09T11:51:41Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLDQ01 2009-11-04 SMRU2062 2012-01-05T09:56:38Z Prokka current 74 SMRU2062-sc-2011-01-27-1062275 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLDQ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2062 species_match 98.72 SAMEA1026120 14 Streptococcus pneumoniae 89.54 Streptococcus pneumoniae 1313 PRJEB2397 14 current na Best-placed reference protein set; GeneMarkS-2+ 53479 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 10F 10F species Homo sapiens 2024 Streptococcus pneumoniae Streptococcus pneumoniae ERS021572 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-11-04 v1.2.4 2012-01-20T20:05:11.513 99.06 2099772 89.54 1313 2245 2024-02-06T09:03:02.000 2099797 53479 2099759 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 177 EBI 100 GCA_001457635.1 GCF_001096425.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_001096425.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CLDQ00000000.1 2012-01-05T09:56:38Z GCF_001096425.1 haploid public SMRU2062-sc-2011-01-27-1062275 89.07 0.36 75 2015-07-28T08:12:23 GCA_001457635.1 828159 44 6899_5#22 SMRU2062-sc-2011-01-27-1062275 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026120 1313 GCA_001096425.1 Generic.1.0 89.07 SRA GCA_001096425.1 category_na live 2018-03-09T11:51:41Z SMRU2062 PRJEB2397 Annotation submitted by SC SC SC 74 2018-03-09T11:51:41Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLDQ01 2009-11-04 SMRU2062 6.10 2012-01-05T09:56:38Z Prokka current 74 SMRU2062-sc-2011-01-27-1062275 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLDQ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2062 species_match 98.72 SAMEA1025905 12 Streptococcus pneumoniae 92.31 Streptococcus pneumoniae 1313 PRJEB2397 14 current na 53893 type Streptococcus pneumoniae 2015-07-13 10F 10F species Homo sapiens 2088 Streptococcus pneumoniae Streptococcus pneumoniae ERS021556 SC 2009-10-28 v1.2.4 2012-01-20T20:05:00.613 99.26 2109473 92.31 1313 2128 2024-02-06T09:04:43.000 2109599 53195 2109443 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001139165.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CLED00000000.1 2012-01-05T09:56:36Z GCA_001139165.1 haploid public SMRU2046-sc-2011-01-27-1062259 88.74 0.36 73 2015-07-28T08:12:22 GCA_053203845.1 831400 40 6899_5#6 SMRU2046-sc-2011-01-27-1062259 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025905 1313 GCF_001139165.1 Generic.1.0 88.74 SRA GCF_001139165.1 category_na live 2018-03-09T12:21:34Z SMRU2046 PRJEB2397 GCF_001139165.1-RS_2026_01_30 SC SC 69 2018-03-09T12:21:34Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLED01 2009-10-28 SMRU2046 2012-01-05T09:56:36Z Prokka current 69 SMRU2046-sc-2011-01-27-1062259 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLED01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2046 species_match 98.7 SAMEA1025905 12 Streptococcus pneumoniae 92.31 Streptococcus pneumoniae 1313 PRJEB2397 14 current na Best-placed reference protein set; GeneMarkS-2+ 53893 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-30 10F 10F species Homo sapiens 2013 Streptococcus pneumoniae Streptococcus pneumoniae ERS021556 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-10-28 v1.2.4 2012-01-20T20:05:00.613 99.26 2109473 92.31 1313 2241 2024-02-06T09:04:43.000 2109599 53195 2109443 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 186 EBI 100 GCA_053203845.1 GCF_001139165.1-RS_2026_01_30 SLX Streptococcus pneumoniae GCF_001139165.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CLED00000000.1 2012-01-05T09:56:36Z GCF_001139165.1 haploid public SMRU2046-sc-2011-01-27-1062259 88.74 0.36 73 2015-07-28T08:12:22 GCA_053203845.1 831400 42 6899_5#6 SMRU2046-sc-2011-01-27-1062259 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025905 1313 GCA_001139165.1 Generic.1.0 88.74 SRA GCA_001139165.1 category_na live 2018-03-09T12:21:34Z SMRU2046 PRJEB2397 Annotation submitted by SC SC SC 69 2018-03-09T12:21:34Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLED01 2009-10-28 SMRU2046 6.10 2012-01-05T09:56:36Z Prokka current 69 SMRU2046-sc-2011-01-27-1062259 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLED01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2046 species_match 98.7 SAMEA1028745 11 Streptococcus pneumoniae 88.17 Streptococcus pneumoniae 1313 PRJEB2479 11 current na 52569 type Streptococcus pneumoniae 2015-07-13 10B 10B species Homo sapiens 2178 Streptococcus pneumoniae Streptococcus pneumoniae ERS022210 SC 2010-05-14 v1.2.4 2012-04-15T02:39:51.266 99.26 2191440 88.17 1313 2218 2024-02-05T16:33:43.000 2191537 52569 2191427 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001152285.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CLMN00000000.1 2012-03-19T14:11:23Z GCA_001152285.1 haploid public SMRU2700-sc-2011-01-27-1062913 88.05 7.19 73 2015-07-28T08:13:26 GCA_053203845.1 865974 40 6938_7#12 SMRU2700-sc-2011-01-27-1062913 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028745 1313 GCF_001152285.1 Generic.1.0 88.05 SRA GCF_001152285.1 category_na live 2018-03-09T09:53:07Z SMRU2700 PRJEB2479 GCF_001152285.1-RS_2026_02_04 SC SC 72 2018-03-09T09:53:07Z 2012-03-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLMN01 2010-05-14 SMRU2700 2012-03-19T14:11:23Z Prokka current 72 SMRU2700-sc-2011-01-27-1062913 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLMN01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2700 species_match 98.76 SAMEA1028745 11 Streptococcus pneumoniae 88.17 Streptococcus pneumoniae 1313 PRJEB2479 11 current na Best-placed reference protein set; GeneMarkS-2+ 52569 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-04 10B 10B species Homo sapiens 2114 Streptococcus pneumoniae Streptococcus pneumoniae ERS022210 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-05-14 v1.2.4 2012-04-15T02:39:51.266 99.26 2191440 88.17 1313 2329 2024-02-05T16:33:43.000 2191537 52569 2191427 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 172 EBI 100 GCA_053203845.1 GCF_001152285.1-RS_2026_02_04 SLX Streptococcus pneumoniae GCF_001152285.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CLMN00000000.1 2012-03-19T14:11:23Z GCF_001152285.1 haploid public SMRU2700-sc-2011-01-27-1062913 88.05 7.19 73 2015-07-28T08:13:26 GCA_053203845.1 865974 43 6938_7#12 SMRU2700-sc-2011-01-27-1062913 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028745 1313 GCA_001152285.1 Generic.1.0 88.05 SRA GCA_001152285.1 category_na live 2018-03-09T09:53:07Z SMRU2700 PRJEB2479 Annotation submitted by SC SC SC 72 2018-03-09T09:53:07Z 2012-03-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLMN01 2010-05-14 SMRU2700 6.10 2012-03-19T14:11:23Z Prokka current 72 SMRU2700-sc-2011-01-27-1062913 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLMN01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2700 species_match 98.76 SAMEA1026827 8 Streptococcus pneumoniae 94.25 Streptococcus pneumoniae 1313 PRJEB2417 8 current na 90059 type Streptococcus pneumoniae 2017-06-26 11A 11A species Homo sapiens 1924 Streptococcus pneumoniae ERS023293 SC 2009-03-09 v1.2.4 2011-09-23T19:13:59.870 97.74 1983837 94.25 1313 1962 2017-06-24T15:44:03.000 1983837 90059 1983836 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900191455.1 type Nasophaynx 98.81 OK 39.5 Streptococcus pneumoniae 5.19173 https://www.ncbi.nlm.nih.gov/nuccore/FYQB00000000.1 2011-09-20 GCA_900191455.1 haploid ERS023293 85.2 0.31 40 2017-06-28T08:06:20 GCA_053203845.1 786903 38 6512_3#23 United Kingdom UoS3252-sc-2011-02-14-1078347; 6512_323 1313 GCF_900191455.1 Generic.1.0 85.2 SRA Sample Description GCF_900191455.1 category_na live 2017-06-22 UoS3252 PRJEB2417 GCF_900191455.1-RS_2025_09_04 SC 40 1078347 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYQB01 2009-03-09 UoS3252 Prokka current 40 ERS023293 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYQB01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-26 UoS3252 species_match 98.81 SAMEA1026827 8 Streptococcus pneumoniae 94.25 Streptococcus pneumoniae 1313 PRJEB2417 8 current na Best-placed reference protein set; GeneMarkS-2+ 90059 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 11A 11A species Homo sapiens 1809 Streptococcus pneumoniae ERS023293 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-09 v1.2.4 2011-09-23T19:13:59.870 97.74 1983837 94.25 1313 2012 2017-06-24T15:44:03.000 1983837 90059 1983836 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 163 EBI 100 GCA_053203845.1 GCF_900191455.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900191455.1 type Nasophaynx 98.81 OK 39.5 Streptococcus pneumoniae 5.19173 https://www.ncbi.nlm.nih.gov/nuccore/FYQB00000000.1 2011-09-20 GCF_900191455.1 haploid ERS023293 85.2 0.31 40 2017-06-28T08:06:20 GCA_053203845.1 786903 40 6512_3#23 United Kingdom UoS3252-sc-2011-02-14-1078347; 6512_323 1313 GCA_900191455.1 Generic.1.0 85.2 SRA Sample Description GCA_900191455.1 category_na live 2017-06-22 UoS3252 PRJEB2417 Annotation submitted by SC SC 40 1078347 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYQB01 2009-03-09 UoS3252 6.10 Prokka current 40 ERS023293 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYQB01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-26 UoS3252 species_match 98.81 SAMEA1026698 8 Streptococcus pneumoniae 93.3 Streptococcus pneumoniae 1313 PRJEB2417 8 current na 85835 type Streptococcus pneumoniae 2017-06-27 11A 11A species Homo sapiens 1972 Streptococcus pneumoniae ERS023311 SC 2009-03-20 v1.2.4 2011-09-23T19:14:06.853 98.45 2015915 93.3 1313 2018 2017-06-24T15:46:26.000 2015983 85282 2015914 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900191775.1 type Nasophaynx 98.75 OK 39.5 Streptococcus pneumoniae 17.1436 https://www.ncbi.nlm.nih.gov/nuccore/FYRA00000000.1 2011-09-20 GCA_900191775.1 haploid ERS023311 85.71 0.31 43 2017-06-28T08:06:22 GCA_053203845.1 800839 46 6512_4#17 United Kingdom UoS3301-sc-2011-02-14-1078365; 6512_417 1313 GCF_900191775.1 Generic.1.0 85.71 SRA Sample Description GCF_900191775.1 category_na live 2017-06-22 UoS3301 PRJEB2417 GCF_900191775.1-RS_2025_09_04 SC 42 1078365 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYRA01 2009-03-20 UoS3301 Prokka current 42 ERS023311 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYRA01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS3301 species_match 98.75 SAMEA1026698 8 Streptococcus pneumoniae 93.3 Streptococcus pneumoniae 1313 PRJEB2417 8 current na Best-placed reference protein set; GeneMarkS-2+ 85835 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 11A 11A species Homo sapiens 1881 Streptococcus pneumoniae ERS023311 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-20 v1.2.4 2011-09-23T19:14:06.853 98.45 2015915 93.3 1313 2088 2017-06-24T15:46:26.000 2015983 85282 2015914 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 159 EBI 100 GCA_053203845.1 GCF_900191775.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900191775.1 type Nasophaynx 98.75 OK 39.5 Streptococcus pneumoniae 17.1436 https://www.ncbi.nlm.nih.gov/nuccore/FYRA00000000.1 2011-09-20 GCF_900191775.1 haploid ERS023311 85.71 0.31 43 2017-06-28T08:06:22 GCA_053203845.1 800839 48 6512_4#17 United Kingdom UoS3301-sc-2011-02-14-1078365; 6512_417 1313 GCA_900191775.1 Generic.1.0 85.71 SRA Sample Description GCA_900191775.1 category_na live 2017-06-22 UoS3301 PRJEB2417 Annotation submitted by SC SC 42 1078365 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYRA01 2009-03-20 UoS3301 6.10 Prokka current 42 ERS023311 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYRA01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS3301 species_match 98.75 SAMEA1025432 8 Streptococcus pneumoniae 90.54 Streptococcus pneumoniae 1313 PRJEB2395 8 current na 79821 type Streptococcus pneumoniae 2015-07-13 10F 10F species Homo sapiens 2056 Streptococcus pneumoniae Streptococcus pneumoniae ERS020847 SC 2009-03-16 v1.2.4 2012-01-20T19:57:11.190 99.24 2083440 90.54 1313 2099 2024-02-06T09:03:57.000 2083450 79821 2083431 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001083725.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 72.4281 https://www.ncbi.nlm.nih.gov/nuccore/CLAT00000000.1 2011-12-13T09:59:02Z GCA_001083725.1 haploid public SMRU1337-sc-2011-01-27-1061550 89.36 0.62 49 2015-07-28T08:12:15 GCA_001457635.1 821663 43 6841_7#17 SMRU1337-sc-2011-01-27-1061550 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025432 1313 GCF_001083725.1 Generic.1.0 89.36 SRA GCF_001083725.1 category_na live 2018-03-09T12:05:03Z SMRU1337 PRJEB2395 GCF_001083725.1-RS_2026_01_25 SC SC 48 2018-03-09T12:05:03Z 2011-12-13T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLAT01 2009-03-16 SMRU1337 2011-12-13T09:59:02Z Prokka current 48 SMRU1337-sc-2011-01-27-1061550 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLAT01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU1337 species_match 98.7 SAMEA1025432 8 Streptococcus pneumoniae 90.54 Streptococcus pneumoniae 1313 PRJEB2395 8 current na Best-placed reference protein set; GeneMarkS-2+ 79821 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 10F 10F species Homo sapiens 1979 Streptococcus pneumoniae Streptococcus pneumoniae ERS020847 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-16 v1.2.4 2012-01-20T19:57:11.190 99.24 2083440 90.54 1313 2209 2024-02-06T09:03:57.000 2083450 79821 2083431 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 183 EBI 100 GCA_001457635.1 GCF_001083725.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001083725.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 72.4281 https://www.ncbi.nlm.nih.gov/nuccore/CLAT00000000.1 2011-12-13T09:59:02Z GCF_001083725.1 haploid public SMRU1337-sc-2011-01-27-1061550 89.36 0.62 49 2015-07-28T08:12:15 GCA_001457635.1 821663 47 6841_7#17 SMRU1337-sc-2011-01-27-1061550 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025432 1313 GCA_001083725.1 Generic.1.0 89.36 SRA GCA_001083725.1 category_na live 2018-03-09T12:05:03Z SMRU1337 PRJEB2395 Annotation submitted by SC SC SC 48 2018-03-09T12:05:03Z 2011-12-13T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLAT01 2009-03-16 SMRU1337 6.10 2011-12-13T09:59:02Z Prokka current 48 SMRU1337-sc-2011-01-27-1061550 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLAT01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU1337 species_match 98.7 SAMEA1463267 8 Streptococcus pneumoniae 94.34 Streptococcus pneumoniae 1313 PRJEB2632 8 current na 77111 type Streptococcus pneumoniae 2015-07-29 11A 11A species Homo sapiens 1929 Streptococcus pneumoniae Streptococcus pneumoniae ERS070045 SC 2007 v1.2.4 2012-06-06T09:06:37.410 99.15 1994428 94.34 1313 1960 2024-02-05T18:09:03.000 F1G5R 1994428 77111 1994428 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001171025.2 type nasopharynx 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CODX00000000.2 2012-05-28T10:19:33Z GCA_001171025.2 haploid public LE4111-sc-2011-11-08T10:07:56Z-1298413 85.74 0.31 93 2015-09-10T08:20:50 F1G5R GCA_053203845.1 791783 31 7622_4#34 LE4111-sc-2011-11-08T10:07:56Z-1298413 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463267 1313 GCF_001171025.1 Generic.1.0 85.74 SRA GCF_001171025.1 category_na live 2018-03-09T09:54:33Z LE4111 PRJEB2632 GCF_001171025.1-RS_2025_09_15 SC SC 93 F1G5R 2018-03-09T09:54:33Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CODX02 2007 LE4111 2012-05-28T10:19:33Z Velvet current 93 LE4111-sc-2011-11-08T10:07:56Z-1298413 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CODX02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 LE4111 species_match 98.8 SAMEA1463267 8 Streptococcus pneumoniae 94.34 Streptococcus pneumoniae 1313 PRJEB2632 8 current na Best-placed reference protein set; GeneMarkS-2+ 77111 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-15 11A 11A species Homo sapiens 1862 Streptococcus pneumoniae Streptococcus pneumoniae ERS070045 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:37.410 99.15 1994428 94.34 1313 2069 2024-02-05T18:09:03.000 F1G5R 1994428 77111 1994428 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 153 EBI 100 GCA_053203845.1 GCF_001171025.1-RS_2025_09_15 SLX Streptococcus pneumoniae GCF_001171025.1 type nasopharynx 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CODX00000000.2 2012-05-28T10:19:33Z GCF_001171025.1 haploid public LE4111-sc-2011-11-08T10:07:56Z-1298413 85.74 0.31 93 2015-09-10T08:20:50 F1G5R GCA_053203845.1 791783 54 7622_4#34 LE4111-sc-2011-11-08T10:07:56Z-1298413 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463267 1313 GCA_001171025.2 Generic.1.0 85.74 SRA GCA_001171025.2 category_na live 2018-03-09T09:54:33Z LE4111 PRJEB2632 Annotation submitted by SC SC SC 93 F1G5R 2018-03-09T09:54:33Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CODX02 2007 LE4111 6.10 2012-05-28T10:19:33Z Velvet current 93 LE4111-sc-2011-11-08T10:07:56Z-1298413 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CODX02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 LE4111 species_match 98.8 SAMEA1029330 9 Streptococcus pneumoniae 90.41 Streptococcus pneumoniae 1313 PRJEB2480 9 current na 75906 type Streptococcus pneumoniae 2015-07-28 10F 10F species Homo sapiens 2057 Streptococcus pneumoniae Streptococcus pneumoniae ERS022479 SC 2010-08-17 v1.2.4 2012-02-09T20:48:24.123 99.26 2087189 90.41 1313 2101 2024-02-06T09:04:27.000 2087211 75906 2087167 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001347615.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CFBL00000000.1 2012-02-07T17:03:02Z GCA_001347615.1 haploid public SMRU2969-sc-2011-01-27-1063182 89.39 0.36 53 2015-07-28T08:13:16 GCA_001457635.1 823127 44 7038_5#17 SMRU2969-sc-2011-01-27-1063182 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029330 1313 GCF_001347615.1 Generic.1.0 89.39 SRA GCF_001347615.1 category_na live 2018-03-09T12:14:25Z SMRU2969 PRJEB2480 GCF_001347615.1-RS_2026_02_01 SC SC 51 2018-03-09T12:14:25Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFBL01 2010-08-17 SMRU2969 2012-02-07T17:03:02Z Prokka current 51 SMRU2969-sc-2011-01-27-1063182 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFBL01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-01 SMRU2969 species_match 98.7 SAMEA1029330 9 Streptococcus pneumoniae 90.41 Streptococcus pneumoniae 1313 PRJEB2480 9 current na Best-placed reference protein set; GeneMarkS-2+ 75906 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 10F 10F species Homo sapiens 1991 Streptococcus pneumoniae Streptococcus pneumoniae ERS022479 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-08-17 v1.2.4 2012-02-09T20:48:24.123 99.26 2087189 90.41 1313 2229 2024-02-06T09:04:27.000 2087211 75906 2087167 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 192 EBI 100 GCA_001457635.1 GCF_001347615.1-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_001347615.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CFBL00000000.1 2012-02-07T17:03:02Z GCF_001347615.1 haploid public SMRU2969-sc-2011-01-27-1063182 89.39 0.36 53 2015-07-28T08:13:16 GCA_001457635.1 823127 46 7038_5#17 SMRU2969-sc-2011-01-27-1063182 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029330 1313 GCA_001347615.1 Generic.1.0 89.39 SRA GCA_001347615.1 category_na live 2018-03-09T12:14:25Z SMRU2969 PRJEB2480 Annotation submitted by SC SC SC 51 2018-03-09T12:14:25Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFBL01 2010-08-17 SMRU2969 6.10 2012-02-07T17:03:02Z Prokka current 51 SMRU2969-sc-2011-01-27-1063182 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFBL01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-01 SMRU2969 species_match 98.7 SAMEA1029341 11 Streptococcus pneumoniae 91.66 Streptococcus pneumoniae 1313 PRJEB2480 11 current na 73774 type Streptococcus pneumoniae 2015-07-14 11A 11A species Homo sapiens 2016 Streptococcus pneumoniae Streptococcus pneumoniae ERS022478 SC 2010-08-16 v1.2.4 2012-02-09T20:48:23.220 98.47 2066553 91.66 1313 2056 2024-02-06T09:02:30.000 2066553 73774 2066547 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001136285.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 17.6045 https://www.ncbi.nlm.nih.gov/nuccore/CMGX00000000.1 2012-02-07T09:15:21Z GCA_001136285.1 haploid public SMRU2968-sc-2011-01-27-1063181 86.32 2.57 53 2015-07-28T08:13:15 GCA_053203845.1 820192 40 7038_5#16 SMRU2968-sc-2011-01-27-1063181 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029341 1313 GCF_001136285.1 Generic.1.0 86.32 SRA GCF_001136285.1 category_na live 2018-03-09T11:44:53Z SMRU2968 PRJEB2480 GCF_001136285.1-RS_2026_01_14 SC SC 53 2018-03-09T11:44:53Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMGX01 2010-08-16 SMRU2968 2012-02-07T09:15:21Z Prokka current 53 SMRU2968-sc-2011-01-27-1063181 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMGX01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2968 species_match 98.76 SAMEA1029341 11 Streptococcus pneumoniae 91.66 Streptococcus pneumoniae 1313 PRJEB2480 11 current na Best-placed reference protein set; GeneMarkS-2+ 73774 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-14 11A 11A species Homo sapiens 1964 Streptococcus pneumoniae Streptococcus pneumoniae ERS022478 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-08-16 v1.2.4 2012-02-09T20:48:23.220 98.47 2066553 91.66 1313 2164 2024-02-06T09:02:30.000 2066553 73774 2066547 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 158 EBI 100 GCA_053203845.1 GCF_001136285.1-RS_2026_01_14 SLX Streptococcus pneumoniae GCF_001136285.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 17.6045 https://www.ncbi.nlm.nih.gov/nuccore/CMGX00000000.1 2012-02-07T09:15:21Z GCF_001136285.1 haploid public SMRU2968-sc-2011-01-27-1063181 86.32 2.57 53 2015-07-28T08:13:15 GCA_053203845.1 820192 42 7038_5#16 SMRU2968-sc-2011-01-27-1063181 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029341 1313 GCA_001136285.1 Generic.1.0 86.32 SRA GCA_001136285.1 category_na live 2018-03-09T11:44:53Z SMRU2968 PRJEB2480 Annotation submitted by SC SC SC 53 2018-03-09T11:44:53Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMGX01 2010-08-16 SMRU2968 6.10 2012-02-07T09:15:21Z Prokka current 53 SMRU2968-sc-2011-01-27-1063181 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMGX01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2968 species_match 98.76 SAMEA1463116 8 Streptococcus pneumoniae 93.05 Streptococcus pneumoniae 1313 PRJEB2632 8 current na 70414 type Streptococcus pneumoniae 2015-07-29 11A 11A species Homo sapiens 1980 Streptococcus pneumoniae Streptococcus pneumoniae ERS070193 SC 2007 v1.2.4 2012-05-15T12:05:35.933 99.15 2030786 93.05 1313 2011 2024-02-05T18:17:17.000 28I7H 2030786 70414 2030786 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001153205.2 type nasopharynx 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CNZW00000000.2 2012-05-09T10:03:17Z GCA_001153205.2 haploid public PT8072-sc-2011-11-08T10:09:47Z-1298561 86.11 0.31 104 2015-09-10T08:20:42 28I7H GCA_053203845.1 806605 31 7553_5#86 PT8072-sc-2011-11-08T10:09:47Z-1298561 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463116 1313 GCF_001153205.1 Generic.1.0 86.11 SRA GCF_001153205.1 category_na live 2018-03-09T09:54:43Z PT8072 PRJEB2632 GCF_001153205.1-RS_2025_09_15 SC SC 104 28I7H 2018-03-09T09:54:43Z 2012-05-09T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNZW02 2007 PT8072 2012-05-09T10:03:17Z Velvet current 104 PT8072-sc-2011-11-08T10:09:47Z-1298561 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNZW02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 PT8072 species_match 98.8 SAMEA1463116 8 Streptococcus pneumoniae 93.05 Streptococcus pneumoniae 1313 PRJEB2632 8 current na Best-placed reference protein set; GeneMarkS-2+ 70414 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-15 11A 11A species Homo sapiens 1919 Streptococcus pneumoniae Streptococcus pneumoniae ERS070193 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-05-15T12:05:35.933 99.15 2030786 93.05 1313 2130 2024-02-05T18:17:17.000 28I7H 2030786 70414 2030786 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 156 EBI 100 GCA_053203845.1 GCF_001153205.1-RS_2025_09_15 SLX Streptococcus pneumoniae GCF_001153205.1 type nasopharynx 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CNZW00000000.2 2012-05-09T10:03:17Z GCF_001153205.1 haploid public PT8072-sc-2011-11-08T10:09:47Z-1298561 86.11 0.31 104 2015-09-10T08:20:42 28I7H GCA_053203845.1 806605 55 7553_5#86 PT8072-sc-2011-11-08T10:09:47Z-1298561 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463116 1313 GCA_001153205.2 Generic.1.0 86.11 SRA GCA_001153205.2 category_na live 2018-03-09T09:54:43Z PT8072 PRJEB2632 Annotation submitted by SC SC SC 104 28I7H 2018-03-09T09:54:43Z 2012-05-09T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNZW02 2007 PT8072 6.10 2012-05-09T10:03:17Z Velvet current 104 PT8072-sc-2011-11-08T10:09:47Z-1298561 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNZW02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 PT8072 species_match 98.8 SAMEA1029217 9 Streptococcus pneumoniae 89.52 Streptococcus pneumoniae 1313 PRJEB2480 9 current na 68605 type Streptococcus pneumoniae 2015-07-14 10F 10F species Homo sapiens 2078 Streptococcus pneumoniae Streptococcus pneumoniae ERS022480 SC 2010-08-17 v1.2.4 2012-02-09T20:48:25.056 99.26 2095148 89.52 1313 2121 2024-02-05T16:20:08.000 2095159 68605 2095124 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001137105.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CMHG00000000.1 2012-02-07T17:03:03Z GCA_001137105.1 haploid public SMRU2970-sc-2011-01-27-1063183 89.62 0.31 53 2015-07-28T08:13:16 GCA_001679515.1 826272 43 7038_5#18 SMRU2970-sc-2011-01-27-1063183 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029217 1313 GCF_001137105.1 Generic.1.0 89.62 SRA GCF_001137105.1 category_na live 2018-03-09T09:52:56Z SMRU2970 PRJEB2480 GCF_001137105.1-RS_2026_02_01 SC SC 52 2018-03-09T09:52:56Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMHG01 2010-08-17 SMRU2970 2012-02-07T17:03:03Z Prokka current 52 SMRU2970-sc-2011-01-27-1063183 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMHG01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2970 species_match 98.72 SAMEA1029217 9 Streptococcus pneumoniae 89.52 Streptococcus pneumoniae 1313 PRJEB2480 9 current na Best-placed reference protein set; GeneMarkS-2+ 68605 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 10F 10F species Homo sapiens 1988 Streptococcus pneumoniae Streptococcus pneumoniae ERS022480 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-08-17 v1.2.4 2012-02-09T20:48:25.056 99.26 2095148 89.52 1313 2232 2024-02-05T16:20:08.000 2095159 68605 2095124 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 198 EBI 100 GCA_001679515.1 GCF_001137105.1-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_001137105.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CMHG00000000.1 2012-02-07T17:03:03Z GCF_001137105.1 haploid public SMRU2970-sc-2011-01-27-1063183 89.62 0.31 53 2015-07-28T08:13:16 GCA_001679515.1 826272 46 7038_5#18 SMRU2970-sc-2011-01-27-1063183 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029217 1313 GCA_001137105.1 Generic.1.0 89.62 SRA GCA_001137105.1 category_na live 2018-03-09T09:52:56Z SMRU2970 PRJEB2480 Annotation submitted by SC SC SC 52 2018-03-09T09:52:56Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMHG01 2010-08-17 SMRU2970 6.10 2012-02-07T17:03:03Z Prokka current 52 SMRU2970-sc-2011-01-27-1063183 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMHG01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2970 species_match 98.72 SAMEA1025845 8 Streptococcus pneumoniae 89.04 Streptococcus pneumoniae 1313 PRJEB2397 9 current na 70454 type Streptococcus pneumoniae 2015-07-13 10B 10B species Homo sapiens 2116 Streptococcus pneumoniae Streptococcus pneumoniae ERS021404 SC 2009-09-07 v1.2.4 2012-01-20T20:03:09.306 99.06 2117591 89.04 1313 2156 2024-02-05T16:24:11.000 2117642 67305 2117576 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001165565.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CKUL00000000.1 2011-12-05T16:07:37Z GCA_001165565.1 haploid public SMRU1894-sc-2011-01-27-1062107 89.32 0.36 61 2015-07-28T08:12:07 GCA_001457635.1 834703 40 6823_2#22 SMRU1894-sc-2011-01-27-1062107 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025845 1313 GCF_001165565.1 Generic.1.0 89.32 SRA GCF_001165565.1 category_na live 2018-03-09T09:53:00Z SMRU1894 PRJEB2397 GCF_001165565.1-RS_2026_01_30 SC SC 58 2018-03-09T09:53:00Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKUL01 2009-09-07 SMRU1894 2011-12-05T16:07:37Z Prokka current 58 SMRU1894-sc-2011-01-27-1062107 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKUL01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU1894 species_match 98.71 SAMEA1025845 8 Streptococcus pneumoniae 89.04 Streptococcus pneumoniae 1313 PRJEB2397 9 current na Best-placed reference protein set; GeneMarkS-2+ 70454 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-30 10B 10B species Homo sapiens 2037 Streptococcus pneumoniae Streptococcus pneumoniae ERS021404 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-09-07 v1.2.4 2012-01-20T20:03:09.306 99.06 2117591 89.04 1313 2266 2024-02-05T16:24:11.000 2117642 67305 2117576 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 186 EBI 100 GCA_001457635.1 GCF_001165565.1-RS_2026_01_30 SLX Streptococcus pneumoniae GCF_001165565.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CKUL00000000.1 2011-12-05T16:07:37Z GCF_001165565.1 haploid public SMRU1894-sc-2011-01-27-1062107 89.32 0.36 61 2015-07-28T08:12:07 GCA_001457635.1 834703 43 6823_2#22 SMRU1894-sc-2011-01-27-1062107 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025845 1313 GCA_001165565.1 Generic.1.0 89.32 SRA GCA_001165565.1 category_na live 2018-03-09T09:53:00Z SMRU1894 PRJEB2397 Annotation submitted by SC SC SC 58 2018-03-09T09:53:00Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKUL01 2009-09-07 SMRU1894 6.10 2011-12-05T16:07:37Z Prokka current 58 SMRU1894-sc-2011-01-27-1062107 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKUL01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU1894 species_match 98.71 SAMEA1463049 12 Streptococcus pneumoniae 94.05 Streptococcus pneumoniae 1313 PRJEB2632 12 current na 63950 type Streptococcus pneumoniae 2015-07-29 11A 11A species Homo sapiens 1943 Streptococcus pneumoniae Streptococcus pneumoniae ERS070105 SC 2007 v1.2.4 2012-06-06T09:06:40.246 99.1 2012467 94.05 1313 1974 2024-02-06T09:02:05.000 KYDZM 2012467 63950 2012467 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001093145.2 type nasopharynx 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/COFW00000000.2 2012-05-28T10:19:32Z GCA_001093145.2 haploid public ND6103-sc-2011-11-08T10:08:41Z-1298473 86.25 0.31 112 2015-09-10T08:20:53 KYDZM GCA_053203845.1 797529 31 7622_5#94 ND6103-sc-2011-11-08T10:08:41Z-1298473 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463049 1313 GCF_001093145.1 Generic.1.0 86.25 SRA GCF_001093145.1 category_na live 2018-03-09T11:40:11Z ND6103 PRJEB2632 GCF_001093145.1-RS_2025_09_15 SC SC 112 KYDZM 2018-03-09T11:40:11Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COFW02 2007 ND6103 2012-05-28T10:19:32Z Velvet current 112 ND6103-sc-2011-11-08T10:08:41Z-1298473 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COFW02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 ND6103 species_match 98.84 SAMEA1463049 12 Streptococcus pneumoniae 94.05 Streptococcus pneumoniae 1313 PRJEB2632 12 current na Best-placed reference protein set; GeneMarkS-2+ 63950 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-15 11A 11A species Homo sapiens 1880 Streptococcus pneumoniae Streptococcus pneumoniae ERS070105 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:40.246 99.1 2012467 94.05 1313 2090 2024-02-06T09:02:05.000 KYDZM 2012467 63950 2012467 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 158 EBI 100 GCA_053203845.1 GCF_001093145.1-RS_2025_09_15 SLX Streptococcus pneumoniae GCF_001093145.1 type nasopharynx 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/COFW00000000.2 2012-05-28T10:19:32Z GCF_001093145.1 haploid public ND6103-sc-2011-11-08T10:08:41Z-1298473 86.25 0.31 112 2015-09-10T08:20:53 KYDZM GCA_053203845.1 797529 52 7622_5#94 ND6103-sc-2011-11-08T10:08:41Z-1298473 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463049 1313 GCA_001093145.2 Generic.1.0 86.25 SRA GCA_001093145.2 category_na live 2018-03-09T11:40:11Z ND6103 PRJEB2632 Annotation submitted by SC SC SC 112 KYDZM 2018-03-09T11:40:11Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COFW02 2007 ND6103 6.10 2012-05-28T10:19:32Z Velvet current 112 ND6103-sc-2011-11-08T10:08:41Z-1298473 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COFW02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 ND6103 species_match 98.84 SAMEA2203781 5 Streptococcus pneumoniae 93.52 Streptococcus pneumoniae 1313 PRJEB3084 5 current na 205907 type Streptococcus pneumoniae 2019-05-14 12F 12F species Homo sapiens 2057 Streptococcus pneumoniae Streptococcus pneumoniae ERS356285 SC 2009 v1.2.4 2014-02-28T18:05:41.213 99.31 2079130 93.52 1313 2104 Streptococcus pneumoniae 2024-02-06T15:54:47.000 2081012 136186 2079129 blood Homo sapiens Streptococcus pneumoniae Bacteremia ST3776 EBI 100 GCA_053203845.1 Annotation submitted by SC Streptococcus pneumoniae GCA_900033815.3 type blood 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FFRD00000000.2 2014-02-18T09:20:03Z GCA_900033815.3 haploid public 2009215863-sc-2013-10-09T11:49:16Z-1712370 88.61 0.62 34 2015-08-10T19:05:33 GCA_053203845.1 821171 47 11658_2#95 2009215863-sc-2013-10-09T11:49:16Z-1712370 USA 11658_2#95 SAMEA2203781 1313 GCF_900033815.3 Generic.1.0 88.61 SRA GCF_900033815.3 category_na live 2019-04-18T15:39:18Z GPSC55 PRJEB3084 GCF_900033815.3-RS_2025_12_30 SC SC 26 1712370 2019-04-18T15:39:18Z 2014-02-18T00:00:00.000 2009215863 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFRD02 2009 2245STDY5608920 2014-02-18T09:20:03Z current 26 2009215863-sc-2013-10-09T11:49:16Z-1712370 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFRD02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-14 GPSC55 species_match 98.76 SAMEA2203781 5 Streptococcus pneumoniae 93.52 Streptococcus pneumoniae 1313 PRJEB3084 5 current na Best-placed reference protein set; GeneMarkS-2+ 205907 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-30 12F 12F species Homo sapiens 1958 Streptococcus pneumoniae Streptococcus pneumoniae ERS356285 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-02-28T18:05:41.213 99.31 2079130 93.52 1313 2179 Streptococcus pneumoniae 2024-02-06T15:54:47.000 2081012 136186 2079129 blood Homo sapiens Streptococcus pneumoniae Bacteremia 169 ST3776 EBI 100 GCA_053203845.1 GCF_900033815.3-RS_2025_12_30 Streptococcus pneumoniae GCF_900033815.3 type blood 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FFRD00000000.2 2014-02-18T09:20:03Z GCF_900033815.3 haploid public 2009215863-sc-2013-10-09T11:49:16Z-1712370 88.61 0.62 34 2015-08-10T19:05:33 GCA_053203845.1 821171 52 11658_2#95 2009215863-sc-2013-10-09T11:49:16Z-1712370 USA 11658_2#95 SAMEA2203781 1313 GCA_900033815.3 Generic.1.0 88.61 SRA GCA_900033815.3 category_na live 2019-04-18T15:39:18Z GPSC55 PRJEB3084 Annotation submitted by SC SC SC 26 1712370 2019-04-18T15:39:18Z 2014-02-18T00:00:00.000 2009215863 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFRD02 2009 GPSC55 substr. ST3776 6.10 2014-02-18T09:20:03Z current 26 2009215863-sc-2013-10-09T11:49:16Z-1712370 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFRD02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-14 GPSC55 species_match 98.76 SAMEA1029202 8 Streptococcus pneumoniae 90.97 Streptococcus pneumoniae 1313 PRJEB2480 8 current na 94272 type Streptococcus pneumoniae 2015-07-14 11A 11A species Homo sapiens 2033 Streptococcus pneumoniae Streptococcus pneumoniae ERS022511 SC 2010-09-04 v1.2.4 2012-02-09T20:48:51.856 98.47 2082381 90.97 1313 2090 2024-02-05T16:20:07.000 2083255 94272 2082361 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001099085.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 17.6045 https://www.ncbi.nlm.nih.gov/nuccore/CMII00000000.1 2012-02-07T17:03:03Z GCA_001099085.1 haploid public SMRU3001-sc-2011-01-27-1063214 86.33 2.44 45 2015-07-28T08:13:17 GCA_053203845.1 826992 57 7038_7#1 SMRU3001-sc-2011-01-27-1063214 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029202 1313 GCF_001099085.1 Generic.1.0 86.33 SRA GCF_001099085.1 category_na live 2018-03-09T09:52:56Z SMRU3001 PRJEB2480 GCF_001099085.1-RS_2026_01_18 SC SC 43 2018-03-09T09:52:56Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMII01 2010-09-04 SMRU3001 2012-02-07T17:03:03Z Prokka current 43 SMRU3001-sc-2011-01-27-1063214 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMII01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU3001 species_match 98.76 SAMEA1029202 8 Streptococcus pneumoniae 90.97 Streptococcus pneumoniae 1313 PRJEB2480 8 current na Best-placed reference protein set; GeneMarkS-2+ 94272 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 11A 11A species Homo sapiens 1954 Streptococcus pneumoniae Streptococcus pneumoniae ERS022511 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-09-04 v1.2.4 2012-02-09T20:48:51.856 98.47 2082381 90.97 1313 2174 2024-02-05T16:20:07.000 2083255 94272 2082361 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 164 EBI 100 GCA_053203845.1 GCF_001099085.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001099085.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 17.6045 https://www.ncbi.nlm.nih.gov/nuccore/CMII00000000.1 2012-02-07T17:03:03Z GCF_001099085.1 haploid public SMRU3001-sc-2011-01-27-1063214 86.33 2.44 45 2015-07-28T08:13:17 GCA_053203845.1 826992 56 7038_7#1 SMRU3001-sc-2011-01-27-1063214 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029202 1313 GCA_001099085.1 Generic.1.0 86.33 SRA GCA_001099085.1 category_na live 2018-03-09T09:52:56Z SMRU3001 PRJEB2480 Annotation submitted by SC SC SC 43 2018-03-09T09:52:56Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMII01 2010-09-04 SMRU3001 6.10 2012-02-07T17:03:03Z Prokka current 43 SMRU3001-sc-2011-01-27-1063214 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMII01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU3001 species_match 98.76 SAMEA2238948 6 Streptococcus pneumoniae 95.22 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 92563 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1968 Streptococcus pneumoniae Streptococcus pneumoniae ERS367760 SC 2006/2012 v1.2.4 2014-05-07T08:35:08.636 99.26 2002498 95.22 1313 2015 2024-02-06T05:18:25.000 2003718 84891 2002496 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900028795.1 type CSF 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FCXF00000000.1 2014-03-18T09:35:29Z GCA_900028795.1 haploid public 2120014-sc-2013-11-05T12:05:22Z-1750313 86.89 0.31 36 2015-08-10T19:24:34 GCA_053203845.1 794106 47 11861_3#95 2120014-sc-2013-11-05T12:05:22Z-1750313 Netherlands 11861_3#95 SAMEA2238948 1313 GCF_900028795.1 Generic.1.0 86.89 SRA GCF_900028795.1 category_na live 2018-03-09T10:29:16Z 2842STDY5644324 PRJEB4909 GCF_900028795.1-RS_2025_09_21 SC SC 31 1750313 2018-03-09T10:29:16Z 2014-03-18T00:00:00.000 2120014 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCXF01 2006/2012 2842STDY5644324 2014-03-18T09:35:29Z Prokka current 31 2120014-sc-2013-11-05T12:05:22Z-1750313 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCXF01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644324 species_match 98.77 SAMEA2238948 6 Streptococcus pneumoniae 95.22 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 92563 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1874 Streptococcus pneumoniae Streptococcus pneumoniae ERS367760 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:08.636 99.26 2002498 95.22 1313 2092 2024-02-06T05:18:25.000 2003718 84891 2002496 CSF Homo sapiens Streptococcus pneumoniae Disease 166 EBI 100 GCA_053203845.1 GCF_900028795.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900028795.1 type CSF 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FCXF00000000.1 2014-03-18T09:35:29Z GCF_900028795.1 haploid public 2120014-sc-2013-11-05T12:05:22Z-1750313 86.89 0.31 36 2015-08-10T19:24:34 GCA_053203845.1 794106 52 11861_3#95 2120014-sc-2013-11-05T12:05:22Z-1750313 Netherlands 11861_3#95 SAMEA2238948 1313 GCA_900028795.1 Generic.1.0 86.89 SRA GCA_900028795.1 category_na live 2018-03-09T10:29:16Z 2842STDY5644324 PRJEB4909 Annotation submitted by SC SC SC 31 1750313 2018-03-09T10:29:16Z 2014-03-18T00:00:00.000 2120014 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCXF01 2006/2012 2842STDY5644324 6.10 2014-03-18T09:35:29Z Prokka current 31 2120014-sc-2013-11-05T12:05:22Z-1750313 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCXF01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644324 species_match 98.77 SAMEA2238996 7 Streptococcus pneumoniae 95.36 Streptococcus pneumoniae 1313 PRJEB4909 9 current na 93265 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1946 Streptococcus pneumoniae Streptococcus pneumoniae ERS367808 SC 2006/2012 v1.2.4 2014-05-07T08:35:13.120 98.95 1994707 95.36 1313 1993 2024-02-06T05:17:58.000 1999538 80881 1994705 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900023685.1 type CSF 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 44.8115 https://www.ncbi.nlm.nih.gov/nuccore/FCRZ00000000.1 2014-03-18T09:35:30Z GCA_900023685.1 haploid public 981842-sc-2013-11-05T12:06:13Z-1750361 86.68 0.98 59 2015-08-10T19:24:36 GCA_053203845.1 791178 47 11861_4#50 981842-sc-2013-11-05T12:06:13Z-1750361 Netherlands 11861_4#50 SAMEA2238996 1313 GCF_900023685.1 Generic.1.0 86.68 SRA GCF_900023685.1 category_na live 2018-03-09T10:29:20Z 2842STDY5644372 PRJEB4909 GCF_900023685.1-RS_2025_09_21 SC SC 41 1750361 2018-03-09T10:29:20Z 2014-03-18T00:00:00.000 981842 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCRZ01 2006/2012 2842STDY5644372 2014-03-18T09:35:30Z Prokka current 41 981842-sc-2013-11-05T12:06:13Z-1750361 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCRZ01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644372 species_match 98.76 SAMEA2238996 7 Streptococcus pneumoniae 95.36 Streptococcus pneumoniae 1313 PRJEB4909 9 current na Best-placed reference protein set; GeneMarkS-2+ 93265 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1875 Streptococcus pneumoniae Streptococcus pneumoniae ERS367808 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:13.120 98.95 1994707 95.36 1313 2092 2024-02-06T05:17:58.000 1999538 80881 1994705 CSF Homo sapiens Streptococcus pneumoniae Disease 165 EBI 100 GCA_053203845.1 GCF_900023685.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900023685.1 type CSF 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 44.8115 https://www.ncbi.nlm.nih.gov/nuccore/FCRZ00000000.1 2014-03-18T09:35:30Z GCF_900023685.1 haploid public 981842-sc-2013-11-05T12:06:13Z-1750361 86.68 0.98 59 2015-08-10T19:24:36 GCA_053203845.1 791178 52 11861_4#50 981842-sc-2013-11-05T12:06:13Z-1750361 Netherlands 11861_4#50 SAMEA2238996 1313 GCA_900023685.1 Generic.1.0 86.68 SRA GCA_900023685.1 category_na live 2018-03-09T10:29:20Z 2842STDY5644372 PRJEB4909 Annotation submitted by SC SC SC 41 1750361 2018-03-09T10:29:20Z 2014-03-18T00:00:00.000 981842 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCRZ01 2006/2012 2842STDY5644372 6.10 2014-03-18T09:35:30Z Prokka current 41 981842-sc-2013-11-05T12:06:13Z-1750361 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCRZ01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644372 species_match 98.76 SAMEA1024636 10 Streptococcus pneumoniae 94.62 Streptococcus pneumoniae 1313 PRJEB2393 10 current na 62705 type Streptococcus pneumoniae 2015-07-17 11A 11A species Homo sapiens 2001 Streptococcus pneumoniae Streptococcus pneumoniae ERS020578 SC 2008-12-19 v1.2.4 2012-01-20T19:54:13.256 98.72 2023788 94.62 1313 2039 2024-02-05T16:21:58.000 2023905 62705 2023780 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001192395.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 27.7191 https://www.ncbi.nlm.nih.gov/nuccore/CRDH00000000.1 2011-11-02T10:11:59Z GCA_001192395.1 haploid public SMRU1068-sc-2011-01-27-1061281 87.26 0.42 58 2015-07-28T08:11:12 GCA_053203845.1 802587 38 6731_4#12 SMRU1068-sc-2011-01-27-1061281 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024636 1313 GCF_001192395.1 Generic.1.0 87.26 SRA GCF_001192395.1 category_na live 2018-03-09T09:52:58Z SMRU1068 PRJEB2393 GCF_001192395.1-RS_2026_01_20 SC SC 51 2018-03-09T09:52:58Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRDH01 2008-12-19 SMRU1068 2011-11-02T10:11:59Z Prokka current 51 SMRU1068-sc-2011-01-27-1061281 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRDH01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1068 species_match 98.73 SAMEA1024636 10 Streptococcus pneumoniae 94.62 Streptococcus pneumoniae 1313 PRJEB2393 10 current na Best-placed reference protein set; GeneMarkS-2+ 62705 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-20 11A 11A species Homo sapiens 1922 Streptococcus pneumoniae Streptococcus pneumoniae ERS020578 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-12-19 v1.2.4 2012-01-20T19:54:13.256 98.72 2023788 94.62 1313 2133 2024-02-05T16:21:58.000 2023905 62705 2023780 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 171 EBI 100 GCA_053203845.1 GCF_001192395.1-RS_2026_01_20 SLX Streptococcus pneumoniae GCF_001192395.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 27.7191 https://www.ncbi.nlm.nih.gov/nuccore/CRDH00000000.1 2011-11-02T10:11:59Z GCF_001192395.1 haploid public SMRU1068-sc-2011-01-27-1061281 87.26 0.42 58 2015-07-28T08:11:12 GCA_053203845.1 802587 40 6731_4#12 SMRU1068-sc-2011-01-27-1061281 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024636 1313 GCA_001192395.1 Generic.1.0 87.26 SRA GCA_001192395.1 category_na live 2018-03-09T09:52:58Z SMRU1068 PRJEB2393 Annotation submitted by SC SC SC 51 2018-03-09T09:52:58Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRDH01 2008-12-19 SMRU1068 6.10 2011-11-02T10:11:59Z Prokka current 51 SMRU1068-sc-2011-01-27-1061281 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRDH01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1068 species_match 98.73 SAMEA1025503 11 Streptococcus pneumoniae 91.82 Streptococcus pneumoniae 1313 PRJEB2395 11 current na 71282 type Streptococcus pneumoniae 2015-07-18 11A 11A species Homo sapiens 2040 Streptococcus pneumoniae Streptococcus pneumoniae ERS020723 SC 2009-02-04 v1.2.4 2012-01-20T19:55:48.840 98.73 2090387 91.82 1313 2079 2024-02-06T09:03:51.000 2090412 61466 2090372 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001198535.1 type nasopharynx 98.7 OK 40.0 Streptococcus pneumoniae 28.0456 https://www.ncbi.nlm.nih.gov/nuccore/CRFF00000000.1 2011-11-15T17:01:01Z GCA_001198535.1 haploid public SMRU1213-sc-2011-01-27-1061426 87.47 4.19 53 2015-07-28T08:11:31 GCA_053203845.1 831112 39 6736_4#13 SMRU1213-sc-2011-01-27-1061426 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025503 1313 GCF_001198535.1 Generic.1.0 87.47 SRA GCF_001198535.1 category_na live 2018-03-09T12:03:48Z SMRU1213 PRJEB2395 GCF_001198535.1-RS_2026_01_14 SC SC 52 2018-03-09T12:03:48Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRFF01 2009-02-04 SMRU1213 2011-11-15T17:01:01Z Prokka current 52 SMRU1213-sc-2011-01-27-1061426 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRFF01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1213 species_match 98.7 SAMEA1025503 11 Streptococcus pneumoniae 91.82 Streptococcus pneumoniae 1313 PRJEB2395 11 current na Best-placed reference protein set; GeneMarkS-2+ 71282 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-14 11A 11A species Homo sapiens 1979 Streptococcus pneumoniae Streptococcus pneumoniae ERS020723 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-02-04 v1.2.4 2012-01-20T19:55:48.840 98.73 2090387 91.82 1313 2182 2024-02-06T09:03:51.000 2090412 61466 2090372 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 161 EBI 100 GCA_053203845.1 GCF_001198535.1-RS_2026_01_14 SLX Streptococcus pneumoniae GCF_001198535.1 type nasopharynx 98.7 OK 40.0 Streptococcus pneumoniae 28.0456 https://www.ncbi.nlm.nih.gov/nuccore/CRFF00000000.1 2011-11-15T17:01:01Z GCF_001198535.1 haploid public SMRU1213-sc-2011-01-27-1061426 87.47 4.19 53 2015-07-28T08:11:31 GCA_053203845.1 831112 42 6736_4#13 SMRU1213-sc-2011-01-27-1061426 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025503 1313 GCA_001198535.1 Generic.1.0 87.47 SRA GCA_001198535.1 category_na live 2018-03-09T12:03:48Z SMRU1213 PRJEB2395 Annotation submitted by SC SC SC 52 2018-03-09T12:03:48Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRFF01 2009-02-04 SMRU1213 6.10 2011-11-15T17:01:01Z Prokka current 52 SMRU1213-sc-2011-01-27-1061426 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRFF01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1213 species_match 98.7 SAMEA974638 13 Streptococcus pneumoniae 92.2 Streptococcus pneumoniae 1313 PRJEB2357 13 current na 52585 type Streptococcus pneumoniae 2015-07-11 11A 11A species Homo sapiens 2025 Streptococcus pneumoniae Streptococcus pneumoniae ERS019233 SC 2008-02-04 v1.2.4 2011-07-31T19:55:38.980 98.78 2051655 92.2 1313 2061 2024-02-05T16:34:26.000 2051704 52585 2051635 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001152305.1 type nasopharynx 98.77 OK 39.5 Streptococcus pneumoniae 31.4577 https://www.ncbi.nlm.nih.gov/nuccore/CKBU00000000.1 2011-07-27T10:09:44Z GCA_001152305.1 haploid public SMRU75-sc-2011-01-27-1026500 86.21 0.52 77 2016-01-29T08:05:16 GCA_053203845.1 812715 36 6259_8#3 SMRU75-sc-2011-01-27-1026500 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974638 1313 GCF_001152305.1 Generic.1.0 86.21 SRA GCF_001152305.1 category_na live 2018-03-09T09:53:07Z SMRU75 PRJEB2357 GCF_001152305.1-RS_2026_01_14 SC SC 74 2018-03-09T09:53:07Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKBU01 2008-02-04 11A 2011-07-27T10:09:44Z Prokka current 74 SMRU75-sc-2011-01-27-1026500 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKBU01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU75 species_match 98.77 SAMEA974638 13 Streptococcus pneumoniae 92.2 Streptococcus pneumoniae 1313 PRJEB2357 13 current na Best-placed reference protein set; GeneMarkS-2+ 52585 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-14 11A 11A species Homo sapiens 1955 Streptococcus pneumoniae Streptococcus pneumoniae ERS019233 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-02-04 v1.2.4 2011-07-31T19:55:38.980 98.78 2051655 92.2 1313 2155 2024-02-05T16:34:26.000 2051704 52585 2051635 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 162 EBI 100 GCA_053203845.1 GCF_001152305.1-RS_2026_01_14 SLX Streptococcus pneumoniae GCF_001152305.1 type nasopharynx 98.77 OK 39.5 Streptococcus pneumoniae 31.4577 https://www.ncbi.nlm.nih.gov/nuccore/CKBU00000000.1 2011-07-27T10:09:44Z GCF_001152305.1 haploid public SMRU75-sc-2011-01-27-1026500 86.21 0.52 77 2016-01-29T08:05:16 GCA_053203845.1 812715 38 6259_8#3 SMRU75-sc-2011-01-27-1026500 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974638 1313 GCA_001152305.1 Generic.1.0 86.21 SRA GCA_001152305.1 category_na live 2018-03-09T09:53:07Z SMRU75 PRJEB2357 Annotation submitted by SC SC SC 74 2018-03-09T09:53:07Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKBU01 2008-02-04 SMRU75 6.10 2011-07-27T10:09:44Z Prokka current 74 SMRU75-sc-2011-01-27-1026500 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKBU01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU75 species_match 98.77 SAMEA1023675 16 Streptococcus pneumoniae 92.91 Streptococcus pneumoniae 1313 PRJEB2357 16 current na 45210 type Streptococcus pneumoniae 2015-07-23 11A 11A species Homo sapiens 2041 Streptococcus pneumoniae Streptococcus pneumoniae ERS019712 SC 2008-07-11 v1.2.4 2012-01-20T19:46:56.886 98.78 2065440 92.91 1313 2080 2024-02-06T09:04:52.000 2065440 45210 2065438 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_000942775.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 31.4577 https://www.ncbi.nlm.nih.gov/nuccore/CDQB00000000.1 2011-11-07T13:55:52Z GCA_000942775.1 haploid public SMRU554-sc-2011-01-27-1060743 87.45 0.36 110 2015-07-28T08:11:17 GCA_053203845.1 818647 39 6714_8#2 SMRU554-sc-2011-01-27-1060743 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1023675 1313 GCF_000942775.1 Generic.1.0 87.45 SRA GCF_000942775.1 category_na live 2018-03-09T12:26:06Z SMRU554 PRJEB2357 GCF_000942775.1-RS_2026_01_22 SC SC 110 2018-03-09T12:26:06Z 2011-11-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CDQB01 2008-07-11 SMRU554 2011-11-07T13:55:52Z Prokka current 110 SMRU554-sc-2011-01-27-1060743 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CDQB01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-01-29 SMRU554 species_match 98.75 SAMEA1023675 16 Streptococcus pneumoniae 92.91 Streptococcus pneumoniae 1313 PRJEB2357 16 current na Best-placed reference protein set; GeneMarkS-2+ 45210 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 11A 11A species Homo sapiens 1981 Streptococcus pneumoniae Streptococcus pneumoniae ERS019712 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-07-11 v1.2.4 2012-01-20T19:46:56.886 98.78 2065440 92.91 1313 2195 2024-02-06T09:04:52.000 2065440 45210 2065438 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 172 EBI 100 GCA_053203845.1 GCF_000942775.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_000942775.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 31.4577 https://www.ncbi.nlm.nih.gov/nuccore/CDQB00000000.1 2011-11-07T13:55:52Z GCF_000942775.1 haploid public SMRU554-sc-2011-01-27-1060743 87.45 0.36 110 2015-07-28T08:11:17 GCA_053203845.1 818647 42 6714_8#2 SMRU554-sc-2011-01-27-1060743 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1023675 1313 GCA_000942775.1 Generic.1.0 87.45 SRA GCA_000942775.1 category_na live 2018-03-09T12:26:06Z SMRU554 PRJEB2357 Annotation submitted by SC SC SC 110 2018-03-09T12:26:06Z 2011-11-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CDQB01 2008-07-11 SMRU554 6.10 2011-11-07T13:55:52Z Prokka current 110 SMRU554-sc-2011-01-27-1060743 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CDQB01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-01-29 SMRU554 species_match 98.75 SAMEA1025132 14 Streptococcus pneumoniae 90.57 Streptococcus pneumoniae 1313 PRJEB2395 14 current na 44364 type Streptococcus pneumoniae 2015-07-18 12F 12F species Homo sapiens 2029 Streptococcus pneumoniae Streptococcus pneumoniae ERS021000 SC 2009-05-04 v1.2.4 2012-01-20T19:58:53.890 98.84 2086234 90.57 1313 2073 2024-02-05T23:08:09.000 2086290 44364 2086220 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001195405.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/CRJJ00000000.1 2011-11-15T09:28:17Z GCA_001195405.1 haploid public SMRU1490-sc-2011-01-27-1061703 89.52 0.83 80 2015-07-28T08:11:42 GCA_001457635.1 824039 44 6753_2#2 SMRU1490-sc-2011-01-27-1061703 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025132 1313 GCF_001195405.1 Generic.1.0 89.52 SRA GCF_001195405.1 category_na live 2018-03-09T10:03:32Z SMRU1490 PRJEB2395 GCF_001195405.1-RS_2026_01_31 SC SC 76 2018-03-09T10:03:32Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRJJ01 2009-05-04 SMRU1490 2011-11-15T09:28:17Z Prokka current 76 SMRU1490-sc-2011-01-27-1061703 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRJJ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1490 species_match 98.8 SAMEA1025132 14 Streptococcus pneumoniae 90.57 Streptococcus pneumoniae 1313 PRJEB2395 14 current na Best-placed reference protein set; GeneMarkS-2+ 44364 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 12F 12F species Homo sapiens 1944 Streptococcus pneumoniae Streptococcus pneumoniae ERS021000 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-05-04 v1.2.4 2012-01-20T19:58:53.890 98.84 2086234 90.57 1313 2179 2024-02-05T23:08:09.000 2086290 44364 2086220 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 189 EBI 100 GCA_001457635.1 GCF_001195405.1-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_001195405.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/CRJJ00000000.1 2011-11-15T09:28:17Z GCF_001195405.1 haploid public SMRU1490-sc-2011-01-27-1061703 89.52 0.83 80 2015-07-28T08:11:42 GCA_001457635.1 824039 46 6753_2#2 SMRU1490-sc-2011-01-27-1061703 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025132 1313 GCA_001195405.1 Generic.1.0 89.52 SRA GCA_001195405.1 category_na live 2018-03-09T10:03:32Z SMRU1490 PRJEB2395 Annotation submitted by SC SC SC 76 2018-03-09T10:03:32Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRJJ01 2009-05-04 SMRU1490 6.10 2011-11-15T09:28:17Z Prokka current 76 SMRU1490-sc-2011-01-27-1061703 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRJJ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1490 species_match 98.8 SAMEA3353955 2 Streptococcus pneumoniae 94.12 Streptococcus pneumoniae PRJEB3084 2 na 455860 type Streptococcus pneumoniae 2019-05-10 12F 12F Homo sapiens 1964 Streptococcus pneumoniae Streptococcus pneumoniae ERS708310 SC 2014 2015-10-14T08:11:06.726 2006760 94.12 1313 2017 Streptococcus pneumoniae 2024-02-06T15:57:31.000 2006760 455860 2006760 CSF Homo sapiens Meningitis from large multi-isolate project ST2416 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901236945.1 type CSF 98.84 ERC000011 OK 40.0 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAOEA000000000.1 2015-10-13T13:59:25Z GCA_901236945.1 haploid public GPS_ZA_2911-sc-2278561 86.07 15 2018-03-10T20:10:18 GCA_053203845.1 798281 53 17175_8#29 GPS_ZA_2911-sc-2278561 South Africa 17175_8#29 SAMEA3353955 1313 Generic.1.0 86.07 SRA category_na live 2019-04-18T15:56:59Z GPSC56 PRJEB3084 SC SC 15 2278561 2019-04-18T15:56:59Z 2015-10-13T00:00:00.000 43405 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAOEA01 2014 GPSC56 substr. ST2416 2015-10-13T13:59:25Z Prokka current 15 GPS_ZA_2911-sc-2278561 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAOEA01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC56 species_match 98.84 SAMEA3714043 3 Streptococcus pneumoniae 89.12 Streptococcus pneumoniae PRJEB3084 3 na 324138 type Streptococcus pneumoniae 2019-05-16 11B 11B Homo sapiens 2136 Streptococcus pneumoniae Streptococcus pneumoniae ERS1021192 SC 2009 2016-06-15T09:07:22.413 2146748 89.12 1313 2189 Streptococcus pneumoniae 2024-02-06T15:51:39.000 2146804 324138 2146739 NP swab Homo sapiens Carriage from large multi-isolate project ST12402 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901290695.1 type NP swab 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWBZ000000000.1 2016-06-14T13:33:01Z GCA_901290695.1 haploid public 40f376b0-41bd-11e5-a83d-3c4a9275d6c6 87.18 27 2016-06-15T10:10:09.000 GCA_053203845.1 847515 53 19341_3#78 40f376b0-41bd-11e5-a83d-3c4a9275d6c6 China 19341_3#78 SAMEA3714043 1313 Generic.1.0 87.18 SRA category_na live 2019-04-18T15:32:19Z GPSC555 PRJEB3084 SC SC 26 2377866 2019-04-18T15:32:19Z 2016-06-14T00:00:00.000 GPS_HK_399 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWBZ01 2009 GPSC555 substr. ST12402 2016-06-14T13:33:01Z Prokka current 26 40f376b0-41bd-11e5-a83d-3c4a9275d6c6 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWBZ01 Scaffold SOURCE_DATABASE_GENBANK China 2019-05-16 GPSC555 species_match 98.75 SAMEA2204008 4 Streptococcus pneumoniae 90.73 Streptococcus pneumoniae 1313 PRJEB3084 4 current na 203199 type Streptococcus pneumoniae 2019-05-14 15BC 15BC species Homo sapiens 2078 Streptococcus pneumoniae Streptococcus pneumoniae ERS356519 SC 2009 v1.2.4 2014-05-06T18:11:24.866 98.91 2092787 90.73 1313 2124 Streptococcus pneumoniae 2024-02-06T15:54:52.000 2094380 196210 2092785 blood Homo sapiens Streptococcus pneumoniae Fever unspecified ST3280 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900055975.2 type blood 98.6 ERC000011 OK 39.5 Streptococcus pneumoniae 41.0153 https://www.ncbi.nlm.nih.gov/nuccore/FHIC00000000.2 2014-03-04T09:16:33Z GCA_900055975.2 haploid public 2009215804-sc-2013-10-09T11:53:32Z-1712599 86.53 0.31 28 2015-08-10T19:14:52 GCA_053203845.1 826581 46 11822_8#79 2009215804-sc-2013-10-09T11:53:32Z-1712599 USA 11822_8#79 SAMEA2204008 1313 GCF_900055975.2 Generic.1.0 86.53 SRA GCF_900055975.2 category_na live 2019-04-18T15:39:19Z GPSC132 PRJEB3084 GCF_900055975.2-RS_2025_12_30 SC SC 21 1712599 2019-04-18T15:39:19Z 2014-03-04T00:00:00.000 2009215804 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHIC02 2009 2245STDY5609149 2014-03-04T09:16:33Z Prokka current 21 2009215804-sc-2013-10-09T11:53:32Z-1712599 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHIC02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-14 GPSC132 species_match 98.6 SAMEA2204008 4 Streptococcus pneumoniae 90.73 Streptococcus pneumoniae 1313 PRJEB3084 4 current na Best-placed reference protein set; GeneMarkS-2+ 203199 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-30 15BC 15BC species Homo sapiens 1961 Streptococcus pneumoniae Streptococcus pneumoniae ERS356519 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-05-06T18:11:24.866 98.91 2092787 90.73 1313 2178 Streptococcus pneumoniae 2024-02-06T15:54:52.000 2094380 196210 2092785 blood Homo sapiens Streptococcus pneumoniae Fever unspecified 166 ST3280 EBI 100 GCA_053203845.1 GCF_900055975.2-RS_2025_12_30 SLX Streptococcus pneumoniae GCF_900055975.2 type blood 98.6 ERC000011 OK 39.5 Streptococcus pneumoniae 41.0153 https://www.ncbi.nlm.nih.gov/nuccore/FHIC00000000.2 2014-03-04T09:16:33Z GCF_900055975.2 haploid public 2009215804-sc-2013-10-09T11:53:32Z-1712599 86.53 0.31 28 2015-08-10T19:14:52 GCA_053203845.1 826581 51 11822_8#79 2009215804-sc-2013-10-09T11:53:32Z-1712599 USA 11822_8#79 SAMEA2204008 1313 GCA_900055975.2 Generic.1.0 86.53 SRA GCA_900055975.2 category_na live 2019-04-18T15:39:19Z GPSC132 PRJEB3084 Annotation submitted by SC SC SC 21 1712599 2019-04-18T15:39:19Z 2014-03-04T00:00:00.000 2009215804 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHIC02 2009 GPSC132 substr. ST3280 6.10 2014-03-04T09:16:33Z Prokka current 21 2009215804-sc-2013-10-09T11:53:32Z-1712599 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHIC02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-14 GPSC132 species_match 98.6 SAMEA1025271 6 Streptococcus pneumoniae 94.48 Streptococcus pneumoniae 1313 PRJEB2395 6 current na 101883 type Streptococcus pneumoniae 2015-07-09 15A 15A species Homo sapiens 1977 Streptococcus pneumoniae Streptococcus pneumoniae ERS020892 SC 2009-03-26 v1.2.4 2012-01-20T19:57:40.990 99.31 2015485 94.48 1313 2017 2024-02-05T16:25:03.000 2015541 101883 2015467 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001166385.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CIMM00000000.1 2011-11-15T17:01:01Z GCA_001166385.1 haploid public SMRU1382-sc-2011-01-27-1061595 86.78 0.52 45 2015-07-28T08:11:39 GCA_053203845.1 797725 40 6710_7#14 SMRU1382-sc-2011-01-27-1061595 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025271 1313 GCF_001166385.1 Generic.1.0 86.78 SRA GCF_001166385.1 category_na live 2018-03-09T09:53:01Z SMRU1382 PRJEB2395 GCF_001166385.1-RS_2026_02_01 SC SC 44 2018-03-09T09:53:01Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIMM01 2009-03-26 SMRU1382 2011-11-15T17:01:01Z Prokka current 44 SMRU1382-sc-2011-01-27-1061595 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CIMM01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-09 SMRU1382 species_match 98.75 SAMEA1025271 6 Streptococcus pneumoniae 94.48 Streptococcus pneumoniae 1313 PRJEB2395 6 current na Best-placed reference protein set; GeneMarkS-2+ 101883 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 15A 15A species Homo sapiens 1900 Streptococcus pneumoniae Streptococcus pneumoniae ERS020892 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-26 v1.2.4 2012-01-20T19:57:40.990 99.31 2015485 94.48 1313 2086 2024-02-05T16:25:03.000 2015541 101883 2015467 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 144 EBI 100 GCA_053203845.1 GCF_001166385.1-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_001166385.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CIMM00000000.1 2011-11-15T17:01:01Z GCF_001166385.1 haploid public SMRU1382-sc-2011-01-27-1061595 86.78 0.52 45 2015-07-28T08:11:39 GCA_053203845.1 797725 42 6710_7#14 SMRU1382-sc-2011-01-27-1061595 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025271 1313 GCA_001166385.1 Generic.1.0 86.78 SRA GCA_001166385.1 category_na live 2018-03-09T09:53:01Z SMRU1382 PRJEB2395 Annotation submitted by SC SC SC 44 2018-03-09T09:53:01Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIMM01 2009-03-26 SMRU1382 6.10 2011-11-15T17:01:01Z Prokka current 44 SMRU1382-sc-2011-01-27-1061595 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CIMM01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-09 SMRU1382 species_match 98.75 SAMEA1463278 8 Streptococcus pneumoniae 89.3 Streptococcus pneumoniae 1313 PRJEB2632 8 current na 93521 type Streptococcus pneumoniae 2015-07-29 15A 15A species Homo sapiens 2067 Streptococcus pneumoniae Streptococcus pneumoniae ERS069952 SC 2007 v1.2.4 2012-06-06T09:06:32.750 99.25 2111140 89.3 1313 2098 2024-02-05T18:06:47.000 KRHYA 2111140 93521 2111140 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001129765.2 type nasopharynx 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/COBE00000000.2 2012-05-28T10:19:35Z GCA_001129765.2 haploid public BR1109-sc-2011-11-08T10:06:48Z-1298320 85.91 0.33 141 2015-09-10T08:20:47 KRHYA GCA_053203845.1 833970 31 7622_2#37 BR1109-sc-2011-11-08T10:06:48Z-1298320 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463278 1313 GCF_001129765.1 Generic.1.0 85.91 SRA GCF_001129765.1 category_na live 2018-03-09T09:54:30Z BR1109 PRJEB2632 GCF_001129765.1-RS_2025_09_29 SC SC 141 KRHYA 2018-03-09T09:54:30Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COBE02 2007 BR1109 2012-05-28T10:19:35Z Velvet current 141 BR1109-sc-2011-11-08T10:06:48Z-1298320 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COBE02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 BR1109 species_match 98.8 SAMEA1463278 8 Streptococcus pneumoniae 89.3 Streptococcus pneumoniae 1313 PRJEB2632 8 current na Best-placed reference protein set; GeneMarkS-2+ 93521 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-29 15A 15A species Homo sapiens 1987 Streptococcus pneumoniae Streptococcus pneumoniae ERS069952 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:32.750 99.25 2111140 89.3 1313 2218 2024-02-05T18:06:47.000 KRHYA 2111140 93521 2111140 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 181 EBI 100 GCA_053203845.1 GCF_001129765.1-RS_2025_09_29 SLX Streptococcus pneumoniae GCF_001129765.1 type nasopharynx 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/COBE00000000.2 2012-05-28T10:19:35Z GCF_001129765.1 haploid public BR1109-sc-2011-11-08T10:06:48Z-1298320 85.91 0.33 141 2015-09-10T08:20:47 KRHYA GCA_053203845.1 833970 50 7622_2#37 BR1109-sc-2011-11-08T10:06:48Z-1298320 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463278 1313 GCA_001129765.2 Generic.1.0 85.91 SRA GCA_001129765.2 category_na live 2018-03-09T09:54:30Z BR1109 PRJEB2632 Annotation submitted by SC SC SC 141 KRHYA 2018-03-09T09:54:30Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COBE02 2007 BR1109 6.10 2012-05-28T10:19:35Z Velvet current 141 BR1109-sc-2011-11-08T10:06:48Z-1298320 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COBE02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 BR1109 species_match 98.8 SAMEA1025794 9 Streptococcus pneumoniae 94.81 Streptococcus pneumoniae 1313 PRJEB2397 9 current na 90797 type Streptococcus pneumoniae 2015-07-13 15A 15A species Homo sapiens 1936 Streptococcus pneumoniae Streptococcus pneumoniae ERS021396 SC 2009-09-04 v1.2.4 2012-01-20T20:03:03.636 99.31 1973728 94.81 1313 1976 2024-02-06T09:04:42.000 1973728 90797 1973707 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001108165.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKTS00000000.1 2011-12-05T16:07:33Z GCA_001108165.1 haploid public SMRU1886-sc-2011-01-27-1062099 88.64 1.88 46 2015-07-28T08:12:06 GCA_001457635.1 784466 40 6823_2#14 SMRU1886-sc-2011-01-27-1062099 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025794 1313 GCF_001108165.1 Generic.1.0 88.64 SRA GCF_001108165.1 category_na live 2018-03-09T12:20:58Z SMRU1886 PRJEB2397 GCF_001108165.1-RS_2026_02_01 SC SC 46 2018-03-09T12:20:58Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKTS01 2009-09-04 SMRU1886 2011-12-05T16:07:33Z Prokka current 46 SMRU1886-sc-2011-01-27-1062099 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKTS01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU1886 species_match 98.71 SAMEA1025794 9 Streptococcus pneumoniae 94.81 Streptococcus pneumoniae 1313 PRJEB2397 9 current na Best-placed reference protein set; GeneMarkS-2+ 90797 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 15A 15A species Homo sapiens 1854 Streptococcus pneumoniae Streptococcus pneumoniae ERS021396 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-09-04 v1.2.4 2012-01-20T20:03:03.636 99.31 1973728 94.81 1313 2040 2024-02-06T09:04:42.000 1973728 90797 1973707 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 144 EBI 100 GCA_001457635.1 GCF_001108165.1-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_001108165.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKTS00000000.1 2011-12-05T16:07:33Z GCF_001108165.1 haploid public SMRU1886-sc-2011-01-27-1062099 88.64 1.88 46 2015-07-28T08:12:06 GCA_001457635.1 784466 42 6823_2#14 SMRU1886-sc-2011-01-27-1062099 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025794 1313 GCA_001108165.1 Generic.1.0 88.64 SRA GCA_001108165.1 category_na live 2018-03-09T12:20:58Z SMRU1886 PRJEB2397 Annotation submitted by SC SC SC 46 2018-03-09T12:20:58Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKTS01 2009-09-04 SMRU1886 6.10 2011-12-05T16:07:33Z Prokka current 46 SMRU1886-sc-2011-01-27-1062099 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKTS01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU1886 species_match 98.71 SAMEA1025774 9 Streptococcus pneumoniae 91.91 Streptococcus pneumoniae 1313 PRJEB2397 9 current na 82797 type Streptococcus pneumoniae 2015-07-13 15A 15A species Homo sapiens 2020 Streptococcus pneumoniae Streptococcus pneumoniae ERS021596 SC 2009-09-24 v1.2.4 2012-01-20T20:05:29.073 99.31 2040249 91.91 1313 2061 2024-02-05T16:26:56.000 2040299 82797 2040232 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001107685.1 type nasopharynx 98.79 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLEQ00000000.1 2012-01-05T09:56:37Z GCA_001107685.1 haploid public SMRU2086-sc-2011-01-27-1062299 85.46 0.62 47 2015-07-28T08:12:24 GCA_053203845.1 807392 41 6899_6#22 SMRU2086-sc-2011-01-27-1062299 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025774 1313 GCF_001107685.1 Generic.1.0 85.46 SRA GCF_001107685.1 category_na live 2018-03-09T09:53:02Z SMRU2086 PRJEB2397 GCF_001107685.1-RS_2026_01_06 SC SC 45 2018-03-09T09:53:02Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLEQ01 2009-09-24 SMRU2086 2012-01-05T09:56:37Z Prokka current 45 SMRU2086-sc-2011-01-27-1062299 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLEQ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2086 species_match 98.79 SAMEA1025774 9 Streptococcus pneumoniae 91.91 Streptococcus pneumoniae 1313 PRJEB2397 9 current na Best-placed reference protein set; GeneMarkS-2+ 82797 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-06 15A 15A species Homo sapiens 1933 Streptococcus pneumoniae Streptococcus pneumoniae ERS021596 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-09-24 v1.2.4 2012-01-20T20:05:29.073 99.31 2040249 91.91 1313 2126 2024-02-05T16:26:56.000 2040299 82797 2040232 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 149 EBI 100 GCA_053203845.1 GCF_001107685.1-RS_2026_01_06 SLX Streptococcus pneumoniae GCF_001107685.1 type nasopharynx 98.79 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLEQ00000000.1 2012-01-05T09:56:37Z GCF_001107685.1 haploid public SMRU2086-sc-2011-01-27-1062299 85.46 0.62 47 2015-07-28T08:12:24 GCA_053203845.1 807392 44 6899_6#22 SMRU2086-sc-2011-01-27-1062299 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025774 1313 GCA_001107685.1 Generic.1.0 85.46 SRA GCA_001107685.1 category_na live 2018-03-09T09:53:02Z SMRU2086 PRJEB2397 Annotation submitted by SC SC SC 45 2018-03-09T09:53:02Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLEQ01 2009-09-24 SMRU2086 6.10 2012-01-05T09:56:37Z Prokka current 45 SMRU2086-sc-2011-01-27-1062299 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLEQ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2086 species_match 98.79 SAMEA2521627 6 Streptococcus pneumoniae 94.45 Streptococcus pneumoniae 1313 PRJEB3084 8 current na 94199 type Streptococcus pneumoniae 2019-05-11 12F 12F species Homo sapiens 1938 Streptococcus pneumoniae Streptococcus pneumoniae ERS455167 SC 2012 v1.2.4 2014-09-17T09:08:15.183 99.26 1969377 94.45 1313 1985 Streptococcus pneumoniae 2024-02-06T15:55:08.000 1972687 80632 1969376 CSF Homo sapiens Streptococcus pneumoniae Meningitis ST220 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900063175.2 type CSF 98.78 ERC000011 OK 40.0 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FHSK00000000.2 2014-09-16T09:22:33Z GCA_900063175.2 haploid public 2012220098-sc-1946919 88.12 0.31 44 2015-08-10T19:57:10 GCA_001457635.1 783138 47 13414_2#76 2012220098-sc-1946919 USA 13414_2#76 SAMEA2521627 1313 GCF_900063175.2 Generic.1.0 88.12 SRA GCF_900063175.2 category_na live 2019-04-18T15:39:23Z GPSC32 PRJEB3084 GCF_900063175.2-RS_2026_02_02 SC SC 32 1946919 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012220098 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSK02 2012 2245STDY5819593 2014-09-16T09:22:33Z Prokka current 32 2012220098-sc-1946919 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSK02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC32 species_match 98.78 SAMEA2521627 6 Streptococcus pneumoniae 94.45 Streptococcus pneumoniae 1313 PRJEB3084 8 current na Best-placed reference protein set; GeneMarkS-2+ 94199 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-02 12F 12F species Homo sapiens 1846 Streptococcus pneumoniae Streptococcus pneumoniae ERS455167 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:15.183 99.26 1969377 94.45 1313 2064 Streptococcus pneumoniae 2024-02-06T15:55:08.000 1972687 80632 1969376 CSF Homo sapiens Streptococcus pneumoniae Meningitis 165 ST220 EBI 100 GCA_001457635.1 GCF_900063175.2-RS_2026_02_02 SLX Streptococcus pneumoniae GCF_900063175.2 type CSF 98.78 ERC000011 OK 40.0 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FHSK00000000.2 2014-09-16T09:22:33Z GCF_900063175.2 haploid public 2012220098-sc-1946919 88.12 0.31 44 2015-08-10T19:57:10 GCA_001457635.1 783138 53 13414_2#76 2012220098-sc-1946919 USA 13414_2#76 SAMEA2521627 1313 GCA_900063175.2 Generic.1.0 88.12 SRA GCA_900063175.2 category_na live 2019-04-18T15:39:23Z GPSC32 PRJEB3084 Annotation submitted by SC SC SC 32 1946919 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012220098 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSK02 2012 GPSC32 substr. ST220 6.10 2014-09-16T09:22:33Z Prokka current 32 2012220098-sc-1946919 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSK02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC32 species_match 98.78 SAMEA2383199 8 Streptococcus pneumoniae 93.93 Streptococcus pneumoniae 1313 PRJEB4909 11 current na 79778 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2007 Streptococcus pneumoniae Streptococcus pneumoniae ERS409524 SC 2006/2012 v1.2.4 2014-07-17T08:09:39.083 99.06 2036302 93.93 1313 2055 2024-02-06T06:52:19.000 2038124 74948 2036300 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900028715.1 type blood 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/FELN00000000.1 2014-07-16T11:40:12Z GCA_900028715.1 haploid public 2110892_II-sc-1870450 87.16 0.31 51 2015-08-10T19:44:22 GCA_053203845.1 808018 48 12754_3#84 2110892_II-sc-1870450 Netherlands 12754_3#84 SAMEA2383199 1313 GCF_900028715.1 Generic.1.0 87.16 SRA GCF_900028715.1 category_na live 2018-03-09T10:42:30Z 2842STDY5753745 PRJEB4909 GCF_900028715.1-RS_2026_01_25 SC SC 45 1870450 2018-03-09T10:42:30Z 2014-07-16T00:00:00.000 2110892_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FELN01 2006/2012 2842STDY5753745 2014-07-16T11:40:12Z Prokka current 45 2110892_II-sc-1870450 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FELN01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753745 species_match 98.75 SAMEA2383199 8 Streptococcus pneumoniae 93.93 Streptococcus pneumoniae 1313 PRJEB4909 11 current na Best-placed reference protein set; GeneMarkS-2+ 79778 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1917 Streptococcus pneumoniae Streptococcus pneumoniae ERS409524 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:39.083 99.06 2036302 93.93 1313 2145 2024-02-06T06:52:19.000 2038124 74948 2036300 blood Homo sapiens Streptococcus pneumoniae Disease 175 EBI 100 GCA_053203845.1 GCF_900028715.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900028715.1 type blood 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/FELN00000000.1 2014-07-16T11:40:12Z GCF_900028715.1 haploid public 2110892_II-sc-1870450 87.16 0.31 51 2015-08-10T19:44:22 GCA_053203845.1 808018 53 12754_3#84 2110892_II-sc-1870450 Netherlands 12754_3#84 SAMEA2383199 1313 GCA_900028715.1 Generic.1.0 87.16 SRA GCA_900028715.1 category_na live 2018-03-09T10:42:30Z 2842STDY5753745 PRJEB4909 Annotation submitted by SC SC SC 45 1870450 2018-03-09T10:42:30Z 2014-07-16T00:00:00.000 2110892_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FELN01 2006/2012 2842STDY5753745 6.10 2014-07-16T11:40:12Z Prokka current 45 2110892_II-sc-1870450 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FELN01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753745 species_match 98.75 SAMEA1023696 9 Streptococcus pneumoniae 94.31 Streptococcus pneumoniae 1313 PRJEB2357 9 current na 74786 type Streptococcus pneumoniae 2015-07-11 15A 15A species Homo sapiens 2003 Streptococcus pneumoniae Streptococcus pneumoniae ERS019626 SC 2008-06-18 v1.2.4 2012-01-20T19:46:15.620 99.31 2024877 94.31 1313 2045 2024-02-06T09:03:51.000 2025050 74786 2024863 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001128845.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKJH00000000.1 2011-10-11T09:20:07Z GCA_001128845.1 haploid public SMRU468-sc-2011-01-27-1060657 87.03 0.62 50 2016-01-29T08:05:24 GCA_053203845.1 804675 42 6631_5#12 SMRU468-sc-2011-01-27-1060657 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023696 1313 GCF_001128845.1 Generic.1.0 87.03 SRA GCF_001128845.1 category_na live 2018-03-09T12:03:35Z SMRU468 PRJEB2357 GCF_001128845.1-RS_2026_01_18 SC SC 49 2018-03-09T12:03:35Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKJH01 2008-06-18 15A 2011-10-11T09:20:07Z Prokka current 49 SMRU468-sc-2011-01-27-1060657 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKJH01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU468 species_match 98.71 SAMEA1023696 9 Streptococcus pneumoniae 94.31 Streptococcus pneumoniae 1313 PRJEB2357 9 current na Best-placed reference protein set; GeneMarkS-2+ 74786 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 15A 15A species Homo sapiens 1919 Streptococcus pneumoniae Streptococcus pneumoniae ERS019626 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-06-18 v1.2.4 2012-01-20T19:46:15.620 99.31 2024877 94.31 1313 2127 2024-02-06T09:03:51.000 2025050 74786 2024863 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 162 EBI 100 GCA_053203845.1 GCF_001128845.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001128845.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKJH00000000.1 2011-10-11T09:20:07Z GCF_001128845.1 haploid public SMRU468-sc-2011-01-27-1060657 87.03 0.62 50 2016-01-29T08:05:24 GCA_053203845.1 804675 46 6631_5#12 SMRU468-sc-2011-01-27-1060657 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023696 1313 GCA_001128845.1 Generic.1.0 87.03 SRA GCA_001128845.1 category_na live 2018-03-09T12:03:35Z SMRU468 PRJEB2357 Annotation submitted by SC SC SC 49 2018-03-09T12:03:35Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKJH01 2008-06-18 SMRU468 6.10 2011-10-11T09:20:07Z Prokka current 49 SMRU468-sc-2011-01-27-1060657 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKJH01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU468 species_match 98.71 SAMEA1024209 9 Streptococcus pneumoniae 91.66 Streptococcus pneumoniae 1313 PRJEB2357 12 current na 84444 type Streptococcus pneumoniae 2015-07-11 15A 15A species Homo sapiens 2006 Streptococcus pneumoniae Streptococcus pneumoniae ERS019531 SC 2008-05-15 v1.2.4 2012-01-20T19:45:11.126 98.75 2049147 91.66 1313 2043 2024-02-05T16:27:54.000 2049341 73477 2049118 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001110965.1 type nasopharynx 98.77 OK 40.0 Streptococcus pneumoniae 29.4027 https://www.ncbi.nlm.nih.gov/nuccore/CKFB00000000.1 2011-10-11T09:20:06Z GCA_001110965.1 haploid public SMRU373-sc-2011-01-27-1060562 85.6 1.25 61 2016-01-29T08:05:21 GCA_053203845.1 814581 37 6630_3#13 SMRU373-sc-2011-01-27-1060562 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024209 1313 GCF_001110965.1 Generic.1.0 85.6 SRA GCF_001110965.1 category_na live 2018-03-09T09:53:04Z SMRU373 PRJEB2357 GCF_001110965.1-RS_2026_01_22 SC SC 50 2018-03-09T09:53:04Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKFB01 2008-05-15 15A 2011-10-11T09:20:06Z Prokka current 50 SMRU373-sc-2011-01-27-1060562 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKFB01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU373 species_match 98.77 SAMEA1024209 9 Streptococcus pneumoniae 91.66 Streptococcus pneumoniae 1313 PRJEB2357 12 current na Best-placed reference protein set; GeneMarkS-2+ 84444 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 15A 15A species Homo sapiens 1917 Streptococcus pneumoniae Streptococcus pneumoniae ERS019531 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-05-15 v1.2.4 2012-01-20T19:45:11.126 98.75 2049147 91.66 1313 2126 2024-02-05T16:27:54.000 2049341 73477 2049118 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 169 EBI 100 GCA_053203845.1 GCF_001110965.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_001110965.1 type nasopharynx 98.77 OK 40.0 Streptococcus pneumoniae 29.4027 https://www.ncbi.nlm.nih.gov/nuccore/CKFB00000000.1 2011-10-11T09:20:06Z GCF_001110965.1 haploid public SMRU373-sc-2011-01-27-1060562 85.6 1.25 61 2016-01-29T08:05:21 GCA_053203845.1 814581 40 6630_3#13 SMRU373-sc-2011-01-27-1060562 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024209 1313 GCA_001110965.1 Generic.1.0 85.6 SRA GCA_001110965.1 category_na live 2018-03-09T09:53:04Z SMRU373 PRJEB2357 Annotation submitted by SC SC SC 50 2018-03-09T09:53:04Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKFB01 2008-05-15 SMRU373 6.10 2011-10-11T09:20:06Z Prokka current 50 SMRU373-sc-2011-01-27-1060562 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKFB01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU373 species_match 98.77 SAMEA1026650 10 Streptococcus pneumoniae 88.72 Streptococcus pneumoniae 1313 PRJEB2417 10 current na 71675 type Streptococcus pneumoniae 2017-06-28 15A 15A species Homo sapiens 2052 Streptococcus pneumoniae ERS023408 SC 2010-02-08 v1.2.4 2012-01-20T20:19:24.393 97.01 2105138 88.72 1313 2097 2017-06-24T15:54:13.000 2105138 71675 2105137 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900192565.1 type Nasophaynx 98.77 OK 39.5 Streptococcus pneumoniae 3.48249 https://www.ncbi.nlm.nih.gov/nuccore/FYUG00000000.1 2011-09-14 GCA_900192565.1 haploid ERS023408 85.11 0.31 54 2017-06-28T08:06:09 GCA_053203845.1 831885 45 6486_6#2 United Kingdom UoS4346-sc-2011-02-14-1078462; 6486_62 1313 GCF_900192565.1 Generic.1.0 85.11 SRA Sample Description GCF_900192565.1 category_na live 2017-06-22 UoS4346 PRJEB2417 GCF_900192565.1-RS_2025_09_04 SC 54 1078462 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYUG01 2010-02-08 UoS4346 Prokka current 54 ERS023408 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYUG01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-28 UoS4346 species_match 98.77 SAMEA1026650 10 Streptococcus pneumoniae 88.72 Streptococcus pneumoniae 1313 PRJEB2417 10 current na Best-placed reference protein set; GeneMarkS-2+ 71675 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 15A 15A species Homo sapiens 1948 Streptococcus pneumoniae ERS023408 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-02-08 v1.2.4 2012-01-20T20:19:24.393 97.01 2105138 88.72 1313 2150 2017-06-24T15:54:13.000 2105138 71675 2105137 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 156 EBI 100 GCA_053203845.1 GCF_900192565.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900192565.1 type Nasophaynx 98.77 OK 39.5 Streptococcus pneumoniae 3.48249 https://www.ncbi.nlm.nih.gov/nuccore/FYUG00000000.1 2011-09-14 GCF_900192565.1 haploid ERS023408 85.11 0.31 54 2017-06-28T08:06:09 GCA_053203845.1 831885 46 6486_6#2 United Kingdom UoS4346-sc-2011-02-14-1078462; 6486_62 1313 GCA_900192565.1 Generic.1.0 85.11 SRA Sample Description GCA_900192565.1 category_na live 2017-06-22 UoS4346 PRJEB2417 Annotation submitted by SC SC 54 1078462 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYUG01 2010-02-08 UoS4346 6.10 Prokka current 54 ERS023408 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYUG01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-28 UoS4346 species_match 98.77 SAMEA2239292 4 Streptococcus pneumoniae 92.89 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 264472 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2044 Streptococcus pneumoniae Streptococcus pneumoniae ERS368104 SC 2006/2012 v1.2.4 2014-05-07T08:35:35.856 99.17 2062880 92.89 1313 2092 2024-02-06T05:09:28.000 2066176 102373 2062879 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900017315.1 type CSF 98.65 ERC000011 OK 39.5 Streptococcus pneumoniae 68.075 https://www.ncbi.nlm.nih.gov/nuccore/FDVA00000000.1 2014-03-18T09:35:30Z GCA_900017315.1 haploid public 2020169-sc-2013-11-05T12:11:13Z-1750665 87.32 0.31 35 2015-08-10T19:24:51 GCA_053203845.1 816328 48 11861_5#67 2020169-sc-2013-11-05T12:11:13Z-1750665 Netherlands 11861_5#67 SAMEA2239292 1313 GCF_900017315.1 Generic.1.0 87.32 SRA GCF_900017315.1 category_na live 2018-03-09T10:28:17Z 2842STDY5644676 PRJEB4909 GCF_900017315.1-RS_2025_09_28 SC SC 20 1750665 2018-03-09T10:28:17Z 2014-03-18T00:00:00.000 2020169 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDVA01 2006/2012 2842STDY5644676 2014-03-18T09:35:30Z Prokka current 20 2020169-sc-2013-11-05T12:11:13Z-1750665 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDVA01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644676 species_match 98.65 SAMEA2239292 4 Streptococcus pneumoniae 92.89 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 264472 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1939 Streptococcus pneumoniae Streptococcus pneumoniae ERS368104 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:35.856 99.17 2062880 92.89 1313 2158 2024-02-06T05:09:28.000 2066176 102373 2062879 CSF Homo sapiens Streptococcus pneumoniae Disease 165 EBI 100 GCA_053203845.1 GCF_900017315.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900017315.1 type CSF 98.65 ERC000011 OK 39.5 Streptococcus pneumoniae 68.075 https://www.ncbi.nlm.nih.gov/nuccore/FDVA00000000.1 2014-03-18T09:35:30Z GCF_900017315.1 haploid public 2020169-sc-2013-11-05T12:11:13Z-1750665 87.32 0.31 35 2015-08-10T19:24:51 GCA_053203845.1 816328 54 11861_5#67 2020169-sc-2013-11-05T12:11:13Z-1750665 Netherlands 11861_5#67 SAMEA2239292 1313 GCA_900017315.1 Generic.1.0 87.32 SRA GCA_900017315.1 category_na live 2018-03-09T10:28:17Z 2842STDY5644676 PRJEB4909 Annotation submitted by SC SC SC 20 1750665 2018-03-09T10:28:17Z 2014-03-18T00:00:00.000 2020169 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDVA01 2006/2012 2842STDY5644676 6.10 2014-03-18T09:35:30Z Prokka current 20 2020169-sc-2013-11-05T12:11:13Z-1750665 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDVA01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644676 species_match 98.65 SAMEA2239000 5 Streptococcus pneumoniae 92.91 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 153691 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2006 Streptococcus pneumoniae Streptococcus pneumoniae ERS367812 SC 2006/2012 v1.2.4 2014-05-07T08:35:13.526 98.84 2066964 92.91 1313 2052 2024-02-06T05:13:15.000 2070219 95138 2066964 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900025865.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FCRM00000000.1 2014-03-18T09:35:29Z GCA_900025865.1 haploid public 982064-sc-2013-11-05T12:06:17Z-1750365 87.52 0.47 39 2015-08-10T19:24:36 GCA_053203845.1 816863 46 11861_4#54 982064-sc-2013-11-05T12:06:17Z-1750365 Netherlands 11861_4#54 SAMEA2239000 1313 GCF_900025865.1 Generic.1.0 87.52 SRA GCF_900025865.1 category_na live 2018-03-09T10:28:41Z 2842STDY5644376 PRJEB4909 GCF_900025865.1-RS_2025_09_28 SC SC 27 1750365 2018-03-09T10:28:41Z 2014-03-18T00:00:00.000 982064 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCRM01 2006/2012 2842STDY5644376 2014-03-18T09:35:29Z Prokka current 27 982064-sc-2013-11-05T12:06:17Z-1750365 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCRM01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644376 species_match 98.86 SAMEA2239000 5 Streptococcus pneumoniae 92.91 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 153691 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1922 Streptococcus pneumoniae Streptococcus pneumoniae ERS367812 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:13.526 98.84 2066964 92.91 1313 2130 2024-02-06T05:13:15.000 2070219 95138 2066964 CSF Homo sapiens Streptococcus pneumoniae Disease 156 EBI 100 GCA_053203845.1 GCF_900025865.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900025865.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FCRM00000000.1 2014-03-18T09:35:29Z GCF_900025865.1 haploid public 982064-sc-2013-11-05T12:06:17Z-1750365 87.52 0.47 39 2015-08-10T19:24:36 GCA_053203845.1 816863 52 11861_4#54 982064-sc-2013-11-05T12:06:17Z-1750365 Netherlands 11861_4#54 SAMEA2239000 1313 GCA_900025865.1 Generic.1.0 87.52 SRA GCA_900025865.1 category_na live 2018-03-09T10:28:41Z 2842STDY5644376 PRJEB4909 Annotation submitted by SC SC SC 27 1750365 2018-03-09T10:28:41Z 2014-03-18T00:00:00.000 982064 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCRM01 2006/2012 2842STDY5644376 6.10 2014-03-18T09:35:29Z Prokka current 27 982064-sc-2013-11-05T12:06:17Z-1750365 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCRM01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644376 species_match 98.86 SAMEA2335995 6 Streptococcus pneumoniae 91.51 Streptococcus pneumoniae 1313 PRJEB3084 9 current na 111885 type Streptococcus pneumoniae 2019-05-15 15BC 15BC species Homo sapiens 2046 Streptococcus pneumoniae Streptococcus pneumoniae ERS394189 SC 2009 v1.2.4 2014-05-20T08:07:32.393 99.25 2084566 91.51 1313 2092 Streptococcus pneumoniae 2024-02-06T15:54:54.000 2087355 88832 2084565 blood Homo sapiens Streptococcus pneumoniae IPD ST10227 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900064825.2 type blood 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/FHKP00000000.2 2014-05-19T10:21:07Z GCA_900064825.2 haploid public 2010220051-sc-1810923 90.36 0.62 38 2015-08-10T19:29:22 GCA_001457635.1 823358 46 12291_4#63 2010220051-sc-1810923 USA 12291_4#63 SAMEA2335995 1313 GCF_900064825.2 Generic.1.0 90.36 SRA GCF_900064825.2 category_na live 2019-04-18T15:39:20Z GPSC11 PRJEB3084 GCF_900064825.2-RS_2025_12_27 SC SC 28 1810923 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2010220051 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHKP02 2009 2245STDY5699088 2014-05-19T10:21:07Z Prokka current 28 2010220051-sc-1810923 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHKP02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-15 GPSC11 species_match 98.74 SAMEA2335995 6 Streptococcus pneumoniae 91.51 Streptococcus pneumoniae 1313 PRJEB3084 9 current na Best-placed reference protein set; GeneMarkS-2+ 111885 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-27 15BC 15BC species Homo sapiens 1948 Streptococcus pneumoniae Streptococcus pneumoniae ERS394189 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-05-20T08:07:32.393 99.25 2084566 91.51 1313 2158 Streptococcus pneumoniae 2024-02-06T15:54:54.000 2087355 88832 2084565 blood Homo sapiens Streptococcus pneumoniae IPD 157 ST10227 EBI 100 GCA_001457635.1 GCF_900064825.2-RS_2025_12_27 SLX Streptococcus pneumoniae GCF_900064825.2 type blood 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/FHKP00000000.2 2014-05-19T10:21:07Z GCF_900064825.2 haploid public 2010220051-sc-1810923 90.36 0.62 38 2015-08-10T19:29:22 GCA_001457635.1 823358 53 12291_4#63 2010220051-sc-1810923 USA 12291_4#63 SAMEA2335995 1313 GCA_900064825.2 Generic.1.0 90.36 SRA GCA_900064825.2 category_na live 2019-04-18T15:39:20Z GPSC11 PRJEB3084 Annotation submitted by SC SC SC 28 1810923 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2010220051 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHKP02 2009 GPSC11 substr. ST10227 6.10 2014-05-19T10:21:07Z Prokka current 28 2010220051-sc-1810923 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHKP02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-15 GPSC11 species_match 98.74 SAMEA1026841 8 Streptococcus pneumoniae 92.39 Streptococcus pneumoniae 1313 PRJEB2417 8 current na 85078 type Streptococcus pneumoniae 2017-06-27 15B 15B species Homo sapiens 1993 Streptococcus pneumoniae ERS023292 SC 2009-03-09 v1.2.4 2011-09-23T19:13:59.363 97.71 2060809 92.39 1313 2029 2017-06-24T15:44:04.000 2060809 85078 2060799 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900191425.1 type Nasophaynx 98.81 OK 39.5 Streptococcus pneumoniae 5.0957 https://www.ncbi.nlm.nih.gov/nuccore/FYPU00000000.1 2011-09-20 GCA_900191425.1 haploid ERS023292 86.77 0.53 52 2017-06-28T08:06:20 GCA_053203845.1 813943 36 6512_3#22 United Kingdom UoS3251-sc-2011-02-14-1078346; 6512_322 1313 GCF_900191425.1 Generic.1.0 86.77 SRA Sample Description GCF_900191425.1 category_na live 2017-06-22 UoS3251 PRJEB2417 GCF_900191425.1-RS_2025_09_04 SC 52 1078346 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYPU01 2009-03-09 UoS3251 Prokka current 52 ERS023292 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYPU01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS3251 species_match 98.81 SAMEA1026841 8 Streptococcus pneumoniae 92.39 Streptococcus pneumoniae 1313 PRJEB2417 8 current na Best-placed reference protein set; GeneMarkS-2+ 85078 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 15B 15B species Homo sapiens 1892 Streptococcus pneumoniae ERS023292 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-09 v1.2.4 2011-09-23T19:13:59.363 97.71 2060809 92.39 1313 2091 2017-06-24T15:44:04.000 2060809 85078 2060799 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 161 EBI 100 GCA_053203845.1 GCF_900191425.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900191425.1 type Nasophaynx 98.81 OK 39.5 Streptococcus pneumoniae 5.0957 https://www.ncbi.nlm.nih.gov/nuccore/FYPU00000000.1 2011-09-20 GCF_900191425.1 haploid ERS023292 86.77 0.53 52 2017-06-28T08:06:20 GCA_053203845.1 813943 38 6512_3#22 United Kingdom UoS3251-sc-2011-02-14-1078346; 6512_322 1313 GCA_900191425.1 Generic.1.0 86.77 SRA Sample Description GCA_900191425.1 category_na live 2017-06-22 UoS3251 PRJEB2417 Annotation submitted by SC SC 52 1078346 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYPU01 2009-03-09 UoS3251 6.10 Prokka current 52 ERS023292 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYPU01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS3251 species_match 98.81 SAMEA1026668 8 Streptococcus pneumoniae 92.83 Streptococcus pneumoniae 1313 PRJEB2417 8 current na 84997 type Streptococcus pneumoniae 2017-06-27 15B 15B species Homo sapiens 1970 Streptococcus pneumoniae ERS023313 SC 2009-03-25 v1.2.4 2011-09-23T19:14:07.530 98.7 2051068 92.83 1313 2014 2017-06-24T15:46:48.000 2051084 84997 2051063 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900191535.1 type Nasophaynx 98.82 OK 39.5 Streptococcus pneumoniae 27.0021 https://www.ncbi.nlm.nih.gov/nuccore/FYQX00000000.1 2011-09-20 GCA_900191535.1 haploid ERS023313 86.76 0.47 51 2017-06-28T08:06:22 GCA_053203845.1 810544 44 6512_4#19 United Kingdom UoS3315-sc-2011-02-14-1078367; 6512_419 1313 GCF_900191535.1 Generic.1.0 86.76 SRA Sample Description GCF_900191535.1 category_na live 2017-06-22 UoS3315 PRJEB2417 GCF_900191535.1-RS_2025_09_04 SC 50 1078367 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYQX01 2009-03-25 UoS3315 Prokka current 50 ERS023313 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYQX01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS3315 species_match 98.82 SAMEA1026668 8 Streptococcus pneumoniae 92.83 Streptococcus pneumoniae 1313 PRJEB2417 8 current na Best-placed reference protein set; GeneMarkS-2+ 84997 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 15B 15B species Homo sapiens 1880 Streptococcus pneumoniae ERS023313 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-25 v1.2.4 2011-09-23T19:14:07.530 98.7 2051068 92.83 1313 2075 2017-06-24T15:46:48.000 2051084 84997 2051063 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 149 EBI 100 GCA_053203845.1 GCF_900191535.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900191535.1 type Nasophaynx 98.82 OK 39.5 Streptococcus pneumoniae 27.0021 https://www.ncbi.nlm.nih.gov/nuccore/FYQX00000000.1 2011-09-20 GCF_900191535.1 haploid ERS023313 86.76 0.47 51 2017-06-28T08:06:22 GCA_053203845.1 810544 46 6512_4#19 United Kingdom UoS3315-sc-2011-02-14-1078367; 6512_419 1313 GCA_900191535.1 Generic.1.0 86.76 SRA Sample Description GCA_900191535.1 category_na live 2017-06-22 UoS3315 PRJEB2417 Annotation submitted by SC SC 50 1078367 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYQX01 2009-03-25 UoS3315 6.10 Prokka current 50 ERS023313 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYQX01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS3315 species_match 98.82 SAMEA1028845 8 Streptococcus pneumoniae 91.6 Streptococcus pneumoniae 1313 PRJEB2479 9 current na 97315 type Streptococcus pneumoniae 2015-07-13 15B 15B species Homo sapiens 2018 Streptococcus pneumoniae Streptococcus pneumoniae ERS022087 SC 2010-04-05 v1.2.4 2012-01-20T20:11:27.796 99.19 2062347 91.6 1313 2061 2024-02-06T09:02:13.000 2062563 84197 2062319 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001086225.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 68.8368 https://www.ncbi.nlm.nih.gov/nuccore/CLSK00000000.1 2012-01-16T15:10:26Z GCA_001086225.1 haploid public SMRU2577-sc-2011-01-27-1062790 86.09 0.31 56 2015-07-28T08:12:53 GCA_053203845.1 814649 43 6972_3#9 SMRU2577-sc-2011-01-27-1062790 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028845 1313 GCF_001086225.1 Generic.1.0 86.09 SRA GCF_001086225.1 category_na live 2018-03-09T11:41:40Z SMRU2577 PRJEB2479 GCF_001086225.1-RS_2026_01_21 SC SC 54 2018-03-09T11:41:40Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLSK01 2010-04-05 SMRU2577 2012-01-16T15:10:26Z Prokka current 54 SMRU2577-sc-2011-01-27-1062790 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLSK01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2577 species_match 98.7 SAMEA1028845 8 Streptococcus pneumoniae 91.6 Streptococcus pneumoniae 1313 PRJEB2479 9 current na Best-placed reference protein set; GeneMarkS-2+ 97315 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-21 15B 15B species Homo sapiens 1958 Streptococcus pneumoniae Streptococcus pneumoniae ERS022087 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-04-05 v1.2.4 2012-01-20T20:11:27.796 99.19 2062347 91.6 1313 2177 2024-02-06T09:02:13.000 2062563 84197 2062319 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 174 EBI 100 GCA_053203845.1 GCF_001086225.1-RS_2026_01_21 SLX Streptococcus pneumoniae GCF_001086225.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 68.8368 https://www.ncbi.nlm.nih.gov/nuccore/CLSK00000000.1 2012-01-16T15:10:26Z GCF_001086225.1 haploid public SMRU2577-sc-2011-01-27-1062790 86.09 0.31 56 2015-07-28T08:12:53 GCA_053203845.1 814649 45 6972_3#9 SMRU2577-sc-2011-01-27-1062790 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028845 1313 GCA_001086225.1 Generic.1.0 86.09 SRA GCA_001086225.1 category_na live 2018-03-09T11:41:40Z SMRU2577 PRJEB2479 Annotation submitted by SC SC SC 54 2018-03-09T11:41:40Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLSK01 2010-04-05 SMRU2577 6.10 2012-01-16T15:10:26Z Prokka current 54 SMRU2577-sc-2011-01-27-1062790 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLSK01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2577 species_match 98.7 SAMEA1463150 9 Streptococcus pneumoniae 91.32 Streptococcus pneumoniae 1313 PRJEB2632 9 current na 82265 type Streptococcus pneumoniae 2015-07-28 15B/C 15B/C species Homo sapiens 1974 Streptococcus pneumoniae Streptococcus pneumoniae ERS070077 SC 2007 v1.2.4 2012-06-06T09:06:38.940 99.47 2072042 91.32 1313 2004 2024-02-05T23:04:24.000 QLCSW 2072042 82265 2072042 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001301695.2 type nasopharynx 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/CHXG00000000.2 2012-05-28T10:19:33Z GCA_001301695.2 haploid public MD5110-sc-2011-11-08T10:08:19Z-1298445 86.23 0.47 146 2015-09-10T08:20:51 QLCSW GCA_053203845.1 819602 30 7622_5#66 MD5110-sc-2011-11-08T10:08:19Z-1298445 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463150 1313 GCF_001301695.1 Generic.1.0 86.23 SRA GCF_001301695.1 category_na live 2018-03-09T10:03:24Z MD5110 PRJEB2632 GCF_001301695.1-RS_2026_01_19 SC SC 146 QLCSW 2018-03-09T10:03:24Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHXG02 2007 MD5110 2012-05-28T10:19:33Z Velvet current 146 MD5110-sc-2011-11-08T10:08:19Z-1298445 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CHXG02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-28 MD5110 species_match 98.79 SAMEA1463150 9 Streptococcus pneumoniae 91.32 Streptococcus pneumoniae 1313 PRJEB2632 9 current na Best-placed reference protein set; GeneMarkS-2+ 82265 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 15B/C 15B/C species Homo sapiens 1935 Streptococcus pneumoniae Streptococcus pneumoniae ERS070077 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:38.940 99.47 2072042 91.32 1313 2154 2024-02-05T23:04:24.000 QLCSW 2072042 82265 2072042 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 170 EBI 100 GCA_053203845.1 GCF_001301695.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001301695.1 type nasopharynx 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/CHXG00000000.2 2012-05-28T10:19:33Z GCF_001301695.1 haploid public MD5110-sc-2011-11-08T10:08:19Z-1298445 86.23 0.47 146 2015-09-10T08:20:51 QLCSW GCA_053203845.1 819602 49 7622_5#66 MD5110-sc-2011-11-08T10:08:19Z-1298445 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463150 1313 GCA_001301695.2 Generic.1.0 86.23 SRA GCA_001301695.2 category_na live 2018-03-09T10:03:24Z MD5110 PRJEB2632 Annotation submitted by SC SC SC 146 QLCSW 2018-03-09T10:03:24Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHXG02 2007 MD5110 6.10 2012-05-28T10:19:33Z Velvet current 146 MD5110-sc-2011-11-08T10:08:19Z-1298445 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CHXG02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-28 MD5110 species_match 98.79 SAMEA2521683 7 Streptococcus pneumoniae 91.96 Streptococcus pneumoniae 1313 PRJEB3084 10 current na 115927 type Streptococcus pneumoniae 2019-05-15 15BC 15BC species Homo sapiens 2009 Streptococcus pneumoniae Streptococcus pneumoniae ERS455223 SC 2012 v1.2.4 2014-09-17T09:08:17.246 99.31 2062711 91.96 1313 2056 Streptococcus pneumoniae 2024-02-06T15:55:11.000 2064406 76218 2062710 blood Homo sapiens Streptococcus pneumoniae IPD ST199 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900050735.2 type blood 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHTP00000000.2 2014-09-16T09:22:32Z GCA_900050735.2 haploid public 2013215781-sc-1946976 86.44 0.47 49 2015-08-10T19:57:12 GCA_053203845.1 815161 47 13414_3#37 2013215781-sc-1946976 USA 13414_3#37 SAMEA2521683 1313 GCF_900050735.2 Generic.1.0 86.44 SRA GCF_900050735.2 category_na live 2019-04-18T15:39:24Z GPSC4 PRJEB3084 GCF_900050735.2-RS_2026_01_15 SC SC 41 1946976 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2013215781 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHTP02 2012 2245STDY5819650 2014-09-16T09:22:32Z Prokka current 41 2013215781-sc-1946976 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHTP02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-15 GPSC4 species_match 98.81 SAMEA2521683 7 Streptococcus pneumoniae 91.96 Streptococcus pneumoniae 1313 PRJEB3084 10 current na Best-placed reference protein set; GeneMarkS-2+ 115927 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-15 15BC 15BC species Homo sapiens 1912 Streptococcus pneumoniae Streptococcus pneumoniae ERS455223 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:17.246 99.31 2062711 91.96 1313 2126 Streptococcus pneumoniae 2024-02-06T15:55:11.000 2064406 76218 2062710 blood Homo sapiens Streptococcus pneumoniae IPD 162 ST199 EBI 100 GCA_053203845.1 GCF_900050735.2-RS_2026_01_15 SLX Streptococcus pneumoniae GCF_900050735.2 type blood 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHTP00000000.2 2014-09-16T09:22:32Z GCF_900050735.2 haploid public 2013215781-sc-1946976 86.44 0.47 49 2015-08-10T19:57:12 GCA_053203845.1 815161 52 13414_3#37 2013215781-sc-1946976 USA 13414_3#37 SAMEA2521683 1313 GCA_900050735.2 Generic.1.0 86.44 SRA GCA_900050735.2 category_na live 2019-04-18T15:39:24Z GPSC4 PRJEB3084 Annotation submitted by SC SC SC 41 1946976 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2013215781 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHTP02 2012 GPSC4 substr. ST199 6.10 2014-09-16T09:22:32Z Prokka current 41 2013215781-sc-1946976 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHTP02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-15 GPSC4 species_match 98.81 SAMEA1026564 9 Streptococcus pneumoniae 91.98 Streptococcus pneumoniae 1313 PRJEB2417 9 current na 73547 type Streptococcus pneumoniae 2017-06-27 15B 15B species Homo sapiens 2018 Streptococcus pneumoniae ERS025145 SC 2011-01-10 v1.2.4 2011-09-29T19:48:45.596 98.6 2059342 91.98 1313 2072 2017-06-24T15:58:54.000 2059342 73547 2059334 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900193125.1 type Nasophaynx 98.73 OK 39.5 Streptococcus pneumoniae 22.3097 https://www.ncbi.nlm.nih.gov/nuccore/FYWL00000000.1 2011-09-27 GCA_900193125.1 haploid ERS025145 86.32 0.47 50 2017-06-28T08:06:28 GCA_053203845.1 816084 54 6569_8#18 United Kingdom UoS5109-sc-2011-03-11-1098955; 6569_818 1313 GCF_900193125.1 Generic.1.0 86.32 SRA Sample Description GCF_900193125.1 category_na live 2017-06-22 UoS5109 PRJEB2417 GCF_900193125.1-RS_2025_09_01 SC 50 1098955 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYWL01 2011-01-10 UoS5109 Prokka current 50 ERS025145 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYWL01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS5109 species_match 98.73 SAMEA1026564 9 Streptococcus pneumoniae 91.98 Streptococcus pneumoniae 1313 PRJEB2417 9 current na Best-placed reference protein set; GeneMarkS-2+ 73547 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-01 15B 15B species Homo sapiens 1897 Streptococcus pneumoniae ERS025145 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2011-01-10 v1.2.4 2011-09-29T19:48:45.596 98.6 2059342 91.98 1313 2118 2017-06-24T15:58:54.000 2059342 73547 2059334 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 166 EBI 100 GCA_053203845.1 GCF_900193125.1-RS_2025_09_01 SLX Streptococcus pneumoniae GCF_900193125.1 type Nasophaynx 98.73 OK 39.5 Streptococcus pneumoniae 22.3097 https://www.ncbi.nlm.nih.gov/nuccore/FYWL00000000.1 2011-09-27 GCF_900193125.1 haploid ERS025145 86.32 0.47 50 2017-06-28T08:06:28 GCA_053203845.1 816084 55 6569_8#18 United Kingdom UoS5109-sc-2011-03-11-1098955; 6569_818 1313 GCA_900193125.1 Generic.1.0 86.32 SRA Sample Description GCA_900193125.1 category_na live 2017-06-22 UoS5109 PRJEB2417 Annotation submitted by SC SC 50 1098955 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYWL01 2011-01-10 UoS5109 6.10 Prokka current 50 ERS025145 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYWL01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS5109 species_match 98.73 SAMEA1032710 9 Streptococcus pneumoniae 90.49 Streptococcus pneumoniae 1313 PRJEB2632 9 current na 73491 type Streptococcus pneumoniae 2015-07-29 15B/C 15B/C species Homo sapiens 2023 Streptococcus pneumoniae Streptococcus pneumoniae ERS044067 SC 2001 v1.2.4 2012-01-23T19:53:58.316 98.84 2118357 90.49 1313 2054 2024-02-05T17:27:54.000 2118357 73491 2118357 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 1 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001139625.2 type nasopharynx 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/CNSX00000000.2 2012-01-19T13:56:12Z GCA_001139625.2 haploid public 103453-sc-2011-08-01T09:45:19Z-1250132 87.35 0.31 168 2015-09-10T08:19:58 GCA_053203845.1 836441 30 6999_4#10 103453-sc-2011-08-01T09:45:19Z-1250132 USA: Massachesetts Streptococcus pneumoniae SAMEA1032710 1313 GCF_001139625.1 Generic.1.0 87.35 SRA GCF_001139625.1 category_na live 2018-03-09T09:53:49Z 103453 PRJEB2632 GCF_001139625.1-RS_2025_09_15 SC SC 168 2018-03-09T09:53:49Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNSX02 2001 103453 2012-01-19T13:56:12Z Velvet current 168 103453-sc-2011-08-01T09:45:19Z-1250132 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNSX02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 103453 species_match 98.84 SAMEA1032710 9 Streptococcus pneumoniae 90.49 Streptococcus pneumoniae 1313 PRJEB2632 9 current na Best-placed reference protein set; GeneMarkS-2+ 73491 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-15 15B/C 15B/C species Homo sapiens 1980 Streptococcus pneumoniae Streptococcus pneumoniae ERS044067 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2001 v1.2.4 2012-01-23T19:53:58.316 98.84 2118357 90.49 1313 2201 2024-02-05T17:27:54.000 2118357 73491 2118357 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 171 EBI 100 GCA_053203845.1 GCF_001139625.1-RS_2025_09_15 SLX Streptococcus pneumoniae GCF_001139625.1 type nasopharynx 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/CNSX00000000.2 2012-01-19T13:56:12Z GCF_001139625.1 haploid public 103453-sc-2011-08-01T09:45:19Z-1250132 87.35 0.31 168 2015-09-10T08:19:58 GCA_053203845.1 836441 50 6999_4#10 103453-sc-2011-08-01T09:45:19Z-1250132 USA: Massachesetts Streptococcus pneumoniae SAMEA1032710 1313 GCA_001139625.2 Generic.1.0 87.35 SRA GCA_001139625.2 category_na live 2018-03-09T09:53:49Z 103453 PRJEB2632 Annotation submitted by SC SC SC 168 2018-03-09T09:53:49Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNSX02 2001 103453 6.10 2012-01-19T13:56:12Z Velvet current 168 103453-sc-2011-08-01T09:45:19Z-1250132 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNSX02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 103453 species_match 98.84 SAMEA2521660 7 Streptococcus pneumoniae 92.15 Streptococcus pneumoniae 1313 PRJEB3084 8 current na 111190 type Streptococcus pneumoniae 2019-05-15 15BC 15BC species Homo sapiens 2028 Streptococcus pneumoniae Streptococcus pneumoniae ERS455200 SC 2012 v1.2.4 2014-09-17T09:08:16.296 99.22 2089703 92.15 1313 2076 Streptococcus pneumoniae 2024-02-06T15:55:10.000 2090916 104729 2089694 blood Homo sapiens Streptococcus pneumoniae IPD ST1262 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900056435.2 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 71.0838 https://www.ncbi.nlm.nih.gov/nuccore/FHTB00000000.2 2014-09-16T09:22:32Z GCA_900056435.2 haploid public 2012224338-sc-1946953 87.75 0.62 48 2015-08-10T19:57:11 GCA_053203845.1 825568 48 13414_3#14 2012224338-sc-1946953 USA 13414_3#14 SAMEA2521660 1313 GCF_900056435.2 Generic.1.0 87.75 SRA GCF_900056435.2 category_na live 2019-04-18T15:39:24Z GPSC11 PRJEB3084 GCF_900056435.2-RS_2026_01_13 SC SC 42 1946953 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2012224338 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHTB02 2012 2245STDY5819627 2014-09-16T09:22:32Z Prokka current 42 2012224338-sc-1946953 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHTB02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-15 GPSC11 species_match 98.82 SAMEA2521660 7 Streptococcus pneumoniae 92.15 Streptococcus pneumoniae 1313 PRJEB3084 8 current na Best-placed reference protein set; GeneMarkS-2+ 111190 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-13 15BC 15BC species Homo sapiens 1965 Streptococcus pneumoniae Streptococcus pneumoniae ERS455200 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:16.296 99.22 2089703 92.15 1313 2176 Streptococcus pneumoniae 2024-02-06T15:55:10.000 2090916 104729 2089694 blood Homo sapiens Streptococcus pneumoniae IPD 158 ST1262 EBI 100 GCA_053203845.1 GCF_900056435.2-RS_2026_01_13 SLX Streptococcus pneumoniae GCF_900056435.2 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 71.0838 https://www.ncbi.nlm.nih.gov/nuccore/FHTB00000000.2 2014-09-16T09:22:32Z GCF_900056435.2 haploid public 2012224338-sc-1946953 87.75 0.62 48 2015-08-10T19:57:11 GCA_053203845.1 825568 53 13414_3#14 2012224338-sc-1946953 USA 13414_3#14 SAMEA2521660 1313 GCA_900056435.2 Generic.1.0 87.75 SRA GCA_900056435.2 category_na live 2019-04-18T15:39:24Z GPSC11 PRJEB3084 Annotation submitted by SC SC SC 42 1946953 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2012224338 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHTB02 2012 GPSC11 substr. ST1262 6.10 2014-09-16T09:22:32Z Prokka current 42 2012224338-sc-1946953 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHTB02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-15 GPSC11 species_match 98.82 SAMEA1025130 8 Streptococcus pneumoniae 92.07 Streptococcus pneumoniae 1313 PRJEB2395 8 current na 95183 type Streptococcus pneumoniae 2015-07-28 16F 16F species Homo sapiens 2085 Streptococcus pneumoniae Streptococcus pneumoniae ERS021014 SC 2009-04-07 v1.2.4 2012-01-20T19:59:02.286 99.1 2102116 92.07 1313 2129 2024-02-05T16:19:51.000 2102127 95183 2102094 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001340375.1 type nasopharynx 98.78 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CFBU00000000.1 2011-11-15T09:28:18Z GCA_001340375.1 haploid public SMRU1504-sc-2011-01-27-1061717 91.69 0.57 50 2015-07-28T08:11:43 GCA_001457635.1 832879 44 6753_2#15 SMRU1504-sc-2011-01-27-1061717 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025130 1313 GCF_001340375.1 Generic.1.0 91.69 SRA GCF_001340375.1 category_na live 2018-03-09T09:52:56Z SMRU1504 PRJEB2395 GCF_001340375.1-RS_2026_01_18 SC SC 49 2018-03-09T09:52:56Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFBU01 2009-04-07 SMRU1504 2011-11-15T09:28:18Z Prokka current 49 SMRU1504-sc-2011-01-27-1061717 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFBU01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-01 SMRU1504 species_match 98.78 SAMEA1025130 8 Streptococcus pneumoniae 92.07 Streptococcus pneumoniae 1313 PRJEB2395 8 current na Best-placed reference protein set; GeneMarkS-2+ 95183 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 16F 16F species Homo sapiens 2022 Streptococcus pneumoniae Streptococcus pneumoniae ERS021014 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-07 v1.2.4 2012-01-20T19:59:02.286 99.1 2102116 92.07 1313 2236 2024-02-05T16:19:51.000 2102127 95183 2102094 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 168 EBI 100 GCA_001457635.1 GCF_001340375.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001340375.1 type nasopharynx 98.78 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CFBU00000000.1 2011-11-15T09:28:18Z GCF_001340375.1 haploid public SMRU1504-sc-2011-01-27-1061717 91.69 0.57 50 2015-07-28T08:11:43 GCA_001457635.1 832879 46 6753_2#15 SMRU1504-sc-2011-01-27-1061717 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025130 1313 GCA_001340375.1 Generic.1.0 91.69 SRA GCA_001340375.1 category_na live 2018-03-09T09:52:56Z SMRU1504 PRJEB2395 Annotation submitted by SC SC SC 49 2018-03-09T09:52:56Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFBU01 2009-04-07 SMRU1504 6.10 2011-11-15T09:28:18Z Prokka current 49 SMRU1504-sc-2011-01-27-1061717 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFBU01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-01 SMRU1504 species_match 98.78 SAMEA2238476 5 Streptococcus pneumoniae 93.69 Streptococcus pneumoniae 1313 PRJEB4909 9 current na 185070 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2029 Streptococcus pneumoniae Streptococcus pneumoniae ERS367288 SC 2006/2012 v1.2.4 2014-05-07T08:34:31.436 99.1 2062353 93.69 1313 2076 2024-02-06T05:03:39.000 2067495 80790 2062353 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900036175.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FDZW00000000.1 2014-03-18T09:35:30Z GCA_900036175.1 haploid public 2080023-sc-2013-11-05T11:57:06Z-1749836 88.05 0.33 48 2015-08-10T19:24:14 GCA_053203845.1 816583 47 11860_6#10 2080023-sc-2013-11-05T11:57:06Z-1749836 Netherlands 11860_6#10 SAMEA2238476 1313 GCF_900036175.1 Generic.1.0 88.05 SRA GCF_900036175.1 category_na live 2018-03-09T10:27:34Z 2842STDY5643847 PRJEB4909 GCF_900036175.1-RS_2025_09_21 SC SC 31 1749836 2018-03-09T10:27:34Z 2014-03-18T00:00:00.000 2080023 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDZW01 2006/2012 2842STDY5643847 2014-03-18T09:35:30Z Prokka current 31 2080023-sc-2013-11-05T11:57:06Z-1749836 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDZW01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643847 species_match 98.83 SAMEA2238476 5 Streptococcus pneumoniae 93.69 Streptococcus pneumoniae 1313 PRJEB4909 9 current na Best-placed reference protein set; GeneMarkS-2+ 185070 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1933 Streptococcus pneumoniae Streptococcus pneumoniae ERS367288 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:31.436 99.1 2062353 93.69 1313 2150 2024-02-06T05:03:39.000 2067495 80790 2062353 CSF Homo sapiens Streptococcus pneumoniae Disease 163 EBI 100 GCA_053203845.1 GCF_900036175.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900036175.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FDZW00000000.1 2014-03-18T09:35:30Z GCF_900036175.1 haploid public 2080023-sc-2013-11-05T11:57:06Z-1749836 88.05 0.33 48 2015-08-10T19:24:14 GCA_053203845.1 816583 54 11860_6#10 2080023-sc-2013-11-05T11:57:06Z-1749836 Netherlands 11860_6#10 SAMEA2238476 1313 GCA_900036175.1 Generic.1.0 88.05 SRA GCA_900036175.1 category_na live 2018-03-09T10:27:34Z 2842STDY5643847 PRJEB4909 Annotation submitted by SC SC SC 31 1749836 2018-03-09T10:27:34Z 2014-03-18T00:00:00.000 2080023 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDZW01 2006/2012 2842STDY5643847 6.10 2014-03-18T09:35:30Z Prokka current 31 2080023-sc-2013-11-05T11:57:06Z-1749836 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDZW01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643847 species_match 98.83 SAMEA1026672 6 Streptococcus pneumoniae 90.25 Streptococcus pneumoniae 1313 PRJEB2417 9 current na 136649 type Streptococcus pneumoniae 2017-06-27 15C 15C species Homo sapiens 2057 Streptococcus pneumoniae ERS023245 SC 2008-12-17 v1.2.4 2011-09-23T19:13:41.466 98.84 2099336 90.25 1313 2102 2017-06-24T15:39:59.000 2102838 77906 2099335 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900190945.1 type Nasophaynx 98.84 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FYOB00000000.1 2011-09-20 GCA_900190945.1 haploid ERS023245 86.34 0.47 59 2017-06-28T08:06:16 GCA_053203845.1 830930 45 6512_1#23 United Kingdom UoS3079-sc-2011-02-14-1078299; 6512_123 1313 GCF_900190945.1 Generic.1.0 86.34 SRA Sample Description GCF_900190945.1 category_na live 2017-06-22 UoS3079 PRJEB2417 GCF_900190945.1-RS_2025_08_31 SC 42 1078299 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYOB01 2008-12-17 UoS3079 Prokka current 42 ERS023245 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYOB01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS3079 species_match 98.84 SAMEA1026672 6 Streptococcus pneumoniae 90.25 Streptococcus pneumoniae 1313 PRJEB2417 9 current na Best-placed reference protein set; GeneMarkS-2+ 136649 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-31 15C 15C species Homo sapiens 1970 Streptococcus pneumoniae ERS023245 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-12-17 v1.2.4 2011-09-23T19:13:41.466 98.84 2099336 90.25 1313 2180 2017-06-24T15:39:59.000 2102838 77906 2099335 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 163 EBI 100 GCA_053203845.1 GCF_900190945.1-RS_2025_08_31 SLX Streptococcus pneumoniae GCF_900190945.1 type Nasophaynx 98.84 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FYOB00000000.1 2011-09-20 GCF_900190945.1 haploid ERS023245 86.34 0.47 59 2017-06-28T08:06:16 GCA_053203845.1 830930 47 6512_1#23 United Kingdom UoS3079-sc-2011-02-14-1078299; 6512_123 1313 GCA_900190945.1 Generic.1.0 86.34 SRA Sample Description GCA_900190945.1 category_na live 2017-06-22 UoS3079 PRJEB2417 Annotation submitted by SC SC 42 1078299 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYOB01 2008-12-17 UoS3079 6.10 Prokka current 42 ERS023245 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYOB01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS3079 species_match 98.84 SAMEA2238584 8 Streptococcus pneumoniae 91.95 Streptococcus pneumoniae 1313 PRJEB4909 11 current na 94631 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2023 Streptococcus pneumoniae Streptococcus pneumoniae ERS367396 SC 2006/2012 v1.2.4 2014-05-07T08:34:41.300 99.31 2092193 91.95 1313 2070 2024-02-06T05:13:09.000 2096326 73532 2092193 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900023435.1 type CSF 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FECL00000000.1 2014-03-18T09:35:30Z GCA_900023435.1 haploid public 2082187-sc-2013-11-05T11:58:59Z-1749945 87.67 0.62 56 2015-08-10T19:24:18 GCA_053203845.1 826695 47 11861_1#21 2082187-sc-2013-11-05T11:58:59Z-1749945 Netherlands 11861_1#21 SAMEA2238584 1313 GCF_900023435.1 Generic.1.0 87.67 SRA GCF_900023435.1 category_na live 2018-03-09T10:28:41Z 2842STDY5643956 PRJEB4909 GCF_900023435.1-RS_2026_01_11 SC SC 42 1749945 2018-03-09T10:28:41Z 2014-03-18T00:00:00.000 2082187 https://www.ncbi.nlm.nih.gov/Traces/wgs/FECL01 2006/2012 2842STDY5643956 2014-03-18T09:35:30Z Prokka current 42 2082187-sc-2013-11-05T11:58:59Z-1749945 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FECL01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643956 species_match 98.82 SAMEA2238584 8 Streptococcus pneumoniae 91.95 Streptococcus pneumoniae 1313 PRJEB4909 11 current na Best-placed reference protein set; GeneMarkS-2+ 94631 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1955 Streptococcus pneumoniae Streptococcus pneumoniae ERS367396 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:41.300 99.31 2092193 91.95 1313 2169 2024-02-06T05:13:09.000 2096326 73532 2092193 CSF Homo sapiens Streptococcus pneumoniae Disease 161 EBI 100 GCA_053203845.1 GCF_900023435.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900023435.1 type CSF 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FECL00000000.1 2014-03-18T09:35:30Z GCF_900023435.1 haploid public 2082187-sc-2013-11-05T11:58:59Z-1749945 87.67 0.62 56 2015-08-10T19:24:18 GCA_053203845.1 826695 53 11861_1#21 2082187-sc-2013-11-05T11:58:59Z-1749945 Netherlands 11861_1#21 SAMEA2238584 1313 GCA_900023435.1 Generic.1.0 87.67 SRA GCA_900023435.1 category_na live 2018-03-09T10:28:41Z 2842STDY5643956 PRJEB4909 Annotation submitted by SC SC SC 42 1749945 2018-03-09T10:28:41Z 2014-03-18T00:00:00.000 2082187 https://www.ncbi.nlm.nih.gov/Traces/wgs/FECL01 2006/2012 2842STDY5643956 6.10 2014-03-18T09:35:30Z Prokka current 42 2082187-sc-2013-11-05T11:58:59Z-1749945 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FECL01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643956 species_match 98.82 SAMEA1029218 10 Streptococcus pneumoniae 88.88 Streptococcus pneumoniae 1313 PRJEB2480 10 current na 66871 type Streptococcus pneumoniae 2015-07-14 16F 16F species Homo sapiens 2094 Streptococcus pneumoniae Streptococcus pneumoniae ERS022527 SC 2010-09-06 v1.2.4 2012-02-09T20:49:08.776 99.26 2099895 88.88 1313 2131 2024-02-05T16:15:44.000 2099895 66871 2099881 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900003765.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CMIO00000000.1 2012-02-07T17:03:03Z GCA_900003765.1 haploid public SMRU3017-sc-2011-01-27-1063230 88.41 0.51 61 2015-07-28T08:13:18 GCA_001457635.1 832082 37 7038_7#17 SMRU3017-sc-2011-01-27-1063230 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029218 1313 GCF_900003765.1 Generic.1.0 88.41 SRA GCF_900003765.1 category_na live 2018-03-09T09:52:53Z SMRU3017 PRJEB2480 GCF_900003765.1-RS_2026_01_25 SC SC 61 2018-03-09T09:52:53Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMIO01 2010-09-06 SMRU3017 2012-02-07T17:03:03Z Prokka current 61 SMRU3017-sc-2011-01-27-1063230 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMIO01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU3017 species_match 98.71 SAMEA1029218 10 Streptococcus pneumoniae 88.88 Streptococcus pneumoniae 1313 PRJEB2480 10 current na Best-placed reference protein set; GeneMarkS-2+ 66871 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 16F 16F species Homo sapiens 2026 Streptococcus pneumoniae Streptococcus pneumoniae ERS022527 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-09-06 v1.2.4 2012-02-09T20:49:08.776 99.26 2099895 88.88 1313 2250 2024-02-05T16:15:44.000 2099895 66871 2099881 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 183 EBI 100 GCA_001457635.1 GCF_900003765.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900003765.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CMIO00000000.1 2012-02-07T17:03:03Z GCF_900003765.1 haploid public SMRU3017-sc-2011-01-27-1063230 88.41 0.51 61 2015-07-28T08:13:18 GCA_001457635.1 832082 41 7038_7#17 SMRU3017-sc-2011-01-27-1063230 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029218 1313 GCA_900003765.1 Generic.1.0 88.41 SRA GCA_900003765.1 category_na live 2018-03-09T09:52:53Z SMRU3017 PRJEB2480 Annotation submitted by SC SC SC 61 2018-03-09T09:52:53Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMIO01 2010-09-06 SMRU3017 6.10 2012-02-07T17:03:03Z Prokka current 61 SMRU3017-sc-2011-01-27-1063230 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMIO01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU3017 species_match 98.71 SAMEA1028626 11 Streptococcus pneumoniae 88.99 Streptococcus pneumoniae 1313 PRJEB2479 11 current na 60254 type Streptococcus pneumoniae 2015-07-28 15C 15C species Homo sapiens 2070 Streptococcus pneumoniae Streptococcus pneumoniae ERS022081 SC 2010-04-01 v1.2.4 2012-01-20T20:11:22.613 98.59 2113365 88.99 1313 2111 2024-02-05T16:31:03.000 2113387 60254 2113335 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001345375.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 21.9128 https://www.ncbi.nlm.nih.gov/nuccore/CIIM00000000.1 2012-01-16T15:10:28Z GCA_001345375.1 haploid public SMRU2571-sc-2011-01-27-1062784 85.7 3.02 70 2015-07-28T08:12:53 GCA_053203845.1 834929 41 6972_3#3 SMRU2571-sc-2011-01-27-1062784 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028626 1313 GCF_001345375.1 Generic.1.0 85.7 SRA GCF_001345375.1 category_na live 2018-03-09T09:53:05Z SMRU2571 PRJEB2479 GCF_001345375.1-RS_2026_01_20 SC SC 68 2018-03-09T09:53:05Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIIM01 2010-04-01 SMRU2571 2012-01-16T15:10:28Z Prokka current 68 SMRU2571-sc-2011-01-27-1062784 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CIIM01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU2571 species_match 98.71 SAMEA1028626 11 Streptococcus pneumoniae 88.99 Streptococcus pneumoniae 1313 PRJEB2479 11 current na Best-placed reference protein set; GeneMarkS-2+ 60254 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-20 15C 15C species Homo sapiens 2015 Streptococcus pneumoniae Streptococcus pneumoniae ERS022081 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-04-01 v1.2.4 2012-01-20T20:11:22.613 98.59 2113365 88.99 1313 2231 2024-02-05T16:31:03.000 2113387 60254 2113335 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 172 EBI 100 GCA_053203845.1 GCF_001345375.1-RS_2026_01_20 SLX Streptococcus pneumoniae GCF_001345375.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 21.9128 https://www.ncbi.nlm.nih.gov/nuccore/CIIM00000000.1 2012-01-16T15:10:28Z GCF_001345375.1 haploid public SMRU2571-sc-2011-01-27-1062784 85.7 3.02 70 2015-07-28T08:12:53 GCA_053203845.1 834929 44 6972_3#3 SMRU2571-sc-2011-01-27-1062784 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028626 1313 GCA_001345375.1 Generic.1.0 85.7 SRA GCA_001345375.1 category_na live 2018-03-09T09:53:05Z SMRU2571 PRJEB2479 Annotation submitted by SC SC SC 68 2018-03-09T09:53:05Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIIM01 2010-04-01 SMRU2571 6.10 2012-01-16T15:10:28Z Prokka current 68 SMRU2571-sc-2011-01-27-1062784 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CIIM01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU2571 species_match 98.71 SAMEA2521574 6 Streptococcus pneumoniae 92.35 Streptococcus pneumoniae 1313 PRJEB3084 10 current na 86337 type Streptococcus pneumoniae 2019-05-22 15BC 15BC species Homo sapiens 2132 Streptococcus pneumoniae Streptococcus pneumoniae ERS455114 SC 2012 v1.2.4 2014-09-17T09:08:13.273 98.84 2119506 92.35 1313 2179 Streptococcus pneumoniae 2024-02-06T15:55:06.000 2122332 59825 2119503 blood Homo sapiens Streptococcus pneumoniae IPD ST162 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900060535.2 type blood 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FHQT00000000.2 2014-09-16T09:22:33Z GCA_900060535.2 haploid public 2012214932-sc-1946866 89.2 0.62 59 2018-03-10T19:14:16 GCA_053203845.1 837769 47 13414_2#23 2012214932-sc-1946866 USA 13414_2#23 SAMEA2521574 1313 GCF_900060535.2 Generic.1.0 89.2 SRA GCF_900060535.2 category_na live 2019-04-18T15:39:23Z GPSC6 PRJEB3084 GCF_900060535.2-RS_2026_01_25 SC SC 47 1946866 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012214932 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQT02 2012 2245STDY5819540 2014-09-16T09:22:33Z Prokka current 47 2012214932-sc-1946866 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQT02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-22 GPSC6 species_match 98.75 SAMEA2521574 6 Streptococcus pneumoniae 92.35 Streptococcus pneumoniae 1313 PRJEB3084 10 current na Best-placed reference protein set; GeneMarkS-2+ 86337 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 15BC 15BC species Homo sapiens 2006 Streptococcus pneumoniae Streptococcus pneumoniae ERS455114 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:13.273 98.84 2119506 92.35 1313 2242 Streptococcus pneumoniae 2024-02-06T15:55:06.000 2122332 59825 2119503 blood Homo sapiens Streptococcus pneumoniae IPD 182 ST162 EBI 100 GCA_053203845.1 GCF_900060535.2-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900060535.2 type blood 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FHQT00000000.2 2014-09-16T09:22:33Z GCF_900060535.2 haploid public 2012214932-sc-1946866 89.2 0.62 59 2018-03-10T19:14:16 GCA_053203845.1 837769 54 13414_2#23 2012214932-sc-1946866 USA 13414_2#23 SAMEA2521574 1313 GCA_900060535.2 Generic.1.0 89.2 SRA GCA_900060535.2 category_na live 2019-04-18T15:39:23Z GPSC6 PRJEB3084 Annotation submitted by SC SC SC 47 1946866 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012214932 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQT02 2012 GPSC6 substr. ST162 6.10 2014-09-16T09:22:33Z Prokka current 47 2012214932-sc-1946866 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQT02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-22 GPSC6 species_match 98.75 SAMEA3431446 2 Streptococcus pneumoniae 90.46 Streptococcus pneumoniae PRJEB3084 2 na 617739 type Streptococcus pneumoniae 2019-05-14 16F 16F Homo sapiens 2082 Streptococcus pneumoniae Streptococcus pneumoniae ERS740731 SC 2000 2016-01-20T08:06:47.236 2127932 90.46 1313 2134 Streptococcus pneumoniae 2024-02-06T15:51:25.000 2127932 617739 2127932 NP swab Homo sapiens Carriage from large multi-isolate project ST2966 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901326555.1 type NP swab 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABBIX000000000.1 2016-01-19T09:16:43Z GCA_901326555.1 haploid public GPS_HK_49-sc-2296620 91.18 25 2018-03-10T20:15:35 GCA_001457635.1 841435 52 18090_2#47 GPS_HK_49-sc-2296620 China 18090_2#47 SAMEA3431446 1313 Generic.1.0 91.18 SRA category_na live 2019-04-18T15:32:15Z GPSC158 PRJEB3084 SC SC 25 2296620 2019-04-18T15:32:15Z 2016-01-19T00:00:00.000 HK_49 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABBIX01 2000 GPSC158 substr. ST2966 2016-01-19T09:16:43Z Prokka current 25 GPS_HK_49-sc-2296620 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABBIX01 Contig SOURCE_DATABASE_GENBANK China 2019-05-14 GPSC158 species_match 98.78 SAMEA3714061 3 Streptococcus pneumoniae 91.05 Streptococcus pneumoniae PRJEB3084 3 na 435493 type Streptococcus pneumoniae 2019-05-12 15BC 15BC Homo sapiens 2105 Streptococcus pneumoniae Streptococcus pneumoniae ERS1021210 SC 2009 2016-06-15T09:07:23.136 2111787 91.05 1313 2158 Streptococcus pneumoniae 2024-02-06T15:51:39.000 2111836 435493 2111787 NP swab Homo sapiens Carriage from large multi-isolate project ST3397 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901292095.1 type NP swab 98.58 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWHJ000000000.1 2016-06-14T13:33:04Z GCA_901292095.1 haploid public 41a98040-41bd-11e5-a83d-3c4a9275d6c6 87.63 22 2016-06-15T10:10:10.777 GCA_053203845.1 834586 53 19341_3#96 41a98040-41bd-11e5-a83d-3c4a9275d6c6 China 19341_3#96 SAMEA3714061 1313 Generic.1.0 87.63 SRA category_na live 2019-04-18T15:32:19Z GPSC152 PRJEB3084 SC SC 21 2377884 2019-04-18T15:32:19Z 2016-06-14T00:00:00.000 GPS_HK_417 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWHJ01 2009 GPSC152 substr. ST3397 2016-06-14T13:33:04Z Prokka current 21 41a98040-41bd-11e5-a83d-3c4a9275d6c6 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWHJ01 Scaffold SOURCE_DATABASE_GENBANK China 2019-05-12 GPSC152 species_match 98.58 SAMEA3353641 2 Streptococcus pneumoniae 91.84 Streptococcus pneumoniae PRJEB3084 3 suppressed na 487194 type Streptococcus pneumoniae 2019-05-12 15BC 15BC Homo sapiens 2080 Streptococcus pneumoniae Streptococcus pneumoniae ERS707996 SC 2010 2015-10-14T08:10:56.580 2107465 91.84 1313 2134 Streptococcus pneumoniae 2024-02-06T15:57:20.000 2107568 401056 2107464 NP Homo sapiens Carriage from large multi-isolate project ST12129 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901230335.1 type NP 98.55 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANEI000000000.1 2015-10-13T13:59:26Z GCA_901230335.1 haploid public GPS_ZA_carriage_SP1572-sc-2278243 91.68 19 2018-03-10T20:10:05 GCA_001457635.1 835743 54 17150_4#56 GPS_ZA_carriage_SP1572-sc-2278243 South Africa 17150_4#56 SAMEA3353641 1313 GCF_901230335.1 Generic.1.0 91.68 SRA GCF_901230335.1 category_na live 2019-04-18T15:56:57Z GPSC512 PRJEB3084 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SC SC 17 2278243 2019-04-18T15:56:57Z 2015-10-13T00:00:00.000 10299 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANEI01 2010 GPSC512 substr. ST12129 2015-10-13T13:59:26Z Prokka current 17 GPS_ZA_carriage_SP1572-sc-2278243 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANEI01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-12 GPSC512 species_match 98.55 SAMEA3353641 2 Streptococcus pneumoniae 91.84 Streptococcus pneumoniae PRJEB3084 3 current na Best-placed reference protein set; GeneMarkS-2+ 487194 type Streptococcus pneumoniae This record was removed by RefSeq staff. Please contact info@ncbi.nlm.nih.gov for further details. Reason: surveillance assembly 2019-05-23 15BC 15BC Homo sapiens 2030 Streptococcus pneumoniae Streptococcus pneumoniae ERS707996 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010 2015-10-14T08:10:56.580 2107465 91.84 1313 2274 Streptococcus pneumoniae 2024-02-06T15:57:20.000 2107568 401056 NP Homo sapiens Carriage from large multi-isolate project 188 ST12129 EBI 100 GCA_001457635.1 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SLX Streptococcus pneumoniae GCF_901230335.1 type NP 98.55 ERC000011 OK Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANEI000000000.1 2015-10-13T13:59:26Z GCF_901230335.1 haploid public GPS_ZA_carriage_SP1572-sc-2278243 91.68 19 2018-03-10T20:10:05 GCA_001457635.1 56 17150_4#56 GPS_ZA_carriage_SP1572-sc-2278243 South Africa 17150_4#56 SAMEA3353641 1313 GCA_901230335.1 Generic.1.0 91.68 SRA GCA_901230335.1 category_na live 2019-04-18T15:56:57Z GPSC512 PRJEB3084 Annotation submitted by SC SC SC 17 2278243 2019-04-18T15:56:57Z 2015-10-13T00:00:00.000 10299 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANEI01 2010 GPSC512 substr. ST12129 4.8 2015-10-13T13:59:26Z Prokka suppressed 17 GPS_ZA_carriage_SP1572-sc-2278243 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANEI01 Scaffold SOURCE_DATABASE_REFSEQ South Africa 2019-05-12 GPSC512 species_match 98.55 SAMEA2382588 6 Streptococcus pneumoniae 94.29 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 133976 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2053 Streptococcus pneumoniae Streptococcus pneumoniae ERS408913 SC 2006/2012 v1.2.4 2014-07-03T08:07:01.306 99.15 2078115 94.29 1313 2102 2024-02-06T06:56:50.000 2079882 104457 2078113 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900037455.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FCXR00000000.1 2014-07-02T15:07:58Z GCA_900037455.1 haploid public 2120296-sc-1869833 89.29 0.52 42 2015-08-10T19:42:10 GCA_053203845.1 822781 49 12673_6#43 2120296-sc-1869833 Netherlands 12673_6#43 SAMEA2382588 1313 GCF_900037455.1 Generic.1.0 89.29 SRA GCF_900037455.1 category_na live 2018-03-09T10:43:09Z 2842STDY5753128 PRJEB4909 GCF_900037455.1-RS_2026_01_11 SC SC 34 1869833 2018-03-09T10:43:09Z 2014-07-02T00:00:00.000 2120296 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCXR01 2006/2012 2842STDY5753128 2014-07-02T15:07:58Z Prokka current 34 2120296-sc-1869833 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCXR01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753128 species_match 98.84 SAMEA2382588 6 Streptococcus pneumoniae 94.29 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 133976 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1970 Streptococcus pneumoniae Streptococcus pneumoniae ERS408913 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-03T08:07:01.306 99.15 2078115 94.29 1313 2188 2024-02-06T06:56:50.000 2079882 104457 2078113 CSF Homo sapiens Streptococcus pneumoniae Disease 163 EBI 100 GCA_053203845.1 GCF_900037455.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900037455.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FCXR00000000.1 2014-07-02T15:07:58Z GCF_900037455.1 haploid public 2120296-sc-1869833 89.29 0.52 42 2015-08-10T19:42:10 GCA_053203845.1 822781 55 12673_6#43 2120296-sc-1869833 Netherlands 12673_6#43 SAMEA2382588 1313 GCA_900037455.1 Generic.1.0 89.29 SRA GCA_900037455.1 category_na live 2018-03-09T10:43:09Z 2842STDY5753128 PRJEB4909 Annotation submitted by SC SC SC 34 1869833 2018-03-09T10:43:09Z 2014-07-02T00:00:00.000 2120296 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCXR01 2006/2012 2842STDY5753128 6.10 2014-07-02T15:07:58Z Prokka current 34 2120296-sc-1869833 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCXR01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753128 species_match 98.84 SAMEA2203824 5 Streptococcus pneumoniae 93.32 Streptococcus pneumoniae 1313 PRJEB3084 7 current na 160192 type Streptococcus pneumoniae 2019-05-13 17F 17F species Homo sapiens 2031 Streptococcus pneumoniae Streptococcus pneumoniae ERS356328 SC 2009 v1.2.4 2014-02-28T18:05:45.156 98.54 2070973 93.32 1313 2076 Streptococcus pneumoniae 2024-02-06T15:54:48.000 2075291 99565 2070972 blood Homo sapiens Streptococcus pneumoniae Pneumonia ST392 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900033855.2 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 20.1716 https://www.ncbi.nlm.nih.gov/nuccore/FFSJ00000000.2 2014-02-18T09:19:59Z GCA_900033855.2 haploid public 2010216155-sc-2013-10-09T11:50:05Z-1712413 88.08 0.52 44 2015-08-10T19:05:35 GCA_053203845.1 818763 45 11679_1#20 2010216155-sc-2013-10-09T11:50:05Z-1712413 USA 11679_1#20 SAMEA2203824 1313 GCF_900033855.2 Generic.1.0 88.08 SRA GCF_900033855.2 category_na live 2019-04-18T15:39:18Z GPSC49 PRJEB3084 GCF_900033855.2-RS_2025_12_30 SC SC 26 1712413 2019-04-18T15:39:18Z 2014-02-18T00:00:00.000 2010216155 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFSJ02 2009 2245STDY5608963 2014-02-18T09:19:59Z Prokka current 26 2010216155-sc-2013-10-09T11:50:05Z-1712413 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFSJ02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC49 species_match 98.86 SAMEA2203824 5 Streptococcus pneumoniae 93.32 Streptococcus pneumoniae 1313 PRJEB3084 7 current na Best-placed reference protein set; GeneMarkS-2+ 160192 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-30 17F 17F species Homo sapiens 1936 Streptococcus pneumoniae Streptococcus pneumoniae ERS356328 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-02-28T18:05:45.156 98.54 2070973 93.32 1313 2152 Streptococcus pneumoniae 2024-02-06T15:54:48.000 2075291 99565 2070972 blood Homo sapiens Streptococcus pneumoniae Pneumonia 164 ST392 EBI 100 GCA_053203845.1 GCF_900033855.2-RS_2025_12_30 SLX Streptococcus pneumoniae GCF_900033855.2 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 20.1716 https://www.ncbi.nlm.nih.gov/nuccore/FFSJ00000000.2 2014-02-18T09:19:59Z GCF_900033855.2 haploid public 2010216155-sc-2013-10-09T11:50:05Z-1712413 88.08 0.52 44 2015-08-10T19:05:35 GCA_053203845.1 818763 52 11679_1#20 2010216155-sc-2013-10-09T11:50:05Z-1712413 USA 11679_1#20 SAMEA2203824 1313 GCA_900033855.2 Generic.1.0 88.08 SRA GCA_900033855.2 category_na live 2019-04-18T15:39:18Z GPSC49 PRJEB3084 Annotation submitted by SC SC SC 26 1712413 2019-04-18T15:39:18Z 2014-02-18T00:00:00.000 2010216155 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFSJ02 2009 GPSC49 substr. ST392 6.10 2014-02-18T09:19:59Z Prokka current 26 2010216155-sc-2013-10-09T11:50:05Z-1712413 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFSJ02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC49 species_match 98.86 SAMEA2382935 5 Streptococcus pneumoniae 93.72 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 131740 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2035 Streptococcus pneumoniae Streptococcus pneumoniae ERS409260 SC 2006/2012 v1.2.4 2014-07-17T08:09:24.200 99.1 2064097 93.72 1313 2082 2024-02-06T06:48:04.000 2065951 96482 2064097 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900027715.1 type blood 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FDMC00000000.1 2014-07-16T11:40:12Z GCA_900027715.1 haploid public 2080023_II-sc-1870184 88.15 0.33 40 2015-08-10T19:44:10 GCA_053203845.1 817086 47 12754_1#10 2080023_II-sc-1870184 Netherlands 12754_1#10 SAMEA2382935 1313 GCF_900027715.1 Generic.1.0 88.15 SRA GCF_900027715.1 category_na live 2018-03-09T10:41:47Z 2842STDY5753479 PRJEB4909 GCF_900027715.1-RS_2026_01_25 SC SC 33 1870184 2018-03-09T10:41:47Z 2014-07-16T00:00:00.000 2080023_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDMC01 2006/2012 2842STDY5753479 2014-07-16T11:40:12Z Prokka current 33 2080023_II-sc-1870184 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDMC01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753479 species_match 98.83 SAMEA2382935 5 Streptococcus pneumoniae 93.72 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 131740 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1928 Streptococcus pneumoniae Streptococcus pneumoniae ERS409260 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:24.200 99.1 2064097 93.72 1313 2151 2024-02-06T06:48:04.000 2065951 96482 2064097 blood Homo sapiens Streptococcus pneumoniae Disease 169 EBI 100 GCA_053203845.1 GCF_900027715.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900027715.1 type blood 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FDMC00000000.1 2014-07-16T11:40:12Z GCF_900027715.1 haploid public 2080023_II-sc-1870184 88.15 0.33 40 2015-08-10T19:44:10 GCA_053203845.1 817086 54 12754_1#10 2080023_II-sc-1870184 Netherlands 12754_1#10 SAMEA2382935 1313 GCA_900027715.1 Generic.1.0 88.15 SRA GCA_900027715.1 category_na live 2018-03-09T10:41:47Z 2842STDY5753479 PRJEB4909 Annotation submitted by SC SC SC 33 1870184 2018-03-09T10:41:47Z 2014-07-16T00:00:00.000 2080023_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDMC01 2006/2012 2842STDY5753479 6.10 2014-07-16T11:40:12Z Prokka current 33 2080023_II-sc-1870184 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDMC01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753479 species_match 98.83 SAMEA2239129 5 Streptococcus pneumoniae 93.92 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 177200 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2029 Streptococcus pneumoniae Streptococcus pneumoniae ERS367941 SC 2006/2012 v1.2.4 2014-05-07T08:35:22.610 99.15 2070550 93.92 1313 2074 2024-02-06T05:04:00.000 2073652 93970 2070549 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900021185.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FDQP00000000.1 2014-03-18T09:35:30Z GCA_900021185.1 haploid public 2000391-sc-2013-11-05T12:08:24Z-1750500 88.62 0.52 35 2018-03-10T18:56:58 GCA_053203845.1 818890 45 11860_7#90 2000391-sc-2013-11-05T12:08:24Z-1750500 Netherlands 11860_7#90 SAMEA2239129 1313 GCF_900021185.1 Generic.1.0 88.62 SRA GCF_900021185.1 category_na live 2018-03-09T10:27:38Z 2842STDY5644511 PRJEB4909 GCF_900021185.1-RS_2026_01_04 SC SC 23 1750500 2018-03-09T10:27:38Z 2014-03-18T00:00:00.000 2000391 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDQP01 2006/2012 2842STDY5644511 2014-03-18T09:35:30Z Prokka current 23 2000391-sc-2013-11-05T12:08:24Z-1750500 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDQP01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644511 species_match 98.86 SAMEA2239129 5 Streptococcus pneumoniae 93.92 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 177200 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-04 species Homo sapiens 1942 Streptococcus pneumoniae Streptococcus pneumoniae ERS367941 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:22.610 99.15 2070550 93.92 1313 2156 2024-02-06T05:04:00.000 2073652 93970 2070549 CSF Homo sapiens Streptococcus pneumoniae Disease 163 EBI 100 GCA_053203845.1 GCF_900021185.1-RS_2026_01_04 SLX Streptococcus pneumoniae GCF_900021185.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FDQP00000000.1 2014-03-18T09:35:30Z GCF_900021185.1 haploid public 2000391-sc-2013-11-05T12:08:24Z-1750500 88.62 0.52 35 2018-03-10T18:56:58 GCA_053203845.1 818890 51 11860_7#90 2000391-sc-2013-11-05T12:08:24Z-1750500 Netherlands 11860_7#90 SAMEA2239129 1313 GCA_900021185.1 Generic.1.0 88.62 SRA GCA_900021185.1 category_na live 2018-03-09T10:27:38Z 2842STDY5644511 PRJEB4909 Annotation submitted by SC SC SC 23 1750500 2018-03-09T10:27:38Z 2014-03-18T00:00:00.000 2000391 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDQP01 2006/2012 2842STDY5644511 6.10 2014-03-18T09:35:30Z Prokka current 23 2000391-sc-2013-11-05T12:08:24Z-1750500 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDQP01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644511 species_match 98.86 SAMEA1029367 8 Streptococcus pneumoniae 91.6 Streptococcus pneumoniae 1313 PRJEB2480 8 current na 80030 type Streptococcus pneumoniae 2015-07-14 17F 17F species Homo sapiens 2010 Streptococcus pneumoniae Streptococcus pneumoniae ERS022462 SC 2010-08-16 v1.2.4 2012-02-09T20:48:08.823 99.1 2055407 91.6 1313 2050 2024-02-06T09:02:30.000 2055407 80030 2055380 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001103065.1 type nasopharynx 98.88 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CMGM00000000.1 2012-02-07T17:03:03Z GCA_001103065.1 haploid public SMRU2952-sc-2011-01-27-1063165 85.8 0.83 48 2015-07-28T08:13:15 GCA_053203845.1 815717 40 7038_4#24 SMRU2952-sc-2011-01-27-1063165 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029367 1313 GCF_001103065.1 Generic.1.0 85.8 SRA GCF_001103065.1 category_na live 2018-03-09T11:44:53Z SMRU2952 PRJEB2480 GCF_001103065.1-RS_2026_01_18 SC SC 48 2018-03-09T11:44:53Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMGM01 2010-08-16 SMRU2952 2012-02-07T17:03:03Z Prokka current 48 SMRU2952-sc-2011-01-27-1063165 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMGM01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2952 species_match 98.88 SAMEA1029367 8 Streptococcus pneumoniae 91.6 Streptococcus pneumoniae 1313 PRJEB2480 8 current na Best-placed reference protein set; GeneMarkS-2+ 80030 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 17F 17F species Homo sapiens 1941 Streptococcus pneumoniae Streptococcus pneumoniae ERS022462 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-08-16 v1.2.4 2012-02-09T20:48:08.823 99.1 2055407 91.6 1313 2150 2024-02-06T09:02:30.000 2055407 80030 2055380 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 166 EBI 100 GCA_053203845.1 GCF_001103065.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001103065.1 type nasopharynx 98.88 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CMGM00000000.1 2012-02-07T17:03:03Z GCF_001103065.1 haploid public SMRU2952-sc-2011-01-27-1063165 85.8 0.83 48 2015-07-28T08:13:15 GCA_053203845.1 815717 43 7038_4#24 SMRU2952-sc-2011-01-27-1063165 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029367 1313 GCA_001103065.1 Generic.1.0 85.8 SRA GCA_001103065.1 category_na live 2018-03-09T11:44:53Z SMRU2952 PRJEB2480 Annotation submitted by SC SC SC 48 2018-03-09T11:44:53Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMGM01 2010-08-16 SMRU2952 6.10 2012-02-07T17:03:03Z Prokka current 48 SMRU2952-sc-2011-01-27-1063165 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMGM01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2952 species_match 98.88 SAMEA1029394 8 Streptococcus pneumoniae 91.85 Streptococcus pneumoniae 1313 PRJEB2480 8 current na 80030 type Streptococcus pneumoniae 2015-07-14 17F 17F species Homo sapiens 2006 Streptococcus pneumoniae Streptococcus pneumoniae ERS022592 SC 2010-10-04 v1.2.4 2012-02-03T19:18:45.553 99.1 2053331 91.85 1313 2046 2024-02-06T09:04:20.000 2053331 80030 2053324 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001152385.1 type nasopharynx 98.87 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CMLM00000000.1 2012-01-31T11:46:17Z GCA_001152385.1 haploid public SMRU3082-sc-2011-01-27-1063295 85.94 0.52 51 2015-07-28T08:13:11 GCA_053203845.1 814751 40 7054_6#10 SMRU3082-sc-2011-01-27-1063295 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029394 1313 GCF_001152385.1 Generic.1.0 85.94 SRA GCF_001152385.1 category_na live 2018-03-09T12:11:46Z SMRU3082 PRJEB2480 GCF_001152385.1-RS_2026_01_13 SC SC 51 2018-03-09T12:11:46Z 2012-01-31T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMLM01 2010-10-04 SMRU3082 2012-01-31T11:46:17Z Prokka current 51 SMRU3082-sc-2011-01-27-1063295 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMLM01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU3082 species_match 98.87 SAMEA1029394 8 Streptococcus pneumoniae 91.85 Streptococcus pneumoniae 1313 PRJEB2480 8 current na Best-placed reference protein set; GeneMarkS-2+ 80030 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-13 17F 17F species Homo sapiens 1942 Streptococcus pneumoniae Streptococcus pneumoniae ERS022592 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-10-04 v1.2.4 2012-02-03T19:18:45.553 99.1 2053331 91.85 1313 2144 2024-02-06T09:04:20.000 2053331 80030 2053324 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 160 EBI 100 GCA_053203845.1 GCF_001152385.1-RS_2026_01_13 SLX Streptococcus pneumoniae GCF_001152385.1 type nasopharynx 98.87 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CMLM00000000.1 2012-01-31T11:46:17Z GCF_001152385.1 haploid public SMRU3082-sc-2011-01-27-1063295 85.94 0.52 51 2015-07-28T08:13:11 GCA_053203845.1 814751 42 7054_6#10 SMRU3082-sc-2011-01-27-1063295 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029394 1313 GCA_001152385.1 Generic.1.0 85.94 SRA GCA_001152385.1 category_na live 2018-03-09T12:11:46Z SMRU3082 PRJEB2480 Annotation submitted by SC SC SC 51 2018-03-09T12:11:46Z 2012-01-31T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMLM01 2010-10-04 SMRU3082 6.10 2012-01-31T11:46:17Z Prokka current 51 SMRU3082-sc-2011-01-27-1063295 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMLM01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU3082 species_match 98.87 SAMEA2238772 7 Streptococcus pneumoniae 93.71 Streptococcus pneumoniae 1313 PRJEB4909 10 current na 119292 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2021 Streptococcus pneumoniae Streptococcus pneumoniae ERS367584 SC 2006/2012 v1.2.4 2014-05-07T08:34:56.710 99.31 2072298 93.71 1313 2067 2024-02-06T05:04:28.000 2076622 79327 2072298 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900022775.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FCQA00000000.1 2014-03-04T09:18:59Z GCA_900022775.1 haploid public 2100507-sc-2013-11-05T12:02:11Z-1750135 88.49 0.52 51 2018-03-10T18:56:42 GCA_053203845.1 819329 46 11822_8#48 2100507-sc-2013-11-05T12:02:11Z-1750135 Netherlands 11822_8#48 SAMEA2238772 1313 GCF_900022775.1 Generic.1.0 88.49 SRA GCF_900022775.1 category_na live 2018-03-09T10:27:42Z 2842STDY5644146 PRJEB4909 GCF_900022775.1-RS_2026_01_25 SC SC 35 1750135 2018-03-09T10:27:42Z 2014-03-04T00:00:00.000 2100507 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCQA01 2006/2012 2842STDY5644146 2014-03-04T09:18:59Z Prokka current 35 2100507-sc-2013-11-05T12:02:11Z-1750135 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCQA01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644146 species_match 98.86 SAMEA2238772 7 Streptococcus pneumoniae 93.71 Streptococcus pneumoniae 1313 PRJEB4909 10 current na Best-placed reference protein set; GeneMarkS-2+ 119292 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1949 Streptococcus pneumoniae Streptococcus pneumoniae ERS367584 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:56.710 99.31 2072298 93.71 1313 2169 2024-02-06T05:04:28.000 2076622 79327 2072298 CSF Homo sapiens Streptococcus pneumoniae Disease 168 EBI 100 GCA_053203845.1 GCF_900022775.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900022775.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FCQA00000000.1 2014-03-04T09:18:59Z GCF_900022775.1 haploid public 2100507-sc-2013-11-05T12:02:11Z-1750135 88.49 0.52 51 2018-03-10T18:56:42 GCA_053203845.1 819329 52 11822_8#48 2100507-sc-2013-11-05T12:02:11Z-1750135 Netherlands 11822_8#48 SAMEA2238772 1313 GCA_900022775.1 Generic.1.0 88.49 SRA GCA_900022775.1 category_na live 2018-03-09T10:27:42Z 2842STDY5644146 PRJEB4909 Annotation submitted by SC SC SC 35 1750135 2018-03-09T10:27:42Z 2014-03-04T00:00:00.000 2100507 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCQA01 2006/2012 2842STDY5644146 6.10 2014-03-04T09:18:59Z Prokka current 35 2100507-sc-2013-11-05T12:02:11Z-1750135 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCQA01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644146 species_match 98.86 SAMEA1463226 10 Streptococcus pneumoniae 93.41 Streptococcus pneumoniae 1313 PRJEB2632 10 current na 74364 type Streptococcus pneumoniae 2015-07-28 17F 17F species Homo sapiens 1954 Streptococcus pneumoniae Streptococcus pneumoniae ERS070143 SC 2007 v1.2.4 2012-05-15T12:05:32.740 99.05 2026822 93.41 1313 1985 2024-02-05T18:12:23.000 9LUM5 2026822 74364 2026822 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001301975.2 type nasopharynx 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 51.1363 https://www.ncbi.nlm.nih.gov/nuccore/CFRB00000000.2 2012-05-09T10:03:16Z GCA_001301975.2 haploid public NP7026-sc-2011-11-08T10:09:07Z-1298511 89.69 0.52 133 2015-09-10T08:20:41 9LUM5 GCA_001457635.1 804079 31 7553_4#36 NP7026-sc-2011-11-08T10:09:07Z-1298511 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463226 1313 GCF_001301975.1 Generic.1.0 89.69 SRA GCF_001301975.1 category_na live 2018-03-09T09:54:37Z NP7026 PRJEB2632 GCF_001301975.1-RS_2025_09_15 SC SC 133 9LUM5 2018-03-09T09:54:37Z 2012-05-09T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFRB02 2007 NP7026 2012-05-09T10:03:16Z Velvet current 133 NP7026-sc-2011-11-08T10:09:07Z-1298511 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CFRB02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-28 NP7026 species_match 98.78 SAMEA1463226 10 Streptococcus pneumoniae 93.41 Streptococcus pneumoniae 1313 PRJEB2632 10 current na Best-placed reference protein set; GeneMarkS-2+ 74364 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-15 17F 17F species Homo sapiens 1894 Streptococcus pneumoniae Streptococcus pneumoniae ERS070143 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-05-15T12:05:32.740 99.05 2026822 93.41 1313 2112 2024-02-05T18:12:23.000 9LUM5 2026822 74364 2026822 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 164 EBI 100 GCA_001457635.1 GCF_001301975.1-RS_2025_09_15 SLX Streptococcus pneumoniae GCF_001301975.1 type nasopharynx 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 51.1363 https://www.ncbi.nlm.nih.gov/nuccore/CFRB00000000.2 2012-05-09T10:03:16Z GCF_001301975.1 haploid public NP7026-sc-2011-11-08T10:09:07Z-1298511 89.69 0.52 133 2015-09-10T08:20:41 9LUM5 GCA_001457635.1 804079 54 7553_4#36 NP7026-sc-2011-11-08T10:09:07Z-1298511 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463226 1313 GCA_001301975.2 Generic.1.0 89.69 SRA GCA_001301975.2 category_na live 2018-03-09T09:54:37Z NP7026 PRJEB2632 Annotation submitted by SC SC SC 133 9LUM5 2018-03-09T09:54:37Z 2012-05-09T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFRB02 2007 NP7026 6.10 2012-05-09T10:03:16Z Velvet current 133 NP7026-sc-2011-11-08T10:09:07Z-1298511 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CFRB02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-28 NP7026 species_match 98.78 SAMEA2382556 6 Streptococcus pneumoniae 93.59 Streptococcus pneumoniae 1313 PRJEB4909 11 current na 115979 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2034 Streptococcus pneumoniae Streptococcus pneumoniae ERS408881 SC 2006/2012 v1.2.4 2014-07-03T08:06:59.680 99.1 2063219 93.59 1313 2082 2024-02-06T06:43:44.000 2067583 70007 2063216 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900029995.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FCVA00000000.1 2014-07-02T15:07:58Z GCA_900029995.1 haploid public 2110185-sc-1869801 88.0 0.33 51 2015-08-10T19:42:09 GCA_053203845.1 816704 48 12673_6#11 2110185-sc-1869801 Netherlands 12673_6#11 SAMEA2382556 1313 GCF_900029995.1 Generic.1.0 88.0 SRA GCF_900029995.1 category_na live 2018-03-09T10:40:57Z 2842STDY5753096 PRJEB4909 GCF_900029995.1-RS_2025_12_21 SC SC 35 1869801 2018-03-09T10:40:57Z 2014-07-02T00:00:00.000 2110185 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCVA01 2006/2012 2842STDY5753096 2014-07-02T15:07:58Z Prokka current 35 2110185-sc-1869801 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCVA01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753096 species_match 98.83 SAMEA2382556 6 Streptococcus pneumoniae 93.59 Streptococcus pneumoniae 1313 PRJEB4909 11 current na Best-placed reference protein set; GeneMarkS-2+ 115979 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-21 species Homo sapiens 1932 Streptococcus pneumoniae Streptococcus pneumoniae ERS408881 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-03T08:06:59.680 99.1 2063219 93.59 1313 2150 2024-02-06T06:43:44.000 2067583 70007 2063216 CSF Homo sapiens Streptococcus pneumoniae Disease 164 EBI 100 GCA_053203845.1 GCF_900029995.1-RS_2025_12_21 SLX Streptococcus pneumoniae GCF_900029995.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/FCVA00000000.1 2014-07-02T15:07:58Z GCF_900029995.1 haploid public 2110185-sc-1869801 88.0 0.33 51 2015-08-10T19:42:09 GCA_053203845.1 816704 54 12673_6#11 2110185-sc-1869801 Netherlands 12673_6#11 SAMEA2382556 1313 GCA_900029995.1 Generic.1.0 88.0 SRA GCA_900029995.1 category_na live 2018-03-09T10:40:57Z 2842STDY5753096 PRJEB4909 Annotation submitted by SC SC SC 35 1869801 2018-03-09T10:40:57Z 2014-07-02T00:00:00.000 2110185 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCVA01 2006/2012 2842STDY5753096 6.10 2014-07-02T15:07:58Z Prokka current 35 2110185-sc-1869801 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCVA01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753096 species_match 98.83 SAMEA2335946 7 Streptococcus pneumoniae 91.87 Streptococcus pneumoniae 1313 PRJEB3084 9 current na 116342 type Streptococcus pneumoniae 2019-05-15 16F 16F species Homo sapiens 2040 Streptococcus pneumoniae Streptococcus pneumoniae ERS394140 SC 2009 v1.2.4 2014-05-20T08:07:30.286 98.64 2074826 91.87 1313 2087 Streptococcus pneumoniae 2024-02-06T15:54:53.000 2076672 68938 2074826 blood Homo sapiens Streptococcus pneumoniae IPD ST3157 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900053985.2 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 24.1214 https://www.ncbi.nlm.nih.gov/nuccore/FHIX00000000.2 2014-05-19T10:21:07Z GCA_900053985.2 haploid public 2010206726-sc-1810874 86.86 0.31 50 2015-08-10T19:29:21 GCA_053203845.1 820281 47 12291_4#14 2010206726-sc-1810874 USA 12291_4#14 SAMEA2335946 1313 GCF_900053985.2 Generic.1.0 86.86 SRA GCF_900053985.2 category_na live 2019-04-18T15:39:20Z GPSC135 PRJEB3084 GCF_900053985.2-RS_2026_01_24 SC SC 43 1810874 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2010206726 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHIX02 2009 2245STDY5699039 2014-05-19T10:21:07Z Prokka current 43 2010206726-sc-1810874 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHIX02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-15 GPSC135 species_match 98.86 SAMEA2335946 7 Streptococcus pneumoniae 91.87 Streptococcus pneumoniae 1313 PRJEB3084 9 current na Best-placed reference protein set; GeneMarkS-2+ 116342 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 16F 16F species Homo sapiens 1940 Streptococcus pneumoniae Streptococcus pneumoniae ERS394140 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-05-20T08:07:30.286 98.64 2074826 91.87 1313 2168 Streptococcus pneumoniae 2024-02-06T15:54:53.000 2076672 68938 2074826 blood Homo sapiens Streptococcus pneumoniae IPD 175 ST3157 EBI 100 GCA_053203845.1 GCF_900053985.2-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_900053985.2 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 24.1214 https://www.ncbi.nlm.nih.gov/nuccore/FHIX00000000.2 2014-05-19T10:21:07Z GCF_900053985.2 haploid public 2010206726-sc-1810874 86.86 0.31 50 2015-08-10T19:29:21 GCA_053203845.1 820281 53 12291_4#14 2010206726-sc-1810874 USA 12291_4#14 SAMEA2335946 1313 GCA_900053985.2 Generic.1.0 86.86 SRA GCA_900053985.2 category_na live 2019-04-18T15:39:20Z GPSC135 PRJEB3084 Annotation submitted by SC SC SC 43 1810874 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2010206726 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHIX02 2009 GPSC135 substr. ST3157 6.10 2014-05-19T10:21:07Z Prokka current 43 2010206726-sc-1810874 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHIX02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-15 GPSC135 species_match 98.86 SAMEA1025253 8 Streptococcus pneumoniae 89.75 Streptococcus pneumoniae 1313 PRJEB2395 8 current na 99613 type Streptococcus pneumoniae 2015-07-17 17F 17F species Homo sapiens 2055 Streptococcus pneumoniae Streptococcus pneumoniae ERS020821 SC 2009-03-04 v1.2.4 2012-01-20T19:56:54.516 99.1 2094103 89.75 1313 2094 2024-02-05T16:13:36.000 2094114 99613 2094080 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001098545.1 type nasopharynx 98.88 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CRHW00000000.1 2011-11-15T17:01:00Z GCA_001098545.1 haploid public SMRU1311-sc-2011-01-27-1061524 85.65 2.45 52 2015-07-28T08:11:36 GCA_053203845.1 831833 39 6736_8#15 SMRU1311-sc-2011-01-27-1061524 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025253 1313 GCF_001098545.1 Generic.1.0 85.65 SRA GCF_001098545.1 category_na live 2018-03-09T09:52:52Z SMRU1311 PRJEB2395 GCF_001098545.1-RS_2026_01_22 SC SC 51 2018-03-09T09:52:52Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRHW01 2009-03-04 SMRU1311 2011-11-15T17:01:00Z Prokka current 51 SMRU1311-sc-2011-01-27-1061524 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRHW01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1311 species_match 98.88 SAMEA1025253 8 Streptococcus pneumoniae 89.75 Streptococcus pneumoniae 1313 PRJEB2395 8 current na Best-placed reference protein set; GeneMarkS-2+ 99613 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 17F 17F species Homo sapiens 1985 Streptococcus pneumoniae Streptococcus pneumoniae ERS020821 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-04 v1.2.4 2012-01-20T19:56:54.516 99.1 2094103 89.75 1313 2201 2024-02-05T16:13:36.000 2094114 99613 2094080 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 175 EBI 100 GCA_053203845.1 GCF_001098545.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_001098545.1 type nasopharynx 98.88 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CRHW00000000.1 2011-11-15T17:01:00Z GCF_001098545.1 haploid public SMRU1311-sc-2011-01-27-1061524 85.65 2.45 52 2015-07-28T08:11:36 GCA_053203845.1 831833 41 6736_8#15 SMRU1311-sc-2011-01-27-1061524 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025253 1313 GCA_001098545.1 Generic.1.0 85.65 SRA GCA_001098545.1 category_na live 2018-03-09T09:52:52Z SMRU1311 PRJEB2395 Annotation submitted by SC SC SC 51 2018-03-09T09:52:52Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRHW01 2009-03-04 SMRU1311 6.10 2011-11-15T17:01:00Z Prokka current 51 SMRU1311-sc-2011-01-27-1061524 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRHW01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1311 species_match 98.88 SAMEA1025496 7 Streptococcus pneumoniae 92.64 Streptococcus pneumoniae 1313 PRJEB2395 8 current na 101630 type Streptococcus pneumoniae 2015-07-17 17F 17F species Homo sapiens 2008 Streptococcus pneumoniae Streptococcus pneumoniae ERS020693 SC 2009-01-21 v1.2.4 2012-01-20T19:55:30.573 99.15 2042698 92.64 1313 2051 2024-02-05T16:33:23.000 2042752 97205 2042684 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001122545.1 type nasopharynx 98.77 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CRPD00000000.1 2011-11-15T17:01:01Z GCA_001122545.1 haploid public SMRU1183-sc-2011-01-27-1061396 86.23 0.68 49 2015-07-28T08:11:29 GCA_053203845.1 810318 43 6755_6#7 SMRU1183-sc-2011-01-27-1061396 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025496 1313 GCF_001122545.1 Generic.1.0 86.23 SRA GCF_001122545.1 category_na live 2018-03-09T09:53:07Z SMRU1183 PRJEB2395 GCF_001122545.1-RS_2026_01_19 SC SC 45 2018-03-09T09:53:07Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRPD01 2009-01-21 SMRU1183 2011-11-15T17:01:01Z Prokka current 45 SMRU1183-sc-2011-01-27-1061396 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRPD01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1183 species_match 98.77 SAMEA1025496 7 Streptococcus pneumoniae 92.64 Streptococcus pneumoniae 1313 PRJEB2395 8 current na Best-placed reference protein set; GeneMarkS-2+ 101630 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 17F 17F species Homo sapiens 1930 Streptococcus pneumoniae Streptococcus pneumoniae ERS020693 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-01-21 v1.2.4 2012-01-20T19:55:30.573 99.15 2042698 92.64 1313 2142 2024-02-05T16:33:23.000 2042752 97205 2042684 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 166 EBI 100 GCA_053203845.1 GCF_001122545.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001122545.1 type nasopharynx 98.77 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CRPD00000000.1 2011-11-15T17:01:01Z GCF_001122545.1 haploid public SMRU1183-sc-2011-01-27-1061396 86.23 0.68 49 2015-07-28T08:11:29 GCA_053203845.1 810318 46 6755_6#7 SMRU1183-sc-2011-01-27-1061396 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025496 1313 GCA_001122545.1 Generic.1.0 86.23 SRA GCA_001122545.1 category_na live 2018-03-09T09:53:07Z SMRU1183 PRJEB2395 Annotation submitted by SC SC SC 45 2018-03-09T09:53:07Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRPD01 2009-01-21 SMRU1183 6.10 2011-11-15T17:01:01Z Prokka current 45 SMRU1183-sc-2011-01-27-1061396 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRPD01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1183 species_match 98.77 SAMEA1025810 7 Streptococcus pneumoniae 91.61 Streptococcus pneumoniae 1313 PRJEB2397 7 current na 90652 type Streptococcus pneumoniae 2015-07-13 17F 17F species Homo sapiens 2012 Streptococcus pneumoniae Streptococcus pneumoniae ERS021715 SC 2009-12-07 v1.2.4 2012-01-20T20:07:25.793 99.1 2056165 91.61 1313 2050 2024-02-06T09:03:12.000 2056165 90652 2056135 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001128045.1 type nasopharynx 98.87 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CLII00000000.1 2012-01-05T09:56:37Z GCA_001128045.1 haploid public SMRU2206-sc-2011-01-27-1062419 85.84 0.52 54 2015-07-28T08:12:31 GCA_053203845.1 816004 38 6925_6#22 SMRU2206-sc-2011-01-27-1062419 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025810 1313 GCF_001128045.1 Generic.1.0 85.84 SRA GCF_001128045.1 category_na live 2018-03-09T11:54:03Z SMRU2206 PRJEB2397 GCF_001128045.1-RS_2026_01_19 SC SC 54 2018-03-09T11:54:03Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLII01 2009-12-07 SMRU2206 2012-01-05T09:56:37Z Prokka current 54 SMRU2206-sc-2011-01-27-1062419 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLII01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2206 species_match 98.87 SAMEA1025810 7 Streptococcus pneumoniae 91.61 Streptococcus pneumoniae 1313 PRJEB2397 7 current na Best-placed reference protein set; GeneMarkS-2+ 90652 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 17F 17F species Homo sapiens 1934 Streptococcus pneumoniae Streptococcus pneumoniae ERS021715 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-12-07 v1.2.4 2012-01-20T20:07:25.793 99.1 2056165 91.61 1313 2147 2024-02-06T09:03:12.000 2056165 90652 2056135 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 172 EBI 100 GCA_053203845.1 GCF_001128045.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001128045.1 type nasopharynx 98.87 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CLII00000000.1 2012-01-05T09:56:37Z GCF_001128045.1 haploid public SMRU2206-sc-2011-01-27-1062419 85.84 0.52 54 2015-07-28T08:12:31 GCA_053203845.1 816004 41 6925_6#22 SMRU2206-sc-2011-01-27-1062419 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025810 1313 GCA_001128045.1 Generic.1.0 85.84 SRA GCA_001128045.1 category_na live 2018-03-09T11:54:03Z SMRU2206 PRJEB2397 Annotation submitted by SC SC SC 54 2018-03-09T11:54:03Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLII01 2009-12-07 SMRU2206 6.10 2012-01-05T09:56:37Z Prokka current 54 SMRU2206-sc-2011-01-27-1062419 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLII01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2206 species_match 98.87 SAMEA1025395 6 Streptococcus pneumoniae 90.54 Streptococcus pneumoniae 1313 PRJEB2395 6 current na 83656 type Streptococcus pneumoniae 2015-07-17 17F 17F species Homo sapiens 2050 Streptococcus pneumoniae Streptococcus pneumoniae ERS020919 SC 2009-04-02 v1.2.4 2012-01-20T19:57:58.020 99.1 2080072 90.54 1313 2089 2024-02-06T09:04:40.000 2080093 83656 2080053 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001120265.1 type nasopharynx 98.87 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CQVN00000000.1 2011-11-15T09:28:17Z GCA_001120265.1 haploid public SMRU1409-sc-2011-01-27-1061622 85.83 1.82 46 2015-07-28T08:11:40 GCA_053203845.1 825734 39 6710_8#17 SMRU1409-sc-2011-01-27-1061622 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025395 1313 GCF_001120265.1 Generic.1.0 85.83 SRA GCF_001120265.1 category_na live 2018-03-09T12:18:47Z SMRU1409 PRJEB2395 GCF_001120265.1-RS_2026_01_18 SC SC 44 2018-03-09T12:18:47Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQVN01 2009-04-02 SMRU1409 2011-11-15T09:28:17Z Prokka current 44 SMRU1409-sc-2011-01-27-1061622 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQVN01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1409 species_match 98.87 SAMEA1025395 6 Streptococcus pneumoniae 90.54 Streptococcus pneumoniae 1313 PRJEB2395 6 current na Best-placed reference protein set; GeneMarkS-2+ 83656 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 17F 17F species Homo sapiens 1975 Streptococcus pneumoniae Streptococcus pneumoniae ERS020919 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-02 v1.2.4 2012-01-20T19:57:58.020 99.1 2080072 90.54 1313 2184 2024-02-06T09:04:40.000 2080093 83656 2080053 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 167 EBI 100 GCA_053203845.1 GCF_001120265.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001120265.1 type nasopharynx 98.87 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CQVN00000000.1 2011-11-15T09:28:17Z GCF_001120265.1 haploid public SMRU1409-sc-2011-01-27-1061622 85.83 1.82 46 2015-07-28T08:11:40 GCA_053203845.1 825734 42 6710_8#17 SMRU1409-sc-2011-01-27-1061622 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025395 1313 GCA_001120265.1 Generic.1.0 85.83 SRA GCA_001120265.1 category_na live 2018-03-09T12:18:47Z SMRU1409 PRJEB2395 Annotation submitted by SC SC SC 44 2018-03-09T12:18:47Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQVN01 2009-04-02 SMRU1409 6.10 2011-11-15T09:28:17Z Prokka current 44 SMRU1409-sc-2011-01-27-1061622 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQVN01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1409 species_match 98.87 SAMEA1024096 9 Streptococcus pneumoniae 92.0 Streptococcus pneumoniae 1313 PRJEB2357 9 current na 79833 type Streptococcus pneumoniae 2015-07-28 17F 17F species Homo sapiens 2011 Streptococcus pneumoniae Streptococcus pneumoniae ERS019330 SC 2008-03-11 v1.2.4 2012-01-20T19:42:55.250 98.78 2050720 92.0 1313 2057 2024-02-06T09:04:04.000 2050771 79833 2050691 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001335855.1 type nasopharynx 98.86 OK 39.5 Streptococcus pneumoniae 31.4577 https://www.ncbi.nlm.nih.gov/nuccore/CHOJ00000000.1 2011-10-18T09:14:38Z GCA_001335855.1 haploid public SMRU172-sc-2011-01-27-1060361 85.97 0.52 51 2016-01-29T08:05:27 GCA_053203845.1 813704 46 6649_8#4 SMRU172-sc-2011-01-27-1060361 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024096 1313 GCF_001335855.1 Generic.1.0 85.97 SRA GCF_001335855.1 category_na live 2018-03-09T12:07:28Z SMRU172 PRJEB2357 GCF_001335855.1-RS_2026_01_18 SC SC 49 2018-03-09T12:07:28Z 2011-10-18T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHOJ01 2008-03-11 17F 2011-10-18T09:14:38Z Prokka current 49 SMRU172-sc-2011-01-27-1060361 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHOJ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU172 species_match 98.86 SAMEA1024096 9 Streptococcus pneumoniae 92.0 Streptococcus pneumoniae 1313 PRJEB2357 9 current na Best-placed reference protein set; GeneMarkS-2+ 79833 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 17F 17F species Homo sapiens 1932 Streptococcus pneumoniae Streptococcus pneumoniae ERS019330 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-03-11 v1.2.4 2012-01-20T19:42:55.250 98.78 2050720 92.0 1313 2148 2024-02-06T09:04:04.000 2050771 79833 2050691 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 168 EBI 100 GCA_053203845.1 GCF_001335855.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001335855.1 type nasopharynx 98.86 OK 39.5 Streptococcus pneumoniae 31.4577 https://www.ncbi.nlm.nih.gov/nuccore/CHOJ00000000.1 2011-10-18T09:14:38Z GCF_001335855.1 haploid public SMRU172-sc-2011-01-27-1060361 85.97 0.52 51 2016-01-29T08:05:27 GCA_053203845.1 813704 48 6649_8#4 SMRU172-sc-2011-01-27-1060361 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024096 1313 GCA_001335855.1 Generic.1.0 85.97 SRA GCA_001335855.1 category_na live 2018-03-09T12:07:28Z SMRU172 PRJEB2357 Annotation submitted by SC SC SC 49 2018-03-09T12:07:28Z 2011-10-18T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHOJ01 2008-03-11 SMRU172 6.10 2011-10-18T09:14:38Z Prokka current 49 SMRU172-sc-2011-01-27-1060361 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHOJ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU172 species_match 98.86 SAMEA1029074 8 Streptococcus pneumoniae 91.36 Streptococcus pneumoniae 1313 PRJEB2479 9 current na 85531 type Streptococcus pneumoniae 2015-07-13 17F 17F species Homo sapiens 2019 Streptococcus pneumoniae Streptococcus pneumoniae ERS022186 SC 2010-05-05 v1.2.4 2012-01-20T20:12:31.123 99.1 2062855 91.36 1313 2056 2024-02-05T16:33:57.000 2062865 79469 2062843 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001133825.1 type nasopharynx 98.86 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CLLN00000000.1 2012-01-05T09:56:36Z GCA_001133825.1 haploid public SMRU2676-sc-2011-01-27-1062889 85.88 1.77 40 2015-07-28T08:12:37 GCA_053203845.1 818919 37 6938_6#12 SMRU2676-sc-2011-01-27-1062889 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029074 1313 GCF_001133825.1 Generic.1.0 85.88 SRA GCF_001133825.1 category_na live 2018-03-09T09:53:07Z SMRU2676 PRJEB2479 GCF_001133825.1-RS_2026_01_15 SC SC 39 2018-03-09T09:53:07Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLLN01 2010-05-05 SMRU2676 2012-01-05T09:56:36Z Prokka current 39 SMRU2676-sc-2011-01-27-1062889 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLLN01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2676 species_match 98.86 SAMEA1029074 8 Streptococcus pneumoniae 91.36 Streptococcus pneumoniae 1313 PRJEB2479 9 current na Best-placed reference protein set; GeneMarkS-2+ 85531 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-15 17F 17F species Homo sapiens 1941 Streptococcus pneumoniae Streptococcus pneumoniae ERS022186 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-05-05 v1.2.4 2012-01-20T20:12:31.123 99.1 2062855 91.36 1313 2146 2024-02-05T16:33:57.000 2062865 79469 2062843 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 164 EBI 100 GCA_053203845.1 GCF_001133825.1-RS_2026_01_15 SLX Streptococcus pneumoniae GCF_001133825.1 type nasopharynx 98.86 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CLLN00000000.1 2012-01-05T09:56:36Z GCF_001133825.1 haploid public SMRU2676-sc-2011-01-27-1062889 85.88 1.77 40 2015-07-28T08:12:37 GCA_053203845.1 818919 41 6938_6#12 SMRU2676-sc-2011-01-27-1062889 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029074 1313 GCA_001133825.1 Generic.1.0 85.88 SRA GCA_001133825.1 category_na live 2018-03-09T09:53:07Z SMRU2676 PRJEB2479 Annotation submitted by SC SC SC 39 2018-03-09T09:53:07Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLLN01 2010-05-05 SMRU2676 6.10 2012-01-05T09:56:36Z Prokka current 39 SMRU2676-sc-2011-01-27-1062889 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLLN01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2676 species_match 98.86 SAMEA1025532 8 Streptococcus pneumoniae 92.79 Streptococcus pneumoniae 1313 PRJEB2395 9 current na 101482 type Streptococcus pneumoniae 2015-07-24 17F 17F species Homo sapiens 2012 Streptococcus pneumoniae Streptococcus pneumoniae ERS020871 SC 2009-03-20 v1.2.4 2012-01-20T19:57:27.750 99.1 2039696 92.79 1313 2052 2024-02-06T09:04:01.000 2039744 77743 2039679 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001342295.1 type nasopharynx 98.78 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CHPK00000000.1 2011-11-15T09:28:18Z GCA_001342295.1 haploid public SMRU1361-sc-2011-01-27-1061574 86.25 0.52 42 2015-07-28T08:11:38 GCA_053203845.1 809105 40 6710_6#17 SMRU1361-sc-2011-01-27-1061574 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025532 1313 GCF_001342295.1 Generic.1.0 86.25 SRA GCF_001342295.1 category_na live 2018-03-09T12:06:21Z SMRU1361 PRJEB2395 GCF_001342295.1-RS_2026_01_07 SC SC 40 2018-03-09T12:06:21Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHPK01 2009-03-20 SMRU1361 2011-11-15T09:28:18Z Prokka current 40 SMRU1361-sc-2011-01-27-1061574 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHPK01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU1361 species_match 98.78 SAMEA1025532 8 Streptococcus pneumoniae 92.79 Streptococcus pneumoniae 1313 PRJEB2395 9 current na Best-placed reference protein set; GeneMarkS-2+ 101482 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-07 17F 17F species Homo sapiens 1945 Streptococcus pneumoniae Streptococcus pneumoniae ERS020871 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-20 v1.2.4 2012-01-20T19:57:27.750 99.1 2039696 92.79 1313 2139 2024-02-06T09:04:01.000 2039744 77743 2039679 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 151 EBI 100 GCA_053203845.1 GCF_001342295.1-RS_2026_01_07 SLX Streptococcus pneumoniae GCF_001342295.1 type nasopharynx 98.78 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CHPK00000000.1 2011-11-15T09:28:18Z GCF_001342295.1 haploid public SMRU1361-sc-2011-01-27-1061574 86.25 0.52 42 2015-07-28T08:11:38 GCA_053203845.1 809105 43 6710_6#17 SMRU1361-sc-2011-01-27-1061574 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025532 1313 GCA_001342295.1 Generic.1.0 86.25 SRA GCA_001342295.1 category_na live 2018-03-09T12:06:21Z SMRU1361 PRJEB2395 Annotation submitted by SC SC SC 40 2018-03-09T12:06:21Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHPK01 2009-03-20 SMRU1361 6.10 2011-11-15T09:28:18Z Prokka current 40 SMRU1361-sc-2011-01-27-1061574 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHPK01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU1361 species_match 98.78 SAMEA1026340 10 Streptococcus pneumoniae 94.02 Streptococcus pneumoniae 1313 PRJEB2417 10 current na 73294 type Streptococcus pneumoniae 2017-06-27 17F 17F species Homo sapiens 1976 Streptococcus pneumoniae ERS023424 SC 2010-02-17 v1.2.4 2012-01-20T20:19:33.916 99.25 2050778 94.02 1313 2021 2017-06-24T15:55:30.000 2050778 73294 2050777 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900192755.1 type Nasophaynx 98.85 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/FYVG00000000.1 2011-09-14 GCA_900192755.1 haploid ERS023424 87.87 0.52 59 2017-06-28T08:06:11 GCA_053203845.1 811088 45 6486_6#18 United Kingdom UoS4385-sc-2011-02-14-1078478; 6486_618 1313 GCF_900192755.1 Generic.1.0 87.87 SRA Sample Description GCF_900192755.1 category_na live 2017-06-22 UoS4385 PRJEB2417 GCF_900192755.1-RS_2025_08_31 SC 59 1078478 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYVG01 2010-02-17 UoS4385 Prokka current 59 ERS023424 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYVG01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS4385 species_match 98.85 SAMEA1026340 10 Streptococcus pneumoniae 94.02 Streptococcus pneumoniae 1313 PRJEB2417 10 current na Best-placed reference protein set; GeneMarkS-2+ 73294 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-31 17F 17F species Homo sapiens 1914 Streptococcus pneumoniae ERS023424 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-02-17 v1.2.4 2012-01-20T20:19:33.916 99.25 2050778 94.02 1313 2116 2017-06-24T15:55:30.000 2050778 73294 2050777 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 154 EBI 100 GCA_053203845.1 GCF_900192755.1-RS_2025_08_31 SLX Streptococcus pneumoniae GCF_900192755.1 type Nasophaynx 98.85 OK 39.5 Streptococcus pneumoniae 72.9019 https://www.ncbi.nlm.nih.gov/nuccore/FYVG00000000.1 2011-09-14 GCF_900192755.1 haploid ERS023424 87.87 0.52 59 2017-06-28T08:06:11 GCA_053203845.1 811088 48 6486_6#18 United Kingdom UoS4385-sc-2011-02-14-1078478; 6486_618 1313 GCA_900192755.1 Generic.1.0 87.87 SRA Sample Description GCA_900192755.1 category_na live 2017-06-22 UoS4385 PRJEB2417 Annotation submitted by SC SC 59 1078478 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYVG01 2010-02-17 UoS4385 6.10 Prokka current 59 ERS023424 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYVG01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS4385 species_match 98.85 SAMEA1026787 10 Streptococcus pneumoniae 94.07 Streptococcus pneumoniae 1313 PRJEB2417 10 current na 72779 type Streptococcus pneumoniae 2017-06-27 17F 17F species Homo sapiens 1985 Streptococcus pneumoniae ERS023145 SC 2008-01-11 v1.2.4 2011-09-13T21:54:34.333 98.74 2050824 94.07 1313 2031 2017-06-24T15:32:37.000 2050824 72779 2050821 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900189975.1 type Nasophaynx 98.85 OK 39.5 Streptococcus pneumoniae 28.801 https://www.ncbi.nlm.nih.gov/nuccore/FYKE00000000.1 2011-09-06 GCA_900189975.1 haploid ERS023145 87.92 0.52 53 2017-06-28T08:06:05 GCA_053203845.1 811059 46 6472_6#19 United Kingdom UoS2122-sc-2011-02-14-1078199; 6472_619 1313 GCF_900189975.1 Generic.1.0 87.92 SRA Sample Description GCF_900189975.1 category_na live 2017-06-22 UoS2122 PRJEB2417 GCF_900189975.1-RS_2025_08_31 SC 53 1078199 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYKE01 2008-01-11 UoS2122 Prokka current 53 ERS023145 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYKE01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS2122 species_match 98.85 SAMEA1026787 10 Streptococcus pneumoniae 94.07 Streptococcus pneumoniae 1313 PRJEB2417 10 current na Best-placed reference protein set; GeneMarkS-2+ 72779 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-31 17F 17F species Homo sapiens 1916 Streptococcus pneumoniae ERS023145 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-01-11 v1.2.4 2011-09-13T21:54:34.333 98.74 2050824 94.07 1313 2122 2017-06-24T15:32:37.000 2050824 72779 2050821 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 158 EBI 100 GCA_053203845.1 GCF_900189975.1-RS_2025_08_31 SLX Streptococcus pneumoniae GCF_900189975.1 type Nasophaynx 98.85 OK 39.5 Streptococcus pneumoniae 28.801 https://www.ncbi.nlm.nih.gov/nuccore/FYKE00000000.1 2011-09-06 GCF_900189975.1 haploid ERS023145 87.92 0.52 53 2017-06-28T08:06:05 GCA_053203845.1 811059 48 6472_6#19 United Kingdom UoS2122-sc-2011-02-14-1078199; 6472_619 1313 GCA_900189975.1 Generic.1.0 87.92 SRA Sample Description GCA_900189975.1 category_na live 2017-06-22 UoS2122 PRJEB2417 Annotation submitted by SC SC 53 1078199 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYKE01 2008-01-11 UoS2122 6.10 Prokka current 53 ERS023145 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYKE01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS2122 species_match 98.85 SAMEA1023958 13 Streptococcus pneumoniae 93.97 Streptococcus pneumoniae 1313 PRJEB2357 13 current na 71993 type Streptococcus pneumoniae 2015-07-23 17F 17F species Homo sapiens 1964 Streptococcus pneumoniae Streptococcus pneumoniae ERS019590 SC 2008-06-04 v1.2.4 2012-01-20T19:45:53.106 98.32 2023787 93.97 1313 2005 2024-02-05T21:32:00.000 2023787 71993 2023772 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001335455.1 type nasopharynx 98.86 OK 40.0 Streptococcus pneumoniae 14.0452 https://www.ncbi.nlm.nih.gov/nuccore/CFEV00000000.1 2011-10-11T09:20:04Z GCA_001335455.1 haploid public SMRU432-sc-2011-01-27-1060621 86.67 0.52 55 2016-01-29T08:05:23 GCA_053203845.1 804797 41 6631_3#24 SMRU432-sc-2011-01-27-1060621 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023958 1313 GCF_001335455.1 Generic.1.0 86.67 SRA GCF_001335455.1 category_na live 2018-03-09T09:59:28Z SMRU432 PRJEB2357 GCF_001335455.1-RS_2026_01_16 SC SC 55 2018-03-09T09:59:28Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFEV01 2008-06-04 17F 2011-10-11T09:20:04Z Prokka current 55 SMRU432-sc-2011-01-27-1060621 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFEV01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-01 SMRU432 species_match 98.86 SAMEA1023958 13 Streptococcus pneumoniae 93.97 Streptococcus pneumoniae 1313 PRJEB2357 13 current na Best-placed reference protein set; GeneMarkS-2+ 71993 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-16 17F 17F species Homo sapiens 1912 Streptococcus pneumoniae Streptococcus pneumoniae ERS019590 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-06-04 v1.2.4 2012-01-20T19:45:53.106 98.32 2023787 93.97 1313 2118 2024-02-05T21:32:00.000 2023787 71993 2023772 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 162 EBI 100 GCA_053203845.1 GCF_001335455.1-RS_2026_01_16 SLX Streptococcus pneumoniae GCF_001335455.1 type nasopharynx 98.86 OK 40.0 Streptococcus pneumoniae 14.0452 https://www.ncbi.nlm.nih.gov/nuccore/CFEV00000000.1 2011-10-11T09:20:04Z GCF_001335455.1 haploid public SMRU432-sc-2011-01-27-1060621 86.67 0.52 55 2016-01-29T08:05:23 GCA_053203845.1 804797 44 6631_3#24 SMRU432-sc-2011-01-27-1060621 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023958 1313 GCA_001335455.1 Generic.1.0 86.67 SRA GCA_001335455.1 category_na live 2018-03-09T09:59:28Z SMRU432 PRJEB2357 Annotation submitted by SC SC SC 55 2018-03-09T09:59:28Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFEV01 2008-06-04 SMRU432 6.10 2011-10-11T09:20:04Z Prokka current 55 SMRU432-sc-2011-01-27-1060621 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFEV01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-01 SMRU432 species_match 98.86 SAMEA3354297 1 Streptococcus pneumoniae 92.91 Streptococcus pneumoniae PRJEB3084 1 na 1291014 type Streptococcus pneumoniae 2019-05-10 17F 17F Homo sapiens 2008 Streptococcus pneumoniae Streptococcus pneumoniae ERS708652 SC 2010 2015-10-14T08:11:15.886 2008520 92.91 1313 2065 Streptococcus pneumoniae 2024-02-06T15:53:16.000 2008558 1291014 2008511 NP Homo sapiens Carriage from large multi-isolate project ST8835 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901330435.1 type NP 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABBXW000000000.1 2015-10-13T13:59:03Z GCA_901330435.1 haploid public GPS_ZA_carriage_SP1990-sc-2278906 85.04 10 2018-03-10T20:10:33 GCA_053203845.1 797605 57 17138_4#15 GPS_ZA_carriage_SP1990-sc-2278906 South Africa 17138_4#15 SAMEA3354297 1313 Generic.1.0 85.04 SRA category_na live 2019-04-18T15:38:58Z GPSC61 PRJEB3084 SC SC 8 2278906 2019-04-18T15:38:58Z 2015-10-13T00:00:00.000 12036 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABBXW01 2010 GPSC61 substr. ST8835 2015-10-13T13:59:03Z Prokka current 8 GPS_ZA_carriage_SP1990-sc-2278906 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABBXW01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC61 species_match 98.79 SAMEA3353518 2 Streptococcus pneumoniae 92.72 Streptococcus pneumoniae PRJEB3084 2 na 309864 type Streptococcus pneumoniae 2019-05-10 17F 17F Homo sapiens 1982 Streptococcus pneumoniae Streptococcus pneumoniae ERS707873 SC 2013 2015-10-14T08:10:52.390 1995641 92.72 1313 2033 Streptococcus pneumoniae 2024-02-06T15:57:16.000 1995653 309864 1995638 NP Homo sapiens Carriage from large multi-isolate project ST8835 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901273435.1 type NP 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAATOH000000000.1 2015-10-13T13:59:45Z GCA_901273435.1 haploid public GPS_ZA_carriage_SP1512-sc-2278118 87.65 21 2018-03-10T20:09:59 GCA_001457635.1 793061 51 17175_4#87 GPS_ZA_carriage_SP1512-sc-2278118 South Africa 17175_4#87 SAMEA3353518 1313 Generic.1.0 87.65 SRA category_na live 2019-04-18T15:56:56Z GPSC61 PRJEB3084 SC SC 20 2278118 2019-04-18T15:56:56Z 2015-10-13T00:00:00.000 32682 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAATOH01 2013 GPSC61 substr. ST8835 2015-10-13T13:59:45Z Prokka current 20 GPS_ZA_carriage_SP1512-sc-2278118 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAATOH01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC61 species_match 98.72 SAMEA3354013 3 Streptococcus pneumoniae 93.12 Streptococcus pneumoniae PRJEB3084 3 na 312407 type Streptococcus pneumoniae 2019-05-10 17F 17F Homo sapiens 1998 Streptococcus pneumoniae Streptococcus pneumoniae ERS708368 SC 2014 2015-10-14T08:11:08.280 2004206 93.12 1313 2049 Streptococcus pneumoniae 2024-02-06T15:57:33.000 2004316 308597 2004205 blood Homo sapiens IPD from large multi-isolate project ST11744 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901241255.1 type blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAOUK000000000.1 2015-10-13T13:59:42Z GCA_901241255.1 haploid public GPS_ZA_2940-sc-2278619 85.05 14 2018-03-10T20:10:21 GCA_053203845.1 795798 51 17175_8#59 GPS_ZA_2940-sc-2278619 South Africa 17175_8#59 SAMEA3354013 1313 Generic.1.0 85.05 SRA category_na live 2019-04-18T15:56:59Z GPSC61 PRJEB3084 SC SC 13 2278619 2019-04-18T15:56:59Z 2015-10-13T00:00:00.000 43106 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAOUK01 2014 GPSC61 substr. ST11744 2015-10-13T13:59:42Z Prokka current 13 GPS_ZA_2940-sc-2278619 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAOUK01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC61 species_match 98.79 SAMEA3354341 3 Streptococcus pneumoniae 92.86 Streptococcus pneumoniae PRJEB3084 3 na 264074 type Streptococcus pneumoniae 2019-05-10 17F 17F Homo sapiens 2003 Streptococcus pneumoniae Streptococcus pneumoniae ERS708696 SC 2012 2015-10-14T08:11:17.663 2010204 92.86 1313 2054 Streptococcus pneumoniae 2024-02-06T15:53:18.000 2010204 264074 2010197 NP Homo sapiens Carriage from large multi-isolate project ST8835 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901333115.1 type NP 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABCIC000000000.1 2015-10-13T13:58:32Z GCA_901333115.1 haploid public GPS_ZA_carriage_SP2027-sc-2278994 85.06 19 2018-03-10T20:10:35 GCA_053203845.1 798078 51 17138_4#59 GPS_ZA_carriage_SP2027-sc-2278994 South Africa 17138_4#59 SAMEA3354341 1313 Generic.1.0 85.06 SRA category_na live 2019-04-18T15:38:58Z GPSC61 PRJEB3084 SC SC 19 2278994 2019-04-18T15:38:58Z 2015-10-13T00:00:00.000 31505 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABCIC01 2012 GPSC61 substr. ST8835 2015-10-13T13:58:32Z Prokka current 19 GPS_ZA_carriage_SP2027-sc-2278994 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABCIC01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC61 species_match 98.79 SAMEA3354373 2 Streptococcus pneumoniae 92.96 Streptococcus pneumoniae PRJEB3084 2 na 245735 type Streptococcus pneumoniae 2019-05-10 17F 17F Homo sapiens 2000 Streptococcus pneumoniae Streptococcus pneumoniae ERS708728 SC 2013 2015-10-14T08:11:19.543 2007879 92.96 1313 2050 Streptococcus pneumoniae 2024-02-06T15:53:22.000 2007890 245735 2007877 NP Homo sapiens Carriage from large multi-isolate project ST8835 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901303355.1 type NP 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAXYL000000000.1 2015-10-13T13:58:56Z GCA_901303355.1 haploid public GPS_ZA_carriage_SP2054-sc-2279075 85.06 21 2018-03-10T20:10:37 GCA_053203845.1 797168 50 17138_4#91 GPS_ZA_carriage_SP2054-sc-2279075 South Africa 17138_4#91 SAMEA3354373 1313 Generic.1.0 85.06 SRA category_na live 2019-04-18T15:38:59Z GPSC61 PRJEB3084 SC SC 20 2279075 2019-04-18T15:38:59Z 2015-10-13T00:00:00.000 40650 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAXYL01 2013 GPSC61 substr. ST8835 2015-10-13T13:58:56Z Prokka current 20 GPS_ZA_carriage_SP2054-sc-2279075 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAXYL01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC61 species_match 98.78 SAMEA3353822 3 Streptococcus pneumoniae 92.95 Streptococcus pneumoniae PRJEB3084 3 na 230362 type Streptococcus pneumoniae 2019-05-11 17F 17F Homo sapiens 1997 Streptococcus pneumoniae Streptococcus pneumoniae ERS708177 SC 2010 2015-10-14T08:11:02.960 2007859 92.95 1313 2049 Streptococcus pneumoniae 2024-02-06T15:57:26.000 2007870 230362 2007859 NP Homo sapiens Carriage from large multi-isolate project ST8835 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901312455.1 type NP 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAZHI000000000.1 2015-10-13T13:58:59Z GCA_901312455.1 haploid public GPS_ZA_carriage_SP1757-sc-2278426 85.05 26 2018-03-10T20:10:13 GCA_053203845.1 797215 52 17175_6#54 GPS_ZA_carriage_SP1757-sc-2278426 South Africa 17175_6#54 SAMEA3353822 1313 Generic.1.0 85.05 SRA category_na live 2019-04-18T15:56:58Z GPSC61 PRJEB3084 SC SC 25 2278426 2019-04-18T15:56:58Z 2015-10-13T00:00:00.000 11620 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAZHI01 2010 GPSC61 substr. ST8835 2015-10-13T13:58:59Z Prokka current 25 GPS_ZA_carriage_SP1757-sc-2278426 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAZHI01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-11 GPSC61 species_match 98.79 SAMEA3353412 2 Streptococcus pneumoniae 92.77 Streptococcus pneumoniae PRJEB3084 3 na 313103 type Streptococcus pneumoniae 2019-05-10 17F 17F Homo sapiens 1979 Streptococcus pneumoniae Streptococcus pneumoniae ERS707767 SC 2013 2015-10-14T08:10:48.566 1996997 92.77 1313 2030 Streptococcus pneumoniae 2024-02-06T15:57:13.000 1997066 228244 1996996 NP Homo sapiens Carriage from large multi-isolate project ST8835 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901265185.1 type NP 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAASII000000000.1 2015-10-13T13:59:40Z GCA_901265185.1 haploid public GPS_ZA_carriage_SP1457-sc-2278012 87.76 21 2018-03-10T20:09:54 GCA_001457635.1 793353 51 17175_4#32 GPS_ZA_carriage_SP1457-sc-2278012 South Africa 17175_4#32 SAMEA3353412 1313 Generic.1.0 87.76 SRA category_na live 2019-04-18T15:56:55Z GPSC61 PRJEB3084 SC SC 19 2278012 2019-04-18T15:56:55Z 2015-10-13T00:00:00.000 32707 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAASII01 2013 GPSC61 substr. ST8835 2015-10-13T13:59:40Z Prokka current 19 GPS_ZA_carriage_SP1457-sc-2278012 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAASII01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC61 species_match 98.72 SAMEA3353329 3 Streptococcus pneumoniae 93.12 Streptococcus pneumoniae PRJEB3084 3 na 216485 type Streptococcus pneumoniae 2019-05-10 17F 17F Homo sapiens 1997 Streptococcus pneumoniae Streptococcus pneumoniae ERS707684 SC 2012 2015-10-14T08:10:45.940 2004232 93.12 1313 2049 Streptococcus pneumoniae 2024-02-06T15:57:10.000 2004256 216485 2004230 NP Homo sapiens Carriage from large multi-isolate project ST11744 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901256315.1 type NP 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAARAR000000000.1 2015-10-13T13:59:35Z GCA_901256315.1 haploid public GPS_ZA_carriage_SP1317-sc-2277927 85.05 20 2018-03-10T20:09:51 GCA_053203845.1 795799 52 17059_7#83 GPS_ZA_carriage_SP1317-sc-2277927 South Africa 17059_7#83 SAMEA3353329 1313 Generic.1.0 85.05 SRA category_na live 2019-04-18T15:56:54Z GPSC61 PRJEB3084 SC SC 19 2277927 2019-04-18T15:56:54Z 2015-10-13T00:00:00.000 31124 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAARAR01 2012 GPSC61 substr. ST11744 2015-10-13T13:59:35Z Prokka current 19 GPS_ZA_carriage_SP1317-sc-2277927 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAARAR01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC61 species_match 98.8 SAMEA3354072 3 Streptococcus pneumoniae 92.79 Streptococcus pneumoniae PRJEB3084 3 suppressed na 237332 type Streptococcus pneumoniae 2019-05-11 17F 17F Homo sapiens 2018 Streptococcus pneumoniae Streptococcus pneumoniae ERS708427 SC 2014 2015-10-14T08:11:10.063 2022930 92.79 1313 2070 Streptococcus pneumoniae 2024-02-06T15:57:35.000 2022972 214477 2022928 blood Homo sapiens IPD from large multi-isolate project ST11737 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901231975.1 type blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANKX000000000.1 2015-10-13T13:58:30Z GCA_901231975.1 haploid public GPS_ZA_2877-sc-2278678 85.54 16 2018-03-10T20:10:23 GCA_053203845.1 802094 52 17175_7#85 GPS_ZA_2877-sc-2278678 South Africa 17175_7#85 SAMEA3354072 1313 GCF_901231975.1 Generic.1.0 85.54 SRA GCF_901231975.1 category_na live 2019-04-18T15:57:00Z GPSC61 PRJEB3084 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SC SC 14 2278678 2019-04-18T15:57:00Z 2015-10-13T00:00:00.000 42108 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANKX01 2014 GPSC61 substr. ST11737 2015-10-13T13:58:30Z Prokka current 14 GPS_ZA_2877-sc-2278678 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANKX01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-11 GPSC61 species_match 98.8 SAMEA3354072 3 Streptococcus pneumoniae 92.79 Streptococcus pneumoniae PRJEB3084 3 current na Best-placed reference protein set; GeneMarkS-2+ 237332 type Streptococcus pneumoniae This record was removed by RefSeq staff. Please contact info@ncbi.nlm.nih.gov for further details. Reason: surveillance assembly 2019-05-23 17F 17F Homo sapiens 1955 Streptococcus pneumoniae Streptococcus pneumoniae ERS708427 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2014 2015-10-14T08:11:10.063 2022930 92.79 1313 2183 Streptococcus pneumoniae 2024-02-06T15:57:35.000 2022972 214477 blood Homo sapiens IPD from large multi-isolate project 174 ST11737 EBI 100 GCA_053203845.1 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SLX Streptococcus pneumoniae GCF_901231975.1 type blood 98.8 ERC000011 OK Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANKX000000000.1 2015-10-13T13:58:30Z GCF_901231975.1 haploid public GPS_ZA_2877-sc-2278678 85.54 16 2018-03-10T20:10:23 GCA_053203845.1 54 17175_7#85 GPS_ZA_2877-sc-2278678 South Africa 17175_7#85 SAMEA3354072 1313 GCA_901231975.1 Generic.1.0 85.54 SRA GCA_901231975.1 category_na live 2019-04-18T15:57:00Z GPSC61 PRJEB3084 Annotation submitted by SC SC SC 14 2278678 2019-04-18T15:57:00Z 2015-10-13T00:00:00.000 42108 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANKX01 2014 GPSC61 substr. ST11737 4.8 2015-10-13T13:58:30Z Prokka suppressed 14 GPS_ZA_2877-sc-2278678 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANKX01 Scaffold SOURCE_DATABASE_REFSEQ South Africa 2019-05-11 GPSC61 species_match 98.8 SAMEA3353402 4 Streptococcus pneumoniae 92.31 Streptococcus pneumoniae PRJEB3084 4 na 213237 type Streptococcus pneumoniae 2019-05-11 17F 17F Homo sapiens 2007 Streptococcus pneumoniae Streptococcus pneumoniae ERS707757 SC 2012 2015-10-14T08:10:48.223 2045613 92.31 1313 2061 Streptococcus pneumoniae 2024-02-06T15:57:12.000 2045613 213237 2045610 NP Homo sapiens Carriage from large multi-isolate project ST8829 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901262035.1 type NP 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAARWO000000000.1 2015-10-13T13:58:51Z GCA_901262035.1 haploid public GPS_ZA_carriage_SP1355-sc-2278002 86.05 27 2018-03-10T20:09:54 GCA_053203845.1 812987 54 17059_8#27 GPS_ZA_carriage_SP1355-sc-2278002 South Africa 17059_8#27 SAMEA3353402 1313 Generic.1.0 86.05 SRA category_na live 2019-04-18T15:56:55Z GPSC61 PRJEB3084 SC SC 27 2278002 2019-04-18T15:56:55Z 2015-10-13T00:00:00.000 31181 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAARWO01 2012 GPSC61 substr. ST8829 2015-10-13T13:58:51Z Prokka current 27 GPS_ZA_carriage_SP1355-sc-2278002 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAARWO01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-11 GPSC61 species_match 98.76 SAMEA3353897 4 Streptococcus pneumoniae 91.4 Streptococcus pneumoniae PRJEB3084 4 na 209951 type Streptococcus pneumoniae 2019-05-14 17F 17F Homo sapiens 2104 Streptococcus pneumoniae Streptococcus pneumoniae ERS708252 SC 2010 2015-10-14T08:11:05.150 2104278 91.4 1313 2157 Streptococcus pneumoniae 2024-02-06T15:57:28.000 2104574 209951 2104276 NP Homo sapiens Carriage from large multi-isolate project ST11097 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901246775.1 type NP 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAPPW000000000.1 2015-10-13T13:58:34Z GCA_901246775.1 haploid public GPS_ZA_carriage_SP1866-sc-2278501 87.65 27 2018-03-10T20:10:16 GCA_053203845.1 835946 53 17150_5#92 GPS_ZA_carriage_SP1866-sc-2278501 South Africa 17150_5#92 SAMEA3353897 1313 Generic.1.0 87.65 SRA category_na live 2019-04-18T15:56:58Z GPSC61 PRJEB3084 SC SC 25 2278501 2019-04-18T15:56:58Z 2015-10-13T00:00:00.000 11172_17F https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAPPW01 2010 GPSC61 substr. ST11097 2015-10-13T13:58:34Z Prokka current 25 GPS_ZA_carriage_SP1866-sc-2278501 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAPPW01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-14 GPSC61 species_match 98.75 SAMEA3354070 3 Streptococcus pneumoniae 92.65 Streptococcus pneumoniae PRJEB3084 3 suppressed na 209897 type Streptococcus pneumoniae 2019-05-11 17F 17F Homo sapiens 2013 Streptococcus pneumoniae Streptococcus pneumoniae ERS708425 SC 2014 2015-10-14T08:11:09.990 2020354 92.65 1313 2066 Streptococcus pneumoniae 2024-02-06T15:57:35.000 2020386 209897 2020350 blood Homo sapiens IPD from large multi-isolate project ST11737 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901231825.1 type blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANKI000000000.1 2015-10-13T13:59:24Z GCA_901231825.1 haploid public GPS_ZA_2876-sc-2278676 85.3 21 2018-03-10T20:10:23 GCA_053203845.1 801163 53 17175_7#84 GPS_ZA_2876-sc-2278676 South Africa 17175_7#84 SAMEA3354070 1313 GCF_901231825.1 Generic.1.0 85.3 SRA GCF_901231825.1 category_na live 2019-04-18T15:57:00Z GPSC61 PRJEB3084 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SC SC 18 2278676 2019-04-18T15:57:00Z 2015-10-13T00:00:00.000 41729 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANKI01 2014 GPSC61 substr. ST11737 2015-10-13T13:59:24Z Prokka current 18 GPS_ZA_2876-sc-2278676 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANKI01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-11 GPSC61 species_match 98.79 SAMEA3354070 3 Streptococcus pneumoniae 92.65 Streptococcus pneumoniae PRJEB3084 3 current na Best-placed reference protein set; GeneMarkS-2+ 209897 type Streptococcus pneumoniae This record was removed by RefSeq staff. Please contact info@ncbi.nlm.nih.gov for further details. Reason: surveillance assembly 2019-05-23 17F 17F Homo sapiens 1961 Streptococcus pneumoniae Streptococcus pneumoniae ERS708425 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2014 2015-10-14T08:11:09.990 2020354 92.65 1313 2191 Streptococcus pneumoniae 2024-02-06T15:57:35.000 2020386 209897 blood Homo sapiens IPD from large multi-isolate project 175 ST11737 EBI 100 GCA_053203845.1 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SLX Streptococcus pneumoniae GCF_901231825.1 type blood 98.79 ERC000011 OK Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANKI000000000.1 2015-10-13T13:59:24Z GCF_901231825.1 haploid public GPS_ZA_2876-sc-2278676 85.3 21 2018-03-10T20:10:23 GCA_053203845.1 55 17175_7#84 GPS_ZA_2876-sc-2278676 South Africa 17175_7#84 SAMEA3354070 1313 GCA_901231825.1 Generic.1.0 85.3 SRA GCA_901231825.1 category_na live 2019-04-18T15:57:00Z GPSC61 PRJEB3084 Annotation submitted by SC SC SC 18 2278676 2019-04-18T15:57:00Z 2015-10-13T00:00:00.000 41729 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANKI01 2014 GPSC61 substr. ST11737 4.8 2015-10-13T13:59:24Z Prokka suppressed 18 GPS_ZA_2876-sc-2278676 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANKI01 Scaffold SOURCE_DATABASE_REFSEQ South Africa 2019-05-11 GPSC61 species_match 98.79 SAMEA3354041 3 Streptococcus pneumoniae 92.98 Streptococcus pneumoniae PRJEB3084 3 na 209767 type Streptococcus pneumoniae 2019-05-10 17F 17F Homo sapiens 1999 Streptococcus pneumoniae Streptococcus pneumoniae ERS708396 SC 2014 2015-10-14T08:11:09.343 2006880 92.98 1313 2049 Streptococcus pneumoniae 2024-02-06T15:57:34.000 2006880 209767 2006874 CSF Homo sapiens Meningitis from large multi-isolate project ST8835 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901243185.1 type CSF 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAPBY000000000.1 2015-10-13T13:59:22Z GCA_901243185.1 haploid public GPS_ZA_2954-sc-2278647 85.03 17 2018-03-10T20:10:22 GCA_053203845.1 796818 50 17175_8#73 GPS_ZA_2954-sc-2278647 South Africa 17175_8#73 SAMEA3354041 1313 Generic.1.0 85.03 SRA category_na live 2019-04-18T15:57:00Z GPSC61 PRJEB3084 SC SC 17 2278647 2019-04-18T15:57:00Z 2015-10-13T00:00:00.000 42762 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAPBY01 2014 GPSC61 substr. ST8835 2015-10-13T13:59:22Z Prokka current 17 GPS_ZA_2954-sc-2278647 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAPBY01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC61 species_match 98.8 SAMEA3353764 3 Streptococcus pneumoniae 92.84 Streptococcus pneumoniae PRJEB3084 3 na 209748 type Streptococcus pneumoniae 2019-05-10 17F 17F Homo sapiens 2006 Streptococcus pneumoniae Streptococcus pneumoniae ERS708119 SC 2010 2015-10-14T08:11:00.760 2010399 92.84 1313 2058 Streptococcus pneumoniae 2024-02-06T15:57:24.000 2010399 209748 2010389 NP Homo sapiens Carriage from large multi-isolate project ST11744 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901310385.1 type NP 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAZAA000000000.1 2015-10-13T13:58:59Z GCA_901310385.1 haploid public GPS_ZA_carriage_SP1728-sc-2278368 85.06 17 2018-03-10T20:10:10 GCA_053203845.1 798221 52 17175_6#25 GPS_ZA_carriage_SP1728-sc-2278368 South Africa 17175_6#25 SAMEA3353764 1313 Generic.1.0 85.06 SRA category_na live 2019-04-18T15:56:57Z GPSC61 PRJEB3084 SC SC 17 2278368 2019-04-18T15:56:57Z 2015-10-13T00:00:00.000 10486 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAZAA01 2010 GPSC61 substr. ST11744 2015-10-13T13:58:59Z Prokka current 17 GPS_ZA_carriage_SP1728-sc-2278368 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAZAA01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC61 species_match 98.79 SAMEA3354120 3 Streptococcus pneumoniae 89.78 Streptococcus pneumoniae PRJEB3084 3 na 204242 type Streptococcus pneumoniae 2019-05-24 17F 17F Homo sapiens 2183 Streptococcus pneumoniae Streptococcus pneumoniae ERS708475 SC 2010 2015-10-14T08:11:11.193 2188148 89.78 1313 2240 Streptococcus pneumoniae 2024-02-06T15:57:37.000 2188403 195305 2188148 NP Homo sapiens Carriage from large multi-isolate project ST11098 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901250395.1 type NP 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAQDS000000000.1 2015-10-13T13:59:10Z GCA_901250395.1 haploid public GPS_ZA_carriage_SP1885-sc-2278728 89.53 48 2018-03-10T20:10:25 GCA_053203845.1 864499 57 17150_6#23 GPS_ZA_carriage_SP1885-sc-2278728 South Africa 17150_6#23 SAMEA3354120 1313 Generic.1.0 89.53 SRA category_na live 2019-04-18T15:57:00Z GPSC515 PRJEB3084 SC SC 45 2278728 2019-04-18T15:57:00Z 2015-10-13T00:00:00.000 12022 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAQDS01 2010 GPSC515 substr. ST11098 2015-10-13T13:59:10Z Prokka current 45 GPS_ZA_carriage_SP1885-sc-2278728 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAQDS01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-24 GPSC515 species_match 98.72 SAMEA3353206 3 Streptococcus pneumoniae 92.02 Streptococcus pneumoniae PRJEB3084 3 na 181954 type Streptococcus pneumoniae 2019-05-14 17F 17F Homo sapiens 2067 Streptococcus pneumoniae Streptococcus pneumoniae ERS707561 SC 2012 2015-10-14T08:10:41.076 2096112 92.02 1313 2120 Streptococcus pneumoniae 2024-02-06T15:57:06.000 2096186 180863 2096111 NP Homo sapiens Carriage from large multi-isolate project ST12280 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901238445.1 type NP 98.63 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAOKC000000000.1 2015-10-13T13:59:31Z GCA_901238445.1 haploid public GPS_ZA_carriage_SP1163-sc-2277804 87.9 31 2018-03-10T20:09:46 GCA_053203845.1 831876 53 17059_6#23 GPS_ZA_carriage_SP1163-sc-2277804 South Africa 17059_6#23 SAMEA3353206 1313 Generic.1.0 87.9 SRA category_na live 2019-04-18T15:56:53Z GPSC243 PRJEB3084 SC SC 30 2277804 2019-04-18T15:56:53Z 2015-10-13T00:00:00.000 30073 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAOKC01 2012 GPSC243 substr. ST12280 2015-10-13T13:59:31Z Prokka current 30 GPS_ZA_carriage_SP1163-sc-2277804 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAOKC01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-14 GPSC243 species_match 98.63 SAMEA3354040 4 Streptococcus pneumoniae 93.48 Streptococcus pneumoniae PRJEB3084 4 suppressed na 176788 type Streptococcus pneumoniae 2019-05-13 17F 17F Homo sapiens 2048 Streptococcus pneumoniae Streptococcus pneumoniae ERS708395 SC 2014 2015-10-14T08:11:09.310 2079245 93.48 1313 2100 Streptococcus pneumoniae 2024-02-06T15:57:34.000 2079256 176788 2079234 blood Homo sapiens IPD from large multi-isolate project ST392 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901229875.1 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANDA000000000.1 2015-10-13T13:59:23Z GCA_901229875.1 haploid public GPS_ZA_2862-sc-2278646 88.58 27 2018-03-10T20:10:22 GCA_053203845.1 822558 52 17175_7#70 GPS_ZA_2862-sc-2278646 South Africa 17175_7#70 SAMEA3354040 1313 GCF_901229875.1 Generic.1.0 88.58 SRA GCF_901229875.1 category_na live 2019-04-18T15:57:00Z GPSC49 PRJEB3084 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SC SC 26 2278646 2019-04-18T15:57:00Z 2015-10-13T00:00:00.000 42016 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANDA01 2014 GPSC49 substr. ST392 2015-10-13T13:59:23Z Prokka current 26 GPS_ZA_2862-sc-2278646 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANDA01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-13 GPSC49 species_match 98.86 SAMEA3354040 4 Streptococcus pneumoniae 93.48 Streptococcus pneumoniae PRJEB3084 4 current na Best-placed reference protein set; GeneMarkS-2+ 176788 type Streptococcus pneumoniae This record was removed by RefSeq staff. Please contact info@ncbi.nlm.nih.gov for further details. Reason: surveillance assembly 2019-05-23 17F 17F Homo sapiens 2002 Streptococcus pneumoniae Streptococcus pneumoniae ERS708395 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2014 2015-10-14T08:11:09.310 2079245 93.48 1313 2256 Streptococcus pneumoniae 2024-02-06T15:57:34.000 2079256 176788 blood Homo sapiens IPD from large multi-isolate project 199 ST392 EBI 100 GCA_053203845.1 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SLX Streptococcus pneumoniae GCF_901229875.1 type blood 98.86 ERC000011 OK Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANDA000000000.1 2015-10-13T13:59:23Z GCF_901229875.1 haploid public GPS_ZA_2862-sc-2278646 88.58 27 2018-03-10T20:10:22 GCA_053203845.1 55 17175_7#70 GPS_ZA_2862-sc-2278646 South Africa 17175_7#70 SAMEA3354040 1313 GCA_901229875.1 Generic.1.0 88.58 SRA GCA_901229875.1 category_na live 2019-04-18T15:57:00Z GPSC49 PRJEB3084 Annotation submitted by SC SC SC 26 2278646 2019-04-18T15:57:00Z 2015-10-13T00:00:00.000 42016 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANDA01 2014 GPSC49 substr. ST392 4.8 2015-10-13T13:59:23Z Prokka suppressed 26 GPS_ZA_2862-sc-2278646 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANDA01 Scaffold SOURCE_DATABASE_REFSEQ South Africa 2019-05-13 GPSC49 species_match 98.86 SAMEA2382558 6 Streptococcus pneumoniae 94.34 Streptococcus pneumoniae 1313 PRJEB4909 9 current na 127352 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2006 Streptococcus pneumoniae Streptococcus pneumoniae ERS408883 SC 2006/2012 v1.2.4 2014-07-03T08:06:59.770 99.06 2049309 94.34 1313 2051 2024-02-06T06:55:14.000 2052115 77451 2049308 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900023785.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/FCVB00000000.1 2014-07-02T15:07:58Z GCA_900023785.1 haploid public 2110252-sc-1869803 88.1 0.52 40 2015-08-10T19:42:09 GCA_053203845.1 810535 45 12673_6#13 2110252-sc-1869803 Netherlands 12673_6#13 SAMEA2382558 1313 GCF_900023785.1 Generic.1.0 88.1 SRA GCF_900023785.1 category_na live 2018-03-09T10:42:58Z 2842STDY5753098 PRJEB4909 GCF_900023785.1-RS_2026_01_25 SC SC 30 1869803 2018-03-09T10:42:58Z 2014-07-02T00:00:00.000 2110252 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCVB01 2006/2012 2842STDY5753098 2014-07-02T15:07:58Z Prokka current 30 2110252-sc-1869803 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCVB01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753098 species_match 98.85 SAMEA2382558 6 Streptococcus pneumoniae 94.34 Streptococcus pneumoniae 1313 PRJEB4909 9 current na Best-placed reference protein set; GeneMarkS-2+ 127352 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1929 Streptococcus pneumoniae Streptococcus pneumoniae ERS408883 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-03T08:06:59.770 99.06 2049309 94.34 1313 2139 2024-02-06T06:55:14.000 2052115 77451 2049308 CSF Homo sapiens Streptococcus pneumoniae Disease 159 EBI 100 GCA_053203845.1 GCF_900023785.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900023785.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/FCVB00000000.1 2014-07-02T15:07:58Z GCF_900023785.1 haploid public 2110252-sc-1869803 88.1 0.52 40 2015-08-10T19:42:09 GCA_053203845.1 810535 51 12673_6#13 2110252-sc-1869803 Netherlands 12673_6#13 SAMEA2382558 1313 GCA_900023785.1 Generic.1.0 88.1 SRA GCA_900023785.1 category_na live 2018-03-09T10:42:58Z 2842STDY5753098 PRJEB4909 Annotation submitted by SC SC SC 30 1869803 2018-03-09T10:42:58Z 2014-07-02T00:00:00.000 2110252 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCVB01 2006/2012 2842STDY5753098 6.10 2014-07-02T15:07:58Z Prokka current 30 2110252-sc-1869803 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCVB01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753098 species_match 98.85 SAMEA104035373 3 Streptococcus pneumoniae 93.78 Streptococcus pneumoniae PRJEB3084 3 na 272339 type Streptococcus pneumoniae 2019-05-11 18A 18A Homo sapiens 2051 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699266 SC 2012 2017-08-10T16:09:54.510 2056853 93.78 1313 2101 Streptococcus pneumoniae 2024-02-06T15:52:05.000 2056853 2245STDY6835446 272339 2056853 blood Homo sapiens IPD from large multi-isolate project ST241 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901287655.1 type Streptococcus pneumoniae blood 98.8 ERC000011 OK 40 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAVQL000000000.1 2017-08-08T13:54:43Z GCA_901287655.1 haploid public 999b8180-1f66-11e7-b93e-3c4a9275d6c8 91.37 22 2017-08-10T17:09:51.260 GCA_001457635.1 817981 50 22841_4#67 999b8180-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_4#67 SAMEA104035373 1313 Generic.1.0 91.37 SRA category_na live 2019-04-18T15:32:27Z GPSC95 PRJEB3084 SC SC 22 3052121 2019-04-18T15:32:27Z 2017-08-08T00:00:00.000 26010 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAVQL01 2012 GPSC95 substr. ST241 2017-08-08T13:54:43Z Prokka current 22 999b8180-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAVQL01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-11 GPSC95 species_match 98.8 SAMEA3381548 2 Streptococcus pneumoniae 92.52 Streptococcus pneumoniae PRJEB3084 3 na 443863 type Streptococcus pneumoniae 2019-05-11 18A 18A Homo sapiens 2051 Streptococcus pneumoniae Streptococcus pneumoniae ERS719807 SC 2009 2015-12-16T09:08:10.213 2054423 92.52 1313 2103 Streptococcus pneumoniae 2024-02-06T15:54:14.000 2054438 270520 2054421 NP swab Homo sapiens Carriage from large multi-isolate project ST241 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901258925.1 type NP swab 98.75 ERC000011 OK 40 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAARKR000000000.1 2015-12-15T09:25:21Z GCA_901258925.1 haploid public GPS_GM_2010-sc-2279426 86.62 19 2018-03-10T20:14:02 GCA_053203845.1 817402 52 17794_7#3 GPS_GM_2010-sc-2279426 Gambia 17794_7#3 SAMEA3381548 1313 Generic.1.0 86.62 SRA category_na live 2019-04-18T15:39:12Z GPSC95 PRJEB3084 SC SC 18 2279426 2019-04-18T15:39:12Z 2015-12-15T00:00:00.000 3319 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAARKR01 2009 GPSC95 substr. ST241 2015-12-15T09:25:21Z Prokka current 18 GPS_GM_2010-sc-2279426 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAARKR01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-11 GPSC95 species_match 98.75 SAMEA104154972 3 Streptococcus pneumoniae 91.86 Streptococcus pneumoniae PRJEB3084 3 na 238428 type Streptococcus pneumoniae 2019-05-13 18A 18A Homo sapiens 2122 Streptococcus pneumoniae Streptococcus pneumoniae ERS1813990 SC 2007 2017-08-10T16:10:40.490 2096663 91.86 1313 2172 Streptococcus pneumoniae 2024-02-06T15:51:54.000 2096663 2245STDY6655312 238428 2096660 blood Homo sapiens IPD from large multi-isolate project ST241 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901303675.1 type Streptococcus pneumoniae blood 98.76 ERC000011 OK 40 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAXZQ000000000.1 2017-08-08T13:54:43Z GCA_901303675.1 haploid public 86d71d90-c37a-11e6-b158-3c4a9275d6c8 91.23 30 2017-08-10T17:10:53.147 GCA_001457635.1 834396 50 22027_1#85 86d71d90-c37a-11e6-b158-3c4a9275d6c8 Israel 22027_1#85 SAMEA104154972 1313 Generic.1.0 91.23 SRA category_na live 2019-04-18T15:32:23Z GPSC95 PRJEB3084 SC SC 30 2869215 2019-04-18T15:32:23Z 2017-08-08T00:00:00.000 133077 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAXZQ01 2007 GPSC95 substr. ST241 2017-08-08T13:54:43Z Prokka current 30 86d71d90-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAXZQ01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-13 GPSC95 species_match 98.76 SAMEA2658692 3 Streptococcus pneumoniae 91.75 Streptococcus pneumoniae PRJEB3084 4 na 209755 type Streptococcus pneumoniae 2019-05-11 17F 17F Homo sapiens 2020 Streptococcus pneumoniae Streptococcus pneumoniae ERS508720 SC 2009 2015-01-29T08:37:56.630 2032757 91.75 1313 2066 Streptococcus pneumoniae 2024-02-06T15:55:49.000 2033906 209755 2032757 blood Homo sapiens IPD from large multi-isolate project ST8835 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901267505.1 type blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAASRT000000000.1 2015-01-14T09:35:11Z GCA_901267505.1 haploid public GPS_ZA_1635-sc-2021300 84.99 27 2018-03-10T19:28:06 GCA_053203845.1 806842 46 14566_4#68 GPS_ZA_1635-sc-2021300 South Africa 14566_4#68 SAMEA2658692 1313 Generic.1.0 84.99 SRA category_na live 2019-04-18T15:56:35Z GPSC61 PRJEB3084 SC SC 23 2021300 2019-04-18T15:56:35Z 2015-01-14T00:00:00.000 21935 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAASRT01 2009 GPSC61 substr. ST8835 2015-01-14T09:35:11Z Prokka current 23 GPS_ZA_1635-sc-2021300 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAASRT01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-11 GPSC61 species_match 98.79 SAMEA2814298 3 Streptococcus pneumoniae 92.39 Streptococcus pneumoniae PRJEB3084 4 suppressed na 278821 type Streptococcus pneumoniae 2019-05-16 17F 17F Homo sapiens 2168 Streptococcus pneumoniae Streptococcus pneumoniae ERS566666 SC 2013 2015-03-04T08:09:48.280 2142781 92.39 1313 2213 Streptococcus pneumoniae 2024-02-06T15:56:19.000 2144621 202363 2142781 blood Homo sapiens IPD from large multi-isolate project ST10867 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901233515.1 type blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANQQ000000000.1 2015-03-03T09:52:26Z GCA_901233515.1 haploid public GPS_ZA_2510-sc-2022848 90.22 35 2018-03-10T19:37:53 GCA_053203845.1 848813 45 14913_7#88 GPS_ZA_2510-sc-2022848 South Africa 14913_7#88 SAMEA2814298 1313 GCF_901233515.1 Generic.1.0 90.22 SRA GCF_901233515.1 category_na live 2019-04-18T15:56:42Z GPSC458 PRJEB3084 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SC SC 27 2022848 2019-04-18T15:56:42Z 2015-03-03T00:00:00.000 38531 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANQQ01 2013 GPSC458 substr. ST10867 2015-03-03T09:52:26Z Prokka current 27 GPS_ZA_2510-sc-2022848 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANQQ01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-16 GPSC458 species_match 98.79 SAMEA2814298 3 Streptococcus pneumoniae 92.39 Streptococcus pneumoniae PRJEB3084 4 current na Best-placed reference protein set; GeneMarkS-2+ 278821 type Streptococcus pneumoniae This record was removed by RefSeq staff. Please contact info@ncbi.nlm.nih.gov for further details. Reason: surveillance assembly 2019-05-23 17F 17F Homo sapiens 2106 Streptococcus pneumoniae Streptococcus pneumoniae ERS566666 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2013 2015-03-04T08:09:48.280 2142781 92.39 1313 2352 Streptococcus pneumoniae 2024-02-06T15:56:19.000 2144621 202363 blood Homo sapiens IPD from large multi-isolate project 193 ST10867 EBI 100 GCA_053203845.1 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SLX Streptococcus pneumoniae GCF_901233515.1 type blood 98.79 ERC000011 OK Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANQQ000000000.1 2015-03-03T09:52:26Z GCF_901233515.1 haploid public GPS_ZA_2510-sc-2022848 90.22 35 2018-03-10T19:37:53 GCA_053203845.1 53 14913_7#88 GPS_ZA_2510-sc-2022848 South Africa 14913_7#88 SAMEA2814298 1313 GCA_901233515.1 Generic.1.0 90.22 SRA GCA_901233515.1 category_na live 2019-04-18T15:56:42Z GPSC458 PRJEB3084 Annotation submitted by SC SC SC 27 2022848 2019-04-18T15:56:42Z 2015-03-03T00:00:00.000 38531 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANQQ01 2013 GPSC458 substr. ST10867 4.8 2015-03-03T09:52:26Z Prokka suppressed 27 GPS_ZA_2510-sc-2022848 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANQQ01 Scaffold SOURCE_DATABASE_REFSEQ South Africa 2019-05-16 GPSC458 species_match 98.79 SAMEA104154810 3 Streptococcus pneumoniae 92.38 Streptococcus pneumoniae PRJEB3084 3 na 198430 type Streptococcus pneumoniae 2019-05-12 18A 18A Homo sapiens 2065 Streptococcus pneumoniae Streptococcus pneumoniae ERS1813828 SC 2013 2017-08-10T16:10:36.913 2065966 92.38 1313 2115 Streptococcus pneumoniae 2024-02-06T15:51:22.000 2065966 2245STDY6655147 198430 2065966 CSF Homo sapiens MENINGITIS from large multi-isolate project ST241 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901300555.1 type Streptococcus pneumoniae CSF 98.83 ERC000011 OK 40 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAXNR000000000.1 2017-08-08T13:54:42Z GCA_901300555.1 haploid public 73845e60-c37a-11e6-b158-3c4a9275d6c8 90.41 19 2017-08-10T17:10:48.607 GCA_001457635.1 821282 50 21999_8#100 73845e60-c37a-11e6-b158-3c4a9275d6c8 Brazil 21999_8#100 SAMEA104154810 1313 Generic.1.0 90.41 SRA category_na live 2019-04-18T15:32:15Z GPSC95 PRJEB3084 SC SC 19 2869050 2019-04-18T15:32:15Z 2017-08-08T00:00:00.000 0883_13 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAXNR01 2013 GPSC95 substr. ST241 2017-08-08T13:54:42Z Prokka current 19 73845e60-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAXNR01 Contig SOURCE_DATABASE_GENBANK Brazil 2019-05-12 GPSC95 species_match 98.83 SAMEA104154765 4 Streptococcus pneumoniae 93.94 Streptococcus pneumoniae PRJEB3084 4 na 201809 type Streptococcus pneumoniae 2019-05-11 18A 18A Homo sapiens 2002 Streptococcus pneumoniae Streptococcus pneumoniae ERS1813783 SC 2013 2017-08-10T16:10:35.190 2024488 93.94 1313 2051 Streptococcus pneumoniae 2024-02-06T15:51:21.000 2024777 2245STDY6655100 197012 2024488 blood Homo sapiens BACTERAEMIA from large multi-isolate project ST241 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901297935.1 type Streptococcus pneumoniae blood 98.83 ERC000011 OK 40 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAXDS000000000.1 2017-08-08T13:54:44Z GCA_901297935.1 haploid public 71482a00-c37a-11e6-b158-3c4a9275d6c8 90.09 19 2017-08-10T17:10:47.363 GCA_001457635.1 804930 49 21999_8#54 71482a00-c37a-11e6-b158-3c4a9275d6c8 Brazil 21999_8#54 SAMEA104154765 1313 Generic.1.0 90.09 SRA category_na live 2019-04-18T15:32:14Z GPSC95 PRJEB3084 SC SC 18 2869003 2019-04-18T15:32:14Z 2017-08-08T00:00:00.000 0477_13 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAXDS01 2013 GPSC95 substr. ST241 2017-08-08T13:54:44Z Prokka current 18 71482a00-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAXDS01 Scaffold SOURCE_DATABASE_GENBANK Brazil 2019-05-11 GPSC95 species_match 98.83 SAMEA104154801 5 Streptococcus pneumoniae 92.18 Streptococcus pneumoniae PRJEB3084 5 na 196398 type Streptococcus pneumoniae 2019-05-12 18A 18A Homo sapiens 2071 Streptococcus pneumoniae Streptococcus pneumoniae ERS1813819 SC 2013 2017-08-10T16:10:36.726 2070200 92.18 1313 2121 Streptococcus pneumoniae 2024-02-06T15:51:22.000 2070200 2245STDY6655134 196398 2070198 blood Homo sapiens BACTERAEMIA from large multi-isolate project ST241 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901299685.1 type Streptococcus pneumoniae blood 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAXKB000000000.1 2017-08-08T13:54:44Z GCA_901299685.1 haploid public 72d6b940-c37a-11e6-b158-3c4a9275d6c8 90.4 21 2017-08-10T17:10:48.333 GCA_001457635.1 822838 50 21999_8#87 72d6b940-c37a-11e6-b158-3c4a9275d6c8 Brazil 21999_8#87 SAMEA104154801 1313 Generic.1.0 90.4 SRA category_na live 2019-04-18T15:32:14Z GPSC95 PRJEB3084 SC SC 21 2869037 2019-04-18T15:32:14Z 2017-08-08T00:00:00.000 0771_13 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAXKB01 2013 GPSC95 substr. ST241 2017-08-08T13:54:44Z Prokka current 21 72d6b940-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAXKB01 Contig SOURCE_DATABASE_GENBANK Brazil 2019-05-12 GPSC95 species_match 98.83 SAMEA104154678 3 Streptococcus pneumoniae 93.63 Streptococcus pneumoniae PRJEB3084 3 na 195681 type Streptococcus pneumoniae 2019-05-11 18A 18A Homo sapiens 2067 Streptococcus pneumoniae Streptococcus pneumoniae ERS1813696 SC 2012 2017-08-10T16:10:33.280 2067573 93.63 1313 2118 Streptococcus pneumoniae 2024-02-06T15:51:16.000 2067905 2245STDY6655013 195681 2067571 CSF Homo sapiens MENINGITIS from large multi-isolate project ST241 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901293895.1 type Streptococcus pneumoniae CSF 98.74 ERC000011 OK 40 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWOG000000000.1 2017-08-08T13:54:41Z GCA_901293895.1 haploid public 67a79080-c37a-11e6-b158-3c4a9275d6c8 88.22 20 2017-08-10T17:10:44.943 GCA_053203845.1 822270 51 21999_7#151 67a79080-c37a-11e6-b158-3c4a9275d6c8 Brazil 21999_7#151 SAMEA104154678 1313 Generic.1.0 88.22 SRA category_na live 2019-04-18T15:32:13Z GPSC95 PRJEB3084 SC SC 19 2868916 2019-04-18T15:32:13Z 2017-08-08T00:00:00.000 0880_12 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWOG01 2012 GPSC95 substr. ST241 2017-08-08T13:54:41Z Prokka current 19 67a79080-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWOG01 Scaffold SOURCE_DATABASE_GENBANK Brazil 2019-05-11 GPSC95 species_match 98.74 SAMEA104035853 5 Streptococcus pneumoniae 93.98 Streptococcus pneumoniae PRJEB3084 5 na 178409 type Streptococcus pneumoniae 2019-05-11 18A 18A Homo sapiens 1999 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699746 SC 2006 2017-08-10T16:10:05.266 2022916 93.98 1313 2049 Streptococcus pneumoniae 2024-02-06T15:52:27.000 2022927 2245STDY6835931 178409 2022916 blood/CSF Homo sapiens IPD from large multi-isolate project ST241 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901337135.1 type Streptococcus pneumoniae blood/CSF 98.76 ERC000011 OK 40 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABCXP000000000.1 2017-08-08T13:54:45Z GCA_901337135.1 haploid public c3284150-1f66-11e7-b93e-3c4a9275d6c8 86.64 30 2017-08-10T17:10:05.053 GCA_053203845.1 804306 50 23164_8#75 c3284150-1f66-11e7-b93e-3c4a9275d6c8 Israel 23164_8#75 SAMEA104035853 1313 Generic.1.0 86.64 SRA category_na live 2019-04-18T15:32:32Z GPSC95 PRJEB3084 SC SC 29 3052606 2019-04-18T15:32:32Z 2017-08-08T00:00:00.000 9318 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABCXP01 2006 GPSC95 substr. ST241 2017-08-08T13:54:45Z Prokka current 29 c3284150-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABCXP01 Scaffold SOURCE_DATABASE_GENBANK Israel 2019-05-11 GPSC95 species_match 98.76 SAMEA2814359 4 Streptococcus pneumoniae 93.03 Streptococcus pneumoniae PRJEB3084 5 na 221250 type Streptococcus pneumoniae 2019-05-11 17F 17F Homo sapiens 2001 Streptococcus pneumoniae Streptococcus pneumoniae ERS566727 SC 2013 2015-03-04T08:09:50.980 2014789 93.03 1313 2046 Streptococcus pneumoniae 2024-02-06T15:56:22.000 2017047 162801 2014789 blood Homo sapiens IPD from large multi-isolate project ST11737 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901246605.1 type blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAPPD000000000.1 2015-03-03T09:52:26Z GCA_901246605.1 haploid public GPS_ZA_2571-sc-2138153 85.42 31 2018-03-10T19:37:56 GCA_053203845.1 798825 45 14936_4#54 GPS_ZA_2571-sc-2138153 South Africa 14936_4#54 SAMEA2814359 1313 Generic.1.0 85.42 SRA category_na live 2019-04-18T15:56:42Z GPSC61 PRJEB3084 SC SC 23 2138153 2019-04-18T15:56:42Z 2015-03-03T00:00:00.000 39103 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAPPD01 2013 GPSC61 substr. ST11737 2015-03-03T09:52:26Z Prokka current 23 GPS_ZA_2571-sc-2138153 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAPPD01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-11 GPSC61 species_match 98.79 SAMEA2814064 3 Streptococcus pneumoniae 93.29 Streptococcus pneumoniae PRJEB3084 5 na 209676 type Streptococcus pneumoniae 2019-05-10 17F 17F Homo sapiens 1984 Streptococcus pneumoniae Streptococcus pneumoniae ERS566432 SC 2012 2015-03-04T08:09:38.316 1996926 93.29 1313 2029 Streptococcus pneumoniae 2024-02-06T15:56:10.000 1998967 152634 1996926 blood Homo sapiens IPD from large multi-isolate project ST8835 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901277075.1 type blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAUCM000000000.1 2015-03-03T09:52:27Z GCA_901277075.1 haploid public GPS_ZA_2355-sc-2022548 84.9 24 2018-03-10T19:37:43 GCA_053203845.1 792941 45 14913_4#28 GPS_ZA_2355-sc-2022548 South Africa 14913_4#28 SAMEA2814064 1313 Generic.1.0 84.9 SRA category_na live 2019-04-18T15:56:40Z GPSC61 PRJEB3084 SC SC 17 2022548 2019-04-18T15:56:40Z 2015-03-03T00:00:00.000 34835 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAUCM01 2012 GPSC61 substr. ST8835 2015-03-03T09:52:27Z Prokka current 17 GPS_ZA_2355-sc-2022548 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAUCM01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC61 species_match 98.79 SAMEA2783642 3 Streptococcus pneumoniae 90.28 Streptococcus pneumoniae PRJEB3084 4 na 202281 type Streptococcus pneumoniae 2019-05-13 17F 17F Homo sapiens 2048 Streptococcus pneumoniae Streptococcus pneumoniae ERS553387 SC 2004 2015-04-09T08:07:22.090 2088102 90.28 1313 2091 Streptococcus pneumoniae 2024-02-06T15:52:49.000 2088620 150468 2088101 blood Homo sapiens bacteraemia from large multi-isolate project ST9526 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901340345.1 type blood 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABDJV000000000.1 2015-04-08T12:28:57Z GCA_901340345.1 haploid public GPS_MW_D28303_R1-sc-2022137 85.91 28 2018-03-10T19:42:05 GCA_053203845.1 827477 43 15277_3#71 GPS_MW_D28303_R1-sc-2022137 Malawi 15277_3#71 SAMEA2783642 1313 Generic.1.0 85.91 SRA category_na live 2019-04-18T15:32:37Z GPSC61 PRJEB3084 SC SC 26 2022137 2019-04-18T15:32:37Z 2015-04-08T00:00:00.000 GPS_MW_D28303_R1 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABDJV01 2004 GPSC61 substr. ST9526 2015-04-08T12:28:57Z Prokka current 26 GPS_MW_D28303_R1-sc-2022137 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABDJV01 Scaffold SOURCE_DATABASE_GENBANK Malawi 2019-05-13 GPSC61 species_match 98.81 SAMEA2434516 3 Streptococcus pneumoniae 93.43 Streptococcus pneumoniae PRJEB3084 5 na 274954 type Streptococcus pneumoniae 2019-05-10 17F 17F Homo sapiens 1982 Streptococcus pneumoniae Streptococcus pneumoniae ERS428693 SC 2005 2014-07-24T08:08:19.283 2005082 93.43 1313 2027 Streptococcus pneumoniae 2024-02-06T15:59:07.000 2007811 148621 2005082 CSF Homo sapiens Meningitis from large multi-isolate project ST10689 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901215765.1 type CSF 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAALAL000000000.1 2014-07-23T16:21:30Z GCA_901215765.1 haploid public SA_GPS_SP411-sc-1895580 88.74 31 2015-08-10T19:47:34 GCA_001457635.1 796389 45 12837_2#16 SA_GPS_SP411-sc-1895580 South Africa 12837_2#16 SAMEA2434516 1313 Generic.1.0 88.74 SRA category_na live 2019-04-18T16:01:19Z GPSC61 PRJEB3084 SC SC 20 1895580 2019-04-18T16:01:19Z 2014-07-23T00:00:00.000 3130 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAALAL01 2005 GPSC61 substr. ST10689 2014-07-23T16:21:30Z Prokka current 20 SA_GPS_SP411-sc-1895580 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAALAL01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC61 species_match 98.74 SAMEA3175890 6 Streptococcus pneumoniae 94.86 Streptococcus pneumoniae PRJEB3084 6 na 133810 type Streptococcus pneumoniae 2019-05-12 17F 17F Homo sapiens 2015 Streptococcus pneumoniae Streptococcus pneumoniae ERS628838 SC 1997 2015-05-13T13:08:44.573 2050784 94.86 1313 2060 Streptococcus pneumoniae 2024-02-06T15:54:31.000 2052986 133810 2050784 CSF Homo sapiens Meningitis from large multi-isolate project ST392 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901241105.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAOUA000000000.1 2015-05-12T09:14:27Z GCA_901241105.1 haploid public GPS_US_PATH6503-sc-2190932 88.65 36 2017-10-07T09:05:52 GCA_053203845.1 810744 45 15608_4#44 GPS_US_PATH6503-sc-2190932 Trinidad and Tobago 15608_4#44 SAMEA3175890 1313 Generic.1.0 88.65 SRA category_na live 2019-04-18T15:39:15Z GPSC49 PRJEB3084 SC SC 27 2190932 2019-04-18T15:39:15Z 2015-05-12T00:00:00.000 PATH6503 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAOUA01 1997 GPSC49 substr. ST392 2015-05-12T09:14:27Z Prokka current 27 GPS_US_PATH6503-sc-2190932 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAOUA01 Scaffold SOURCE_DATABASE_GENBANK Trinidad and Tobago 2019-05-12 GPSC49 species_match 98.86 SAMEA2796535 4 Streptococcus pneumoniae 95.3 Streptococcus pneumoniae PRJEB3084 6 suppressed na 240392 type Streptococcus pneumoniae 2019-05-10 17F 17F Homo sapiens 1977 Streptococcus pneumoniae Streptococcus pneumoniae ERS558146 SC 2004 2015-01-30T08:09:12.353 2001218 95.3 1313 2023 Streptococcus pneumoniae 2024-02-06T15:55:23.000 2002546 128301 2001207 blood Homo sapiens bacteremia from large multi-isolate project ST1794 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901230555.1 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANFK000000000.1 2015-01-27T09:20:52Z GCA_901230555.1 haploid public GPS_US_4214_05-sc-2138515 86.92 28 2018-03-10T19:32:57 GCA_053203845.1 793397 46 14673_2#32 GPS_US_4214_05-sc-2138515 USA 14673_2#32 SAMEA2796535 1313 GCF_901230555.1 Generic.1.0 86.92 SRA GCF_901230555.1 category_na live 2019-04-18T15:39:27Z GPSC61 PRJEB3084 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SC SC 22 2138515 2019-04-18T15:39:27Z 2015-01-27T00:00:00.000 4214_05 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANFK01 2004 GPSC61 substr. ST1794 2015-01-27T09:20:52Z Prokka current 22 GPS_US_4214_05-sc-2138515 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANFK01 Scaffold SOURCE_DATABASE_GENBANK USA 2019-05-10 GPSC61 species_match 98.86 SAMEA2796535 4 Streptococcus pneumoniae 95.3 Streptococcus pneumoniae PRJEB3084 6 current na Best-placed reference protein set; GeneMarkS-2+ 240392 type Streptococcus pneumoniae This record was removed by RefSeq staff. Please contact info@ncbi.nlm.nih.gov for further details. Reason: surveillance assembly 2019-05-23 17F 17F Homo sapiens 1943 Streptococcus pneumoniae Streptococcus pneumoniae ERS558146 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2004 2015-01-30T08:09:12.353 2001218 95.3 1313 2166 Streptococcus pneumoniae 2024-02-06T15:55:23.000 2002546 128301 blood Homo sapiens bacteremia from large multi-isolate project 172 ST1794 EBI 100 GCA_053203845.1 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SLX Streptococcus pneumoniae GCF_901230555.1 type blood 98.86 ERC000011 OK Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANFK000000000.1 2015-01-27T09:20:52Z GCF_901230555.1 haploid public GPS_US_4214_05-sc-2138515 86.92 28 2018-03-10T19:32:57 GCA_053203845.1 51 14673_2#32 GPS_US_4214_05-sc-2138515 USA 14673_2#32 SAMEA2796535 1313 GCA_901230555.1 Generic.1.0 86.92 SRA GCA_901230555.1 category_na live 2019-04-18T15:39:27Z GPSC61 PRJEB3084 Annotation submitted by SC SC SC 22 2138515 2019-04-18T15:39:27Z 2015-01-27T00:00:00.000 4214_05 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANFK01 2004 GPSC61 substr. ST1794 4.8 2015-01-27T09:20:52Z Prokka suppressed 22 GPS_US_4214_05-sc-2138515 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANFK01 Scaffold SOURCE_DATABASE_REFSEQ USA 2019-05-10 GPSC61 species_match 98.86 SAMEA867950 4 Streptococcus pneumoniae 92.95 Streptococcus pneumoniae 1313 PRJEB2131 4 current na 163014 type Streptococcus pneumoniae 2016-02-12 18A 18A species Homo sapiens 2003 Streptococcus pneumoniae Streptococcus pneumoniae ERS006818 SC v1.2.4 2011-02-14T19:05:19.166 98.63 2028684 92.95 1313 2059 2024-02-05T21:33:16.000 2028684 163014 2028677 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900052885.1 type blood 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/FIWK00000000.1 2011-02-14T17:17:22Z GCA_900052885.1 haploid public D28531-sc-2010-05-07-30524 89.32 0.31 26 2015-08-07T13:27:31 GCA_001457635.1 805820 56 4564_2#2 D28531-sc-2010-05-07-30524 Malawi 4564_2#2 SAMEA867950 1313 GCF_900052885.1 Generic.1.0 89.32 SRA GCF_900052885.1 category_na live 2018-03-09T09:59:29Z D28531 PRJEB2131 GCF_900052885.1-RS_2026_02_10 SC SC 26 30524 2018-03-09T09:59:29Z 2011-02-14T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIWK01 D28531 2011-02-14T17:17:22Z Prokka current 26 D28531-sc-2010-05-07-30524 Generic Malawi pneumococcal genomic snapshot FIWK01 Contig SOURCE_DATABASE_GENBANK Malawi 2016-02-12 D28531 species_match 98.75 SAMEA867950 4 Streptococcus pneumoniae 92.95 Streptococcus pneumoniae 1313 PRJEB2131 4 current na Best-placed reference protein set; GeneMarkS-2+ 163014 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-10 18A 18A species Homo sapiens 1876 Streptococcus pneumoniae Streptococcus pneumoniae ERS006818 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq v1.2.4 2011-02-14T19:05:19.166 98.63 2028684 92.95 1313 2099 2024-02-05T21:33:16.000 2028684 163014 2028677 blood Homo sapiens Streptococcus pneumoniae Disease 164 EBI 100 GCA_001457635.1 GCF_900052885.1-RS_2026_02_10 SLX Streptococcus pneumoniae GCF_900052885.1 type blood 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/FIWK00000000.1 2011-02-14T17:17:22Z GCF_900052885.1 haploid public D28531-sc-2010-05-07-30524 89.32 0.31 26 2015-08-07T13:27:31 GCA_001457635.1 805820 59 4564_2#2 D28531-sc-2010-05-07-30524 Malawi 4564_2#2 SAMEA867950 1313 GCA_900052885.1 Generic.1.0 89.32 SRA GCA_900052885.1 category_na live 2018-03-09T09:59:29Z D28531 PRJEB2131 Annotation submitted by SC SC SC 26 30524 2018-03-09T09:59:29Z 2011-02-14T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIWK01 D28531 6.10 2011-02-14T17:17:22Z Prokka current 26 D28531-sc-2010-05-07-30524 Generic Malawi pneumococcal genomic snapshot FIWK01 Contig SOURCE_DATABASE_REFSEQ Malawi 2016-02-12 D28531 species_match 98.75 SAMEA2382697 6 Streptococcus pneumoniae 93.87 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 117717 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2027 Streptococcus pneumoniae Streptococcus pneumoniae ERS409022 SC 2006/2012 v1.2.4 2014-07-03T08:07:07.610 99.15 2072055 93.87 1313 2072 2024-02-06T06:58:13.000 2073573 116562 2072055 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900020865.1 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FDDI00000000.1 2014-07-02T15:07:58Z GCA_900020865.1 haploid public 2000391_II-sc-1869943 88.63 0.52 33 2018-03-10T19:05:12 GCA_053203845.1 819473 45 12673_7#57 2000391_II-sc-1869943 Netherlands 12673_7#57 SAMEA2382697 1313 GCF_900020865.1 Generic.1.0 88.63 SRA GCF_900020865.1 category_na live 2018-03-09T10:43:22Z 2842STDY5753238 PRJEB4909 GCF_900020865.1-RS_2025_09_28 SC SC 27 1869943 2018-03-09T10:43:22Z 2014-07-02T00:00:00.000 2000391_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDDI01 2006/2012 2842STDY5753238 2014-07-02T15:07:58Z Prokka current 27 2000391_II-sc-1869943 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDDI01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753238 species_match 98.86 SAMEA2382697 6 Streptococcus pneumoniae 93.87 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 117717 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1952 Streptococcus pneumoniae Streptococcus pneumoniae ERS409022 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-03T08:07:07.610 99.15 2072055 93.87 1313 2158 2024-02-06T06:58:13.000 2073573 116562 2072055 blood Homo sapiens Streptococcus pneumoniae Disease 155 EBI 100 GCA_053203845.1 GCF_900020865.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900020865.1 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FDDI00000000.1 2014-07-02T15:07:58Z GCF_900020865.1 haploid public 2000391_II-sc-1869943 88.63 0.52 33 2018-03-10T19:05:12 GCA_053203845.1 819473 51 12673_7#57 2000391_II-sc-1869943 Netherlands 12673_7#57 SAMEA2382697 1313 GCA_900020865.1 Generic.1.0 88.63 SRA GCA_900020865.1 category_na live 2018-03-09T10:43:22Z 2842STDY5753238 PRJEB4909 Annotation submitted by SC SC SC 27 1869943 2018-03-09T10:43:22Z 2014-07-02T00:00:00.000 2000391_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDDI01 2006/2012 2842STDY5753238 6.10 2014-07-02T15:07:58Z Prokka current 27 2000391_II-sc-1869943 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDDI01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753238 species_match 98.86 SAMEA2383170 6 Streptococcus pneumoniae 94.35 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 128643 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2013 Streptococcus pneumoniae Streptococcus pneumoniae ERS409495 SC 2006/2012 v1.2.4 2014-07-17T08:09:37.376 99.15 2050945 94.35 1313 2058 2024-02-06T06:53:18.000 2052731 102361 2050945 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900028695.1 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FEKK00000000.1 2014-07-16T11:40:13Z GCA_900028695.1 haploid public 2110252_II-sc-1870421 88.18 0.52 32 2018-03-10T19:06:29 GCA_053203845.1 811162 45 12754_3#55 2110252_II-sc-1870421 Netherlands 12754_3#55 SAMEA2383170 1313 GCF_900028695.1 Generic.1.0 88.18 SRA GCF_900028695.1 category_na live 2018-03-09T10:42:42Z 2842STDY5753716 PRJEB4909 GCF_900028695.1-RS_2026_01_25 SC SC 26 1870421 2018-03-09T10:42:42Z 2014-07-16T00:00:00.000 2110252_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEKK01 2006/2012 2842STDY5753716 2014-07-16T11:40:13Z Prokka current 26 2110252_II-sc-1870421 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEKK01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753716 species_match 98.85 SAMEA2383170 6 Streptococcus pneumoniae 94.35 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 128643 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1927 Streptococcus pneumoniae Streptococcus pneumoniae ERS409495 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:37.376 99.15 2050945 94.35 1313 2135 2024-02-06T06:53:18.000 2052731 102361 2050945 blood Homo sapiens Streptococcus pneumoniae Disease 156 EBI 100 GCA_053203845.1 GCF_900028695.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900028695.1 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FEKK00000000.1 2014-07-16T11:40:13Z GCF_900028695.1 haploid public 2110252_II-sc-1870421 88.18 0.52 32 2018-03-10T19:06:29 GCA_053203845.1 811162 52 12754_3#55 2110252_II-sc-1870421 Netherlands 12754_3#55 SAMEA2383170 1313 GCA_900028695.1 Generic.1.0 88.18 SRA GCA_900028695.1 category_na live 2018-03-09T10:42:42Z 2842STDY5753716 PRJEB4909 Annotation submitted by SC SC SC 26 1870421 2018-03-09T10:42:42Z 2014-07-16T00:00:00.000 2110252_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEKK01 2006/2012 2842STDY5753716 6.10 2014-07-16T11:40:13Z Prokka current 26 2110252_II-sc-1870421 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEKK01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753716 species_match 98.85 SAMEA1023975 9 Streptococcus pneumoniae 93.39 Streptococcus pneumoniae 1313 PRJEB2357 9 current na 84523 type Streptococcus pneumoniae 2015-07-28 18A 18A species Homo sapiens 1960 Streptococcus pneumoniae Streptococcus pneumoniae ERS019657 SC 2008-06-26 v1.2.4 2012-01-20T19:46:36.960 99.31 2014227 93.39 1313 2001 2024-02-05T16:30:23.000 2014250 84523 2014216 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001335495.1 type nasopharynx 98.91 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CFHE00000000.1 2011-10-11T09:20:04Z GCA_001335495.1 haploid public SMRU499-sc-2011-01-27-1060688 89.88 0.31 43 2016-01-29T08:05:25 GCA_001679515.1 800061 41 6631_6#19 SMRU499-sc-2011-01-27-1060688 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023975 1313 GCF_001335495.1 Generic.1.0 89.88 SRA GCF_001335495.1 category_na live 2018-03-09T09:53:05Z SMRU499 PRJEB2357 GCF_001335495.1-RS_2026_02_01 SC SC 42 2018-03-09T09:53:05Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFHE01 2008-06-26 18A 2011-10-11T09:20:04Z Prokka current 42 SMRU499-sc-2011-01-27-1060688 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFHE01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-01 SMRU499 species_match 98.91 SAMEA1023975 9 Streptococcus pneumoniae 93.39 Streptococcus pneumoniae 1313 PRJEB2357 9 current na Best-placed reference protein set; GeneMarkS-2+ 84523 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 18A 18A species Homo sapiens 1887 Streptococcus pneumoniae Streptococcus pneumoniae ERS019657 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-06-26 v1.2.4 2012-01-20T19:46:36.960 99.31 2014227 93.39 1313 2085 2024-02-05T16:30:23.000 2014250 84523 2014216 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 154 EBI 100 GCA_001679515.1 GCF_001335495.1-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_001335495.1 type nasopharynx 98.91 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CFHE00000000.1 2011-10-11T09:20:04Z GCF_001335495.1 haploid public SMRU499-sc-2011-01-27-1060688 89.88 0.31 43 2016-01-29T08:05:25 GCA_001679515.1 800061 44 6631_6#19 SMRU499-sc-2011-01-27-1060688 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023975 1313 GCA_001335495.1 Generic.1.0 89.88 SRA GCA_001335495.1 category_na live 2018-03-09T09:53:05Z SMRU499 PRJEB2357 Annotation submitted by SC SC SC 42 2018-03-09T09:53:05Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFHE01 2008-06-26 SMRU499 6.10 2011-10-11T09:20:04Z Prokka current 42 SMRU499-sc-2011-01-27-1060688 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFHE01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-01 SMRU499 species_match 98.91 SAMEA1028726 8 Streptococcus pneumoniae 93.6 Streptococcus pneumoniae 1313 PRJEB2479 8 current na 79479 type Streptococcus pneumoniae 2015-07-13 18A 18A species Homo sapiens 1966 Streptococcus pneumoniae Streptococcus pneumoniae ERS022123 SC 2010-04-13 v1.2.4 2012-01-20T20:11:53.410 99.31 2014475 93.6 1313 2005 2024-02-06T09:02:16.000 2014475 79479 2014464 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001100125.1 type nasopharynx 98.9 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLSS00000000.1 2012-01-16T15:10:28Z GCA_001100125.1 haploid public SMRU2613-sc-2011-01-27-1062826 90.09 0.31 48 2015-07-28T08:12:55 GCA_001679515.1 800180 39 6972_4#21 SMRU2613-sc-2011-01-27-1062826 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028726 1313 GCF_001100125.1 Generic.1.0 90.09 SRA GCF_001100125.1 category_na live 2018-03-09T11:41:52Z SMRU2613 PRJEB2479 GCF_001100125.1-RS_2026_02_01 SC SC 48 2018-03-09T11:41:52Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLSS01 2010-04-13 SMRU2613 2012-01-16T15:10:28Z Prokka current 48 SMRU2613-sc-2011-01-27-1062826 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLSS01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2613 species_match 98.9 SAMEA1028726 8 Streptococcus pneumoniae 93.6 Streptococcus pneumoniae 1313 PRJEB2479 8 current na Best-placed reference protein set; GeneMarkS-2+ 79479 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 18A 18A species Homo sapiens 1887 Streptococcus pneumoniae Streptococcus pneumoniae ERS022123 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-04-13 v1.2.4 2012-01-20T20:11:53.410 99.31 2014475 93.6 1313 2082 2024-02-06T09:02:16.000 2014475 79479 2014464 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 154 EBI 100 GCA_001679515.1 GCF_001100125.1-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_001100125.1 type nasopharynx 98.9 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLSS00000000.1 2012-01-16T15:10:28Z GCF_001100125.1 haploid public SMRU2613-sc-2011-01-27-1062826 90.09 0.31 48 2015-07-28T08:12:55 GCA_001679515.1 800180 41 6972_4#21 SMRU2613-sc-2011-01-27-1062826 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028726 1313 GCA_001100125.1 Generic.1.0 90.09 SRA GCA_001100125.1 category_na live 2018-03-09T11:41:52Z SMRU2613 PRJEB2479 Annotation submitted by SC SC SC 48 2018-03-09T11:41:52Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLSS01 2010-04-13 SMRU2613 6.10 2012-01-16T15:10:28Z Prokka current 48 SMRU2613-sc-2011-01-27-1062826 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLSS01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2613 species_match 98.9 SAMEA1025883 8 Streptococcus pneumoniae 92.62 Streptococcus pneumoniae 1313 PRJEB2397 9 current na 78825 type Streptococcus pneumoniae 2015-07-28 18A 18A species Homo sapiens 2036 Streptococcus pneumoniae Streptococcus pneumoniae ERS021380 SC 2009-08-28 v1.2.4 2012-01-20T20:02:53.176 99.31 2065675 92.62 1313 2077 2024-02-05T16:24:13.000 2065700 78825 2065652 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001343895.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CFBH00000000.1 2011-12-05T16:07:37Z GCA_001343895.1 haploid public SMRU1870-sc-2011-01-27-1062083 87.19 1.04 55 2015-07-28T08:12:05 GCA_053203845.1 820502 41 6823_1#22 SMRU1870-sc-2011-01-27-1062083 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025883 1313 GCF_001343895.1 Generic.1.0 87.19 SRA GCF_001343895.1 category_na live 2018-03-09T09:53:00Z SMRU1870 PRJEB2397 GCF_001343895.1-RS_2026_01_15 SC SC 53 2018-03-09T09:53:00Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFBH01 2009-08-28 SMRU1870 2011-12-05T16:07:37Z Prokka current 53 SMRU1870-sc-2011-01-27-1062083 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFBH01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-01 SMRU1870 species_match 98.76 SAMEA1025883 8 Streptococcus pneumoniae 92.62 Streptococcus pneumoniae 1313 PRJEB2397 9 current na Best-placed reference protein set; GeneMarkS-2+ 78825 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-15 18A 18A species Homo sapiens 1965 Streptococcus pneumoniae Streptococcus pneumoniae ERS021380 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-08-28 v1.2.4 2012-01-20T20:02:53.176 99.31 2065675 92.62 1313 2169 2024-02-05T16:24:13.000 2065700 78825 2065652 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 158 EBI 100 GCA_053203845.1 GCF_001343895.1-RS_2026_01_15 SLX Streptococcus pneumoniae GCF_001343895.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CFBH00000000.1 2011-12-05T16:07:37Z GCF_001343895.1 haploid public SMRU1870-sc-2011-01-27-1062083 87.19 1.04 55 2015-07-28T08:12:05 GCA_053203845.1 820502 46 6823_1#22 SMRU1870-sc-2011-01-27-1062083 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025883 1313 GCA_001343895.1 Generic.1.0 87.19 SRA GCA_001343895.1 category_na live 2018-03-09T09:53:00Z SMRU1870 PRJEB2397 Annotation submitted by SC SC SC 53 2018-03-09T09:53:00Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFBH01 2009-08-28 SMRU1870 6.10 2011-12-05T16:07:37Z Prokka current 53 SMRU1870-sc-2011-01-27-1062083 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFBH01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-01 SMRU1870 species_match 98.76 SAMEA2383240 5 Streptococcus pneumoniae 94.35 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 153480 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2055 Streptococcus pneumoniae Streptococcus pneumoniae ERS409565 SC 2006/2012 v1.2.4 2014-07-17T08:09:40.950 99.15 2074703 94.35 1313 2105 2024-02-06T06:54:30.000 2078501 78266 2074703 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900027385.1 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FENA00000000.1 2014-07-16T11:40:12Z GCA_900027385.1 haploid public 2120296_II-sc-1870492 89.21 0.52 39 2015-08-10T19:44:23 GCA_053203845.1 821436 50 12754_4#30 2120296_II-sc-1870492 Netherlands 12754_4#30 SAMEA2383240 1313 GCF_900027385.1 Generic.1.0 89.21 SRA GCF_900027385.1 category_na live 2018-03-09T10:42:59Z 2842STDY5753787 PRJEB4909 GCF_900027385.1-RS_2026_01_11 SC SC 24 1870492 2018-03-09T10:42:59Z 2014-07-16T00:00:00.000 2120296_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FENA01 2006/2012 2842STDY5753787 2014-07-16T11:40:12Z Prokka current 24 2120296_II-sc-1870492 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FENA01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753787 species_match 98.84 SAMEA2383240 5 Streptococcus pneumoniae 94.35 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 153480 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1981 Streptococcus pneumoniae Streptococcus pneumoniae ERS409565 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:40.950 99.15 2074703 94.35 1313 2194 2024-02-06T06:54:30.000 2078501 78266 2074703 blood Homo sapiens Streptococcus pneumoniae Disease 157 EBI 100 GCA_053203845.1 GCF_900027385.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900027385.1 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FENA00000000.1 2014-07-16T11:40:12Z GCF_900027385.1 haploid public 2120296_II-sc-1870492 89.21 0.52 39 2015-08-10T19:44:23 GCA_053203845.1 821436 56 12754_4#30 2120296_II-sc-1870492 Netherlands 12754_4#30 SAMEA2383240 1313 GCA_900027385.1 Generic.1.0 89.21 SRA GCA_900027385.1 category_na live 2018-03-09T10:42:59Z 2842STDY5753787 PRJEB4909 Annotation submitted by SC SC SC 24 1870492 2018-03-09T10:42:59Z 2014-07-16T00:00:00.000 2120296_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FENA01 2006/2012 2842STDY5753787 6.10 2014-07-16T11:40:12Z Prokka current 24 2120296_II-sc-1870492 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FENA01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753787 species_match 98.84 SAMEA2383113 9 Streptococcus pneumoniae 93.77 Streptococcus pneumoniae 1313 PRJEB4909 11 current na 91778 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2025 Streptococcus pneumoniae Streptococcus pneumoniae ERS409438 SC 2006/2012 v1.2.4 2014-07-17T08:09:33.316 99.31 2072925 93.77 1313 2071 2024-02-06T06:52:48.000 2075719 76996 2072925 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900026685.1 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FEIF00000000.1 2014-07-16T11:40:12Z GCA_900026685.1 haploid public 2100507_II-sc-1870363 88.58 0.52 50 2015-08-10T19:44:18 GCA_053203845.1 819573 46 12754_2#93 2100507_II-sc-1870363 Netherlands 12754_2#93 SAMEA2383113 1313 GCF_900026685.1 Generic.1.0 88.58 SRA GCF_900026685.1 category_na live 2018-03-09T10:42:36Z 2842STDY5753658 PRJEB4909 GCF_900026685.1-RS_2025_09_28 SC SC 39 1870363 2018-03-09T10:42:36Z 2014-07-16T00:00:00.000 2100507_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEIF01 2006/2012 2842STDY5753658 2014-07-16T11:40:12Z Prokka current 39 2100507_II-sc-1870363 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEIF01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753658 species_match 98.86 SAMEA2383113 9 Streptococcus pneumoniae 93.77 Streptococcus pneumoniae 1313 PRJEB4909 11 current na Best-placed reference protein set; GeneMarkS-2+ 91778 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1955 Streptococcus pneumoniae Streptococcus pneumoniae ERS409438 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:33.316 99.31 2072925 93.77 1313 2172 2024-02-06T06:52:48.000 2075719 76996 2072925 blood Homo sapiens Streptococcus pneumoniae Disease 165 EBI 100 GCA_053203845.1 GCF_900026685.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900026685.1 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FEIF00000000.1 2014-07-16T11:40:12Z GCF_900026685.1 haploid public 2100507_II-sc-1870363 88.58 0.52 50 2015-08-10T19:44:18 GCA_053203845.1 819573 52 12754_2#93 2100507_II-sc-1870363 Netherlands 12754_2#93 SAMEA2383113 1313 GCA_900026685.1 Generic.1.0 88.58 SRA GCA_900026685.1 category_na live 2018-03-09T10:42:36Z 2842STDY5753658 PRJEB4909 Annotation submitted by SC SC SC 39 1870363 2018-03-09T10:42:36Z 2014-07-16T00:00:00.000 2100507_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEIF01 2006/2012 2842STDY5753658 6.10 2014-07-16T11:40:12Z Prokka current 39 2100507_II-sc-1870363 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEIF01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753658 species_match 98.86 SAMEA1024150 11 Streptococcus pneumoniae 93.3 Streptococcus pneumoniae 1313 PRJEB2357 11 current na 65148 type Streptococcus pneumoniae 2015-07-11 18A 18A species Homo sapiens 1967 Streptococcus pneumoniae Streptococcus pneumoniae ERS019569 SC 2008-05-27 v1.2.4 2012-01-20T19:45:39.026 99.31 2016248 93.3 1313 2009 2024-02-06T09:03:47.000 2016248 65148 2016232 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001160485.1 type nasopharynx 98.91 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKID00000000.1 2011-10-11T09:20:06Z GCA_001160485.1 haploid public SMRU411-sc-2011-01-27-1060600 89.89 0.84 55 2016-01-29T08:05:22 GCA_001679515.1 801072 42 6631_3#3 SMRU411-sc-2011-01-27-1060600 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024150 1313 GCF_001160485.1 Generic.1.0 89.89 SRA GCF_001160485.1 category_na live 2018-03-09T12:02:29Z SMRU411 PRJEB2357 GCF_001160485.1-RS_2026_02_01 SC SC 55 2018-03-09T12:02:29Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKID01 2008-05-27 18A 2011-10-11T09:20:06Z Prokka current 55 SMRU411-sc-2011-01-27-1060600 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKID01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU411 species_match 98.91 SAMEA1024150 11 Streptococcus pneumoniae 93.3 Streptococcus pneumoniae 1313 PRJEB2357 11 current na Best-placed reference protein set; GeneMarkS-2+ 65148 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 18A 18A species Homo sapiens 1881 Streptococcus pneumoniae Streptococcus pneumoniae ERS019569 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-05-27 v1.2.4 2012-01-20T19:45:39.026 99.31 2016248 93.3 1313 2084 2024-02-06T09:03:47.000 2016248 65148 2016232 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 159 EBI 100 GCA_001679515.1 GCF_001160485.1-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_001160485.1 type nasopharynx 98.91 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKID00000000.1 2011-10-11T09:20:06Z GCF_001160485.1 haploid public SMRU411-sc-2011-01-27-1060600 89.89 0.84 55 2016-01-29T08:05:22 GCA_001679515.1 801072 44 6631_3#3 SMRU411-sc-2011-01-27-1060600 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024150 1313 GCA_001160485.1 Generic.1.0 89.89 SRA GCA_001160485.1 category_na live 2018-03-09T12:02:29Z SMRU411 PRJEB2357 Annotation submitted by SC SC SC 55 2018-03-09T12:02:29Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKID01 2008-05-27 SMRU411 6.10 2011-10-11T09:20:06Z Prokka current 55 SMRU411-sc-2011-01-27-1060600 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKID01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU411 species_match 98.91 SAMEA1024785 10 Streptococcus pneumoniae 90.16 Streptococcus pneumoniae 1313 PRJEB2393 10 current na 59168 type Streptococcus pneumoniae 2015-07-18 18A 18A species Homo sapiens 2063 Streptococcus pneumoniae Streptococcus pneumoniae ERS020179 SC 2008-08-18 v1.2.4 2012-01-20T19:49:48.450 99.2 2115121 90.16 1313 2100 2024-02-05T16:16:31.000 2115185 59168 2115098 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001156245.1 type nasopharynx 98.81 OK 39.5 Streptococcus pneumoniae 69.3105 https://www.ncbi.nlm.nih.gov/nuccore/CQZM00000000.1 2011-11-02T10:11:59Z GCA_001156245.1 haploid public SMRU669-sc-2011-01-27-1060858 90.34 0.47 75 2015-07-28T08:11:04 GCA_001457635.1 838693 37 6730_5#21 SMRU669-sc-2011-01-27-1060858 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024785 1313 GCF_001156245.1 Generic.1.0 90.34 SRA GCF_001156245.1 category_na live 2018-03-09T09:52:54Z SMRU669 PRJEB2393 GCF_001156245.1-RS_2026_01_19 SC SC 71 2018-03-09T09:52:54Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQZM01 2008-08-18 SMRU669 2011-11-02T10:11:59Z Prokka current 71 SMRU669-sc-2011-01-27-1060858 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQZM01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU669 species_match 98.81 SAMEA1024785 10 Streptococcus pneumoniae 90.16 Streptococcus pneumoniae 1313 PRJEB2393 10 current na Best-placed reference protein set; GeneMarkS-2+ 59168 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 18A 18A species Homo sapiens 1997 Streptococcus pneumoniae Streptococcus pneumoniae ERS020179 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-08-18 v1.2.4 2012-01-20T19:49:48.450 99.2 2115121 90.16 1313 2201 2024-02-05T16:16:31.000 2115185 59168 2115098 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 164 EBI 100 GCA_001457635.1 GCF_001156245.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001156245.1 type nasopharynx 98.81 OK 39.5 Streptococcus pneumoniae 69.3105 https://www.ncbi.nlm.nih.gov/nuccore/CQZM00000000.1 2011-11-02T10:11:59Z GCF_001156245.1 haploid public SMRU669-sc-2011-01-27-1060858 90.34 0.47 75 2015-07-28T08:11:04 GCA_001457635.1 838693 40 6730_5#21 SMRU669-sc-2011-01-27-1060858 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024785 1313 GCA_001156245.1 Generic.1.0 90.34 SRA GCA_001156245.1 category_na live 2018-03-09T09:52:54Z SMRU669 PRJEB2393 Annotation submitted by SC SC SC 71 2018-03-09T09:52:54Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQZM01 2008-08-18 SMRU669 6.10 2011-11-02T10:11:59Z Prokka current 71 SMRU669-sc-2011-01-27-1060858 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQZM01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU669 species_match 98.81 SAMEA3431351 1 Streptococcus pneumoniae 92.33 Streptococcus pneumoniae 1313 PRJEB31141 4 current na 2087640 type Streptococcus pneumoniae 2019-02-20 18C 18C species Homo sapiens 2046 Streptococcus pneumoniae Streptococcus pneumoniae ERS740636 WTSI 2001 v1.2.4 2016-01-20T08:06:43.973 98.85 2083613 92.33 1313 2096 Streptococcus pneumoniae 2024-02-06T15:51:44.000 2087640 243393 2083613 CSF Homo sapiens Streptococcus pneumoniae meningitis 1 ST542 EBI 155 GCA_053203845.1 Annotation submitted by WTSI SLX Streptococcus pneumoniae GCA_900692995.1 type CSF 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 38.2434 2016-01-19T09:16:43Z GCA_900692995.1 haploid public GPS_US_PATH405-sc-2296523 87.67 0.31 33 2017-10-07T09:05:53 GCA_053203845.1 824470 50 18090_1#92-2 GPS_US_PATH405-sc-2296523 Egypt 18090_1#92 SAMEA3431351 1313 GCF_900692995.1 Generic.1.0 87.67 SRA GCF_900692995.1 category_na live 2019-04-18T15:32:20Z GPSC68 PRJEB31141 GCF_900692995.1-RS_2026_02_12 WTSI SC 1 2296523 2019-04-18T15:32:20Z 2016-01-19T00:00:00.000 PATH405 2001 2245STDY6106637 2016-01-19T09:16:43Z velvet current 1 GPS_US_PATH405-sc-2296523 Generic Reference genome for Global Pneumococcal Sequence (GPS ) project Chromosome SOURCE_DATABASE_GENBANK Egypt 2019-02-20 GPSC68 species_match 98.75 SAMEA3431351 1 Streptococcus pneumoniae 92.33 Streptococcus pneumoniae 1313 PRJEB31141 4 current na Best-placed reference protein set; GeneMarkS-2+ 2087640 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-12 18C 18C species Homo sapiens 1898 Streptococcus pneumoniae Streptococcus pneumoniae ERS740636 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2001 v1.2.4 2016-01-20T08:06:43.973 98.85 2083613 92.33 1313 2142 Streptococcus pneumoniae 2024-02-06T15:51:44.000 2087640 243393 2083613 CSF Homo sapiens Streptococcus pneumoniae meningitis 192 1 ST542 EBI 155 GCA_053203845.1 GCF_900692995.1-RS_2026_02_12 SLX Streptococcus pneumoniae GCF_900692995.1 type CSF 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 38.2434 2016-01-19T09:16:43Z GCF_900692995.1 haploid public GPS_US_PATH405-sc-2296523 87.67 0.31 33 2017-10-07T09:05:53 GCA_053203845.1 824470 52 18090_1#92-2 GPS_US_PATH405-sc-2296523 Egypt 18090_1#92 SAMEA3431351 1313 GCA_900692995.1 Generic.1.0 87.67 SRA GCA_900692995.1 category_na live 2019-04-18T15:32:20Z GPSC68 PRJEB31141 Annotation submitted by WTSI WTSI SC 1 2296523 2019-04-18T15:32:20Z 2016-01-19T00:00:00.000 PATH405 2001 GPSC68 substr. ST542 6.10 2016-01-19T09:16:43Z velvet current 1 GPS_US_PATH405-sc-2296523 Generic Reference genome for Global Pneumococcal Sequence (GPS ) project Chromosome SOURCE_DATABASE_REFSEQ Egypt 2019-02-20 GPSC68 species_match 98.75 SAMEA2382830 4 Streptococcus pneumoniae 92.91 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 176095 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2082 Streptococcus pneumoniae Streptococcus pneumoniae ERS409155 SC 2006/2012 v1.2.4 2014-07-10T08:06:47.693 99.26 2086496 92.91 1313 2125 2024-02-06T06:46:09.000 2088542 108031 2086495 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900026275.1 type blood 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FDII00000000.1 2014-07-09T17:25:44Z GCA_900026275.1 haploid public 2061274_II-sc-1870077 88.35 0.31 35 2015-08-10T19:43:37 GCA_053203845.1 826576 43 12718_4#95 2061274_II-sc-1870077 Netherlands 12718_4#95 SAMEA2382830 1313 GCF_900026275.1 Generic.1.0 88.35 SRA GCF_900026275.1 category_na live 2018-03-09T10:41:36Z 2842STDY5753372 PRJEB4909 GCF_900026275.1-RS_2025_12_13 SC SC 25 1870077 2018-03-09T10:41:36Z 2014-07-09T00:00:00.000 2061274_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDII01 2006/2012 2842STDY5753372 2014-07-09T17:25:44Z Prokka current 25 2061274_II-sc-1870077 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDII01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753372 species_match 98.73 SAMEA2382830 4 Streptococcus pneumoniae 92.91 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 176095 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-13 species Homo sapiens 1979 Streptococcus pneumoniae Streptococcus pneumoniae ERS409155 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-10T08:06:47.693 99.26 2086496 92.91 1313 2188 2024-02-06T06:46:09.000 2088542 108031 2086495 blood Homo sapiens Streptococcus pneumoniae Disease 159 EBI 100 GCA_053203845.1 GCF_900026275.1-RS_2025_12_13 SLX Streptococcus pneumoniae GCF_900026275.1 type blood 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FDII00000000.1 2014-07-09T17:25:44Z GCF_900026275.1 haploid public 2061274_II-sc-1870077 88.35 0.31 35 2015-08-10T19:43:37 GCA_053203845.1 826576 50 12718_4#95 2061274_II-sc-1870077 Netherlands 12718_4#95 SAMEA2382830 1313 GCA_900026275.1 Generic.1.0 88.35 SRA GCA_900026275.1 category_na live 2018-03-09T10:41:36Z 2842STDY5753372 PRJEB4909 Annotation submitted by SC SC SC 25 1870077 2018-03-09T10:41:36Z 2014-07-09T00:00:00.000 2061274_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDII01 2006/2012 2842STDY5753372 6.10 2014-07-09T17:25:44Z Prokka current 25 2061274_II-sc-1870077 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDII01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753372 species_match 98.73 SAMEA2238569 4 Streptococcus pneumoniae 91.69 Streptococcus pneumoniae 1313 PRJEB4909 5 current na 176743 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2072 Streptococcus pneumoniae Streptococcus pneumoniae ERS367381 SC 2006/2012 v1.2.4 2014-05-07T08:34:40.513 98.94 2086941 91.69 1313 2112 2024-02-06T05:13:03.000 2088105 100933 2086940 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900017405.1 type CSF 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FECB00000000.1 2014-03-18T09:35:29Z GCA_900017405.1 haploid public 2081738-sc-2013-11-05T11:58:44Z-1749930 87.2 0.31 41 2015-08-10T19:24:18 GCA_053203845.1 827562 40 11861_1#6 2081738-sc-2013-11-05T11:58:44Z-1749930 Netherlands 11861_1#6 SAMEA2238569 1313 GCF_900017405.1 Generic.1.0 87.2 SRA GCF_900017405.1 category_na live 2018-03-09T10:28:41Z 2842STDY5643941 PRJEB4909 GCF_900017405.1-RS_2026_01_11 SC SC 36 1749930 2018-03-09T10:28:41Z 2014-03-18T00:00:00.000 2081738 https://www.ncbi.nlm.nih.gov/Traces/wgs/FECB01 2006/2012 2842STDY5643941 2014-03-18T09:35:29Z Prokka current 36 2081738-sc-2013-11-05T11:58:44Z-1749930 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FECB01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643941 species_match 98.73 SAMEA2238569 4 Streptococcus pneumoniae 91.69 Streptococcus pneumoniae 1313 PRJEB4909 5 current na Best-placed reference protein set; GeneMarkS-2+ 176743 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1989 Streptococcus pneumoniae Streptococcus pneumoniae ERS367381 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:40.513 98.94 2086941 91.69 1313 2201 2024-02-06T05:13:03.000 2088105 100933 2086940 CSF Homo sapiens Streptococcus pneumoniae Disease 165 EBI 100 GCA_053203845.1 GCF_900017405.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900017405.1 type CSF 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FECB00000000.1 2014-03-18T09:35:29Z GCF_900017405.1 haploid public 2081738-sc-2013-11-05T11:58:44Z-1749930 87.2 0.31 41 2015-08-10T19:24:18 GCA_053203845.1 827562 47 11861_1#6 2081738-sc-2013-11-05T11:58:44Z-1749930 Netherlands 11861_1#6 SAMEA2238569 1313 GCA_900017405.1 Generic.1.0 87.2 SRA GCA_900017405.1 category_na live 2018-03-09T10:28:41Z 2842STDY5643941 PRJEB4909 Annotation submitted by SC SC SC 36 1749930 2018-03-09T10:28:41Z 2014-03-18T00:00:00.000 2081738 https://www.ncbi.nlm.nih.gov/Traces/wgs/FECB01 2006/2012 2842STDY5643941 6.10 2014-03-18T09:35:29Z Prokka current 36 2081738-sc-2013-11-05T11:58:44Z-1749930 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FECB01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643941 species_match 98.73 SAMEA2238309 3 Streptococcus pneumoniae 92.93 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 203368 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2082 Streptococcus pneumoniae Streptococcus pneumoniae ERS367121 SC 2006/2012 v1.2.4 2014-05-07T08:34:14.726 99.26 2086624 92.93 1313 2127 2024-02-06T05:18:18.000 2089485 99874 2086624 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900021395.1 type CSF 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FDWD00000000.1 2014-03-18T09:35:30Z GCA_900021395.1 haploid public 2061274-sc-2013-11-05T11:54:22Z-1749667 88.37 0.31 34 2015-08-10T19:24:07 GCA_053203845.1 826657 45 11860_4#35 2061274-sc-2013-11-05T11:54:22Z-1749667 Netherlands 11860_4#35 SAMEA2238309 1313 GCF_900021395.1 Generic.1.0 88.37 SRA GCF_900021395.1 category_na live 2018-03-09T10:29:16Z 2842STDY5643678 PRJEB4909 GCF_900021395.1-RS_2025_09_21 SC SC 22 1749667 2018-03-09T10:29:16Z 2014-03-18T00:00:00.000 2061274 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDWD01 2006/2012 2842STDY5643678 2014-03-18T09:35:30Z Prokka current 22 2061274-sc-2013-11-05T11:54:22Z-1749667 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDWD01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643678 species_match 98.73 SAMEA2238309 3 Streptococcus pneumoniae 92.93 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 203368 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1980 Streptococcus pneumoniae Streptococcus pneumoniae ERS367121 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:14.726 99.26 2086624 92.93 1313 2189 2024-02-06T05:18:18.000 2089485 99874 2086624 CSF Homo sapiens Streptococcus pneumoniae Disease 157 EBI 100 GCA_053203845.1 GCF_900021395.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900021395.1 type CSF 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FDWD00000000.1 2014-03-18T09:35:30Z GCF_900021395.1 haploid public 2061274-sc-2013-11-05T11:54:22Z-1749667 88.37 0.31 34 2015-08-10T19:24:07 GCA_053203845.1 826657 52 11860_4#35 2061274-sc-2013-11-05T11:54:22Z-1749667 Netherlands 11860_4#35 SAMEA2238309 1313 GCA_900021395.1 Generic.1.0 88.37 SRA GCA_900021395.1 category_na live 2018-03-09T10:29:16Z 2842STDY5643678 PRJEB4909 Annotation submitted by SC SC SC 22 1749667 2018-03-09T10:29:16Z 2014-03-18T00:00:00.000 2061274 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDWD01 2006/2012 2842STDY5643678 6.10 2014-03-18T09:35:30Z Prokka current 22 2061274-sc-2013-11-05T11:54:22Z-1749667 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDWD01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643678 species_match 98.73 SAMEA2382796 4 Streptococcus pneumoniae 94.39 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 171102 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1974 Streptococcus pneumoniae Streptococcus pneumoniae ERS409121 SC 2006/2012 v1.2.4 2014-07-10T08:06:46.126 99.06 2017060 94.39 1313 2019 2024-02-06T06:58:30.000 2019709 98463 2017059 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900030675.1 type blood 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/FDHC00000000.1 2014-07-09T17:25:44Z GCA_900030675.1 haploid public 2020055_II-sc-1870043 90.2 0.31 36 2015-08-10T19:43:35 GCA_001457635.1 800673 45 12718_4#61 2020055_II-sc-1870043 Netherlands 12718_4#61 SAMEA2382796 1313 GCF_900030675.1 Generic.1.0 90.2 SRA GCF_900030675.1 category_na live 2018-03-09T10:43:34Z 2842STDY5753338 PRJEB4909 GCF_900030675.1-RS_2025_09_28 SC SC 26 1870043 2018-03-09T10:43:34Z 2014-07-09T00:00:00.000 2020055_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDHC01 2006/2012 2842STDY5753338 2014-07-09T17:25:44Z Prokka current 26 2020055_II-sc-1870043 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDHC01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753338 species_match 98.78 SAMEA2382796 4 Streptococcus pneumoniae 94.39 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 171102 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1888 Streptococcus pneumoniae Streptococcus pneumoniae ERS409121 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-10T08:06:46.126 99.06 2017060 94.39 1313 2102 2024-02-06T06:58:30.000 2019709 98463 2017059 blood Homo sapiens Streptococcus pneumoniae Disease 163 EBI 100 GCA_001457635.1 GCF_900030675.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900030675.1 type blood 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/FDHC00000000.1 2014-07-09T17:25:44Z GCF_900030675.1 haploid public 2020055_II-sc-1870043 90.2 0.31 36 2015-08-10T19:43:35 GCA_001457635.1 800673 51 12718_4#61 2020055_II-sc-1870043 Netherlands 12718_4#61 SAMEA2382796 1313 GCA_900030675.1 Generic.1.0 90.2 SRA GCA_900030675.1 category_na live 2018-03-09T10:43:34Z 2842STDY5753338 PRJEB4909 Annotation submitted by SC SC SC 26 1870043 2018-03-09T10:43:34Z 2014-07-09T00:00:00.000 2020055_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDHC01 2006/2012 2842STDY5753338 6.10 2014-07-09T17:25:44Z Prokka current 26 2020055_II-sc-1870043 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDHC01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753338 species_match 98.78 SAMEA2239123 7 Streptococcus pneumoniae 91.42 Streptococcus pneumoniae 1313 PRJEB4909 9 current na 120415 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2138 Streptococcus pneumoniae Streptococcus pneumoniae ERS367935 SC 2006/2012 v1.2.4 2014-05-07T08:35:22.096 99.26 2124115 91.42 1313 2185 2024-02-06T05:02:53.000 2126940 93751 2124113 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900027085.1 type CSF 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FDRY00000000.1 2014-03-18T09:35:29Z GCA_900027085.1 haploid public 2000290-sc-2013-11-05T12:08:18Z-1750493 88.5 0.36 53 2015-08-10T19:24:43 GCA_053203845.1 843110 47 11860_7#84 2000290-sc-2013-11-05T12:08:18Z-1750493 Netherlands 11860_7#84 SAMEA2239123 1313 GCF_900027085.1 Generic.1.0 88.5 SRA GCF_900027085.1 category_na live 2018-03-09T10:27:38Z 2842STDY5644504 PRJEB4909 GCF_900027085.1-RS_2025_09_21 SC SC 43 1750493 2018-03-09T10:27:38Z 2014-03-18T00:00:00.000 2000290 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRY01 2006/2012 2842STDY5644504 2014-03-18T09:35:29Z Prokka current 43 2000290-sc-2013-11-05T12:08:18Z-1750493 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRY01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644504 species_match 98.75 SAMEA2239123 7 Streptococcus pneumoniae 91.42 Streptococcus pneumoniae 1313 PRJEB4909 9 current na Best-placed reference protein set; GeneMarkS-2+ 120415 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 2035 Streptococcus pneumoniae Streptococcus pneumoniae ERS367935 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:22.096 99.26 2124115 91.42 1313 2258 2024-02-06T05:02:53.000 2126940 93751 2124113 CSF Homo sapiens Streptococcus pneumoniae Disease 169 EBI 100 GCA_053203845.1 GCF_900027085.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900027085.1 type CSF 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FDRY00000000.1 2014-03-18T09:35:29Z GCF_900027085.1 haploid public 2000290-sc-2013-11-05T12:08:18Z-1750493 88.5 0.36 53 2015-08-10T19:24:43 GCA_053203845.1 843110 54 11860_7#84 2000290-sc-2013-11-05T12:08:18Z-1750493 Netherlands 11860_7#84 SAMEA2239123 1313 GCA_900027085.1 Generic.1.0 88.5 SRA GCA_900027085.1 category_na live 2018-03-09T10:27:38Z 2842STDY5644504 PRJEB4909 Annotation submitted by SC SC SC 43 1750493 2018-03-09T10:27:38Z 2014-03-18T00:00:00.000 2000290 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRY01 2006/2012 2842STDY5644504 6.10 2014-03-18T09:35:29Z Prokka current 43 2000290-sc-2013-11-05T12:08:18Z-1750493 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRY01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644504 species_match 98.75 SAMEA2382692 8 Streptococcus pneumoniae 91.51 Streptococcus pneumoniae 1313 PRJEB4909 9 current na 101244 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2135 Streptococcus pneumoniae Streptococcus pneumoniae ERS409017 SC 2006/2012 v1.2.4 2014-07-03T08:07:07.373 99.26 2124147 91.51 1313 2182 2024-02-06T06:44:44.000 2125470 91332 2124146 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900031825.1 type blood 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FDDD00000000.1 2014-07-02T15:07:58Z GCA_900031825.1 haploid public 2000290_II-sc-1869938 88.58 0.36 51 2015-08-10T19:42:15 GCA_053203845.1 843208 47 12673_7#52 2000290_II-sc-1869938 Netherlands 12673_7#52 SAMEA2382692 1313 GCF_900031825.1 Generic.1.0 88.58 SRA GCF_900031825.1 category_na live 2018-03-09T10:41:08Z 2842STDY5753233 PRJEB4909 GCF_900031825.1-RS_2025_09_21 SC SC 44 1869938 2018-03-09T10:41:08Z 2014-07-02T00:00:00.000 2000290_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDDD01 2006/2012 2842STDY5753233 2014-07-02T15:07:58Z Prokka current 44 2000290_II-sc-1869938 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDDD01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753233 species_match 98.76 SAMEA2382692 8 Streptococcus pneumoniae 91.51 Streptococcus pneumoniae 1313 PRJEB4909 9 current na Best-placed reference protein set; GeneMarkS-2+ 101244 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 2034 Streptococcus pneumoniae Streptococcus pneumoniae ERS409017 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-03T08:07:07.373 99.26 2124147 91.51 1313 2262 2024-02-06T06:44:44.000 2125470 91332 2124146 blood Homo sapiens Streptococcus pneumoniae Disease 174 EBI 100 GCA_053203845.1 GCF_900031825.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900031825.1 type blood 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FDDD00000000.1 2014-07-02T15:07:58Z GCF_900031825.1 haploid public 2000290_II-sc-1869938 88.58 0.36 51 2015-08-10T19:42:15 GCA_053203845.1 843208 54 12673_7#52 2000290_II-sc-1869938 Netherlands 12673_7#52 SAMEA2382692 1313 GCA_900031825.1 Generic.1.0 88.58 SRA GCA_900031825.1 category_na live 2018-03-09T10:41:08Z 2842STDY5753233 PRJEB4909 Annotation submitted by SC SC SC 44 1869938 2018-03-09T10:41:08Z 2014-07-02T00:00:00.000 2000290_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDDD01 2006/2012 2842STDY5753233 6.10 2014-07-02T15:07:58Z Prokka current 44 2000290_II-sc-1869938 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDDD01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753233 species_match 98.76 SAMEA1032684 7 Streptococcus pneumoniae 92.9 Streptococcus pneumoniae 1313 PRJEB2632 7 current na 88139 type Streptococcus pneumoniae 2015-07-28 18C 18C species Homo sapiens 2024 Streptococcus pneumoniae Streptococcus pneumoniae ERS044001 SC 2004 v1.2.3 2012-01-23T19:53:23.970 99.11 2081453 92.9 1313 2056 2024-02-05T17:29:20.000 2081453 88139 2081453 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001300615.2 type nasopharynx 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 61.1485 https://www.ncbi.nlm.nih.gov/nuccore/CHWS00000000.2 2012-01-19T13:56:13Z GCA_001300615.2 haploid public 3196-sc-2011-08-01T09:44:33Z-1250066 88.12 0.36 185 2015-09-10T08:19:55 GCA_053203845.1 825039 32 6999_1#13 3196-sc-2011-08-01T09:44:33Z-1250066 USA: Massachesetts Streptococcus pneumoniae SAMEA1032684 1313 GCF_001300615.1 Generic.1.0 88.12 SRA GCF_001300615.1 category_na live 2018-03-09T09:53:50Z R34-3196 PRJEB2632 GCF_001300615.1-RS_2025_03_31 SC SC 185 2018-03-09T09:53:50Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHWS02 2004 R34-3196 2012-01-19T13:56:13Z Velvet current 185 3196-sc-2011-08-01T09:44:33Z-1250066 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CHWS02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-28 3196 species_match 98.79 SAMEA1032684 7 Streptococcus pneumoniae 92.9 Streptococcus pneumoniae 1313 PRJEB2632 7 current na Best-placed reference protein set; GeneMarkS-2+ 88139 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-03-31 18C 18C species Homo sapiens 1973 Streptococcus pneumoniae Streptococcus pneumoniae ERS044001 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2004 v1.2.3 2012-01-23T19:53:23.970 99.11 2081453 92.9 1313 2196 2024-02-05T17:29:20.000 2081453 88139 2081453 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 170 EBI 100 GCA_053203845.1 GCF_001300615.1-RS_2025_03_31 SLX Streptococcus pneumoniae GCF_001300615.1 type nasopharynx 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 61.1485 https://www.ncbi.nlm.nih.gov/nuccore/CHWS00000000.2 2012-01-19T13:56:13Z GCF_001300615.1 haploid public 3196-sc-2011-08-01T09:44:33Z-1250066 88.12 0.36 185 2015-09-10T08:19:55 GCA_053203845.1 825039 53 6999_1#13 3196-sc-2011-08-01T09:44:33Z-1250066 USA: Massachesetts Streptococcus pneumoniae SAMEA1032684 1313 GCA_001300615.2 Generic.1.0 88.12 SRA GCA_001300615.2 category_na live 2018-03-09T09:53:50Z R34-3196 PRJEB2632 Annotation submitted by SC SC SC 185 2018-03-09T09:53:50Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHWS02 2004 R34-3196 6.10 2012-01-19T13:56:13Z Velvet current 185 3196-sc-2011-08-01T09:44:33Z-1250066 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CHWS02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-28 3196 species_match 98.79 SAMEA1025698 8 Streptococcus pneumoniae 90.33 Streptococcus pneumoniae 1313 PRJEB2397 9 current na 77447 type Streptococcus pneumoniae 2015-07-13 18C 18C species Homo sapiens 2039 Streptococcus pneumoniae Streptococcus pneumoniae ERS021647 SC 2009-10-05 v1.2.4 2012-01-20T20:06:04.350 99.1 2067769 90.33 1313 2082 2024-02-06T09:03:10.000 2067814 73583 2067728 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001173545.1 type nasopharynx 98.83 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CLGG00000000.1 2012-01-05T09:56:36Z GCA_001173545.1 haploid public SMRU2137-sc-2011-01-27-1062350 85.12 3.39 56 2015-07-28T08:12:28 GCA_053203845.1 817558 43 6925_4#1 SMRU2137-sc-2011-01-27-1062350 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025698 1313 GCF_001173545.1 Generic.1.0 85.12 SRA GCF_001173545.1 category_na live 2018-03-09T11:53:30Z SMRU2137 PRJEB2397 GCF_001173545.1-RS_2026_01_22 SC SC 53 2018-03-09T11:53:30Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLGG01 2009-10-05 SMRU2137 2012-01-05T09:56:36Z Prokka current 53 SMRU2137-sc-2011-01-27-1062350 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLGG01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2137 species_match 98.83 SAMEA1025698 8 Streptococcus pneumoniae 90.33 Streptococcus pneumoniae 1313 PRJEB2397 9 current na Best-placed reference protein set; GeneMarkS-2+ 77447 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 18C 18C species Homo sapiens 1953 Streptococcus pneumoniae Streptococcus pneumoniae ERS021647 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-10-05 v1.2.4 2012-01-20T20:06:04.350 99.1 2067769 90.33 1313 2168 2024-02-06T09:03:10.000 2067814 73583 2067728 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 170 EBI 100 GCA_053203845.1 GCF_001173545.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_001173545.1 type nasopharynx 98.83 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CLGG00000000.1 2012-01-05T09:56:36Z GCF_001173545.1 haploid public SMRU2137-sc-2011-01-27-1062350 85.12 3.39 56 2015-07-28T08:12:28 GCA_053203845.1 817558 45 6925_4#1 SMRU2137-sc-2011-01-27-1062350 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025698 1313 GCA_001173545.1 Generic.1.0 85.12 SRA GCA_001173545.1 category_na live 2018-03-09T11:53:30Z SMRU2137 PRJEB2397 Annotation submitted by SC SC SC 53 2018-03-09T11:53:30Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLGG01 2009-10-05 SMRU2137 6.10 2012-01-05T09:56:36Z Prokka current 53 SMRU2137-sc-2011-01-27-1062350 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLGG01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2137 species_match 98.83 SAMEA104155043 2 Streptococcus pneumoniae 92.43 Streptococcus pneumoniae PRJEB3084 2 na 512715 type Streptococcus pneumoniae 2019-05-11 18C 18C Homo sapiens 2043 Streptococcus pneumoniae Streptococcus pneumoniae ERS1814061 SC 2007 2017-08-10T16:10:42.130 2058168 92.43 1313 2093 Streptococcus pneumoniae 2024-02-06T15:51:57.000 2058168 2245STDY6655383 512715 2058168 blood Homo sapiens IPD from large multi-isolate project ST1381 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901316965.1 type Streptococcus pneumoniae blood 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAZYI000000000.1 2017-08-08T13:54:42Z GCA_901316965.1 haploid public 8fd1b310-c37a-11e6-b158-3c4a9275d6c8 86.69 18 2017-08-10T17:10:55.223 GCA_053203845.1 817059 50 22114_6#67 8fd1b310-c37a-11e6-b158-3c4a9275d6c8 Israel 22114_6#67 SAMEA104155043 1313 Generic.1.0 86.69 SRA category_na live 2019-04-18T15:32:23Z GPSC67 PRJEB3084 SC SC 18 2869286 2019-04-18T15:32:23Z 2017-08-08T00:00:00.000 181389 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAZYI01 2007 GPSC67 substr. ST1381 2017-08-08T13:54:42Z Prokka current 18 8fd1b310-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAZYI01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-11 GPSC67 species_match 98.76 SAMEA104154669 5 Streptococcus pneumoniae 93.18 Streptococcus pneumoniae PRJEB3084 5 na 184753 type Streptococcus pneumoniae 2019-05-14 18C 18C Homo sapiens 2030 Streptococcus pneumoniae Streptococcus pneumoniae ERS1813687 SC 2012 2017-08-10T16:10:33.090 2081145 93.18 1313 2082 Streptococcus pneumoniae 2024-02-06T15:51:16.000 2081145 2245STDY6655004 184753 2081144 CSF Homo sapiens MENINGITIS from large multi-isolate project ST193 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901293415.1 type Streptococcus pneumoniae CSF 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWMJ000000000.1 2017-08-08T13:54:42Z GCA_901293415.1 haploid public 67430250-c37a-11e6-b158-3c4a9275d6c8 88.38 30 2017-08-10T17:10:44.693 GCA_053203845.1 823321 52 21999_7#142 67430250-c37a-11e6-b158-3c4a9275d6c8 Brazil 21999_7#142 SAMEA104154669 1313 Generic.1.0 88.38 SRA category_na live 2019-04-18T15:32:13Z GPSC11 PRJEB3084 SC SC 30 2868907 2019-04-18T15:32:13Z 2017-08-08T00:00:00.000 0783_12 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWMJ01 2012 GPSC11 substr. ST193 2017-08-08T13:54:42Z Prokka current 30 67430250-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWMJ01 Contig SOURCE_DATABASE_GENBANK Brazil 2019-05-14 GPSC11 species_match 98.82 SAMEA971381 5 Streptococcus pneumoniae 92.52 Streptococcus pneumoniae 1313 PRJEB2110 5 current na 159537 type Streptococcus pneumoniae 2016-02-12 18F 18F species Homo sapiens 2007 Streptococcus pneumoniae Streptococcus pneumoniae ERS008361 SC v1.2.4 2011-02-14T19:06:56.223 99.31 2035002 92.52 1313 2058 2024-02-05T15:22:39.000 2035002 159537 2035001 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900052585.1 type blood 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FIWI00000000.1 2011-02-14T17:17:27Z GCA_900052585.1 haploid public D33733-sc-2010-05-07-40413 89.19 0.31 39 2015-08-07T13:27:56 GCA_001457635.1 805549 51 4995_8#5 D33733-sc-2010-05-07-40413 Malawi 4995_8#5 SAMEA971381 1313 GCF_900052585.1 Generic.1.0 89.19 SRA GCF_900052585.1 category_na live 2018-03-09T09:52:12Z D33733 PRJEB2110 GCF_900052585.1-RS_2026_02_10 SC SC 39 40413 2018-03-09T09:52:12Z 2011-02-14T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIWI01 D33733 2011-02-14T17:17:27Z Prokka current 39 D33733-sc-2010-05-07-40413 Generic Pneumococcal in morbus diversity (QEH, Blantyre, Malawi) FIWI01 Contig SOURCE_DATABASE_GENBANK Malawi 2016-02-12 D33733 species_match 98.72 SAMEA971381 5 Streptococcus pneumoniae 92.52 Streptococcus pneumoniae 1313 PRJEB2110 5 current na Best-placed reference protein set; GeneMarkS-2+ 159537 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-10 18F 18F species Homo sapiens 1913 Streptococcus pneumoniae Streptococcus pneumoniae ERS008361 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq v1.2.4 2011-02-14T19:06:56.223 99.31 2035002 92.52 1313 2119 2024-02-05T15:22:39.000 2035002 159537 2035001 blood Homo sapiens Streptococcus pneumoniae Disease 153 EBI 100 GCA_001457635.1 GCF_900052585.1-RS_2026_02_10 SLX Streptococcus pneumoniae GCF_900052585.1 type blood 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FIWI00000000.1 2011-02-14T17:17:27Z GCF_900052585.1 haploid public D33733-sc-2010-05-07-40413 89.19 0.31 39 2015-08-07T13:27:56 GCA_001457635.1 805549 53 4995_8#5 D33733-sc-2010-05-07-40413 Malawi 4995_8#5 SAMEA971381 1313 GCA_900052585.1 Generic.1.0 89.19 SRA GCA_900052585.1 category_na live 2018-03-09T09:52:12Z D33733 PRJEB2110 Annotation submitted by SC SC SC 39 40413 2018-03-09T09:52:12Z 2011-02-14T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIWI01 D33733 6.10 2011-02-14T17:17:27Z Prokka current 39 D33733-sc-2010-05-07-40413 Generic Pneumococcal in morbus diversity (QEH, Blantyre, Malawi) FIWI01 Contig SOURCE_DATABASE_REFSEQ Malawi 2016-02-12 D33733 species_match 98.72 SAMEA1024870 5 Streptococcus pneumoniae 91.19 Streptococcus pneumoniae 1313 PRJEB2393 5 current na 150405 type Streptococcus pneumoniae 2015-07-17 18C 18C species Homo sapiens 2018 Streptococcus pneumoniae Streptococcus pneumoniae ERS020625 SC 2009-01-01 v1.2.4 2012-01-20T19:54:44.903 98.68 2054383 91.19 1313 2055 2024-02-05T16:22:04.000 2054423 147654 2054362 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001094325.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 25.3377 https://www.ncbi.nlm.nih.gov/nuccore/CRER00000000.1 2011-11-02T10:11:58Z GCA_001094325.1 haploid public SMRU1115-sc-2011-01-27-1061328 85.38 0.86 38 2015-07-28T08:11:15 GCA_053203845.1 812571 37 6731_6#11 SMRU1115-sc-2011-01-27-1061328 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024870 1313 GCF_001094325.1 Generic.1.0 85.38 SRA GCF_001094325.1 category_na live 2018-03-09T09:52:58Z SMRU1115 PRJEB2393 GCF_001094325.1-RS_2026_01_19 SC SC 36 2018-03-09T09:52:58Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRER01 2009-01-01 SMRU1115 2011-11-02T10:11:58Z Prokka current 36 SMRU1115-sc-2011-01-27-1061328 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRER01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1115 species_match 98.8 SAMEA1024870 5 Streptococcus pneumoniae 91.19 Streptococcus pneumoniae 1313 PRJEB2393 5 current na Best-placed reference protein set; GeneMarkS-2+ 150405 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 18C 18C species Homo sapiens 1916 Streptococcus pneumoniae Streptococcus pneumoniae ERS020625 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-01-01 v1.2.4 2012-01-20T19:54:44.903 98.68 2054383 91.19 1313 2119 2024-02-05T16:22:04.000 2054423 147654 2054362 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 164 EBI 100 GCA_053203845.1 GCF_001094325.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001094325.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 25.3377 https://www.ncbi.nlm.nih.gov/nuccore/CRER00000000.1 2011-11-02T10:11:58Z GCF_001094325.1 haploid public SMRU1115-sc-2011-01-27-1061328 85.38 0.86 38 2015-07-28T08:11:15 GCA_053203845.1 812571 39 6731_6#11 SMRU1115-sc-2011-01-27-1061328 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024870 1313 GCA_001094325.1 Generic.1.0 85.38 SRA GCA_001094325.1 category_na live 2018-03-09T09:52:58Z SMRU1115 PRJEB2393 Annotation submitted by SC SC SC 36 2018-03-09T09:52:58Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRER01 2009-01-01 SMRU1115 6.10 2011-11-02T10:11:58Z Prokka current 36 SMRU1115-sc-2011-01-27-1061328 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRER01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1115 species_match 98.8 SAMEA1033744 6 Streptococcus pneumoniae 92.85 Streptococcus pneumoniae 1313 PRJEB2656 6 current na 135887 type Streptococcus pneumoniae 2016-02-12 18F 18F species Homo sapiens 1994 Streptococcus pneumoniae Streptococcus pneumoniae ERS050452 SC v1.2.4 2012-01-20T22:00:03.803 99.31 2022620 92.85 1313 2040 2024-02-05T17:46:36.000 2022779 111008 2022619 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900065855.1 type CSF 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FIWO00000000.1 2012-01-16T17:01:51Z GCA_900065855.1 haploid public C12675a-sc-2011-08-23T15:08:34Z-1261871 85.58 0.31 34 2015-08-07T15:39:29 GCA_053203845.1 800418 46 7004_3#51 C12675a-sc-2011-08-23T15:08:34Z-1261871 Malawi 7004_3#51 SAMEA1033744 1313 GCF_900065855.1 Generic.1.0 85.58 SRA GCF_900065855.1 category_na live 2018-03-09T09:54:05Z C12675a PRJEB2656 GCF_900065855.1-RS_2026_02_01 SC SC 33 1261871 2018-03-09T09:54:05Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIWO01 C12675a 2012-01-16T17:01:51Z Prokka current 33 C12675a-sc-2011-08-23T15:08:34Z-1261871 Generic Streptococcus_pneumoniae_samples_from_Malawi FIWO01 Scaffold SOURCE_DATABASE_GENBANK Malawi 2016-02-12 C12675a species_match 98.71 SAMEA1033744 6 Streptococcus pneumoniae 92.85 Streptococcus pneumoniae 1313 PRJEB2656 6 current na Best-placed reference protein set; GeneMarkS-2+ 135887 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 18F 18F species Homo sapiens 1896 Streptococcus pneumoniae Streptococcus pneumoniae ERS050452 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq v1.2.4 2012-01-20T22:00:03.803 99.31 2022620 92.85 1313 2087 2024-02-05T17:46:36.000 2022779 111008 2022619 CSF Homo sapiens Streptococcus pneumoniae Disease 143 EBI 100 GCA_053203845.1 GCF_900065855.1-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_900065855.1 type CSF 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FIWO00000000.1 2012-01-16T17:01:51Z GCF_900065855.1 haploid public C12675a-sc-2011-08-23T15:08:34Z-1261871 85.58 0.31 34 2015-08-07T15:39:29 GCA_053203845.1 800418 48 7004_3#51 C12675a-sc-2011-08-23T15:08:34Z-1261871 Malawi 7004_3#51 SAMEA1033744 1313 GCA_900065855.1 Generic.1.0 85.58 SRA GCA_900065855.1 category_na live 2018-03-09T09:54:05Z C12675a PRJEB2656 Annotation submitted by SC SC SC 33 1261871 2018-03-09T09:54:05Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIWO01 C12675a 6.10 2012-01-16T17:01:51Z Prokka current 33 C12675a-sc-2011-08-23T15:08:34Z-1261871 Generic Streptococcus_pneumoniae_samples_from_Malawi FIWO01 Scaffold SOURCE_DATABASE_REFSEQ Malawi 2016-02-12 C12675a species_match 98.71 SAMEA2383005 4 Streptococcus pneumoniae 91.69 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 185182 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2018 Streptococcus pneumoniae Streptococcus pneumoniae ERS409330 SC 2006/2012 v1.2.4 2014-07-17T08:09:27.420 98.98 2057645 91.69 1313 2063 2024-02-06T06:51:38.000 2060948 98473 2057644 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900029715.1 type blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 45.9062 https://www.ncbi.nlm.nih.gov/nuccore/FDOQ00000000.1 2014-07-16T11:40:11Z GCA_900029715.1 haploid public 2082171_II-sc-1870254 85.98 0.31 34 2015-08-10T19:44:13 GCA_053203845.1 816063 45 12754_1#80 2082171_II-sc-1870254 Netherlands 12754_1#80 SAMEA2383005 1313 GCF_900029715.1 Generic.1.0 85.98 SRA GCF_900029715.1 category_na live 2018-03-09T10:42:25Z 2842STDY5753549 PRJEB4909 GCF_900029715.1-RS_2025_09_21 SC SC 22 1870254 2018-03-09T10:42:25Z 2014-07-16T00:00:00.000 2082171_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDOQ01 2006/2012 2842STDY5753549 2014-07-16T11:40:11Z Prokka current 22 2082171_II-sc-1870254 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDOQ01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753549 species_match 98.8 SAMEA2383005 4 Streptococcus pneumoniae 91.69 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 185182 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1938 Streptococcus pneumoniae Streptococcus pneumoniae ERS409330 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:27.420 98.98 2057645 91.69 1313 2145 2024-02-06T06:51:38.000 2060948 98473 2057644 blood Homo sapiens Streptococcus pneumoniae Disease 156 EBI 100 GCA_053203845.1 GCF_900029715.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900029715.1 type blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 45.9062 https://www.ncbi.nlm.nih.gov/nuccore/FDOQ00000000.1 2014-07-16T11:40:11Z GCF_900029715.1 haploid public 2082171_II-sc-1870254 85.98 0.31 34 2015-08-10T19:44:13 GCA_053203845.1 816063 51 12754_1#80 2082171_II-sc-1870254 Netherlands 12754_1#80 SAMEA2383005 1313 GCA_900029715.1 Generic.1.0 85.98 SRA GCA_900029715.1 category_na live 2018-03-09T10:42:25Z 2842STDY5753549 PRJEB4909 Annotation submitted by SC SC SC 22 1870254 2018-03-09T10:42:25Z 2014-07-16T00:00:00.000 2082171_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDOQ01 2006/2012 2842STDY5753549 6.10 2014-07-16T11:40:11Z Prokka current 22 2082171_II-sc-1870254 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDOQ01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753549 species_match 98.8 SAMEA2203770 7 Streptococcus pneumoniae 90.82 Streptococcus pneumoniae 1313 PRJEB3084 8 current na 121107 type Streptococcus pneumoniae 2019-05-12 19A 19A species Homo sapiens 1991 Streptococcus pneumoniae Streptococcus pneumoniae ERS356274 SC 2009 v1.2.4 2014-02-28T18:05:40.606 99.26 2032962 90.82 1313 2037 Streptococcus pneumoniae 2024-02-06T15:54:47.000 2035057 95208 2032961 blood Homo sapiens Streptococcus pneumoniae Bacteremia ST320 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900044805.2 type blood 98.51 ERC000011 OK 40.0 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FFQU00000000.2 2014-02-18T09:20:03Z GCA_900044805.2 haploid public 2009209968-sc-2013-10-09T11:49:05Z-1712359 87.47 0.69 56 2015-08-10T19:05:33 GCA_001457635.1 808472 46 11679_1#3 2009209968-sc-2013-10-09T11:49:05Z-1712359 USA 11679_1#3 SAMEA2203770 1313 GCF_900044805.2 Generic.1.0 87.47 SRA GCF_900044805.2 category_na live 2019-04-18T15:39:18Z GPSC1 PRJEB3084 GCF_900044805.2-RS_2026_01_18 SC SC 46 1712359 2019-04-18T15:39:18Z 2014-02-18T00:00:00.000 2009209968 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFQU02 2009 2245STDY5608909 2014-02-18T09:20:03Z Prokka current 46 2009209968-sc-2013-10-09T11:49:05Z-1712359 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFQU02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC1 species_match 98.51 SAMEA2203770 7 Streptococcus pneumoniae 90.82 Streptococcus pneumoniae 1313 PRJEB3084 8 current na Best-placed reference protein set; GeneMarkS-2+ 121107 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 19A 19A species Homo sapiens 1910 Streptococcus pneumoniae Streptococcus pneumoniae ERS356274 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-02-28T18:05:40.606 99.26 2032962 90.82 1313 2123 Streptococcus pneumoniae 2024-02-06T15:54:47.000 2035057 95208 2032961 blood Homo sapiens Streptococcus pneumoniae Bacteremia 161 ST320 EBI 100 GCA_001457635.1 GCF_900044805.2-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_900044805.2 type blood 98.51 ERC000011 OK 40.0 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FFQU00000000.2 2014-02-18T09:20:03Z GCF_900044805.2 haploid public 2009209968-sc-2013-10-09T11:49:05Z-1712359 87.47 0.69 56 2015-08-10T19:05:33 GCA_001457635.1 808472 52 11679_1#3 2009209968-sc-2013-10-09T11:49:05Z-1712359 USA 11679_1#3 SAMEA2203770 1313 GCA_900044805.2 Generic.1.0 87.47 SRA GCA_900044805.2 category_na live 2019-04-18T15:39:18Z GPSC1 PRJEB3084 Annotation submitted by SC SC SC 46 1712359 2019-04-18T15:39:18Z 2014-02-18T00:00:00.000 2009209968 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFQU02 2009 GPSC1 substr. ST320 6.10 2014-02-18T09:20:03Z Prokka current 46 2009209968-sc-2013-10-09T11:49:05Z-1712359 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFQU02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC1 species_match 98.51 SAMEA1024688 7 Streptococcus pneumoniae 92.08 Streptococcus pneumoniae 1313 PRJEB2393 7 current na 92859 type Streptococcus pneumoniae 2015-07-24 18C 18C species Homo sapiens 2000 Streptococcus pneumoniae Streptococcus pneumoniae ERS020425 SC 2008-11-01 v1.2.4 2012-01-20T19:52:32.580 99.1 2048489 92.08 1313 2041 2024-02-05T16:19:38.000 2048489 92859 2048475 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001337815.1 type nasopharynx 98.79 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CHPB00000000.1 2011-10-25T09:28:13Z GCA_001337815.1 haploid public SMRU915-sc-2011-01-27-1061128 89.36 2.18 53 2015-07-28T08:10:56 GCA_001457635.1 810470 41 6680_5#3 SMRU915-sc-2011-01-27-1061128 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024688 1313 GCF_001337815.1 Generic.1.0 89.36 SRA GCF_001337815.1 category_na live 2018-03-09T09:52:56Z SMRU915 PRJEB2393 GCF_001337815.1-RS_2026_01_13 SC SC 53 2018-03-09T09:52:56Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHPB01 2008-11-01 SMRU915 2011-10-25T09:28:13Z Prokka current 53 SMRU915-sc-2011-01-27-1061128 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHPB01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU915 species_match 98.79 SAMEA1024688 7 Streptococcus pneumoniae 92.08 Streptococcus pneumoniae 1313 PRJEB2393 7 current na Best-placed reference protein set; GeneMarkS-2+ 92859 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-13 18C 18C species Homo sapiens 1920 Streptococcus pneumoniae Streptococcus pneumoniae ERS020425 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-11-01 v1.2.4 2012-01-20T19:52:32.580 99.1 2048489 92.08 1313 2118 2024-02-05T16:19:38.000 2048489 92859 2048475 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 155 EBI 100 GCA_001457635.1 GCF_001337815.1-RS_2026_01_13 SLX Streptococcus pneumoniae GCF_001337815.1 type nasopharynx 98.79 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CHPB00000000.1 2011-10-25T09:28:13Z GCF_001337815.1 haploid public SMRU915-sc-2011-01-27-1061128 89.36 2.18 53 2015-07-28T08:10:56 GCA_001457635.1 810470 43 6680_5#3 SMRU915-sc-2011-01-27-1061128 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024688 1313 GCA_001337815.1 Generic.1.0 89.36 SRA GCA_001337815.1 category_na live 2018-03-09T09:52:56Z SMRU915 PRJEB2393 Annotation submitted by SC SC SC 53 2018-03-09T09:52:56Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHPB01 2008-11-01 SMRU915 6.10 2011-10-25T09:28:13Z Prokka current 53 SMRU915-sc-2011-01-27-1061128 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHPB01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU915 species_match 98.79 SAMEA1028833 6 Streptococcus pneumoniae 87.07 Streptococcus pneumoniae 1313 PRJEB2479 7 current na 91305 type Streptococcus pneumoniae 2015-07-13 18F 18F species Homo sapiens 2092 Streptococcus pneumoniae Streptococcus pneumoniae ERS021973 SC 2010-02-24 v1.2.4 2012-04-15T02:39:03.050 99.04 2166819 87.07 1313 2135 2024-02-06T09:02:46.000 2166845 91305 2166800 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001084625.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 49.4655 https://www.ncbi.nlm.nih.gov/nuccore/CLPH00000000.1 2012-03-19T14:11:23Z GCA_001084625.1 haploid public SMRU2463-sc-2011-01-27-1062676 85.97 3.81 47 2015-07-28T08:13:23 GCA_053203845.1 858653 43 6949_3#15 SMRU2463-sc-2011-01-27-1062676 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028833 1313 GCF_001084625.1 Generic.1.0 85.97 SRA GCF_001084625.1 category_na live 2018-03-09T11:48:18Z SMRU2463 PRJEB2479 GCF_001084625.1-RS_2026_01_13 SC SC 45 2018-03-09T11:48:18Z 2012-03-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLPH01 2010-02-24 SMRU2463 2012-03-19T14:11:23Z Prokka current 45 SMRU2463-sc-2011-01-27-1062676 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLPH01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2463 species_match 98.76 SAMEA1028833 6 Streptococcus pneumoniae 87.07 Streptococcus pneumoniae 1313 PRJEB2479 7 current na Best-placed reference protein set; GeneMarkS-2+ 91305 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-13 18F 18F species Homo sapiens 2041 Streptococcus pneumoniae Streptococcus pneumoniae ERS021973 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-02-24 v1.2.4 2012-04-15T02:39:03.050 99.04 2166819 87.07 1313 2245 2024-02-06T09:02:46.000 2166845 91305 2166800 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 159 EBI 100 GCA_053203845.1 GCF_001084625.1-RS_2026_01_13 SLX Streptococcus pneumoniae GCF_001084625.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 49.4655 https://www.ncbi.nlm.nih.gov/nuccore/CLPH00000000.1 2012-03-19T14:11:23Z GCF_001084625.1 haploid public SMRU2463-sc-2011-01-27-1062676 85.97 3.81 47 2015-07-28T08:13:23 GCA_053203845.1 858653 45 6949_3#15 SMRU2463-sc-2011-01-27-1062676 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028833 1313 GCA_001084625.1 Generic.1.0 85.97 SRA GCA_001084625.1 category_na live 2018-03-09T11:48:18Z SMRU2463 PRJEB2479 Annotation submitted by SC SC SC 45 2018-03-09T11:48:18Z 2012-03-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLPH01 2010-02-24 SMRU2463 6.10 2012-03-19T14:11:23Z Prokka current 45 SMRU2463-sc-2011-01-27-1062676 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLPH01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2463 species_match 98.76 SAMEA2521536 5 Streptococcus pneumoniae 91.98 Streptococcus pneumoniae 1313 PRJEB3084 8 current na 140983 type Streptococcus pneumoniae 2019-05-14 19A 19A species Homo sapiens 2053 Streptococcus pneumoniae Streptococcus pneumoniae ERS455076 SC 2012 v1.2.4 2014-09-17T09:08:12.060 99.33 2087496 91.98 1313 2099 Streptococcus pneumoniae 2024-02-06T15:55:05.000 2091771 86303 2087495 blood Homo sapiens Streptococcus pneumoniae IPD ST667 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900048805.2 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 89.5333 https://www.ncbi.nlm.nih.gov/nuccore/FHPO00000000.2 2014-09-16T09:22:31Z GCA_900048805.2 haploid public 2013212457-sc-1946827 87.5 0.31 54 2015-08-10T19:57:07 GCA_053203845.1 827507 46 13414_1#80 2013212457-sc-1946827 USA 13414_1#80 SAMEA2521536 1313 GCF_900048805.2 Generic.1.0 87.5 SRA GCF_900048805.2 category_na live 2019-04-18T15:39:23Z GPSC4 PRJEB3084 GCF_900048805.2-RS_2026_01_12 SC SC 40 1946827 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013212457 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPO02 2012 2245STDY5819501 2014-09-16T09:22:31Z Prokka current 40 2013212457-sc-1946827 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPO02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-14 GPSC4 species_match 98.84 SAMEA2521536 5 Streptococcus pneumoniae 91.98 Streptococcus pneumoniae 1313 PRJEB3084 8 current na Best-placed reference protein set; GeneMarkS-2+ 140983 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-12 19A 19A species Homo sapiens 1951 Streptococcus pneumoniae Streptococcus pneumoniae ERS455076 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:12.060 99.33 2087496 91.98 1313 2163 Streptococcus pneumoniae 2024-02-06T15:55:05.000 2091771 86303 2087495 blood Homo sapiens Streptococcus pneumoniae IPD 159 ST667 EBI 100 GCA_053203845.1 GCF_900048805.2-RS_2026_01_12 SLX Streptococcus pneumoniae GCF_900048805.2 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 89.5333 https://www.ncbi.nlm.nih.gov/nuccore/FHPO00000000.2 2014-09-16T09:22:31Z GCF_900048805.2 haploid public 2013212457-sc-1946827 87.5 0.31 54 2015-08-10T19:57:07 GCA_053203845.1 827507 53 13414_1#80 2013212457-sc-1946827 USA 13414_1#80 SAMEA2521536 1313 GCA_900048805.2 Generic.1.0 87.5 SRA GCA_900048805.2 category_na live 2019-04-18T15:39:23Z GPSC4 PRJEB3084 Annotation submitted by SC SC SC 40 1946827 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013212457 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPO02 2012 GPSC4 substr. ST667 6.10 2014-09-16T09:22:31Z Prokka current 40 2013212457-sc-1946827 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPO02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-14 GPSC4 species_match 98.84 SAMEA1024534 9 Streptococcus pneumoniae 90.26 Streptococcus pneumoniae 1313 PRJEB2393 9 current na 81933 type Streptococcus pneumoniae 2015-07-18 19A 19A species Homo sapiens 2027 Streptococcus pneumoniae Streptococcus pneumoniae ERS020376 SC 2008-10-20 v1.2.4 2012-01-20T19:51:58.570 98.94 2086552 90.26 1313 2068 2024-02-06T09:04:11.000 2086621 81933 2086536 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001204735.1 type nasopharynx 98.83 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/CRMV00000000.1 2011-11-15T17:01:01Z GCA_001204735.1 haploid public SMRU866-sc-2011-01-27-1061079 85.82 0.52 68 2015-07-28T08:11:25 GCA_053203845.1 823786 41 6755_3#2 SMRU866-sc-2011-01-27-1061079 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024534 1313 GCF_001204735.1 Generic.1.0 85.82 SRA GCF_001204735.1 category_na live 2018-03-09T12:09:23Z SMRU866 PRJEB2393 GCF_001204735.1-RS_2026_01_24 SC SC 66 2018-03-09T12:09:23Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRMV01 2008-10-20 SMRU866 2011-11-15T17:01:01Z Prokka current 66 SMRU866-sc-2011-01-27-1061079 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRMV01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU866 species_match 98.83 SAMEA1024534 9 Streptococcus pneumoniae 90.26 Streptococcus pneumoniae 1313 PRJEB2393 9 current na Best-placed reference protein set; GeneMarkS-2+ 81933 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 19A 19A species Homo sapiens 1957 Streptococcus pneumoniae Streptococcus pneumoniae ERS020376 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-10-20 v1.2.4 2012-01-20T19:51:58.570 98.94 2086552 90.26 1313 2180 2024-02-06T09:04:11.000 2086621 81933 2086536 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 181 EBI 100 GCA_053203845.1 GCF_001204735.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_001204735.1 type nasopharynx 98.83 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/CRMV00000000.1 2011-11-15T17:01:01Z GCF_001204735.1 haploid public SMRU866-sc-2011-01-27-1061079 85.82 0.52 68 2015-07-28T08:11:25 GCA_053203845.1 823786 42 6755_3#2 SMRU866-sc-2011-01-27-1061079 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024534 1313 GCA_001204735.1 Generic.1.0 85.82 SRA GCA_001204735.1 category_na live 2018-03-09T12:09:23Z SMRU866 PRJEB2393 Annotation submitted by SC SC SC 66 2018-03-09T12:09:23Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRMV01 2008-10-20 SMRU866 6.10 2011-11-15T17:01:01Z Prokka current 66 SMRU866-sc-2011-01-27-1061079 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRMV01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU866 species_match 98.83 SAMEA1025027 10 Streptococcus pneumoniae 89.3 Streptococcus pneumoniae 1313 PRJEB2393 10 current na 66383 type Streptococcus pneumoniae 2015-07-18 18F 18F species Homo sapiens 2051 Streptococcus pneumoniae Streptococcus pneumoniae ERS020232 SC 2008-09-08 v1.2.4 2012-01-20T19:50:23.280 98.99 2110836 89.3 1313 2088 2024-02-06T09:03:54.000 2110869 66383 2110834 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001203515.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 46.3223 https://www.ncbi.nlm.nih.gov/nuccore/CRBI00000000.1 2011-11-02T10:11:57Z GCA_001203515.1 haploid public SMRU722-sc-2011-01-27-1060911 85.9 0.78 51 2015-07-28T08:11:07 GCA_053203845.1 835140 37 6730_8#2 SMRU722-sc-2011-01-27-1060911 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025027 1313 GCF_001203515.1 Generic.1.0 85.9 SRA GCF_001203515.1 category_na live 2018-03-09T12:04:14Z SMRU722 PRJEB2393 GCF_001203515.1-RS_2026_01_07 SC SC 49 2018-03-09T12:04:14Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRBI01 2008-09-08 SMRU722 2011-11-02T10:11:57Z Prokka current 49 SMRU722-sc-2011-01-27-1060911 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRBI01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU722 species_match 98.76 SAMEA1025027 10 Streptococcus pneumoniae 89.3 Streptococcus pneumoniae 1313 PRJEB2393 10 current na Best-placed reference protein set; GeneMarkS-2+ 66383 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-07 18F 18F species Homo sapiens 1997 Streptococcus pneumoniae Streptococcus pneumoniae ERS020232 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-09-08 v1.2.4 2012-01-20T19:50:23.280 98.99 2110836 89.3 1313 2187 2024-02-06T09:03:54.000 2110869 66383 2110834 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 151 EBI 100 GCA_053203845.1 GCF_001203515.1-RS_2026_01_07 SLX Streptococcus pneumoniae GCF_001203515.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 46.3223 https://www.ncbi.nlm.nih.gov/nuccore/CRBI00000000.1 2011-11-02T10:11:57Z GCF_001203515.1 haploid public SMRU722-sc-2011-01-27-1060911 85.9 0.78 51 2015-07-28T08:11:07 GCA_053203845.1 835140 39 6730_8#2 SMRU722-sc-2011-01-27-1060911 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025027 1313 GCA_001203515.1 Generic.1.0 85.9 SRA GCA_001203515.1 category_na live 2018-03-09T12:04:14Z SMRU722 PRJEB2393 Annotation submitted by SC SC SC 49 2018-03-09T12:04:14Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRBI01 2008-09-08 SMRU722 6.10 2011-11-02T10:11:57Z Prokka current 49 SMRU722-sc-2011-01-27-1060911 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRBI01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU722 species_match 98.76 SAMEA2239146 7 Streptococcus pneumoniae 91.59 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 128426 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2098 Streptococcus pneumoniae Streptococcus pneumoniae ERS367958 SC 2006/2012 v1.2.4 2014-05-07T08:35:23.740 99.31 2118563 91.59 1313 2141 2024-02-06T05:04:08.000 2120555 127090 2118554 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900022135.1 type CSF 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FDQV00000000.1 2014-03-18T09:35:29Z GCA_900022135.1 haploid public 2000830-sc-2013-11-05T12:08:41Z-1750517 88.43 0.31 43 2018-03-10T18:56:59 GCA_053203845.1 839463 43 11860_8#12 2000830-sc-2013-11-05T12:08:41Z-1750517 Netherlands 11860_8#12 SAMEA2239146 1313 GCF_900022135.1 Generic.1.0 88.43 SRA GCF_900022135.1 category_na live 2018-03-09T10:27:38Z 2842STDY5644528 PRJEB4909 GCF_900022135.1-RS_2026_01_11 SC SC 36 1750517 2018-03-09T10:27:38Z 2014-03-18T00:00:00.000 2000830 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDQV01 2006/2012 2842STDY5644528 2014-03-18T09:35:29Z Prokka current 36 2000830-sc-2013-11-05T12:08:41Z-1750517 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDQV01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644528 species_match 98.75 SAMEA2239146 7 Streptococcus pneumoniae 91.59 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 128426 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 2006 Streptococcus pneumoniae Streptococcus pneumoniae ERS367958 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:23.740 99.31 2118563 91.59 1313 2223 2024-02-06T05:04:08.000 2120555 127090 2118554 CSF Homo sapiens Streptococcus pneumoniae Disease 168 EBI 100 GCA_053203845.1 GCF_900022135.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900022135.1 type CSF 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FDQV00000000.1 2014-03-18T09:35:29Z GCF_900022135.1 haploid public 2000830-sc-2013-11-05T12:08:41Z-1750517 88.43 0.31 43 2018-03-10T18:56:59 GCA_053203845.1 839463 49 11860_8#12 2000830-sc-2013-11-05T12:08:41Z-1750517 Netherlands 11860_8#12 SAMEA2239146 1313 GCA_900022135.1 Generic.1.0 88.43 SRA GCA_900022135.1 category_na live 2018-03-09T10:27:38Z 2842STDY5644528 PRJEB4909 Annotation submitted by SC SC SC 36 1750517 2018-03-09T10:27:38Z 2014-03-18T00:00:00.000 2000830 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDQV01 2006/2012 2842STDY5644528 6.10 2014-03-18T09:35:29Z Prokka current 36 2000830-sc-2013-11-05T12:08:41Z-1750517 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDQV01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644528 species_match 98.75 SAMEA1025742 7 Streptococcus pneumoniae 90.24 Streptococcus pneumoniae 1313 PRJEB2397 7 current na 120706 type Streptococcus pneumoniae 2015-07-13 19A 19A species Homo sapiens 2042 Streptococcus pneumoniae Streptococcus pneumoniae ERS021419 SC 2009-09-10 v1.2.4 2012-01-20T20:03:19.310 98.94 2089642 90.24 1313 2090 2024-02-06T09:04:26.000 2089642 120706 2089619 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001093465.1 type nasopharynx 98.84 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/CKUK00000000.1 2011-12-05T16:07:36Z GCA_001093465.1 haploid public SMRU1909-sc-2011-01-27-1062122 85.93 1.25 42 2015-07-28T08:12:08 GCA_053203845.1 825613 48 6823_3#13 SMRU1909-sc-2011-01-27-1062122 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025742 1313 GCF_001093465.1 Generic.1.0 85.93 SRA GCF_001093465.1 category_na live 2018-03-09T12:14:00Z SMRU1909 PRJEB2397 GCF_001093465.1-RS_2026_01_25 SC SC 42 2018-03-09T12:14:00Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKUK01 2009-09-10 SMRU1909 2011-12-05T16:07:36Z Prokka current 42 SMRU1909-sc-2011-01-27-1062122 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKUK01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU1909 species_match 98.84 SAMEA1025742 7 Streptococcus pneumoniae 90.24 Streptococcus pneumoniae 1313 PRJEB2397 7 current na Best-placed reference protein set; GeneMarkS-2+ 120706 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 19A 19A species Homo sapiens 1937 Streptococcus pneumoniae Streptococcus pneumoniae ERS021419 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-09-10 v1.2.4 2012-01-20T20:03:19.310 98.94 2089642 90.24 1313 2170 2024-02-06T09:04:26.000 2089642 120706 2089619 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 183 EBI 100 GCA_053203845.1 GCF_001093465.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001093465.1 type nasopharynx 98.84 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/CKUK00000000.1 2011-12-05T16:07:36Z GCF_001093465.1 haploid public SMRU1909-sc-2011-01-27-1062122 85.93 1.25 42 2015-07-28T08:12:08 GCA_053203845.1 825613 50 6823_3#13 SMRU1909-sc-2011-01-27-1062122 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025742 1313 GCA_001093465.1 Generic.1.0 85.93 SRA GCA_001093465.1 category_na live 2018-03-09T12:14:00Z SMRU1909 PRJEB2397 Annotation submitted by SC SC SC 42 2018-03-09T12:14:00Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKUK01 2009-09-10 SMRU1909 6.10 2011-12-05T16:07:36Z Prokka current 42 SMRU1909-sc-2011-01-27-1062122 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKUK01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU1909 species_match 98.84 SAMEA2521614 5 Streptococcus pneumoniae 90.65 Streptococcus pneumoniae 1313 PRJEB3084 6 current na 121082 type Streptococcus pneumoniae 2019-05-12 19A 19A species Homo sapiens 2017 Streptococcus pneumoniae Streptococcus pneumoniae ERS455154 SC 2012 v1.2.4 2014-09-17T09:08:14.656 99.15 2044130 90.65 1313 2064 Streptococcus pneumoniae 2024-02-06T15:55:08.000 2046298 119244 2044128 blood Homo sapiens Streptococcus pneumoniae IPD ST320 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900063465.2 type blood 98.6 ERC000011 OK 40.0 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FHRY00000000.2 2014-09-16T09:22:33Z GCA_900063465.2 haploid public 2012220439-sc-1946906 87.78 0.31 42 2015-08-10T19:57:09 GCA_001457635.1 812564 47 13414_2#63 2012220439-sc-1946906 USA 13414_2#63 SAMEA2521614 1313 GCF_900063465.2 Generic.1.0 87.78 SRA GCF_900063465.2 category_na live 2019-04-18T15:39:23Z GPSC1 PRJEB3084 GCF_900063465.2-RS_2026_01_14 SC SC 35 1946906 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012220439 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHRY02 2012 2245STDY5819580 2014-09-16T09:22:33Z Prokka current 35 2012220439-sc-1946906 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHRY02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC1 species_match 98.6 SAMEA2521614 5 Streptococcus pneumoniae 90.65 Streptococcus pneumoniae 1313 PRJEB3084 6 current na Best-placed reference protein set; GeneMarkS-2+ 121082 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-14 19A 19A species Homo sapiens 1924 Streptococcus pneumoniae Streptococcus pneumoniae ERS455154 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:14.656 99.15 2044130 90.65 1313 2136 Streptococcus pneumoniae 2024-02-06T15:55:08.000 2046298 119244 2044128 blood Homo sapiens Streptococcus pneumoniae IPD 159 ST320 EBI 100 GCA_001457635.1 GCF_900063465.2-RS_2026_01_14 SLX Streptococcus pneumoniae GCF_900063465.2 type blood 98.6 ERC000011 OK 40.0 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FHRY00000000.2 2014-09-16T09:22:33Z GCF_900063465.2 haploid public 2012220439-sc-1946906 87.78 0.31 42 2015-08-10T19:57:09 GCA_001457635.1 812564 53 13414_2#63 2012220439-sc-1946906 USA 13414_2#63 SAMEA2521614 1313 GCA_900063465.2 Generic.1.0 87.78 SRA GCA_900063465.2 category_na live 2019-04-18T15:39:23Z GPSC1 PRJEB3084 Annotation submitted by SC SC SC 35 1946906 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012220439 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHRY02 2012 GPSC1 substr. ST320 6.10 2014-09-16T09:22:33Z Prokka current 35 2012220439-sc-1946906 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHRY02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC1 species_match 98.6 SAMEA1033744 6 Streptococcus pneumoniae 92.85 Streptococcus pneumoniae 1313 PRJEB2656 6 current na 135887 type Streptococcus pneumoniae 2016-02-12 18F 18F species Homo sapiens 1994 Streptococcus pneumoniae Streptococcus pneumoniae ERS050452 SC v1.2.4 2012-01-20T22:00:03.803 99.31 2022620 92.85 1313 2040 2024-02-05T17:46:36.000 2022779 111008 2022619 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900065855.1 type CSF 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FIWO00000000.1 2012-01-16T17:01:51Z GCA_900065855.1 haploid public C12675a-sc-2011-08-23T15:08:34Z-1261871 85.58 0.31 34 2015-08-07T15:39:29 GCA_053203845.1 800418 46 7004_3#51 C12675a-sc-2011-08-23T15:08:34Z-1261871 Malawi 7004_3#51 SAMEA1033744 1313 GCF_900065855.1 Generic.1.0 85.58 SRA GCF_900065855.1 category_na live 2018-03-09T09:54:05Z C12675a PRJEB2656 GCF_900065855.1-RS_2026_02_01 SC SC 33 1261871 2018-03-09T09:54:05Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIWO01 C12675a 2012-01-16T17:01:51Z Prokka current 33 C12675a-sc-2011-08-23T15:08:34Z-1261871 Generic Streptococcus_pneumoniae_samples_from_Malawi FIWO01 Scaffold SOURCE_DATABASE_GENBANK Malawi 2016-02-12 C12675a species_match 98.71 SAMEA1033744 6 Streptococcus pneumoniae 92.85 Streptococcus pneumoniae 1313 PRJEB2656 6 current na Best-placed reference protein set; GeneMarkS-2+ 135887 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 18F 18F species Homo sapiens 1896 Streptococcus pneumoniae Streptococcus pneumoniae ERS050452 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq v1.2.4 2012-01-20T22:00:03.803 99.31 2022620 92.85 1313 2087 2024-02-05T17:46:36.000 2022779 111008 2022619 CSF Homo sapiens Streptococcus pneumoniae Disease 143 EBI 100 GCA_053203845.1 GCF_900065855.1-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_900065855.1 type CSF 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FIWO00000000.1 2012-01-16T17:01:51Z GCF_900065855.1 haploid public C12675a-sc-2011-08-23T15:08:34Z-1261871 85.58 0.31 34 2015-08-07T15:39:29 GCA_053203845.1 800418 48 7004_3#51 C12675a-sc-2011-08-23T15:08:34Z-1261871 Malawi 7004_3#51 SAMEA1033744 1313 GCA_900065855.1 Generic.1.0 85.58 SRA GCA_900065855.1 category_na live 2018-03-09T09:54:05Z C12675a PRJEB2656 Annotation submitted by SC SC SC 33 1261871 2018-03-09T09:54:05Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIWO01 C12675a 6.10 2012-01-16T17:01:51Z Prokka current 33 C12675a-sc-2011-08-23T15:08:34Z-1261871 Generic Streptococcus_pneumoniae_samples_from_Malawi FIWO01 Scaffold SOURCE_DATABASE_REFSEQ Malawi 2016-02-12 C12675a species_match 98.71 SAMEA2521634 5 Streptococcus pneumoniae 91.2 Streptococcus pneumoniae 1313 PRJEB3084 7 current na 126227 type Streptococcus pneumoniae 2019-05-15 19A 19A species Homo sapiens 2064 Streptococcus pneumoniae Streptococcus pneumoniae ERS455174 SC 2012 v1.2.4 2014-09-17T09:08:15.433 99.31 2078209 91.2 1313 2111 Streptococcus pneumoniae 2024-02-06T15:55:04.000 2080624 109440 2078208 blood Homo sapiens Streptococcus pneumoniae IPD ST1451 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900052455.2 type blood 98.55 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHSO00000000.2 2014-09-16T09:22:32Z GCA_900052455.2 haploid public 2012211938-sc-1946926 86.37 0.31 45 2018-03-10T19:14:19 GCA_053203845.1 824319 47 13414_2#83 2012211938-sc-1946926 USA 13414_2#83 SAMEA2521634 1313 GCF_900052455.2 Generic.1.0 86.37 SRA GCF_900052455.2 category_na live 2019-04-18T15:39:23Z GPSC1 PRJEB3084 GCF_900052455.2-RS_2026_01_15 SC SC 34 1946926 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012211938 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSO02 2012 2245STDY5819600 2014-09-16T09:22:32Z Prokka current 34 2012211938-sc-1946926 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSO02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-15 GPSC1 species_match 98.55 SAMEA2521634 5 Streptococcus pneumoniae 91.2 Streptococcus pneumoniae 1313 PRJEB3084 7 current na Best-placed reference protein set; GeneMarkS-2+ 126227 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-15 19A 19A species Homo sapiens 1971 Streptococcus pneumoniae Streptococcus pneumoniae ERS455174 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:15.433 99.31 2078209 91.2 1313 2183 Streptococcus pneumoniae 2024-02-06T15:55:04.000 2080624 109440 2078208 blood Homo sapiens Streptococcus pneumoniae IPD 159 ST1451 EBI 100 GCA_053203845.1 GCF_900052455.2-RS_2026_01_15 SLX Streptococcus pneumoniae GCF_900052455.2 type blood 98.55 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FHSO00000000.2 2014-09-16T09:22:32Z GCF_900052455.2 haploid public 2012211938-sc-1946926 86.37 0.31 45 2018-03-10T19:14:19 GCA_053203845.1 824319 53 13414_2#83 2012211938-sc-1946926 USA 13414_2#83 SAMEA2521634 1313 GCA_900052455.2 Generic.1.0 86.37 SRA GCA_900052455.2 category_na live 2019-04-18T15:39:23Z GPSC1 PRJEB3084 Annotation submitted by SC SC SC 34 1946926 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012211938 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSO02 2012 GPSC1 substr. ST1451 6.10 2014-09-16T09:22:32Z Prokka current 34 2012211938-sc-1946926 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSO02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-15 GPSC1 species_match 98.55 SAMEA1025417 8 Streptococcus pneumoniae 89.22 Streptococcus pneumoniae 1313 PRJEB2395 8 current na 94588 type Streptococcus pneumoniae 2015-07-22 18C 18C species Homo sapiens 2042 Streptococcus pneumoniae Streptococcus pneumoniae ERS021107 SC 2009-06-01 v1.2.4 2012-01-20T20:00:02.963 99.04 2108561 89.22 1313 2082 2024-02-05T16:19:56.000 2108561 94588 2108557 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001194305.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 49.4655 https://www.ncbi.nlm.nih.gov/nuccore/CRWW00000000.1 2011-12-05T16:07:34Z GCA_001194305.1 haploid public SMRU1597-sc-2011-01-27-1061810 85.74 0.62 40 2015-07-28T08:12:02 GCA_053203845.1 834321 40 6807_2#13 SMRU1597-sc-2011-01-27-1061810 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025417 1313 GCF_001194305.1 Generic.1.0 85.74 SRA GCF_001194305.1 category_na live 2018-03-09T09:52:56Z SMRU1597 PRJEB2395 GCF_001194305.1-RS_2026_01_05 SC SC 40 2018-03-09T09:52:56Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRWW01 2009-06-01 SMRU1597 2011-12-05T16:07:34Z Prokka current 40 SMRU1597-sc-2011-01-27-1061810 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRWW01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-22 SMRU1597 species_match 98.76 SAMEA1025417 8 Streptococcus pneumoniae 89.22 Streptococcus pneumoniae 1313 PRJEB2395 8 current na Best-placed reference protein set; GeneMarkS-2+ 94588 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-05 18C 18C species Homo sapiens 1996 Streptococcus pneumoniae Streptococcus pneumoniae ERS021107 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-06-01 v1.2.4 2012-01-20T20:00:02.963 99.04 2108561 89.22 1313 2186 2024-02-05T16:19:56.000 2108561 94588 2108557 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 147 EBI 100 GCA_053203845.1 GCF_001194305.1-RS_2026_01_05 SLX Streptococcus pneumoniae GCF_001194305.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 49.4655 https://www.ncbi.nlm.nih.gov/nuccore/CRWW00000000.1 2011-12-05T16:07:34Z GCF_001194305.1 haploid public SMRU1597-sc-2011-01-27-1061810 85.74 0.62 40 2015-07-28T08:12:02 GCA_053203845.1 834321 43 6807_2#13 SMRU1597-sc-2011-01-27-1061810 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025417 1313 GCA_001194305.1 Generic.1.0 85.74 SRA GCA_001194305.1 category_na live 2018-03-09T09:52:56Z SMRU1597 PRJEB2395 Annotation submitted by SC SC SC 40 2018-03-09T09:52:56Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRWW01 2009-06-01 SMRU1597 6.10 2011-12-05T16:07:34Z Prokka current 40 SMRU1597-sc-2011-01-27-1061810 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRWW01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-22 SMRU1597 species_match 98.76 SAMEA2239201 6 Streptococcus pneumoniae 95.37 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 108946 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1983 Streptococcus pneumoniae Streptococcus pneumoniae ERS368013 SC 2006/2012 v1.2.4 2014-05-07T08:35:26.940 99.31 2021916 95.37 1313 2030 2024-02-06T05:05:07.000 2023333 91369 2021915 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900021315.1 type CSF 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FDSW00000000.1 2014-03-18T09:35:31Z GCA_900021315.1 haploid public 2002096-sc-2013-11-05T12:09:42Z-1750572 87.87 0.31 46 2015-08-10T19:24:47 GCA_053203845.1 802059 47 11860_8#69 2002096-sc-2013-11-05T12:09:42Z-1750572 Netherlands 11860_8#69 SAMEA2239201 1313 GCF_900021315.1 Generic.1.0 87.87 SRA GCF_900021315.1 category_na live 2018-03-09T10:27:47Z 2842STDY5644583 PRJEB4909 GCF_900021315.1-RS_2025_09_21 SC SC 41 1750572 2018-03-09T10:27:47Z 2014-03-18T00:00:00.000 2002096 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDSW01 2006/2012 2842STDY5644583 2014-03-18T09:35:31Z Prokka current 41 2002096-sc-2013-11-05T12:09:42Z-1750572 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDSW01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644583 species_match 98.77 SAMEA2239201 6 Streptococcus pneumoniae 95.37 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 108946 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1898 Streptococcus pneumoniae Streptococcus pneumoniae ERS368013 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:26.940 99.31 2021916 95.37 1313 2110 2024-02-06T05:05:07.000 2023333 91369 2021915 CSF Homo sapiens Streptococcus pneumoniae Disease 159 EBI 100 GCA_053203845.1 GCF_900021315.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900021315.1 type CSF 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FDSW00000000.1 2014-03-18T09:35:31Z GCF_900021315.1 haploid public 2002096-sc-2013-11-05T12:09:42Z-1750572 87.87 0.31 46 2015-08-10T19:24:47 GCA_053203845.1 802059 53 11860_8#69 2002096-sc-2013-11-05T12:09:42Z-1750572 Netherlands 11860_8#69 SAMEA2239201 1313 GCA_900021315.1 Generic.1.0 87.87 SRA GCA_900021315.1 category_na live 2018-03-09T10:27:47Z 2842STDY5644583 PRJEB4909 Annotation submitted by SC SC SC 41 1750572 2018-03-09T10:27:47Z 2014-03-18T00:00:00.000 2002096 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDSW01 2006/2012 2842STDY5644583 6.10 2014-03-18T09:35:31Z Prokka current 41 2002096-sc-2013-11-05T12:09:42Z-1750572 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDSW01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644583 species_match 98.77 SAMEA1025138 10 Streptococcus pneumoniae 92.03 Streptococcus pneumoniae 1313 PRJEB2395 10 current na 88636 type Streptococcus pneumoniae 2015-07-17 19F 19F species Homo sapiens 2000 Streptococcus pneumoniae Streptococcus pneumoniae ERS020768 SC 2009-02-19 v1.2.4 2012-01-20T19:56:20.793 99.31 2046493 92.03 1313 2041 2024-02-06T09:03:54.000 2046493 88636 2046473 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001140225.1 type nasopharynx 98.53 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRGM00000000.1 2011-11-15T09:28:18Z GCA_001140225.1 haploid public SMRU1258-sc-2011-01-27-1061471 85.82 0.62 62 2015-07-28T08:11:33 GCA_053203845.1 811848 41 6736_6#10 SMRU1258-sc-2011-01-27-1061471 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025138 1313 GCF_001140225.1 Generic.1.0 85.82 SRA GCF_001140225.1 category_na live 2018-03-09T12:04:15Z SMRU1258 PRJEB2395 GCF_001140225.1-RS_2026_01_15 SC SC 62 2018-03-09T12:04:15Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRGM01 2009-02-19 SMRU1258 2011-11-15T09:28:18Z Prokka current 62 SMRU1258-sc-2011-01-27-1061471 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRGM01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1258 species_match 98.53 SAMEA1025138 10 Streptococcus pneumoniae 92.03 Streptococcus pneumoniae 1313 PRJEB2395 10 current na Best-placed reference protein set; GeneMarkS-2+ 88636 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-15 19F 19F species Homo sapiens 1932 Streptococcus pneumoniae Streptococcus pneumoniae ERS020768 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-02-19 v1.2.4 2012-01-20T19:56:20.793 99.31 2046493 92.03 1313 2136 2024-02-06T09:03:54.000 2046493 88636 2046473 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 160 EBI 100 GCA_053203845.1 GCF_001140225.1-RS_2026_01_15 SLX Streptococcus pneumoniae GCF_001140225.1 type nasopharynx 98.53 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRGM00000000.1 2011-11-15T09:28:18Z GCF_001140225.1 haploid public SMRU1258-sc-2011-01-27-1061471 85.82 0.62 62 2015-07-28T08:11:33 GCA_053203845.1 811848 44 6736_6#10 SMRU1258-sc-2011-01-27-1061471 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025138 1313 GCA_001140225.1 Generic.1.0 85.82 SRA GCA_001140225.1 category_na live 2018-03-09T12:04:15Z SMRU1258 PRJEB2395 Annotation submitted by SC SC SC 62 2018-03-09T12:04:15Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRGM01 2009-02-19 SMRU1258 6.10 2011-11-15T09:28:18Z Prokka current 62 SMRU1258-sc-2011-01-27-1061471 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRGM01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1258 species_match 98.53 SAMEA1025674 8 Streptococcus pneumoniae 88.88 Streptococcus pneumoniae 1313 PRJEB2395 9 current na 100316 type Streptococcus pneumoniae 2015-07-18 19F 19F species Homo sapiens 2078 Streptococcus pneumoniae Streptococcus pneumoniae ERS021023 SC 2008-11-17 v1.2.4 2012-01-20T19:59:08.780 99.31 2095102 88.88 1313 2120 2024-02-06T09:04:00.000 2095113 87439 2095094 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001193495.1 type nasopharynx 98.64 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRJW00000000.1 2011-11-15T09:28:18Z GCA_001193495.1 haploid public SMRU1513-sc-2011-01-27-1061726 88.21 0.31 49 2015-07-28T08:11:44 GCA_001457635.1 831332 42 6753_3#1 SMRU1513-sc-2011-01-27-1061726 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025674 1313 GCF_001193495.1 Generic.1.0 88.21 SRA GCF_001193495.1 category_na live 2018-03-09T12:05:54Z SMRU1513 PRJEB2395 GCF_001193495.1-RS_2026_01_18 SC SC 48 2018-03-09T12:05:54Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRJW01 2008-11-17 SMRU1513 2011-11-15T09:28:18Z Prokka current 48 SMRU1513-sc-2011-01-27-1061726 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRJW01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1513 species_match 98.64 SAMEA1025674 8 Streptococcus pneumoniae 88.88 Streptococcus pneumoniae 1313 PRJEB2395 9 current na Best-placed reference protein set; GeneMarkS-2+ 100316 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 19F 19F species Homo sapiens 2000 Streptococcus pneumoniae Streptococcus pneumoniae ERS021023 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-11-17 v1.2.4 2012-01-20T19:59:08.780 99.31 2095102 88.88 1313 2206 2024-02-06T09:04:00.000 2095113 87439 2095094 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 162 EBI 100 GCA_001457635.1 GCF_001193495.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001193495.1 type nasopharynx 98.64 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRJW00000000.1 2011-11-15T09:28:18Z GCF_001193495.1 haploid public SMRU1513-sc-2011-01-27-1061726 88.21 0.31 49 2015-07-28T08:11:44 GCA_001457635.1 831332 44 6753_3#1 SMRU1513-sc-2011-01-27-1061726 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025674 1313 GCA_001193495.1 Generic.1.0 88.21 SRA GCA_001193495.1 category_na live 2018-03-09T12:05:54Z SMRU1513 PRJEB2395 Annotation submitted by SC SC SC 48 2018-03-09T12:05:54Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRJW01 2008-11-17 SMRU1513 6.10 2011-11-15T09:28:18Z Prokka current 48 SMRU1513-sc-2011-01-27-1061726 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRJW01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1513 species_match 98.64 SAMEA1024756 8 Streptococcus pneumoniae 88.33 Streptococcus pneumoniae 1313 PRJEB2393 8 current na 84870 type Streptococcus pneumoniae 2015-07-11 18F 18F species Homo sapiens 2082 Streptococcus pneumoniae Streptococcus pneumoniae ERS020493 SC 2008-11-19 v1.2.4 2012-01-20T19:53:16.030 99.04 2136102 88.33 1313 2124 2024-02-06T09:03:58.000 2136102 84870 2136094 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001145865.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 49.4655 https://www.ncbi.nlm.nih.gov/nuccore/CKQW00000000.1 2011-10-25T09:28:12Z GCA_001145865.1 haploid public SMRU983-sc-2011-01-27-1061196 85.99 2.33 42 2015-07-28T08:11:00 GCA_053203845.1 845445 42 6680_7#23 SMRU983-sc-2011-01-27-1061196 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024756 1313 GCF_001145865.1 Generic.1.0 85.99 SRA GCF_001145865.1 category_na live 2018-03-09T12:05:15Z SMRU983 PRJEB2393 GCF_001145865.1-RS_2026_01_06 SC SC 42 2018-03-09T12:05:15Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKQW01 2008-11-19 SMRU983 2011-10-25T09:28:12Z Prokka current 42 SMRU983-sc-2011-01-27-1061196 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKQW01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU983 species_match 98.75 SAMEA1024756 8 Streptococcus pneumoniae 88.33 Streptococcus pneumoniae 1313 PRJEB2393 8 current na Best-placed reference protein set; GeneMarkS-2+ 84870 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-06 18F 18F species Homo sapiens 2028 Streptococcus pneumoniae Streptococcus pneumoniae ERS020493 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-11-19 v1.2.4 2012-01-20T19:53:16.030 99.04 2136102 88.33 1313 2220 2024-02-06T09:03:58.000 2136102 84870 2136094 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 146 EBI 100 GCA_053203845.1 GCF_001145865.1-RS_2026_01_06 SLX Streptococcus pneumoniae GCF_001145865.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 49.4655 https://www.ncbi.nlm.nih.gov/nuccore/CKQW00000000.1 2011-10-25T09:28:12Z GCF_001145865.1 haploid public SMRU983-sc-2011-01-27-1061196 85.99 2.33 42 2015-07-28T08:11:00 GCA_053203845.1 845445 46 6680_7#23 SMRU983-sc-2011-01-27-1061196 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024756 1313 GCA_001145865.1 Generic.1.0 85.99 SRA GCA_001145865.1 category_na live 2018-03-09T12:05:15Z SMRU983 PRJEB2393 Annotation submitted by SC SC SC 42 2018-03-09T12:05:15Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKQW01 2008-11-19 SMRU983 6.10 2011-10-25T09:28:12Z Prokka current 42 SMRU983-sc-2011-01-27-1061196 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKQW01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU983 species_match 98.75 SAMEA2238739 7 Streptococcus pneumoniae 92.61 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 84563 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2066 Streptococcus pneumoniae Streptococcus pneumoniae ERS367551 SC 2006/2012 v1.2.4 2014-05-07T08:34:54.060 99.09 2070540 92.61 1313 2114 2024-02-06T05:02:45.000 2071941 73645 2070537 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900023955.1 type CSF 98.95 ERC000011 OK 39.5 Streptococcus pneumoniae 55.0989 https://www.ncbi.nlm.nih.gov/nuccore/FCPR00000000.1 2014-03-18T09:35:29Z GCA_900023955.1 haploid public 2100047-sc-2013-11-05T12:01:38Z-1750101 87.38 0.69 48 2015-08-10T19:24:24 GCA_053203845.1 820872 48 11861_2#78 2100047-sc-2013-11-05T12:01:38Z-1750101 Netherlands 11861_2#78 SAMEA2238739 1313 GCF_900023955.1 Generic.1.0 87.38 SRA GCF_900023955.1 category_na live 2018-03-09T10:27:35Z 2842STDY5644112 PRJEB4909 GCF_900023955.1-RS_2025_09_28 SC SC 43 1750101 2018-03-09T10:27:35Z 2014-03-18T00:00:00.000 2100047 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCPR01 2006/2012 2842STDY5644112 2014-03-18T09:35:29Z Prokka current 43 2100047-sc-2013-11-05T12:01:38Z-1750101 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCPR01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644112 species_match 98.95 SAMEA2238739 7 Streptococcus pneumoniae 92.61 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 84563 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1958 Streptococcus pneumoniae Streptococcus pneumoniae ERS367551 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:54.060 99.09 2070540 92.61 1313 2179 2024-02-06T05:02:45.000 2071941 73645 2070537 CSF Homo sapiens Streptococcus pneumoniae Disease 164 EBI 100 GCA_053203845.1 GCF_900023955.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900023955.1 type CSF 98.95 ERC000011 OK 39.5 Streptococcus pneumoniae 55.0989 https://www.ncbi.nlm.nih.gov/nuccore/FCPR00000000.1 2014-03-18T09:35:29Z GCF_900023955.1 haploid public 2100047-sc-2013-11-05T12:01:38Z-1750101 87.38 0.69 48 2015-08-10T19:24:24 GCA_053203845.1 820872 57 11861_2#78 2100047-sc-2013-11-05T12:01:38Z-1750101 Netherlands 11861_2#78 SAMEA2238739 1313 GCA_900023955.1 Generic.1.0 87.38 SRA GCA_900023955.1 category_na live 2018-03-09T10:27:35Z 2842STDY5644112 PRJEB4909 Annotation submitted by SC SC SC 43 1750101 2018-03-09T10:27:35Z 2014-03-18T00:00:00.000 2100047 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCPR01 2006/2012 2842STDY5644112 6.10 2014-03-18T09:35:29Z Prokka current 43 2100047-sc-2013-11-05T12:01:38Z-1750101 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCPR01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644112 species_match 98.95 SAMEA1025464 10 Streptococcus pneumoniae 88.95 Streptococcus pneumoniae 1313 PRJEB2395 11 current na 80076 type Streptococcus pneumoniae 2015-07-28 19F 19F species Homo sapiens 2070 Streptococcus pneumoniae Streptococcus pneumoniae ERS020783 SC 2009-02-21 v1.2.4 2012-01-20T19:56:31.340 97.74 2131078 88.95 1313 2109 2024-02-06T09:04:16.000 2131144 72437 2131059 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001342015.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 5.19173 https://www.ncbi.nlm.nih.gov/nuccore/CFBD00000000.1 2011-11-15T17:01:00Z GCA_001342015.1 haploid public SMRU1273-sc-2011-01-27-1061486 86.38 0.52 62 2015-07-28T08:11:34 GCA_053203845.1 838610 39 6736_7#1 SMRU1273-sc-2011-01-27-1061486 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025464 1313 GCF_001342015.1 Generic.1.0 86.38 SRA GCF_001342015.1 category_na live 2018-03-09T12:10:44Z SMRU1273 PRJEB2395 GCF_001342015.1-RS_2026_02_08 SC SC 60 2018-03-09T12:10:44Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFBD01 2009-02-21 SMRU1273 2011-11-15T17:01:00Z Prokka current 60 SMRU1273-sc-2011-01-27-1061486 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFBD01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-01 SMRU1273 species_match 98.75 SAMEA1025464 10 Streptococcus pneumoniae 88.95 Streptococcus pneumoniae 1313 PRJEB2395 11 current na Best-placed reference protein set; GeneMarkS-2+ 80076 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-08 19F 19F species Homo sapiens 1985 Streptococcus pneumoniae Streptococcus pneumoniae ERS020783 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-02-21 v1.2.4 2012-01-20T19:56:31.340 97.74 2131078 88.95 1313 2194 2024-02-06T09:04:16.000 2131144 72437 2131059 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 169 EBI 100 GCA_053203845.1 GCF_001342015.1-RS_2026_02_08 SLX Streptococcus pneumoniae GCF_001342015.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 5.19173 https://www.ncbi.nlm.nih.gov/nuccore/CFBD00000000.1 2011-11-15T17:01:00Z GCF_001342015.1 haploid public SMRU1273-sc-2011-01-27-1061486 86.38 0.52 62 2015-07-28T08:11:34 GCA_053203845.1 838610 40 6736_7#1 SMRU1273-sc-2011-01-27-1061486 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025464 1313 GCA_001342015.1 Generic.1.0 86.38 SRA GCA_001342015.1 category_na live 2018-03-09T12:10:44Z SMRU1273 PRJEB2395 Annotation submitted by SC SC SC 60 2018-03-09T12:10:44Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFBD01 2009-02-21 SMRU1273 6.10 2011-11-15T17:01:00Z Prokka current 60 SMRU1273-sc-2011-01-27-1061486 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFBD01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-01 SMRU1273 species_match 98.75 SAMEA1029139 11 Streptococcus pneumoniae 92.19 Streptococcus pneumoniae 1313 PRJEB2479 11 current na 63787 type Streptococcus pneumoniae 2015-07-14 19F 19F species Homo sapiens 2000 Streptococcus pneumoniae Streptococcus pneumoniae ERS022252 SC 2010-05-21 v1.2.4 2012-01-23T19:51:47.220 99.27 2041449 92.19 1313 2041 2024-02-06T09:02:20.000 2041449 63787 2041437 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001110085.1 type nasopharynx 98.52 OK 39.5 Streptococcus pneumoniae 77.6327 https://www.ncbi.nlm.nih.gov/nuccore/CMDS00000000.1 2012-01-19T13:56:00Z GCA_001110085.1 haploid public SMRU2742-sc-2011-01-27-1062955 85.77 0.36 63 2015-07-28T08:13:02 GCA_053203845.1 810051 41 7011_3#6 SMRU2742-sc-2011-01-27-1062955 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029139 1313 GCF_001110085.1 Generic.1.0 85.77 SRA GCF_001110085.1 category_na live 2018-03-09T11:42:57Z SMRU2742 PRJEB2479 GCF_001110085.1-RS_2026_01_18 SC SC 63 2018-03-09T11:42:57Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMDS01 2010-05-21 SMRU2742 2012-01-19T13:56:00Z Prokka current 63 SMRU2742-sc-2011-01-27-1062955 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMDS01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2742 species_match 98.52 SAMEA1029139 11 Streptococcus pneumoniae 92.19 Streptococcus pneumoniae 1313 PRJEB2479 11 current na Best-placed reference protein set; GeneMarkS-2+ 63787 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 19F 19F species Homo sapiens 1921 Streptococcus pneumoniae Streptococcus pneumoniae ERS022252 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-05-21 v1.2.4 2012-01-23T19:51:47.220 99.27 2041449 92.19 1313 2125 2024-02-06T09:02:20.000 2041449 63787 2041437 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 161 EBI 100 GCA_053203845.1 GCF_001110085.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001110085.1 type nasopharynx 98.52 OK 39.5 Streptococcus pneumoniae 77.6327 https://www.ncbi.nlm.nih.gov/nuccore/CMDS00000000.1 2012-01-19T13:56:00Z GCF_001110085.1 haploid public SMRU2742-sc-2011-01-27-1062955 85.77 0.36 63 2015-07-28T08:13:02 GCA_053203845.1 810051 43 7011_3#6 SMRU2742-sc-2011-01-27-1062955 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029139 1313 GCA_001110085.1 Generic.1.0 85.77 SRA GCA_001110085.1 category_na live 2018-03-09T11:42:57Z SMRU2742 PRJEB2479 Annotation submitted by SC SC SC 63 2018-03-09T11:42:57Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMDS01 2010-05-21 SMRU2742 6.10 2012-01-19T13:56:00Z Prokka current 63 SMRU2742-sc-2011-01-27-1062955 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMDS01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2742 species_match 98.52 SAMEA1026316 10 Streptococcus pneumoniae 91.0 Streptococcus pneumoniae 1313 PRJEB2417 10 current na 63580 type Streptococcus pneumoniae 2017-06-28 19F 19F species Homo sapiens 2035 Streptococcus pneumoniae ERS023189 SC 2008-02-08 v1.2.4 2011-09-13T21:54:55.876 97.12 2099815 91.0 1313 2077 2017-06-24T15:36:02.000 2099815 63580 2099814 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900190435.1 type Nasophaynx 98.75 OK 39.5 Streptococcus pneumoniae 3.62333 https://www.ncbi.nlm.nih.gov/nuccore/FYMZ00000000.1 2011-09-06 GCA_900190435.1 haploid ERS023189 87.08 0.62 61 2017-06-28T08:06:08 GCA_053203845.1 829527 42 6472_8#15 United Kingdom UoS2298-sc-2011-02-14-1078243; 6472_815 1313 GCF_900190435.1 Generic.1.0 87.08 SRA Sample Description GCF_900190435.1 category_na live 2017-06-22 UoS2298 PRJEB2417 GCF_900190435.1-RS_2025_09_04 SC 61 1078243 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYMZ01 2008-02-08 UoS2298 Prokka current 61 ERS023189 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYMZ01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-28 UoS2298 species_match 98.75 SAMEA1026316 10 Streptococcus pneumoniae 91.0 Streptococcus pneumoniae 1313 PRJEB2417 10 current na Best-placed reference protein set; GeneMarkS-2+ 63580 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 19F 19F species Homo sapiens 1940 Streptococcus pneumoniae ERS023189 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-02-08 v1.2.4 2011-09-13T21:54:55.876 97.12 2099815 91.0 1313 2167 2017-06-24T15:36:02.000 2099815 63580 2099814 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 182 EBI 100 GCA_053203845.1 GCF_900190435.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900190435.1 type Nasophaynx 98.75 OK 39.5 Streptococcus pneumoniae 3.62333 https://www.ncbi.nlm.nih.gov/nuccore/FYMZ00000000.1 2011-09-06 GCF_900190435.1 haploid ERS023189 87.08 0.62 61 2017-06-28T08:06:08 GCA_053203845.1 829527 45 6472_8#15 United Kingdom UoS2298-sc-2011-02-14-1078243; 6472_815 1313 GCA_900190435.1 Generic.1.0 87.08 SRA Sample Description GCA_900190435.1 category_na live 2017-06-22 UoS2298 PRJEB2417 Annotation submitted by SC SC 61 1078243 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYMZ01 2008-02-08 UoS2298 6.10 Prokka current 61 ERS023189 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYMZ01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-28 UoS2298 species_match 98.75 SAMEA1025414 7 Streptococcus pneumoniae 90.96 Streptococcus pneumoniae 1313 PRJEB2395 7 current na 63179 type Streptococcus pneumoniae 2015-07-18 22A 22A species Homo sapiens 2075 Streptococcus pneumoniae Streptococcus pneumoniae ERS020746 SC 2009-02-16 v1.2.4 2012-01-20T19:56:06.113 98.63 2104254 90.96 1313 2114 2024-02-06T09:03:54.000 2104303 63179 2104206 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001173425.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CRFY00000000.1 2011-11-15T17:01:01Z GCA_001173425.1 haploid public SMRU1236-sc-2011-01-27-1061449 87.23 1.77 73 2015-07-28T08:11:32 GCA_053203845.1 833578 39 6736_5#12 SMRU1236-sc-2011-01-27-1061449 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025414 1313 GCF_001173425.1 Generic.1.0 87.23 SRA GCF_001173425.1 category_na live 2018-03-09T12:04:15Z SMRU1236 PRJEB2395 GCF_001173425.1-RS_2026_01_25 SC SC 71 2018-03-09T12:04:15Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRFY01 2009-02-16 SMRU1236 2011-11-15T17:01:01Z Prokka current 71 SMRU1236-sc-2011-01-27-1061449 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRFY01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1236 species_match 98.73 SAMEA1025414 7 Streptococcus pneumoniae 90.96 Streptococcus pneumoniae 1313 PRJEB2395 7 current na Best-placed reference protein set; GeneMarkS-2+ 63179 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 22A 22A species Homo sapiens 1992 Streptococcus pneumoniae Streptococcus pneumoniae ERS020746 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-02-16 v1.2.4 2012-01-20T19:56:06.113 98.63 2104254 90.96 1313 2215 2024-02-06T09:03:54.000 2104303 63179 2104206 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 181 EBI 100 GCA_053203845.1 GCF_001173425.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001173425.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CRFY00000000.1 2011-11-15T17:01:01Z GCF_001173425.1 haploid public SMRU1236-sc-2011-01-27-1061449 87.23 1.77 73 2015-07-28T08:11:32 GCA_053203845.1 833578 42 6736_5#12 SMRU1236-sc-2011-01-27-1061449 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025414 1313 GCA_001173425.1 Generic.1.0 87.23 SRA GCA_001173425.1 category_na live 2018-03-09T12:04:15Z SMRU1236 PRJEB2395 Annotation submitted by SC SC SC 71 2018-03-09T12:04:15Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRFY01 2009-02-16 SMRU1236 6.10 2011-11-15T17:01:01Z Prokka current 71 SMRU1236-sc-2011-01-27-1061449 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRFY01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1236 species_match 98.73 SAMEA1029160 11 Streptococcus pneumoniae 88.78 Streptococcus pneumoniae 1313 PRJEB2479 11 current na 62838 type Streptococcus pneumoniae 2015-07-14 19F 19F species Homo sapiens 2058 Streptococcus pneumoniae Streptococcus pneumoniae ERS021879 SC 2009-12-10 v1.2.4 2012-01-20T20:09:21.466 99.31 2093011 88.78 1313 2099 2024-02-05T16:15:39.000 2093033 62838 2093005 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001147905.1 type nasopharynx 98.65 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLYU00000000.1 2012-01-10T09:59:58Z GCA_001147905.1 haploid public SMRU2370-sc-2011-01-27-1062583 88.03 0.44 65 2015-07-28T08:12:48 GCA_001457635.1 830661 41 6983_7#66 SMRU2370-sc-2011-01-27-1062583 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029160 1313 GCF_001147905.1 Generic.1.0 88.03 SRA GCF_001147905.1 category_na live 2018-03-09T09:52:53Z SMRU2370 PRJEB2479 GCF_001147905.1-RS_2026_01_07 SC SC 63 2018-03-09T09:52:53Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLYU01 2009-12-10 SMRU2370 2012-01-10T09:59:58Z Prokka current 63 SMRU2370-sc-2011-01-27-1062583 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLYU01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2370 species_match 98.65 SAMEA1029160 11 Streptococcus pneumoniae 88.78 Streptococcus pneumoniae 1313 PRJEB2479 11 current na Best-placed reference protein set; GeneMarkS-2+ 62838 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-07 19F 19F species Homo sapiens 1991 Streptococcus pneumoniae Streptococcus pneumoniae ERS021879 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-12-10 v1.2.4 2012-01-20T20:09:21.466 99.31 2093011 88.78 1313 2183 2024-02-05T16:15:39.000 2093033 62838 2093005 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 149 EBI 100 GCA_001457635.1 GCF_001147905.1-RS_2026_01_07 SLX Streptococcus pneumoniae GCF_001147905.1 type nasopharynx 98.65 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLYU00000000.1 2012-01-10T09:59:58Z GCF_001147905.1 haploid public SMRU2370-sc-2011-01-27-1062583 88.03 0.44 65 2015-07-28T08:12:48 GCA_001457635.1 830661 43 6983_7#66 SMRU2370-sc-2011-01-27-1062583 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029160 1313 GCA_001147905.1 Generic.1.0 88.03 SRA GCA_001147905.1 category_na live 2018-03-09T09:52:53Z SMRU2370 PRJEB2479 Annotation submitted by SC SC SC 63 2018-03-09T09:52:53Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLYU01 2009-12-10 SMRU2370 6.10 2012-01-10T09:59:58Z Prokka current 63 SMRU2370-sc-2011-01-27-1062583 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLYU01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2370 species_match 98.65 SAMEA1025122 12 Streptococcus pneumoniae 90.21 Streptococcus pneumoniae 1313 PRJEB2395 12 current na 61524 type Streptococcus pneumoniae 2015-07-18 22A 22A species Homo sapiens 2060 Streptococcus pneumoniae Streptococcus pneumoniae ERS020810 SC 2009-02-27 v1.2.4 2012-01-20T19:56:47.853 98.65 2099847 90.21 1313 2102 2024-02-06T09:03:56.000 2099857 61524 2099819 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001203815.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 24.3902 https://www.ncbi.nlm.nih.gov/nuccore/CRIE00000000.1 2011-11-15T09:28:17Z GCA_001203815.1 haploid public SMRU1300-sc-2011-01-27-1061513 89.74 1.92 66 2015-07-28T08:11:36 GCA_001457635.1 832365 42 6736_8#4 SMRU1300-sc-2011-01-27-1061513 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025122 1313 GCF_001203815.1 Generic.1.0 89.74 SRA GCF_001203815.1 category_na live 2018-03-09T12:04:40Z SMRU1300 PRJEB2395 GCF_001203815.1-RS_2026_01_25 SC SC 65 2018-03-09T12:04:40Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRIE01 2009-02-27 SMRU1300 2011-11-15T09:28:17Z Prokka current 65 SMRU1300-sc-2011-01-27-1061513 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRIE01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1300 species_match 98.7 SAMEA1025122 12 Streptococcus pneumoniae 90.21 Streptococcus pneumoniae 1313 PRJEB2395 12 current na Best-placed reference protein set; GeneMarkS-2+ 61524 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 22A 22A species Homo sapiens 1971 Streptococcus pneumoniae Streptococcus pneumoniae ERS020810 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-02-27 v1.2.4 2012-01-20T19:56:47.853 98.65 2099847 90.21 1313 2196 2024-02-06T09:03:56.000 2099857 61524 2099819 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 180 EBI 100 GCA_001457635.1 GCF_001203815.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001203815.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 24.3902 https://www.ncbi.nlm.nih.gov/nuccore/CRIE00000000.1 2011-11-15T09:28:17Z GCF_001203815.1 haploid public SMRU1300-sc-2011-01-27-1061513 89.74 1.92 66 2015-07-28T08:11:36 GCA_001457635.1 832365 45 6736_8#4 SMRU1300-sc-2011-01-27-1061513 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025122 1313 GCA_001203815.1 Generic.1.0 89.74 SRA GCA_001203815.1 category_na live 2018-03-09T12:04:40Z SMRU1300 PRJEB2395 Annotation submitted by SC SC SC 65 2018-03-09T12:04:40Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRIE01 2009-02-27 SMRU1300 6.10 2011-11-15T09:28:17Z Prokka current 65 SMRU1300-sc-2011-01-27-1061513 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRIE01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1300 species_match 98.7 SAMEA1026155 11 Streptococcus pneumoniae 92.02 Streptococcus pneumoniae 1313 PRJEB2397 12 current na 62849 type Streptococcus pneumoniae 2015-07-28 19F 19F species Homo sapiens 2015 Streptococcus pneumoniae Streptococcus pneumoniae ERS021326 SC 2009-08-14 v1.2.4 2012-01-20T20:02:33.633 99.31 2050911 92.02 1313 2056 2024-02-06T09:04:24.000 2050932 59985 2050904 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001344775.1 type nasopharynx 98.52 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CHUW00000000.1 2011-12-13T09:59:02Z GCA_001344775.1 haploid public SMRU1816-sc-2011-01-27-1062029 86.01 0.31 57 2015-07-28T08:12:19 GCA_053203845.1 813726 41 6840_3#16 SMRU1816-sc-2011-01-27-1062029 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026155 1313 GCF_001344775.1 Generic.1.0 86.01 SRA GCF_001344775.1 category_na live 2018-03-09T12:13:32Z SMRU1816 PRJEB2397 GCF_001344775.1-RS_2026_01_13 SC SC 55 2018-03-09T12:13:32Z 2011-12-13T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHUW01 2009-08-14 SMRU1816 2011-12-13T09:59:02Z Prokka current 55 SMRU1816-sc-2011-01-27-1062029 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHUW01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU1816 species_match 98.52 SAMEA1026155 11 Streptococcus pneumoniae 92.02 Streptococcus pneumoniae 1313 PRJEB2397 12 current na Best-placed reference protein set; GeneMarkS-2+ 62849 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-13 19F 19F species Homo sapiens 1934 Streptococcus pneumoniae Streptococcus pneumoniae ERS021326 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-08-14 v1.2.4 2012-01-20T20:02:33.633 99.31 2050911 92.02 1313 2137 2024-02-06T09:04:24.000 2050932 59985 2050904 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 158 EBI 100 GCA_053203845.1 GCF_001344775.1-RS_2026_01_13 SLX Streptococcus pneumoniae GCF_001344775.1 type nasopharynx 98.52 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CHUW00000000.1 2011-12-13T09:59:02Z GCF_001344775.1 haploid public SMRU1816-sc-2011-01-27-1062029 86.01 0.31 57 2015-07-28T08:12:19 GCA_053203845.1 813726 45 6840_3#16 SMRU1816-sc-2011-01-27-1062029 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026155 1313 GCA_001344775.1 Generic.1.0 86.01 SRA GCA_001344775.1 category_na live 2018-03-09T12:13:32Z SMRU1816 PRJEB2397 Annotation submitted by SC SC SC 55 2018-03-09T12:13:32Z 2011-12-13T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHUW01 2009-08-14 SMRU1816 6.10 2011-12-13T09:59:02Z Prokka current 55 SMRU1816-sc-2011-01-27-1062029 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHUW01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU1816 species_match 98.52 SAMEA1025211 11 Streptococcus pneumoniae 92.06 Streptococcus pneumoniae 1313 PRJEB2395 11 current na 59546 type Streptococcus pneumoniae 2015-07-17 22A 22A species Homo sapiens 1976 Streptococcus pneumoniae Streptococcus pneumoniae ERS020971 SC 2009-04-23 v1.2.4 2012-01-20T19:58:35.080 99.06 2048034 92.06 1313 2015 2024-02-06T09:03:58.000 2048074 59546 2048016 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001135705.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CRSU00000000.1 2011-11-29T12:03:47Z GCA_001135705.1 haploid public SMRU1461-sc-2011-01-27-1061674 89.32 0.94 78 2015-07-28T08:11:53 GCA_001457635.1 811232 39 6805_3#21 SMRU1461-sc-2011-01-27-1061674 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025211 1313 GCF_001135705.1 Generic.1.0 89.32 SRA GCF_001135705.1 category_na live 2018-03-09T12:05:15Z SMRU1461 PRJEB2395 GCF_001135705.1-RS_2026_01_22 SC SC 76 2018-03-09T12:05:15Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRSU01 2009-04-23 SMRU1461 2011-11-29T12:03:47Z Prokka current 76 SMRU1461-sc-2011-01-27-1061674 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRSU01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1461 species_match 98.71 SAMEA1025211 11 Streptococcus pneumoniae 92.06 Streptococcus pneumoniae 1313 PRJEB2395 11 current na Best-placed reference protein set; GeneMarkS-2+ 59546 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 22A 22A species Homo sapiens 1908 Streptococcus pneumoniae Streptococcus pneumoniae ERS020971 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-23 v1.2.4 2012-01-20T19:58:35.080 99.06 2048034 92.06 1313 2121 2024-02-06T09:03:58.000 2048074 59546 2048016 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 171 EBI 100 GCA_001457635.1 GCF_001135705.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_001135705.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CRSU00000000.1 2011-11-29T12:03:47Z GCF_001135705.1 haploid public SMRU1461-sc-2011-01-27-1061674 89.32 0.94 78 2015-07-28T08:11:53 GCA_001457635.1 811232 42 6805_3#21 SMRU1461-sc-2011-01-27-1061674 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025211 1313 GCA_001135705.1 Generic.1.0 89.32 SRA GCA_001135705.1 category_na live 2018-03-09T12:05:15Z SMRU1461 PRJEB2395 Annotation submitted by SC SC SC 76 2018-03-09T12:05:15Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRSU01 2009-04-23 SMRU1461 6.10 2011-11-29T12:03:47Z Prokka current 76 SMRU1461-sc-2011-01-27-1061674 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRSU01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1461 species_match 98.71 SAMEA1025252 10 Streptococcus pneumoniae 90.96 Streptococcus pneumoniae 1313 PRJEB2395 12 current na 72806 type Streptococcus pneumoniae 2015-07-18 22A 22A species Homo sapiens 2000 Streptococcus pneumoniae Streptococcus pneumoniae ERS020703 SC 2009-01-26 v1.2.4 2012-01-20T19:55:36.333 99.06 2079163 90.96 1313 2039 2024-02-06T09:03:52.000 2079238 59426 2079128 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001146285.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CROV00000000.1 2011-11-15T09:28:18Z GCA_001146285.1 haploid public SMRU1193-sc-2011-01-27-1061406 86.18 3.14 63 2015-07-28T08:11:30 GCA_053203845.1 823940 39 6755_6#16 SMRU1193-sc-2011-01-27-1061406 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025252 1313 GCF_001146285.1 Generic.1.0 86.18 SRA GCF_001146285.1 category_na live 2018-03-09T12:03:48Z SMRU1193 PRJEB2395 GCF_001146285.1-RS_2026_01_24 SC SC 59 2018-03-09T12:03:48Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CROV01 2009-01-26 SMRU1193 2011-11-15T09:28:18Z Prokka current 59 SMRU1193-sc-2011-01-27-1061406 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CROV01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1193 species_match 98.75 SAMEA1025252 10 Streptococcus pneumoniae 90.96 Streptococcus pneumoniae 1313 PRJEB2395 12 current na Best-placed reference protein set; GeneMarkS-2+ 72806 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 22A 22A species Homo sapiens 1926 Streptococcus pneumoniae Streptococcus pneumoniae ERS020703 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-01-26 v1.2.4 2012-01-20T19:55:36.333 99.06 2079163 90.96 1313 2146 2024-02-06T09:03:52.000 2079238 59426 2079128 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 178 EBI 100 GCA_053203845.1 GCF_001146285.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_001146285.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CROV00000000.1 2011-11-15T09:28:18Z GCF_001146285.1 haploid public SMRU1193-sc-2011-01-27-1061406 86.18 3.14 63 2015-07-28T08:11:30 GCA_053203845.1 823940 42 6755_6#16 SMRU1193-sc-2011-01-27-1061406 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025252 1313 GCA_001146285.1 Generic.1.0 86.18 SRA GCA_001146285.1 category_na live 2018-03-09T12:03:48Z SMRU1193 PRJEB2395 Annotation submitted by SC SC SC 59 2018-03-09T12:03:48Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CROV01 2009-01-26 SMRU1193 6.10 2011-11-15T09:28:18Z Prokka current 59 SMRU1193-sc-2011-01-27-1061406 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CROV01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1193 species_match 98.75 SAMEA2238621 5 Streptococcus pneumoniae 92.42 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 117013 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2079 Streptococcus pneumoniae Streptococcus pneumoniae ERS367433 SC 2006/2012 v1.2.4 2014-05-07T08:34:44.736 99.09 2081467 92.42 1313 2125 2024-02-06T05:20:18.000 2083686 98026 2081466 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900025125.1 type CSF 98.93 ERC000011 OK 39.5 Streptococcus pneumoniae 55.0989 https://www.ncbi.nlm.nih.gov/nuccore/FEDE00000000.1 2014-03-18T09:35:29Z GCA_900025125.1 haploid public 2090297-sc-2013-11-05T11:59:37Z-1749982 87.67 0.69 47 2015-08-10T19:24:20 GCA_053203845.1 824559 46 11861_1#59 2090297-sc-2013-11-05T11:59:37Z-1749982 Netherlands 11861_1#59 SAMEA2238621 1313 GCF_900025125.1 Generic.1.0 87.67 SRA GCF_900025125.1 category_na live 2018-03-09T10:29:30Z 2842STDY5643993 PRJEB4909 GCF_900025125.1-RS_2026_01_25 SC SC 39 1749982 2018-03-09T10:29:30Z 2014-03-18T00:00:00.000 2090297 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEDE01 2006/2012 2842STDY5643993 2014-03-18T09:35:29Z Prokka current 39 2090297-sc-2013-11-05T11:59:37Z-1749982 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEDE01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643993 species_match 98.93 SAMEA2238621 5 Streptococcus pneumoniae 92.42 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 117013 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1972 Streptococcus pneumoniae Streptococcus pneumoniae ERS367433 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:44.736 99.09 2081467 92.42 1313 2192 2024-02-06T05:20:18.000 2083686 98026 2081466 CSF Homo sapiens Streptococcus pneumoniae Disease 166 EBI 100 GCA_053203845.1 GCF_900025125.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900025125.1 type CSF 98.93 ERC000011 OK 39.5 Streptococcus pneumoniae 55.0989 https://www.ncbi.nlm.nih.gov/nuccore/FEDE00000000.1 2014-03-18T09:35:29Z GCF_900025125.1 haploid public 2090297-sc-2013-11-05T11:59:37Z-1749982 87.67 0.69 47 2015-08-10T19:24:20 GCA_053203845.1 824559 54 11861_1#59 2090297-sc-2013-11-05T11:59:37Z-1749982 Netherlands 11861_1#59 SAMEA2238621 1313 GCA_900025125.1 Generic.1.0 87.67 SRA GCA_900025125.1 category_na live 2018-03-09T10:29:30Z 2842STDY5643993 PRJEB4909 Annotation submitted by SC SC SC 39 1749982 2018-03-09T10:29:30Z 2014-03-18T00:00:00.000 2090297 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEDE01 2006/2012 2842STDY5643993 6.10 2014-03-18T09:35:29Z Prokka current 39 2090297-sc-2013-11-05T11:59:37Z-1749982 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEDE01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643993 species_match 98.93 SAMEA2238852 6 Streptococcus pneumoniae 94.33 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 119749 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2064 Streptococcus pneumoniae Streptococcus pneumoniae ERS367664 SC 2006/2012 v1.2.4 2014-05-07T08:35:01.670 99.23 2067738 94.33 1313 2107 2024-02-06T05:28:11.000 2070901 86135 2067736 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900028785.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 71.8008 https://www.ncbi.nlm.nih.gov/nuccore/FCUU00000000.1 2014-05-06T09:15:19Z GCA_900028785.1 haploid public 2104348-sc-2013-11-05T12:03:29Z-1750216 88.88 0.62 45 2015-08-10T19:24:28 GCA_053203845.1 818435 43 12216_4#92 2104348-sc-2013-11-05T12:03:29Z-1750216 Netherlands 12216_4#92 SAMEA2238852 1313 GCF_900028785.1 Generic.1.0 88.88 SRA GCF_900028785.1 category_na live 2018-03-09T10:30:30Z 2842STDY5644227 PRJEB4909 GCF_900028785.1-RS_2026_01_11 SC SC 33 1750216 2018-03-09T10:30:30Z 2014-05-06T00:00:00.000 2104348 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUU01 2006/2012 2842STDY5644227 2014-05-06T09:15:19Z Prokka current 33 2104348-sc-2013-11-05T12:03:29Z-1750216 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUU01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644227 species_match 98.84 SAMEA2238852 6 Streptococcus pneumoniae 94.33 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 119749 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1964 Streptococcus pneumoniae Streptococcus pneumoniae ERS367664 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:01.670 99.23 2067738 94.33 1313 2185 2024-02-06T05:28:11.000 2070901 86135 2067736 CSF Homo sapiens Streptococcus pneumoniae Disease 170 EBI 100 GCA_053203845.1 GCF_900028785.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900028785.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 71.8008 https://www.ncbi.nlm.nih.gov/nuccore/FCUU00000000.1 2014-05-06T09:15:19Z GCF_900028785.1 haploid public 2104348-sc-2013-11-05T12:03:29Z-1750216 88.88 0.62 45 2015-08-10T19:24:28 GCA_053203845.1 818435 51 12216_4#92 2104348-sc-2013-11-05T12:03:29Z-1750216 Netherlands 12216_4#92 SAMEA2238852 1313 GCA_900028785.1 Generic.1.0 88.88 SRA GCA_900028785.1 category_na live 2018-03-09T10:30:30Z 2842STDY5644227 PRJEB4909 Annotation submitted by SC SC SC 33 1750216 2018-03-09T10:30:30Z 2014-05-06T00:00:00.000 2104348 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUU01 2006/2012 2842STDY5644227 6.10 2014-05-06T09:15:19Z Prokka current 33 2104348-sc-2013-11-05T12:03:29Z-1750216 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUU01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644227 species_match 98.84 SAMEA2796497 8 Streptococcus pneumoniae 94.01 Streptococcus pneumoniae 1313 PRJEB3084 10 current na 102323 type Streptococcus pneumoniae 2019-05-15 22F 22F species Homo sapiens 2039 Streptococcus pneumoniae Streptococcus pneumoniae ERS558108 SC 2008 v1.2.4 2015-01-30T08:09:10.903 99.36 2057935 94.01 1313 2086 Streptococcus pneumoniae 2024-02-06T15:55:21.000 2059731 84400 2057935 blood Homo sapiens Streptococcus pneumoniae Pneumonia ST4553 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900055235.2 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 90.3527 https://www.ncbi.nlm.nih.gov/nuccore/FHUM00000000.2 2015-01-27T09:20:52Z GCA_900055235.2 haploid public GPS_US_2009202419-sc-2138476 88.17 0.62 44 2018-03-10T19:32:55 GCA_053203845.1 813112 47 14673_1#89 GPS_US_2009202419-sc-2138476 USA 14673_1#89 SAMEA2796497 1313 GCF_900055235.2 Generic.1.0 88.17 SRA GCF_900055235.2 category_na live 2019-04-18T15:39:27Z GPSC19 PRJEB3084 GCF_900055235.2-RS_2026_01_19 SC SC 35 2138476 2019-04-18T15:39:27Z 2015-01-27T00:00:00.000 2009202419 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHUM02 2008 2245STDY5982518 2015-01-27T09:20:52Z Prokka current 35 GPS_US_2009202419-sc-2138476 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHUM02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-15 GPSC19 species_match 98.86 SAMEA2796497 8 Streptococcus pneumoniae 94.01 Streptococcus pneumoniae 1313 PRJEB3084 10 current na Best-placed reference protein set; GeneMarkS-2+ 102323 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 22F 22F species Homo sapiens 1942 Streptococcus pneumoniae Streptococcus pneumoniae ERS558108 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008 v1.2.4 2015-01-30T08:09:10.903 99.36 2057935 94.01 1313 2162 Streptococcus pneumoniae 2024-02-06T15:55:21.000 2059731 84400 2057935 blood Homo sapiens Streptococcus pneumoniae Pneumonia 166 ST4553 EBI 100 GCA_053203845.1 GCF_900055235.2-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_900055235.2 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 90.3527 https://www.ncbi.nlm.nih.gov/nuccore/FHUM00000000.2 2015-01-27T09:20:52Z GCF_900055235.2 haploid public GPS_US_2009202419-sc-2138476 88.17 0.62 44 2018-03-10T19:32:55 GCA_053203845.1 813112 54 14673_1#89 GPS_US_2009202419-sc-2138476 USA 14673_1#89 SAMEA2796497 1313 GCA_900055235.2 Generic.1.0 88.17 SRA GCA_900055235.2 category_na live 2019-04-18T15:39:27Z GPSC19 PRJEB3084 Annotation submitted by SC SC SC 35 2138476 2019-04-18T15:39:27Z 2015-01-27T00:00:00.000 2009202419 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHUM02 2008 GPSC19 substr. ST4553 6.10 2015-01-27T09:20:52Z Prokka current 35 GPS_US_2009202419-sc-2138476 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHUM02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-15 GPSC19 species_match 98.86 SAMEA2239179 6 Streptococcus pneumoniae 94.95 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 132866 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2045 Streptococcus pneumoniae Streptococcus pneumoniae ERS367991 SC 2006/2012 v1.2.4 2014-05-07T08:35:25.646 99.27 2051582 94.95 1313 2091 2024-02-06T05:04:45.000 2053026 84324 2051582 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900019995.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 77.6327 https://www.ncbi.nlm.nih.gov/nuccore/FDRT00000000.1 2014-03-18T09:35:29Z GCA_900019995.1 haploid public 2001580-sc-2013-11-05T12:09:17Z-1750550 88.77 0.31 48 2015-08-10T19:24:46 GCA_053203845.1 813718 46 11860_8#47 2001580-sc-2013-11-05T12:09:17Z-1750550 Netherlands 11860_8#47 SAMEA2239179 1313 GCF_900019995.1 Generic.1.0 88.77 SRA GCF_900019995.1 category_na live 2018-03-09T10:27:43Z 2842STDY5644561 PRJEB4909 GCF_900019995.1-RS_2025_09_28 SC SC 42 1750550 2018-03-09T10:27:43Z 2014-03-18T00:00:00.000 2001580 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRT01 2006/2012 2842STDY5644561 2014-03-18T09:35:29Z Prokka current 42 2001580-sc-2013-11-05T12:09:17Z-1750550 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRT01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644561 species_match 98.83 SAMEA2239179 6 Streptococcus pneumoniae 94.95 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 132866 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1943 Streptococcus pneumoniae Streptococcus pneumoniae ERS367991 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:25.646 99.27 2051582 94.95 1313 2158 2024-02-06T05:04:45.000 2053026 84324 2051582 CSF Homo sapiens Streptococcus pneumoniae Disease 162 EBI 100 GCA_053203845.1 GCF_900019995.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900019995.1 type CSF 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 77.6327 https://www.ncbi.nlm.nih.gov/nuccore/FDRT00000000.1 2014-03-18T09:35:29Z GCF_900019995.1 haploid public 2001580-sc-2013-11-05T12:09:17Z-1750550 88.77 0.31 48 2015-08-10T19:24:46 GCA_053203845.1 813718 53 11860_8#47 2001580-sc-2013-11-05T12:09:17Z-1750550 Netherlands 11860_8#47 SAMEA2239179 1313 GCA_900019995.1 Generic.1.0 88.77 SRA GCA_900019995.1 category_na live 2018-03-09T10:27:43Z 2842STDY5644561 PRJEB4909 Annotation submitted by SC SC SC 42 1750550 2018-03-09T10:27:43Z 2014-03-18T00:00:00.000 2001580 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRT01 2006/2012 2842STDY5644561 6.10 2014-03-18T09:35:29Z Prokka current 42 2001580-sc-2013-11-05T12:09:17Z-1750550 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRT01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644561 species_match 98.83 SAMEA2383092 8 Streptococcus pneumoniae 92.82 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 84320 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2053 Streptococcus pneumoniae Streptococcus pneumoniae ERS409417 SC 2006/2012 v1.2.4 2014-07-17T08:09:32.280 99.09 2065164 92.82 1313 2098 2024-02-06T06:52:44.000 2066262 84320 2065163 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900028615.1 type blood 98.95 ERC000011 OK 39.5 Streptococcus pneumoniae 55.0989 https://www.ncbi.nlm.nih.gov/nuccore/FEHK00000000.1 2014-07-16T11:40:11Z GCA_900028615.1 haploid public 2100047_II-sc-1870342 87.36 0.69 55 2018-03-10T19:06:26 GCA_053203845.1 818670 45 12754_2#72 2100047_II-sc-1870342 Netherlands 12754_2#72 SAMEA2383092 1313 GCF_900028615.1 Generic.1.0 87.36 SRA GCF_900028615.1 category_na live 2018-03-09T10:42:36Z 2842STDY5753637 PRJEB4909 GCF_900028615.1-RS_2026_01_25 SC SC 51 1870342 2018-03-09T10:42:36Z 2014-07-16T00:00:00.000 2100047_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEHK01 2006/2012 2842STDY5753637 2014-07-16T11:40:11Z Prokka current 51 2100047_II-sc-1870342 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEHK01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753637 species_match 98.95 SAMEA2383092 8 Streptococcus pneumoniae 92.82 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 84320 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1958 Streptococcus pneumoniae Streptococcus pneumoniae ERS409417 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:32.280 99.09 2065164 92.82 1313 2177 2024-02-06T06:52:44.000 2066262 84320 2065163 blood Homo sapiens Streptococcus pneumoniae Disease 167 EBI 100 GCA_053203845.1 GCF_900028615.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900028615.1 type blood 98.95 ERC000011 OK 39.5 Streptococcus pneumoniae 55.0989 https://www.ncbi.nlm.nih.gov/nuccore/FEHK00000000.1 2014-07-16T11:40:11Z GCF_900028615.1 haploid public 2100047_II-sc-1870342 87.36 0.69 55 2018-03-10T19:06:26 GCA_053203845.1 818670 52 12754_2#72 2100047_II-sc-1870342 Netherlands 12754_2#72 SAMEA2383092 1313 GCA_900028615.1 Generic.1.0 87.36 SRA GCA_900028615.1 category_na live 2018-03-09T10:42:36Z 2842STDY5753637 PRJEB4909 Annotation submitted by SC SC SC 51 1870342 2018-03-09T10:42:36Z 2014-07-16T00:00:00.000 2100047_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEHK01 2006/2012 2842STDY5753637 6.10 2014-07-16T11:40:11Z Prokka current 51 2100047_II-sc-1870342 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEHK01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753637 species_match 98.95 SAMEA2238787 6 Streptococcus pneumoniae 94.06 Streptococcus pneumoniae 1313 PRJEB4909 9 current na 104411 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2035 Streptococcus pneumoniae Streptococcus pneumoniae ERS367599 SC 2006/2012 v1.2.4 2014-05-07T08:34:57.650 99.36 2057906 94.06 1313 2081 2024-02-06T05:03:43.000 2059923 81766 2057905 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900020745.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 90.3527 https://www.ncbi.nlm.nih.gov/nuccore/FCTH00000000.1 2014-03-18T09:35:30Z GCA_900020745.1 haploid public 2102535-sc-2013-11-05T12:02:26Z-1750150 88.21 0.62 44 2018-03-10T18:56:43 GCA_053203845.1 813150 46 11893_1#30 2102535-sc-2013-11-05T12:02:26Z-1750150 Netherlands 11893_1#30 SAMEA2238787 1313 GCF_900020745.1 Generic.1.0 88.21 SRA GCF_900020745.1 category_na live 2018-03-09T10:27:43Z 2842STDY5644161 PRJEB4909 GCF_900020745.1-RS_2026_01_11 SC SC 34 1750150 2018-03-09T10:27:43Z 2014-03-18T00:00:00.000 2102535 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCTH01 2006/2012 2842STDY5644161 2014-03-18T09:35:30Z Prokka current 34 2102535-sc-2013-11-05T12:02:26Z-1750150 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCTH01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644161 species_match 98.85 SAMEA2238787 6 Streptococcus pneumoniae 94.06 Streptococcus pneumoniae 1313 PRJEB4909 9 current na Best-placed reference protein set; GeneMarkS-2+ 104411 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1938 Streptococcus pneumoniae Streptococcus pneumoniae ERS367599 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:57.650 99.36 2057906 94.06 1313 2150 2024-02-06T05:03:43.000 2059923 81766 2057905 CSF Homo sapiens Streptococcus pneumoniae Disease 160 EBI 100 GCA_053203845.1 GCF_900020745.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900020745.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 90.3527 https://www.ncbi.nlm.nih.gov/nuccore/FCTH00000000.1 2014-03-18T09:35:30Z GCF_900020745.1 haploid public 2102535-sc-2013-11-05T12:02:26Z-1750150 88.21 0.62 44 2018-03-10T18:56:43 GCA_053203845.1 813150 52 11893_1#30 2102535-sc-2013-11-05T12:02:26Z-1750150 Netherlands 11893_1#30 SAMEA2238787 1313 GCA_900020745.1 Generic.1.0 88.21 SRA GCA_900020745.1 category_na live 2018-03-09T10:27:43Z 2842STDY5644161 PRJEB4909 Annotation submitted by SC SC SC 34 1750150 2018-03-09T10:27:43Z 2014-03-18T00:00:00.000 2102535 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCTH01 2006/2012 2842STDY5644161 6.10 2014-03-18T09:35:30Z Prokka current 34 2102535-sc-2013-11-05T12:02:26Z-1750150 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCTH01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644161 species_match 98.85 SAMEA2521632 7 Streptococcus pneumoniae 94.6 Streptococcus pneumoniae 1313 PRJEB3084 8 current na 102395 type Streptococcus pneumoniae 2019-05-12 22F 22F species Homo sapiens 1994 Streptococcus pneumoniae Streptococcus pneumoniae ERS455172 SC 2012 v1.2.4 2014-09-17T09:08:15.393 99.34 2026999 94.6 1313 2039 Streptococcus pneumoniae 2024-02-06T15:55:09.000 2029186 81503 2026998 PLEURAL FLUID Homo sapiens Streptococcus pneumoniae Disease ST433 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900049885.2 type PLEURAL FLUID 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 89.783 https://www.ncbi.nlm.nih.gov/nuccore/FHSN00000000.2 2014-09-16T09:22:31Z GCA_900049885.2 haploid public 2012211517-sc-1946924 87.38 0.62 39 2015-08-10T19:57:10 GCA_053203845.1 802078 45 13414_2#81 2012211517-sc-1946924 USA 13414_2#81 SAMEA2521632 1313 GCF_900049885.2 Generic.1.0 87.38 SRA GCF_900049885.2 category_na live 2019-04-18T15:39:23Z GPSC19 PRJEB3084 GCF_900049885.2-RS_2025_12_30 SC SC 31 1946924 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012211517 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSN02 2012 2245STDY5819598 2014-09-16T09:22:31Z Prokka current 31 2012211517-sc-1946924 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSN02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC19 species_match 98.87 SAMEA2521632 7 Streptococcus pneumoniae 94.6 Streptococcus pneumoniae 1313 PRJEB3084 8 current na Best-placed reference protein set; GeneMarkS-2+ 102395 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-30 22F 22F species Homo sapiens 1895 Streptococcus pneumoniae Streptococcus pneumoniae ERS455172 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:15.393 99.34 2026999 94.6 1313 2115 Streptococcus pneumoniae 2024-02-06T15:55:09.000 2029186 81503 2026998 PLEURAL FLUID Homo sapiens Streptococcus pneumoniae Disease 169 ST433 EBI 100 GCA_053203845.1 GCF_900049885.2-RS_2025_12_30 SLX Streptococcus pneumoniae GCF_900049885.2 type PLEURAL FLUID 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 89.783 https://www.ncbi.nlm.nih.gov/nuccore/FHSN00000000.2 2014-09-16T09:22:31Z GCF_900049885.2 haploid public 2012211517-sc-1946924 87.38 0.62 39 2015-08-10T19:57:10 GCA_053203845.1 802078 51 13414_2#81 2012211517-sc-1946924 USA 13414_2#81 SAMEA2521632 1313 GCA_900049885.2 Generic.1.0 87.38 SRA GCA_900049885.2 category_na live 2019-04-18T15:39:23Z GPSC19 PRJEB3084 Annotation submitted by SC SC SC 31 1946924 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012211517 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSN02 2012 GPSC19 substr. ST433 6.10 2014-09-16T09:22:31Z Prokka current 31 2012211517-sc-1946924 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSN02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC19 species_match 98.87 SAMEA2238827 5 Streptococcus pneumoniae 94.07 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 97882 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2036 Streptococcus pneumoniae Streptococcus pneumoniae ERS367639 SC 2006/2012 v1.2.4 2014-05-07T08:34:59.903 99.05 2057873 94.07 1313 2082 2024-02-06T05:05:37.000 2058503 80407 2057866 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900030525.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 51.1363 https://www.ncbi.nlm.nih.gov/nuccore/FCUC00000000.1 2014-03-18T09:35:30Z GCA_900030525.1 haploid public 2103495-sc-2013-11-05T12:03:05Z-1750190 88.21 0.62 42 2015-08-10T19:24:27 GCA_053203845.1 813126 46 11893_1#68 2103495-sc-2013-11-05T12:03:05Z-1750190 Netherlands 11893_1#68 SAMEA2238827 1313 GCF_900030525.1 Generic.1.0 88.21 SRA GCF_900030525.1 category_na live 2018-03-09T10:27:52Z 2842STDY5644201 PRJEB4909 GCF_900030525.1-RS_2025_12_21 SC SC 38 1750190 2018-03-09T10:27:52Z 2014-03-18T00:00:00.000 2103495 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUC01 2006/2012 2842STDY5644201 2014-03-18T09:35:30Z Prokka current 38 2103495-sc-2013-11-05T12:03:05Z-1750190 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUC01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644201 species_match 98.85 SAMEA2238827 5 Streptococcus pneumoniae 94.07 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 97882 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-21 species Homo sapiens 1945 Streptococcus pneumoniae Streptococcus pneumoniae ERS367639 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:59.903 99.05 2057873 94.07 1313 2158 2024-02-06T05:05:37.000 2058503 80407 2057866 CSF Homo sapiens Streptococcus pneumoniae Disease 161 EBI 100 GCA_053203845.1 GCF_900030525.1-RS_2025_12_21 SLX Streptococcus pneumoniae GCF_900030525.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 51.1363 https://www.ncbi.nlm.nih.gov/nuccore/FCUC00000000.1 2014-03-18T09:35:30Z GCF_900030525.1 haploid public 2103495-sc-2013-11-05T12:03:05Z-1750190 88.21 0.62 42 2015-08-10T19:24:27 GCA_053203845.1 813126 52 11893_1#68 2103495-sc-2013-11-05T12:03:05Z-1750190 Netherlands 11893_1#68 SAMEA2238827 1313 GCA_900030525.1 Generic.1.0 88.21 SRA GCA_900030525.1 category_na live 2018-03-09T10:27:52Z 2842STDY5644201 PRJEB4909 Annotation submitted by SC SC SC 38 1750190 2018-03-09T10:27:52Z 2014-03-18T00:00:00.000 2103495 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUC01 2006/2012 2842STDY5644201 6.10 2014-03-18T09:35:30Z Prokka current 38 2103495-sc-2013-11-05T12:03:05Z-1750190 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUC01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644201 species_match 98.85 SAMEA2238290 6 Streptococcus pneumoniae 94.04 Streptococcus pneumoniae 1313 PRJEB4909 9 current na 85038 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2042 Streptococcus pneumoniae Streptococcus pneumoniae ERS367102 SC 2006/2012 v1.2.4 2014-05-07T08:34:13.163 99.36 2057218 94.04 1313 2088 2024-02-06T05:11:40.000 2059392 79143 2057216 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900034005.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 90.3527 https://www.ncbi.nlm.nih.gov/nuccore/FDVS00000000.1 2014-03-18T09:35:31Z GCA_900034005.1 haploid public 2060837-sc-2013-11-05T11:54:04Z-1749648 88.16 0.62 40 2015-08-10T19:24:06 GCA_053203845.1 812931 46 11860_4#15 2060837-sc-2013-11-05T11:54:04Z-1749648 Netherlands 11860_4#15 SAMEA2238290 1313 GCF_900034005.1 Generic.1.0 88.16 SRA GCF_900034005.1 category_na live 2018-03-09T10:28:31Z 2842STDY5643659 PRJEB4909 GCF_900034005.1-RS_2026_01_25 SC SC 31 1749648 2018-03-09T10:28:31Z 2014-03-18T00:00:00.000 2060837 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDVS01 2006/2012 2842STDY5643659 2014-03-18T09:35:31Z Prokka current 31 2060837-sc-2013-11-05T11:54:04Z-1749648 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDVS01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643659 species_match 98.86 SAMEA2238290 6 Streptococcus pneumoniae 94.04 Streptococcus pneumoniae 1313 PRJEB4909 9 current na Best-placed reference protein set; GeneMarkS-2+ 85038 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1936 Streptococcus pneumoniae Streptococcus pneumoniae ERS367102 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:13.163 99.36 2057218 94.04 1313 2148 2024-02-06T05:11:40.000 2059392 79143 2057216 CSF Homo sapiens Streptococcus pneumoniae Disease 160 EBI 100 GCA_053203845.1 GCF_900034005.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900034005.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 90.3527 https://www.ncbi.nlm.nih.gov/nuccore/FDVS00000000.1 2014-03-18T09:35:31Z GCF_900034005.1 haploid public 2060837-sc-2013-11-05T11:54:04Z-1749648 88.16 0.62 40 2015-08-10T19:24:06 GCA_053203845.1 812931 52 11860_4#15 2060837-sc-2013-11-05T11:54:04Z-1749648 Netherlands 11860_4#15 SAMEA2238290 1313 GCA_900034005.1 Generic.1.0 88.16 SRA GCA_900034005.1 category_na live 2018-03-09T10:28:31Z 2842STDY5643659 PRJEB4909 Annotation submitted by SC SC SC 31 1749648 2018-03-09T10:28:31Z 2014-03-18T00:00:00.000 2060837 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDVS01 2006/2012 2842STDY5643659 6.10 2014-03-18T09:35:31Z Prokka current 31 2060837-sc-2013-11-05T11:54:04Z-1749648 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDVS01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643659 species_match 98.86 SAMEA2796418 8 Streptococcus pneumoniae 93.61 Streptococcus pneumoniae 1313 PRJEB3084 9 current na 78427 type Streptococcus pneumoniae 2019-05-22 22F 22F species Homo sapiens 2095 Streptococcus pneumoniae Streptococcus pneumoniae ERS558029 SC 2008 v1.2.4 2015-01-30T08:09:07.130 99.36 2096014 93.61 1313 2141 Streptococcus pneumoniae 2024-02-06T15:55:18.000 2099205 70012 2096011 blood Homo sapiens Streptococcus pneumoniae Pneumonia ST433 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900052765.2 type blood 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae 90.3527 https://www.ncbi.nlm.nih.gov/nuccore/FHTU00000000.2 2015-01-27T09:20:52Z GCA_900052765.2 haploid public GPS_US_2009206314-sc-2138397 89.41 0.62 52 2015-08-11T22:00:45 GCA_053203845.1 828574 46 14673_1#10 GPS_US_2009206314-sc-2138397 USA 14673_1#10 SAMEA2796418 1313 GCF_900052765.2 Generic.1.0 89.41 SRA GCF_900052765.2 category_na live 2019-04-18T15:39:26Z GPSC19 PRJEB3084 GCF_900052765.2-RS_2026_01_18 SC SC 40 2138397 2019-04-18T15:39:26Z 2015-01-27T00:00:00.000 2009206314 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHTU02 2008 2245STDY5982439 2015-01-27T09:20:52Z Prokka current 40 GPS_US_2009206314-sc-2138397 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHTU02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-22 GPSC19 species_match 98.81 SAMEA2796418 8 Streptococcus pneumoniae 93.61 Streptococcus pneumoniae 1313 PRJEB3084 9 current na Best-placed reference protein set; GeneMarkS-2+ 78427 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 22F 22F species Homo sapiens 1991 Streptococcus pneumoniae Streptococcus pneumoniae ERS558029 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008 v1.2.4 2015-01-30T08:09:07.130 99.36 2096014 93.61 1313 2206 Streptococcus pneumoniae 2024-02-06T15:55:18.000 2099205 70012 2096011 blood Homo sapiens Streptococcus pneumoniae Pneumonia 162 ST433 EBI 100 GCA_053203845.1 GCF_900052765.2-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_900052765.2 type blood 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae 90.3527 https://www.ncbi.nlm.nih.gov/nuccore/FHTU00000000.2 2015-01-27T09:20:52Z GCF_900052765.2 haploid public GPS_US_2009206314-sc-2138397 89.41 0.62 52 2015-08-11T22:00:45 GCA_053203845.1 828574 53 14673_1#10 GPS_US_2009206314-sc-2138397 USA 14673_1#10 SAMEA2796418 1313 GCA_900052765.2 Generic.1.0 89.41 SRA GCA_900052765.2 category_na live 2019-04-18T15:39:26Z GPSC19 PRJEB3084 Annotation submitted by SC SC SC 40 2138397 2019-04-18T15:39:26Z 2015-01-27T00:00:00.000 2009206314 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHTU02 2008 GPSC19 substr. ST433 6.10 2015-01-27T09:20:52Z Prokka current 40 GPS_US_2009206314-sc-2138397 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHTU02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-22 GPSC19 species_match 98.81 SAMEA2521643 3 Streptococcus pneumoniae 88.91 Streptococcus pneumoniae 1313 PRJEB3084 3 current na 394824 type Streptococcus pneumoniae 2019-05-12 23A 23A species Homo sapiens 2091 Streptococcus pneumoniae Streptococcus pneumoniae ERS455183 SC 2012 v1.2.4 2014-09-17T09:08:15.753 98.73 2089494 88.91 1313 2138 Streptococcus pneumoniae 2024-02-06T15:55:09.000 2091054 338943 2089485 blood Homo sapiens Streptococcus pneumoniae IPD ST338 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900056415.2 type blood 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 28.0456 https://www.ncbi.nlm.nih.gov/nuccore/FHSV00000000.2 2014-09-16T09:22:31Z GCA_900056415.2 haploid public 2012214921-sc-1946935 88.01 0.38 27 2015-08-10T19:57:10 GCA_001457635.1 827422 47 13414_2#92 2012214921-sc-1946935 USA 13414_2#92 SAMEA2521643 1313 GCF_900056415.2 Generic.1.0 88.01 SRA GCF_900056415.2 category_na live 2019-04-18T15:39:24Z GPSC5 PRJEB3084 GCF_900056415.2-RS_2025_12_27 SC SC 21 1946935 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2012214921 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSV02 2012 2245STDY5819609 2014-09-16T09:22:31Z Prokka current 21 2012214921-sc-1946935 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSV02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC5 species_match 98.7 SAMEA2521643 3 Streptococcus pneumoniae 88.91 Streptococcus pneumoniae 1313 PRJEB3084 3 current na Best-placed reference protein set; GeneMarkS-2+ 394824 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-27 23A 23A species Homo sapiens 1984 Streptococcus pneumoniae Streptococcus pneumoniae ERS455183 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:15.753 98.73 2089494 88.91 1313 2191 Streptococcus pneumoniae 2024-02-06T15:55:09.000 2091054 338943 2089485 blood Homo sapiens Streptococcus pneumoniae IPD 154 ST338 EBI 100 GCA_001457635.1 GCF_900056415.2-RS_2025_12_27 SLX Streptococcus pneumoniae GCF_900056415.2 type blood 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 28.0456 https://www.ncbi.nlm.nih.gov/nuccore/FHSV00000000.2 2014-09-16T09:22:31Z GCF_900056415.2 haploid public 2012214921-sc-1946935 88.01 0.38 27 2015-08-10T19:57:10 GCA_001457635.1 827422 53 13414_2#92 2012214921-sc-1946935 USA 13414_2#92 SAMEA2521643 1313 GCA_900056415.2 Generic.1.0 88.01 SRA GCA_900056415.2 category_na live 2019-04-18T15:39:24Z GPSC5 PRJEB3084 Annotation submitted by SC SC SC 21 1946935 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2012214921 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSV02 2012 GPSC5 substr. ST338 6.10 2014-09-16T09:22:31Z Prokka current 21 2012214921-sc-1946935 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSV02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC5 species_match 98.7 SAMEA2383184 4 Streptococcus pneumoniae 89.19 Streptococcus pneumoniae 1313 PRJEB4909 5 current na 151015 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2108 Streptococcus pneumoniae Streptococcus pneumoniae ERS409509 SC 2006/2012 v1.2.4 2014-07-17T08:09:38.306 98.96 2089251 89.19 1313 2153 2024-02-06T06:52:03.000 2090433 151015 2089250 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900037495.1 type blood 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 45.2084 https://www.ncbi.nlm.nih.gov/nuccore/FEKY00000000.1 2014-07-16T11:40:13Z GCA_900037495.1 haploid public 2110548_II-sc-1870435 88.27 0.69 22 2015-08-10T19:44:21 GCA_001457635.1 827489 45 12754_3#69 2110548_II-sc-1870435 Netherlands 12754_3#69 SAMEA2383184 1313 GCF_900037495.1 Generic.1.0 88.27 SRA GCF_900037495.1 category_na live 2018-03-09T10:42:29Z 2842STDY5753730 PRJEB4909 GCF_900037495.1-RS_2025_09_21 SC SC 18 1870435 2018-03-09T10:42:29Z 2014-07-16T00:00:00.000 2110548_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEKY01 2006/2012 2842STDY5753730 2014-07-16T11:40:13Z Prokka current 18 2110548_II-sc-1870435 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEKY01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753730 species_match 98.76 SAMEA2383184 4 Streptococcus pneumoniae 89.19 Streptococcus pneumoniae 1313 PRJEB4909 5 current na Best-placed reference protein set; GeneMarkS-2+ 151015 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1966 Streptococcus pneumoniae Streptococcus pneumoniae ERS409509 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:38.306 98.96 2089251 89.19 1313 2194 2024-02-06T06:52:03.000 2090433 151015 2089250 blood Homo sapiens Streptococcus pneumoniae Disease 176 EBI 100 GCA_001457635.1 GCF_900037495.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900037495.1 type blood 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 45.2084 https://www.ncbi.nlm.nih.gov/nuccore/FEKY00000000.1 2014-07-16T11:40:13Z GCF_900037495.1 haploid public 2110548_II-sc-1870435 88.27 0.69 22 2015-08-10T19:44:21 GCA_001457635.1 827489 52 12754_3#69 2110548_II-sc-1870435 Netherlands 12754_3#69 SAMEA2383184 1313 GCA_900037495.1 Generic.1.0 88.27 SRA GCA_900037495.1 category_na live 2018-03-09T10:42:29Z 2842STDY5753730 PRJEB4909 Annotation submitted by SC SC SC 18 1870435 2018-03-09T10:42:29Z 2014-07-16T00:00:00.000 2110548_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEKY01 2006/2012 2842STDY5753730 6.10 2014-07-16T11:40:13Z Prokka current 18 2110548_II-sc-1870435 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEKY01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753730 species_match 98.76 SAMEA2521560 4 Streptococcus pneumoniae 88.7 Streptococcus pneumoniae 1313 PRJEB3084 5 current na 216572 type Streptococcus pneumoniae 2019-05-14 23A 23A species Homo sapiens 2086 Streptococcus pneumoniae Streptococcus pneumoniae ERS455100 SC 2012 v1.2.4 2014-09-17T09:08:12.840 98.91 2086620 88.7 1313 2133 Streptococcus pneumoniae 2024-02-06T15:55:06.000 2088416 128344 2086618 blood Homo sapiens Streptococcus pneumoniae IPD ST338 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900057885.2 type blood 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 41.0153 https://www.ncbi.nlm.nih.gov/nuccore/FHQG00000000.2 2014-09-16T09:22:32Z GCA_900057885.2 haploid public 2012214417-sc-1946852 87.68 0.38 33 2015-08-10T19:57:07 GCA_001457635.1 826271 47 13414_2#9 2012214417-sc-1946852 USA 13414_2#9 SAMEA2521560 1313 GCF_900057885.2 Generic.1.0 87.68 SRA GCF_900057885.2 category_na live 2019-04-18T15:39:23Z GPSC5 PRJEB3084 GCF_900057885.2-RS_2025_12_28 SC SC 26 1946852 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012214417 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQG02 2012 2245STDY5819526 2014-09-16T09:22:32Z Prokka current 26 2012214417-sc-1946852 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQG02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-14 GPSC5 species_match 98.7 SAMEA2521560 4 Streptococcus pneumoniae 88.7 Streptococcus pneumoniae 1313 PRJEB3084 5 current na Best-placed reference protein set; GeneMarkS-2+ 216572 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-28 23A 23A species Homo sapiens 1976 Streptococcus pneumoniae Streptococcus pneumoniae ERS455100 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:12.840 98.91 2086620 88.7 1313 2187 Streptococcus pneumoniae 2024-02-06T15:55:06.000 2088416 128344 2086618 blood Homo sapiens Streptococcus pneumoniae IPD 158 ST338 EBI 100 GCA_001457635.1 GCF_900057885.2-RS_2025_12_28 SLX Streptococcus pneumoniae GCF_900057885.2 type blood 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 41.0153 https://www.ncbi.nlm.nih.gov/nuccore/FHQG00000000.2 2014-09-16T09:22:32Z GCF_900057885.2 haploid public 2012214417-sc-1946852 87.68 0.38 33 2015-08-10T19:57:07 GCA_001457635.1 826271 53 13414_2#9 2012214417-sc-1946852 USA 13414_2#9 SAMEA2521560 1313 GCA_900057885.2 Generic.1.0 87.68 SRA GCA_900057885.2 category_na live 2019-04-18T15:39:23Z GPSC5 PRJEB3084 Annotation submitted by SC SC SC 26 1946852 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012214417 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQG02 2012 GPSC5 substr. ST338 6.10 2014-09-16T09:22:32Z Prokka current 26 2012214417-sc-1946852 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQG02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-14 GPSC5 species_match 98.7 SAMEA2238885 5 Streptococcus pneumoniae 89.26 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 120767 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2095 Streptococcus pneumoniae Streptococcus pneumoniae ERS367697 SC 2006/2012 v1.2.4 2014-05-07T08:35:04.150 98.94 2086888 89.26 1313 2140 2024-02-06T05:27:56.000 2088036 117456 2086886 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900030025.1 type CSF 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FCVP00000000.1 2014-03-18T09:35:30Z GCA_900030025.1 haploid public 2110548-sc-2013-11-05T12:04:21Z-1750249 88.24 0.69 36 2015-08-10T19:24:31 GCA_001457635.1 826560 45 11861_3#32 2110548-sc-2013-11-05T12:04:21Z-1750249 Netherlands 11861_3#32 SAMEA2238885 1313 GCF_900030025.1 Generic.1.0 88.24 SRA GCF_900030025.1 category_na live 2018-03-09T10:30:35Z 2842STDY5644260 PRJEB4909 GCF_900030025.1-RS_2025_09_28 SC SC 31 1750249 2018-03-09T10:30:35Z 2014-03-18T00:00:00.000 2110548 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCVP01 2006/2012 2842STDY5644260 2014-03-18T09:35:30Z Prokka current 31 2110548-sc-2013-11-05T12:04:21Z-1750249 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCVP01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644260 species_match 98.76 SAMEA2238885 5 Streptococcus pneumoniae 89.26 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 120767 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1979 Streptococcus pneumoniae Streptococcus pneumoniae ERS367697 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:04.150 98.94 2086888 89.26 1313 2208 2024-02-06T05:27:56.000 2088036 117456 2086886 CSF Homo sapiens Streptococcus pneumoniae Disease 177 EBI 100 GCA_001457635.1 GCF_900030025.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900030025.1 type CSF 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FCVP00000000.1 2014-03-18T09:35:30Z GCF_900030025.1 haploid public 2110548-sc-2013-11-05T12:04:21Z-1750249 88.24 0.69 36 2015-08-10T19:24:31 GCA_001457635.1 826560 52 11861_3#32 2110548-sc-2013-11-05T12:04:21Z-1750249 Netherlands 11861_3#32 SAMEA2238885 1313 GCA_900030025.1 Generic.1.0 88.24 SRA GCA_900030025.1 category_na live 2018-03-09T10:30:35Z 2842STDY5644260 PRJEB4909 Annotation submitted by SC SC SC 31 1750249 2018-03-09T10:30:35Z 2014-03-18T00:00:00.000 2110548 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCVP01 2006/2012 2842STDY5644260 6.10 2014-03-18T09:35:30Z Prokka current 31 2110548-sc-2013-11-05T12:04:21Z-1750249 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCVP01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644260 species_match 98.76 SAMEA2521654 6 Streptococcus pneumoniae 93.82 Streptococcus pneumoniae 1313 PRJEB3084 7 current na 118591 type Streptococcus pneumoniae 2019-05-14 22F 22F species Homo sapiens 2051 Streptococcus pneumoniae Streptococcus pneumoniae ERS455194 SC 2012 v1.2.4 2014-09-17T09:08:16.073 99.3 2064099 93.82 1313 2099 Streptococcus pneumoniae 2024-02-06T15:55:10.000 2065027 104840 2064098 blood Homo sapiens Streptococcus pneumoniae IPD ST433 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900049335.2 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 80.2701 https://www.ncbi.nlm.nih.gov/nuccore/FHTA00000000.2 2014-09-16T09:22:31Z GCA_900049335.2 haploid public 2012218235-sc-1946947 88.25 0.62 36 2018-03-10T19:14:20 GCA_053203845.1 815412 48 13414_3#8 2012218235-sc-1946947 USA 13414_3#8 SAMEA2521654 1313 GCF_900049335.2 Generic.1.0 88.25 SRA GCF_900049335.2 category_na live 2019-04-18T15:39:24Z GPSC19 PRJEB3084 GCF_900049335.2-RS_2026_01_18 SC SC 33 1946947 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2012218235 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHTA02 2012 2245STDY5819621 2014-09-16T09:22:31Z Prokka current 33 2012218235-sc-1946947 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHTA02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-14 GPSC19 species_match 98.84 SAMEA2521654 6 Streptococcus pneumoniae 93.82 Streptococcus pneumoniae 1313 PRJEB3084 7 current na Best-placed reference protein set; GeneMarkS-2+ 118591 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 22F 22F species Homo sapiens 1944 Streptococcus pneumoniae Streptococcus pneumoniae ERS455194 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:16.073 99.3 2064099 93.82 1313 2162 Streptococcus pneumoniae 2024-02-06T15:55:10.000 2065027 104840 2064098 blood Homo sapiens Streptococcus pneumoniae IPD 164 ST433 EBI 100 GCA_053203845.1 GCF_900049335.2-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_900049335.2 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 80.2701 https://www.ncbi.nlm.nih.gov/nuccore/FHTA00000000.2 2014-09-16T09:22:31Z GCF_900049335.2 haploid public 2012218235-sc-1946947 88.25 0.62 36 2018-03-10T19:14:20 GCA_053203845.1 815412 54 13414_3#8 2012218235-sc-1946947 USA 13414_3#8 SAMEA2521654 1313 GCA_900049335.2 Generic.1.0 88.25 SRA GCA_900049335.2 category_na live 2019-04-18T15:39:24Z GPSC19 PRJEB3084 Annotation submitted by SC SC SC 33 1946947 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2012218235 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHTA02 2012 GPSC19 substr. ST433 6.10 2014-09-16T09:22:31Z Prokka current 33 2012218235-sc-1946947 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHTA02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-14 GPSC19 species_match 98.84 SAMEA2383207 6 Streptococcus pneumoniae 88.09 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 138681 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2104 Streptococcus pneumoniae Streptococcus pneumoniae ERS409532 SC 2006/2012 v1.2.4 2014-07-17T08:09:39.440 98.96 2111672 88.09 1313 2147 2024-02-06T06:55:30.000 2113956 96446 2111661 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900019855.1 type blood 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 45.2084 https://www.ncbi.nlm.nih.gov/nuccore/FELV00000000.1 2014-07-16T11:40:12Z GCA_900019855.1 haploid public 2111189_II-sc-1870458 88.12 0.33 36 2015-08-10T19:44:22 GCA_001457635.1 832768 43 12754_3#92 2111189_II-sc-1870458 Netherlands 12754_3#92 SAMEA2383207 1313 GCF_900019855.1 Generic.1.0 88.12 SRA GCF_900019855.1 category_na live 2018-03-09T10:42:59Z 2842STDY5753753 PRJEB4909 GCF_900019855.1-RS_2025_09_21 SC SC 26 1870458 2018-03-09T10:42:59Z 2014-07-16T00:00:00.000 2111189_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FELV01 2006/2012 2842STDY5753753 2014-07-16T11:40:12Z Prokka current 26 2111189_II-sc-1870458 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FELV01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753753 species_match 98.7 SAMEA2383207 6 Streptococcus pneumoniae 88.09 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 138681 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1972 Streptococcus pneumoniae Streptococcus pneumoniae ERS409532 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:39.440 98.96 2111672 88.09 1313 2202 2024-02-06T06:55:30.000 2113956 96446 2111661 blood Homo sapiens Streptococcus pneumoniae Disease 182 EBI 100 GCA_001457635.1 GCF_900019855.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900019855.1 type blood 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 45.2084 https://www.ncbi.nlm.nih.gov/nuccore/FELV00000000.1 2014-07-16T11:40:12Z GCF_900019855.1 haploid public 2111189_II-sc-1870458 88.12 0.33 36 2015-08-10T19:44:22 GCA_001457635.1 832768 48 12754_3#92 2111189_II-sc-1870458 Netherlands 12754_3#92 SAMEA2383207 1313 GCA_900019855.1 Generic.1.0 88.12 SRA GCA_900019855.1 category_na live 2018-03-09T10:42:59Z 2842STDY5753753 PRJEB4909 Annotation submitted by SC SC SC 26 1870458 2018-03-09T10:42:59Z 2014-07-16T00:00:00.000 2111189_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FELV01 2006/2012 2842STDY5753753 6.10 2014-07-16T11:40:12Z Prokka current 26 2111189_II-sc-1870458 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FELV01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753753 species_match 98.7 SAMEA2674694 4 Streptococcus pneumoniae 93.6 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 158666 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2035 Streptococcus pneumoniae Streptococcus pneumoniae ERS515209 SC 2006/2012 v1.2.4 2015-01-29T08:41:18.350 98.65 2038137 93.6 1313 2078 2024-02-06T09:23:30.000 2041714 83105 2038135 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900025965.1 type CSF 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 24.3902 https://www.ncbi.nlm.nih.gov/nuccore/FCZS00000000.1 2015-01-08T09:41:19Z GCA_900025965.1 haploid public 980161-sc-2020047 86.94 0.31 35 2015-08-11T21:54:00 GCA_053203845.1 807737 43 14412_3#59 980161-sc-2020047 Netherlands 14412_3#59 SAMEA2674694 1313 GCF_900025965.1 Generic.1.0 86.94 SRA GCF_900025965.1 category_na live 2018-03-09T13:35:53Z 2842STDY5881942 PRJEB4909 GCF_900025965.1-RS_2026_01_25 SC SC 20 2020047 2018-03-09T13:35:53Z 2015-01-08T00:00:00.000 980161 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCZS01 2006/2012 2842STDY5881942 2015-01-08T09:41:19Z Prokka current 20 980161-sc-2020047 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCZS01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5881942 species_match 98.71 SAMEA2674694 4 Streptococcus pneumoniae 93.6 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 158666 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1908 Streptococcus pneumoniae Streptococcus pneumoniae ERS515209 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2015-01-29T08:41:18.350 98.65 2038137 93.6 1313 2130 2024-02-06T09:23:30.000 2041714 83105 2038135 CSF Homo sapiens Streptococcus pneumoniae Disease 173 EBI 100 GCA_053203845.1 GCF_900025965.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900025965.1 type CSF 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 24.3902 https://www.ncbi.nlm.nih.gov/nuccore/FCZS00000000.1 2015-01-08T09:41:19Z GCF_900025965.1 haploid public 980161-sc-2020047 86.94 0.31 35 2015-08-11T21:54:00 GCA_053203845.1 807737 49 14412_3#59 980161-sc-2020047 Netherlands 14412_3#59 SAMEA2674694 1313 GCA_900025965.1 Generic.1.0 86.94 SRA GCA_900025965.1 category_na live 2018-03-09T13:35:53Z 2842STDY5881942 PRJEB4909 Annotation submitted by SC SC SC 20 2020047 2018-03-09T13:35:53Z 2015-01-08T00:00:00.000 980161 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCZS01 2006/2012 2842STDY5881942 6.10 2015-01-08T09:41:19Z Prokka current 20 980161-sc-2020047 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCZS01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5881942 species_match 98.71 SAMEA2521530 4 Streptococcus pneumoniae 94.18 Streptococcus pneumoniae 1313 PRJEB3084 8 current na 124159 type Streptococcus pneumoniae 2019-05-12 22F 22F species Homo sapiens 2010 Streptococcus pneumoniae Streptococcus pneumoniae ERS455070 SC 2012 v1.2.4 2014-09-17T09:08:11.813 98.96 2042590 94.18 1313 2056 Streptococcus pneumoniae 2024-02-06T15:55:05.000 2045777 81031 2042590 blood Homo sapiens Streptococcus pneumoniae IPD ST7314 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900050335.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 45.2084 https://www.ncbi.nlm.nih.gov/nuccore/FHPJ00000000.2 2014-09-16T09:22:33Z GCA_900050335.2 haploid public 2013211438-sc-1946821 87.66 0.62 40 2015-08-10T19:57:06 GCA_053203845.1 807647 46 13414_1#74 2013211438-sc-1946821 USA 13414_1#74 SAMEA2521530 1313 GCF_900050335.2 Generic.1.0 87.66 SRA GCF_900050335.2 category_na live 2019-04-18T15:39:23Z GPSC19 PRJEB3084 GCF_900050335.2-RS_2025_12_29 SC SC 27 1946821 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013211438 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPJ02 2012 2245STDY5819495 2014-09-16T09:22:33Z Prokka current 27 2013211438-sc-1946821 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPJ02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC19 species_match 98.87 SAMEA2521530 4 Streptococcus pneumoniae 94.18 Streptococcus pneumoniae 1313 PRJEB3084 8 current na Best-placed reference protein set; GeneMarkS-2+ 124159 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-29 22F 22F species Homo sapiens 1920 Streptococcus pneumoniae Streptococcus pneumoniae ERS455070 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:11.813 98.96 2042590 94.18 1313 2137 Streptococcus pneumoniae 2024-02-06T15:55:05.000 2045777 81031 2042590 blood Homo sapiens Streptococcus pneumoniae IPD 164 ST7314 EBI 100 GCA_053203845.1 GCF_900050335.2-RS_2025_12_29 SLX Streptococcus pneumoniae GCF_900050335.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 45.2084 https://www.ncbi.nlm.nih.gov/nuccore/FHPJ00000000.2 2014-09-16T09:22:33Z GCF_900050335.2 haploid public 2013211438-sc-1946821 87.66 0.62 40 2015-08-10T19:57:06 GCA_053203845.1 807647 53 13414_1#74 2013211438-sc-1946821 USA 13414_1#74 SAMEA2521530 1313 GCA_900050335.2 Generic.1.0 87.66 SRA GCA_900050335.2 category_na live 2019-04-18T15:39:23Z GPSC19 PRJEB3084 Annotation submitted by SC SC SC 27 1946821 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013211438 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPJ02 2012 GPSC19 substr. ST7314 6.10 2014-09-16T09:22:33Z Prokka current 27 2013211438-sc-1946821 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPJ02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC19 species_match 98.87 SAMEA1463096 8 Streptococcus pneumoniae 92.97 Streptococcus pneumoniae 1313 PRJEB2632 8 current na 80068 type Streptococcus pneumoniae 2015-07-28 23A 23A species Homo sapiens 2005 Streptococcus pneumoniae Streptococcus pneumoniae ERS069946 SC 2007 v1.2.4 2012-06-06T09:06:32.476 98.96 2053447 92.97 1313 2036 2024-02-06T09:02:25.000 ON38S 2053447 80068 2053447 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001301455.2 type nasopharynx 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 45.2084 https://www.ncbi.nlm.nih.gov/nuccore/CHBW00000000.2 2012-05-28T10:19:34Z GCA_001301455.2 haploid public BR1090-sc-2011-11-08T10:06:44Z-1298314 87.0 0.69 122 2015-09-10T08:20:47 ON38S GCA_053203845.1 812917 31 7622_2#31 BR1090-sc-2011-11-08T10:06:44Z-1298314 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463096 1313 GCF_001301455.1 Generic.1.0 87.0 SRA GCF_001301455.1 category_na live 2018-03-09T11:44:07Z BR1090 PRJEB2632 GCF_001301455.1-RS_2026_01_24 SC SC 122 ON38S 2018-03-09T11:44:07Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHBW02 2007 BR1090 2012-05-28T10:19:34Z Velvet current 122 BR1090-sc-2011-11-08T10:06:44Z-1298314 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CHBW02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-28 BR1090 species_match 98.7 SAMEA1463096 8 Streptococcus pneumoniae 92.97 Streptococcus pneumoniae 1313 PRJEB2632 8 current na Best-placed reference protein set; GeneMarkS-2+ 80068 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 23A 23A species Homo sapiens 1941 Streptococcus pneumoniae Streptococcus pneumoniae ERS069946 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:32.476 98.96 2053447 92.97 1313 2167 2024-02-06T09:02:25.000 ON38S 2053447 80068 2053447 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 173 EBI 100 GCA_053203845.1 GCF_001301455.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_001301455.1 type nasopharynx 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 45.2084 https://www.ncbi.nlm.nih.gov/nuccore/CHBW00000000.2 2012-05-28T10:19:34Z GCF_001301455.1 haploid public BR1090-sc-2011-11-08T10:06:44Z-1298314 87.0 0.69 122 2015-09-10T08:20:47 ON38S GCA_053203845.1 812917 53 7622_2#31 BR1090-sc-2011-11-08T10:06:44Z-1298314 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463096 1313 GCA_001301455.2 Generic.1.0 87.0 SRA GCA_001301455.2 category_na live 2018-03-09T11:44:07Z BR1090 PRJEB2632 Annotation submitted by SC SC SC 122 ON38S 2018-03-09T11:44:07Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHBW02 2007 BR1090 6.10 2012-05-28T10:19:34Z Velvet current 122 BR1090-sc-2011-11-08T10:06:44Z-1298314 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CHBW02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-28 BR1090 species_match 98.7 SAMEA2521498 6 Streptococcus pneumoniae 93.95 Streptococcus pneumoniae 1313 PRJEB3084 8 current na 97054 type Streptococcus pneumoniae 2019-05-15 22F 22F species Homo sapiens 2055 Streptococcus pneumoniae Streptococcus pneumoniae ERS455038 SC 2012 v1.2.4 2014-09-17T09:08:11.160 99.36 2067710 93.95 1313 2102 Streptococcus pneumoniae 2024-02-06T15:55:04.000 2069359 77659 2067710 blood Homo sapiens Streptococcus pneumoniae IPD ST433 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900056715.2 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 90.3527 https://www.ncbi.nlm.nih.gov/nuccore/FHOU00000000.2 2014-09-16T09:22:32Z GCA_900056715.2 haploid public 2013202610-sc-1946792 88.52 0.62 42 2018-03-10T19:14:14 GCA_053203845.1 816542 47 13414_1#45 2013202610-sc-1946792 USA 13414_1#45 SAMEA2521498 1313 GCF_900056715.2 Generic.1.0 88.52 SRA GCF_900056715.2 category_na live 2019-04-18T15:39:22Z GPSC19 PRJEB3084 GCF_900056715.2-RS_2026_01_14 SC SC 36 1946792 2019-04-18T15:39:22Z 2014-09-16T00:00:00.000 2013202610 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHOU02 2012 2245STDY5819466 2014-09-16T09:22:32Z Prokka current 36 2013202610-sc-1946792 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHOU02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-15 GPSC19 species_match 98.86 SAMEA2521498 6 Streptococcus pneumoniae 93.95 Streptococcus pneumoniae 1313 PRJEB3084 8 current na Best-placed reference protein set; GeneMarkS-2+ 97054 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-14 22F 22F species Homo sapiens 1944 Streptococcus pneumoniae Streptococcus pneumoniae ERS455038 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:11.160 99.36 2067710 93.95 1313 2157 Streptococcus pneumoniae 2024-02-06T15:55:04.000 2069359 77659 2067710 blood Homo sapiens Streptococcus pneumoniae IPD 160 ST433 EBI 100 GCA_053203845.1 GCF_900056715.2-RS_2026_01_14 SLX Streptococcus pneumoniae GCF_900056715.2 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 90.3527 https://www.ncbi.nlm.nih.gov/nuccore/FHOU00000000.2 2014-09-16T09:22:32Z GCF_900056715.2 haploid public 2013202610-sc-1946792 88.52 0.62 42 2018-03-10T19:14:14 GCA_053203845.1 816542 53 13414_1#45 2013202610-sc-1946792 USA 13414_1#45 SAMEA2521498 1313 GCA_900056715.2 Generic.1.0 88.52 SRA GCA_900056715.2 category_na live 2019-04-18T15:39:22Z GPSC19 PRJEB3084 Annotation submitted by SC SC SC 36 1946792 2019-04-18T15:39:22Z 2014-09-16T00:00:00.000 2013202610 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHOU02 2012 GPSC19 substr. ST433 6.10 2014-09-16T09:22:32Z Prokka current 36 2013202610-sc-1946792 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHOU02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-15 GPSC19 species_match 98.86 SAMEA2336017 5 Streptococcus pneumoniae 88.49 Streptococcus pneumoniae 1313 PRJEB3084 7 current na 143291 type Streptococcus pneumoniae 2019-05-15 23B 23B species Homo sapiens 2124 Streptococcus pneumoniae Streptococcus pneumoniae ERS394211 SC 2009 v1.2.4 2014-05-20T08:07:33.406 99.04 2112677 88.49 1313 2169 Streptococcus pneumoniae 2024-02-06T15:54:55.000 2117046 113794 2112675 blood Homo sapiens Streptococcus pneumoniae IPD ST439 EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900057125.2 type blood 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae 49.4655 https://www.ncbi.nlm.nih.gov/nuccore/FHLG00000000.2 2014-05-19T10:21:06Z GCA_900057125.2 haploid public 2010208374-sc-1810945 89.34 0.31 48 2015-08-10T19:29:23 GCA_001679515.1 836358 45 12291_4#85 2010208374-sc-1810945 USA 12291_4#85 SAMEA2336017 1313 GCF_900057125.2 Generic.1.0 89.34 SRA GCF_900057125.2 category_na live 2019-04-18T15:39:20Z GPSC7 PRJEB3084 GCF_900057125.2-RS_2025_12_30 SC SC 31 1810945 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2010208374 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHLG02 2009 2245STDY5699110 2014-05-19T10:21:06Z Prokka current 31 2010208374-sc-1810945 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHLG02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-15 GPSC7 species_match 98.72 SAMEA2336017 5 Streptococcus pneumoniae 88.49 Streptococcus pneumoniae 1313 PRJEB3084 7 current na Best-placed reference protein set; GeneMarkS-2+ 143291 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-30 23B 23B species Homo sapiens 2027 Streptococcus pneumoniae Streptococcus pneumoniae ERS394211 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-05-20T08:07:33.406 99.04 2112677 88.49 1313 2245 Streptococcus pneumoniae 2024-02-06T15:54:55.000 2117046 113794 2112675 blood Homo sapiens Streptococcus pneumoniae IPD 166 ST439 EBI 100 GCA_001679515.1 GCF_900057125.2-RS_2025_12_30 SLX Streptococcus pneumoniae GCF_900057125.2 type blood 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae 49.4655 https://www.ncbi.nlm.nih.gov/nuccore/FHLG00000000.2 2014-05-19T10:21:06Z GCF_900057125.2 haploid public 2010208374-sc-1810945 89.34 0.31 48 2015-08-10T19:29:23 GCA_001679515.1 836358 52 12291_4#85 2010208374-sc-1810945 USA 12291_4#85 SAMEA2336017 1313 GCA_900057125.2 Generic.1.0 89.34 SRA GCA_900057125.2 category_na live 2019-04-18T15:39:20Z GPSC7 PRJEB3084 Annotation submitted by SC SC SC 31 1810945 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2010208374 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHLG02 2009 GPSC7 substr. ST439 6.10 2014-05-19T10:21:06Z Prokka current 31 2010208374-sc-1810945 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHLG02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-15 GPSC7 species_match 98.72 SAMEA2203819 4 Streptococcus pneumoniae 90.73 Streptococcus pneumoniae 1313 PRJEB3084 8 current na 218165 type Streptococcus pneumoniae 2019-05-16 23B 23B species Homo sapiens 2145 Streptococcus pneumoniae Streptococcus pneumoniae ERS356323 SC 2009 v1.2.4 2014-02-28T18:05:44.916 98.91 2133730 90.73 1313 2195 Streptococcus pneumoniae 2024-02-06T15:54:48.000 2137862 109761 2133728 blood Homo sapiens Streptococcus pneumoniae Bacteremia ST1373 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900044845.2 type blood 98.6 ERC000011 OK 39.5 Streptococcus pneumoniae 41.0153 https://www.ncbi.nlm.nih.gov/nuccore/FFSH00000000.2 2014-02-18T09:20:03Z GCA_900044845.2 haploid public 2010208312-sc-2013-10-09T11:50:00Z-1712408 88.22 0.31 43 2015-08-10T19:05:35 GCA_053203845.1 845614 50 11658_2#93 2010208312-sc-2013-10-09T11:50:00Z-1712408 USA 11658_2#93 SAMEA2203819 1313 GCF_900044845.2 Generic.1.0 88.22 SRA GCF_900044845.2 category_na live 2019-04-18T15:39:18Z GPSC5 PRJEB3084 GCF_900044845.2-RS_2025_12_27 SC SC 28 1712408 2019-04-18T15:39:18Z 2014-02-18T00:00:00.000 2010208312 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFSH02 2009 2245STDY5608958 2014-02-18T09:20:03Z Prokka current 28 2010208312-sc-2013-10-09T11:50:00Z-1712408 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFSH02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-16 GPSC5 species_match 98.6 SAMEA2203819 4 Streptococcus pneumoniae 90.73 Streptococcus pneumoniae 1313 PRJEB3084 8 current na Best-placed reference protein set; GeneMarkS-2+ 218165 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-27 23B 23B species Homo sapiens 2047 Streptococcus pneumoniae Streptococcus pneumoniae ERS356323 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-02-28T18:05:44.916 98.91 2133730 90.73 1313 2265 Streptococcus pneumoniae 2024-02-06T15:54:48.000 2137862 109761 2133728 blood Homo sapiens Streptococcus pneumoniae Bacteremia 158 ST1373 EBI 100 GCA_053203845.1 GCF_900044845.2-RS_2025_12_27 SLX Streptococcus pneumoniae GCF_900044845.2 type blood 98.6 ERC000011 OK 39.5 Streptococcus pneumoniae 41.0153 https://www.ncbi.nlm.nih.gov/nuccore/FFSH00000000.2 2014-02-18T09:20:03Z GCF_900044845.2 haploid public 2010208312-sc-2013-10-09T11:50:00Z-1712408 88.22 0.31 43 2015-08-10T19:05:35 GCA_053203845.1 845614 60 11658_2#93 2010208312-sc-2013-10-09T11:50:00Z-1712408 USA 11658_2#93 SAMEA2203819 1313 GCA_900044845.2 Generic.1.0 88.22 SRA GCA_900044845.2 category_na live 2019-04-18T15:39:18Z GPSC5 PRJEB3084 Annotation submitted by SC SC SC 28 1712408 2019-04-18T15:39:18Z 2014-02-18T00:00:00.000 2010208312 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFSH02 2009 GPSC5 substr. ST1373 6.10 2014-02-18T09:20:03Z Prokka current 28 2010208312-sc-2013-10-09T11:50:00Z-1712408 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFSH02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-16 GPSC5 species_match 98.6 SAMEA2238860 6 Streptococcus pneumoniae 92.55 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 123984 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2139 Streptococcus pneumoniae Streptococcus pneumoniae ERS367672 SC 2006/2012 v1.2.4 2014-05-07T08:35:02.170 98.71 2120145 92.55 1313 2185 2024-02-06T05:06:18.000 2121292 106467 2120144 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900029435.1 type CSF 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 27.1686 https://www.ncbi.nlm.nih.gov/nuccore/FCUX00000000.1 2014-03-18T09:35:30Z GCA_900029435.1 haploid public 2110097-sc-2013-11-05T12:03:56Z-1750224 89.42 0.69 33 2015-08-10T19:24:29 GCA_053203845.1 838221 46 11861_3#5 2110097-sc-2013-11-05T12:03:56Z-1750224 Netherlands 11861_3#5 SAMEA2238860 1313 GCF_900029435.1 Generic.1.0 89.42 SRA GCF_900029435.1 category_na live 2018-03-09T10:27:57Z 2842STDY5644235 PRJEB4909 GCF_900029435.1-RS_2025_12_21 SC SC 29 1750224 2018-03-09T10:27:57Z 2014-03-18T00:00:00.000 2110097 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUX01 2006/2012 2842STDY5644235 2014-03-18T09:35:30Z Prokka current 29 2110097-sc-2013-11-05T12:03:56Z-1750224 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUX01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644235 species_match 98.7 SAMEA2238860 6 Streptococcus pneumoniae 92.55 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 123984 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-21 species Homo sapiens 2040 Streptococcus pneumoniae Streptococcus pneumoniae ERS367672 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:02.170 98.71 2120145 92.55 1313 2256 2024-02-06T05:06:18.000 2121292 106467 2120144 CSF Homo sapiens Streptococcus pneumoniae Disease 163 EBI 100 GCA_053203845.1 GCF_900029435.1-RS_2025_12_21 SLX Streptococcus pneumoniae GCF_900029435.1 type CSF 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 27.1686 https://www.ncbi.nlm.nih.gov/nuccore/FCUX00000000.1 2014-03-18T09:35:30Z GCF_900029435.1 haploid public 2110097-sc-2013-11-05T12:03:56Z-1750224 89.42 0.69 33 2015-08-10T19:24:29 GCA_053203845.1 838221 53 11861_3#5 2110097-sc-2013-11-05T12:03:56Z-1750224 Netherlands 11861_3#5 SAMEA2238860 1313 GCA_900029435.1 Generic.1.0 89.42 SRA GCA_900029435.1 category_na live 2018-03-09T10:27:57Z 2842STDY5644235 PRJEB4909 Annotation submitted by SC SC SC 29 1750224 2018-03-09T10:27:57Z 2014-03-18T00:00:00.000 2110097 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUX01 2006/2012 2842STDY5644235 6.10 2014-03-18T09:35:30Z Prokka current 29 2110097-sc-2013-11-05T12:03:56Z-1750224 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUX01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644235 species_match 98.7 SAMEA1026578 7 Streptococcus pneumoniae 92.93 Streptococcus pneumoniae 1313 PRJEB2417 7 current na 98757 type Streptococcus pneumoniae 2017-06-27 23B 23B species Homo sapiens 2061 Streptococcus pneumoniae ERS023077 SC 2007-01-24 v1.2.4 2011-09-13T21:54:03.580 97.79 2084866 92.93 1313 2096 2017-06-24T15:26:25.000 2084866 98757 2084863 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900189275.1 type Nasophaynx 98.71 OK 39.5 Streptococcus pneumoniae 5.51181 https://www.ncbi.nlm.nih.gov/nuccore/FYHY00000000.1 2011-09-06 GCA_900189275.1 haploid ERS023077 88.3 0.69 46 2017-06-28T08:06:01 GCA_053203845.1 824817 35 6470_5#23 United Kingdom UoS0268-sc-2011-02-14-1078131; 6470_523 1313 GCF_900189275.1 Generic.1.0 88.3 SRA Sample Description GCF_900189275.1 category_na live 2017-06-22 UoS0268 PRJEB2417 GCF_900189275.1-RS_2025_09_04 SC 46 1078131 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYHY01 2007-01-24 UoS0268 Prokka current 46 ERS023077 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYHY01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS0268 species_match 98.71 SAMEA1026578 7 Streptococcus pneumoniae 92.93 Streptococcus pneumoniae 1313 PRJEB2417 7 current na Best-placed reference protein set; GeneMarkS-2+ 98757 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 23B 23B species Homo sapiens 1964 Streptococcus pneumoniae ERS023077 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007-01-24 v1.2.4 2011-09-13T21:54:03.580 97.79 2084866 92.93 1313 2174 2017-06-24T15:26:25.000 2084866 98757 2084863 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 172 EBI 100 GCA_053203845.1 GCF_900189275.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900189275.1 type Nasophaynx 98.71 OK 39.5 Streptococcus pneumoniae 5.51181 https://www.ncbi.nlm.nih.gov/nuccore/FYHY00000000.1 2011-09-06 GCF_900189275.1 haploid ERS023077 88.3 0.69 46 2017-06-28T08:06:01 GCA_053203845.1 824817 38 6470_5#23 United Kingdom UoS0268-sc-2011-02-14-1078131; 6470_523 1313 GCA_900189275.1 Generic.1.0 88.3 SRA Sample Description GCA_900189275.1 category_na live 2017-06-22 UoS0268 PRJEB2417 Annotation submitted by SC SC 46 1078131 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYHY01 2007-01-24 UoS0268 6.10 Prokka current 46 ERS023077 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYHY01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS0268 species_match 98.71 SAMEA1463142 9 Streptococcus pneumoniae 92.68 Streptococcus pneumoniae 1313 PRJEB2632 9 current na 81334 type Streptococcus pneumoniae 2015-07-28 23B 23B species Homo sapiens 2034 Streptococcus pneumoniae Streptococcus pneumoniae ERS070038 SC 2007 v1.2.4 2012-06-06T09:06:37.073 98.56 2080729 92.68 1313 2065 2024-02-05T23:02:37.000 3MB4Z 2080729 81334 2080729 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001301635.2 type nasopharynx 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 21.0166 https://www.ncbi.nlm.nih.gov/nuccore/CHXF00000000.2 2012-05-28T10:19:32Z GCA_001301635.2 haploid public LE4083-sc-2011-11-08T10:07:51Z-1298406 87.88 0.69 126 2015-09-10T08:20:50 3MB4Z GCA_053203845.1 823070 31 7622_4#27 LE4083-sc-2011-11-08T10:07:51Z-1298406 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463142 1313 GCF_001301635.1 Generic.1.0 87.88 SRA GCF_001301635.1 category_na live 2018-03-09T10:03:15Z LE4083 PRJEB2632 GCF_001301635.1-RS_2026_01_25 SC SC 126 3MB4Z 2018-03-09T10:03:15Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHXF02 2007 LE4083 2012-05-28T10:19:32Z Velvet current 126 LE4083-sc-2011-11-08T10:07:51Z-1298406 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CHXF02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-28 LE4083 species_match 98.78 SAMEA1463142 9 Streptococcus pneumoniae 92.68 Streptococcus pneumoniae 1313 PRJEB2632 9 current na Best-placed reference protein set; GeneMarkS-2+ 81334 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 23B 23B species Homo sapiens 1964 Streptococcus pneumoniae Streptococcus pneumoniae ERS070038 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:37.073 98.56 2080729 92.68 1313 2193 2024-02-05T23:02:37.000 3MB4Z 2080729 81334 2080729 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 179 EBI 100 GCA_053203845.1 GCF_001301635.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001301635.1 type nasopharynx 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 21.0166 https://www.ncbi.nlm.nih.gov/nuccore/CHXF00000000.2 2012-05-28T10:19:32Z GCF_001301635.1 haploid public LE4083-sc-2011-11-08T10:07:51Z-1298406 87.88 0.69 126 2015-09-10T08:20:50 3MB4Z GCA_053203845.1 823070 50 7622_4#27 LE4083-sc-2011-11-08T10:07:51Z-1298406 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463142 1313 GCA_001301635.2 Generic.1.0 87.88 SRA GCA_001301635.2 category_na live 2018-03-09T10:03:15Z LE4083 PRJEB2632 Annotation submitted by SC SC SC 126 3MB4Z 2018-03-09T10:03:15Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHXF02 2007 LE4083 6.10 2012-05-28T10:19:32Z Velvet current 126 LE4083-sc-2011-11-08T10:07:51Z-1298406 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CHXF02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-28 LE4083 species_match 98.78 SAMEA2521557 6 Streptococcus pneumoniae 92.88 Streptococcus pneumoniae 1313 PRJEB3084 8 current na 106899 type Streptococcus pneumoniae 2019-05-15 23B 23B species Homo sapiens 2068 Streptococcus pneumoniae Streptococcus pneumoniae ERS455097 SC 2012 v1.2.4 2014-09-17T09:08:12.760 98.52 2070187 92.88 1313 2113 Streptococcus pneumoniae 2024-02-06T15:55:06.000 2071704 80610 2070185 blood Homo sapiens Streptococcus pneumoniae IPD ST439 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900064855.2 type blood 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 18.9553 https://www.ncbi.nlm.nih.gov/nuccore/FHQF00000000.2 2014-09-16T09:22:33Z GCA_900064855.2 haploid public 2012213994-sc-1946849 87.63 0.69 41 2018-03-10T19:14:16 GCA_053203845.1 817841 45 13414_2#6 2012213994-sc-1946849 USA 13414_2#6 SAMEA2521557 1313 GCF_900064855.2 Generic.1.0 87.63 SRA GCF_900064855.2 category_na live 2019-04-18T15:39:23Z GPSC7 PRJEB3084 GCF_900064855.2-RS_2026_01_18 SC SC 36 1946849 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012213994 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQF02 2012 2245STDY5819523 2014-09-16T09:22:33Z Prokka current 36 2012213994-sc-1946849 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQF02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-15 GPSC7 species_match 98.78 SAMEA2521557 6 Streptococcus pneumoniae 92.88 Streptococcus pneumoniae 1313 PRJEB3084 8 current na Best-placed reference protein set; GeneMarkS-2+ 106899 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 23B 23B species Homo sapiens 1967 Streptococcus pneumoniae Streptococcus pneumoniae ERS455097 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:12.760 98.52 2070187 92.88 1313 2182 Streptococcus pneumoniae 2024-02-06T15:55:06.000 2071704 80610 2070185 blood Homo sapiens Streptococcus pneumoniae IPD 164 ST439 EBI 100 GCA_053203845.1 GCF_900064855.2-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_900064855.2 type blood 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 18.9553 https://www.ncbi.nlm.nih.gov/nuccore/FHQF00000000.2 2014-09-16T09:22:33Z GCF_900064855.2 haploid public 2012213994-sc-1946849 87.63 0.69 41 2018-03-10T19:14:16 GCA_053203845.1 817841 51 13414_2#6 2012213994-sc-1946849 USA 13414_2#6 SAMEA2521557 1313 GCA_900064855.2 Generic.1.0 87.63 SRA GCA_900064855.2 category_na live 2019-04-18T15:39:23Z GPSC7 PRJEB3084 Annotation submitted by SC SC SC 36 1946849 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012213994 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQF02 2012 GPSC7 substr. ST439 6.10 2014-09-16T09:22:33Z Prokka current 36 2012213994-sc-1946849 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQF02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-15 GPSC7 species_match 98.78 SAMEA2382936 6 Streptococcus pneumoniae 89.15 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 78040 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2124 Streptococcus pneumoniae Streptococcus pneumoniae ERS409261 SC 2006/2012 v1.2.4 2014-07-17T08:09:24.250 99.04 2118235 89.15 1313 2171 2024-02-06T06:50:49.000 2120060 78040 2118234 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900028395.1 type blood 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 49.4655 https://www.ncbi.nlm.nih.gov/nuccore/FDMD00000000.1 2014-07-16T11:40:12Z GCA_900028395.1 haploid public 2080027_II-sc-1870185 89.46 0.31 51 2015-08-10T19:44:10 GCA_001457635.1 837819 47 12754_1#11 2080027_II-sc-1870185 Netherlands 12754_1#11 SAMEA2382936 1313 GCF_900028395.1 Generic.1.0 89.46 SRA GCF_900028395.1 category_na live 2018-03-09T10:42:19Z 2842STDY5753480 PRJEB4909 GCF_900028395.1-RS_2026_01_11 SC SC 44 1870185 2018-03-09T10:42:19Z 2014-07-16T00:00:00.000 2080027_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDMD01 2006/2012 2842STDY5753480 2014-07-16T11:40:12Z Prokka current 44 2080027_II-sc-1870185 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDMD01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753480 species_match 98.7 SAMEA2382936 6 Streptococcus pneumoniae 89.15 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 78040 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 2024 Streptococcus pneumoniae Streptococcus pneumoniae ERS409261 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:24.250 99.04 2118235 89.15 1313 2254 2024-02-06T06:50:49.000 2120060 78040 2118234 blood Homo sapiens Streptococcus pneumoniae Disease 176 EBI 100 GCA_001457635.1 GCF_900028395.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900028395.1 type blood 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 49.4655 https://www.ncbi.nlm.nih.gov/nuccore/FDMD00000000.1 2014-07-16T11:40:12Z GCF_900028395.1 haploid public 2080027_II-sc-1870185 89.46 0.31 51 2015-08-10T19:44:10 GCA_001457635.1 837819 54 12754_1#11 2080027_II-sc-1870185 Netherlands 12754_1#11 SAMEA2382936 1313 GCA_900028395.1 Generic.1.0 89.46 SRA GCA_900028395.1 category_na live 2018-03-09T10:42:19Z 2842STDY5753480 PRJEB4909 Annotation submitted by SC SC SC 44 1870185 2018-03-09T10:42:19Z 2014-07-16T00:00:00.000 2080027_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDMD01 2006/2012 2842STDY5753480 6.10 2014-07-16T11:40:12Z Prokka current 44 2080027_II-sc-1870185 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDMD01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753480 species_match 98.7 SAMEA1463011 11 Streptococcus pneumoniae 93.12 Streptococcus pneumoniae 1313 PRJEB2632 11 current na 70438 type Streptococcus pneumoniae 2015-07-28 23B 23B species Homo sapiens 2009 Streptococcus pneumoniae Streptococcus pneumoniae ERS070129 SC 2007 v1.2.4 2012-05-15T12:05:31.426 98.61 2061312 93.12 1313 2040 2024-02-05T18:12:08.000 LFB15 2061312 70438 2061312 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001301095.2 type nasopharynx 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae 22.617 https://www.ncbi.nlm.nih.gov/nuccore/CFKB00000000.2 2012-05-09T10:03:17Z GCA_001301095.2 haploid public ND6144-sc-2011-11-08T10:08:58Z-1298497 87.48 0.69 139 2015-09-10T08:20:40 LFB15 GCA_053203845.1 814730 31 7553_4#22 ND6144-sc-2011-11-08T10:08:58Z-1298497 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463011 1313 GCF_001301095.1 Generic.1.0 87.48 SRA GCF_001301095.1 category_na live 2018-03-09T09:54:37Z ND6144 PRJEB2632 GCF_001301095.1-RS_2026_01_23 SC SC 139 LFB15 2018-03-09T09:54:37Z 2012-05-09T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFKB02 2007 ND6144 2012-05-09T10:03:17Z Velvet current 139 ND6144-sc-2011-11-08T10:08:58Z-1298497 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CFKB02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-28 ND6144 species_match 98.81 SAMEA1463011 11 Streptococcus pneumoniae 93.12 Streptococcus pneumoniae 1313 PRJEB2632 11 current na Best-placed reference protein set; GeneMarkS-2+ 70438 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-23 23B 23B species Homo sapiens 1947 Streptococcus pneumoniae Streptococcus pneumoniae ERS070129 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-05-15T12:05:31.426 98.61 2061312 93.12 1313 2175 2024-02-05T18:12:08.000 LFB15 2061312 70438 2061312 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 175 EBI 100 GCA_053203845.1 GCF_001301095.1-RS_2026_01_23 SLX Streptococcus pneumoniae GCF_001301095.1 type nasopharynx 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae 22.617 https://www.ncbi.nlm.nih.gov/nuccore/CFKB00000000.2 2012-05-09T10:03:17Z GCF_001301095.1 haploid public ND6144-sc-2011-11-08T10:08:58Z-1298497 87.48 0.69 139 2015-09-10T08:20:40 LFB15 GCA_053203845.1 814730 53 7553_4#22 ND6144-sc-2011-11-08T10:08:58Z-1298497 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463011 1313 GCA_001301095.2 Generic.1.0 87.48 SRA GCA_001301095.2 category_na live 2018-03-09T09:54:37Z ND6144 PRJEB2632 Annotation submitted by SC SC SC 139 LFB15 2018-03-09T09:54:37Z 2012-05-09T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFKB02 2007 ND6144 6.10 2012-05-09T10:03:17Z Velvet current 139 ND6144-sc-2011-11-08T10:08:58Z-1298497 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CFKB02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-28 ND6144 species_match 98.81 SAMEA1026035 11 Streptococcus pneumoniae 88.68 Streptococcus pneumoniae 1313 PRJEB2397 11 current na 70004 type Streptococcus pneumoniae 2015-07-14 23A 23A species Homo sapiens 2205 Streptococcus pneumoniae Streptococcus pneumoniae ERS021754 SC 2009-12-18 v1.2.4 2012-02-09T20:47:40.473 98.91 2190122 88.68 1313 2247 2024-02-06T09:04:56.000 2190122 70004 2190100 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001170485.1 type nasopharynx 98.55 OK 39.5 Streptococcus pneumoniae 41.0153 https://www.ncbi.nlm.nih.gov/nuccore/CMJM00000000.1 2012-02-07T17:03:03Z GCA_001170485.1 haploid public SMRU2245-sc-2011-01-27-1062458 88.51 5.43 70 2015-07-28T08:13:13 GCA_053203845.1 867762 42 7038_8#37 SMRU2245-sc-2011-01-27-1062458 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026035 1313 GCF_001170485.1 Generic.1.0 88.51 SRA GCF_001170485.1 category_na live 2018-03-09T12:27:14Z SMRU2245 PRJEB2397 GCF_001170485.1-RS_2026_02_04 SC SC 70 2018-03-09T12:27:14Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMJM01 2009-12-18 SMRU2245 2012-02-07T17:03:03Z Prokka current 70 SMRU2245-sc-2011-01-27-1062458 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMJM01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2245 species_match 98.55 SAMEA1026035 11 Streptococcus pneumoniae 88.68 Streptococcus pneumoniae 1313 PRJEB2397 11 current na Best-placed reference protein set; GeneMarkS-2+ 70004 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-04 23A 23A species Homo sapiens 2145 Streptococcus pneumoniae Streptococcus pneumoniae ERS021754 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-12-18 v1.2.4 2012-02-09T20:47:40.473 98.91 2190122 88.68 1313 2361 2024-02-06T09:04:56.000 2190122 70004 2190100 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 172 EBI 100 GCA_053203845.1 GCF_001170485.1-RS_2026_02_04 SLX Streptococcus pneumoniae GCF_001170485.1 type nasopharynx 98.55 OK 39.5 Streptococcus pneumoniae 41.0153 https://www.ncbi.nlm.nih.gov/nuccore/CMJM00000000.1 2012-02-07T17:03:03Z GCF_001170485.1 haploid public SMRU2245-sc-2011-01-27-1062458 88.51 5.43 70 2015-07-28T08:13:13 GCA_053203845.1 867762 44 7038_8#37 SMRU2245-sc-2011-01-27-1062458 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026035 1313 GCA_001170485.1 Generic.1.0 88.51 SRA GCA_001170485.1 category_na live 2018-03-09T12:27:14Z SMRU2245 PRJEB2397 Annotation submitted by SC SC SC 70 2018-03-09T12:27:14Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMJM01 2009-12-18 SMRU2245 6.10 2012-02-07T17:03:03Z Prokka current 70 SMRU2245-sc-2011-01-27-1062458 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMJM01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2245 species_match 98.55 SAMEA1026734 6 Streptococcus pneumoniae 91.13 Streptococcus pneumoniae 1313 PRJEB2417 6 current na 69072 type Streptococcus pneumoniae 2017-06-28 23B 23B species Homo sapiens 2137 Streptococcus pneumoniae ERS023299 SC 2009-03-11 v1.2.4 2011-09-23T19:14:02.446 98.7 2128289 91.13 1313 2185 2017-06-24T15:45:18.000 2128289 69072 2128284 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900191465.1 type Nasophaynx 98.69 OK 39.5 Streptococcus pneumoniae 27.0021 https://www.ncbi.nlm.nih.gov/nuccore/FYQZ00000000.1 2011-09-20 GCA_900191465.1 haploid ERS023299 88.39 0.31 53 2017-06-28T08:06:21 GCA_053203845.1 841856 48 6512_4#5 United Kingdom UoS3264-sc-2011-02-14-1078353; 6512_45 1313 GCF_900191465.1 Generic.1.0 88.39 SRA Sample Description GCF_900191465.1 category_na live 2017-06-22 UoS3264 PRJEB2417 GCF_900191465.1-RS_2025_09_01 SC 53 1078353 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYQZ01 2009-03-11 UoS3264 Prokka current 53 ERS023299 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYQZ01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-28 UoS3264 species_match 98.69 SAMEA1026734 6 Streptococcus pneumoniae 91.13 Streptococcus pneumoniae 1313 PRJEB2417 6 current na Best-placed reference protein set; GeneMarkS-2+ 69072 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-01 23B 23B species Homo sapiens 2048 Streptococcus pneumoniae ERS023299 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-11 v1.2.4 2011-09-23T19:14:02.446 98.7 2128289 91.13 1313 2271 2017-06-24T15:45:18.000 2128289 69072 2128284 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 172 EBI 100 GCA_053203845.1 GCF_900191465.1-RS_2025_09_01 SLX Streptococcus pneumoniae GCF_900191465.1 type Nasophaynx 98.69 OK 39.5 Streptococcus pneumoniae 27.0021 https://www.ncbi.nlm.nih.gov/nuccore/FYQZ00000000.1 2011-09-20 GCF_900191465.1 haploid ERS023299 88.39 0.31 53 2017-06-28T08:06:21 GCA_053203845.1 841856 51 6512_4#5 United Kingdom UoS3264-sc-2011-02-14-1078353; 6512_45 1313 GCA_900191465.1 Generic.1.0 88.39 SRA Sample Description GCA_900191465.1 category_na live 2017-06-22 UoS3264 PRJEB2417 Annotation submitted by SC SC 53 1078353 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYQZ01 2009-03-11 UoS3264 6.10 Prokka current 53 ERS023299 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYQZ01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-28 UoS3264 species_match 98.69 SAMEA1028887 5 Streptococcus pneumoniae 92.31 Streptococcus pneumoniae 1313 PRJEB2479 5 current na 136602 type Streptococcus pneumoniae 2015-07-14 23B 23B species Homo sapiens 2018 Streptococcus pneumoniae Streptococcus pneumoniae ERS021895 SC 2010-02-02 v1.2.4 2012-01-20T20:09:33.633 98.63 2047353 92.31 1313 2066 2024-02-06T09:02:43.000 2047374 136602 2047349 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001084285.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CLZJ00000000.1 2012-01-10T09:59:57Z GCA_001084285.1 haploid public SMRU2386-sc-2011-01-27-1062599 86.13 0.36 38 2015-07-28T08:12:49 GCA_053203845.1 812309 48 6983_8#82 SMRU2386-sc-2011-01-27-1062599 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028887 1313 GCF_001084285.1 Generic.1.0 86.13 SRA GCF_001084285.1 category_na live 2018-03-09T11:47:18Z SMRU2386 PRJEB2479 GCF_001084285.1-RS_2026_01_14 SC SC 37 2018-03-09T11:47:18Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLZJ01 2010-02-02 SMRU2386 2012-01-10T09:59:57Z Prokka current 37 SMRU2386-sc-2011-01-27-1062599 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLZJ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2386 species_match 98.76 SAMEA1028887 5 Streptococcus pneumoniae 92.31 Streptococcus pneumoniae 1313 PRJEB2479 5 current na Best-placed reference protein set; GeneMarkS-2+ 136602 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-14 23B 23B species Homo sapiens 1935 Streptococcus pneumoniae Streptococcus pneumoniae ERS021895 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-02-02 v1.2.4 2012-01-20T20:09:33.633 98.63 2047353 92.31 1313 2150 2024-02-06T09:02:43.000 2047374 136602 2047349 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 163 EBI 100 GCA_053203845.1 GCF_001084285.1-RS_2026_01_14 SLX Streptococcus pneumoniae GCF_001084285.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CLZJ00000000.1 2012-01-10T09:59:57Z GCF_001084285.1 haploid public SMRU2386-sc-2011-01-27-1062599 86.13 0.36 38 2015-07-28T08:12:49 GCA_053203845.1 812309 52 6983_8#82 SMRU2386-sc-2011-01-27-1062599 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028887 1313 GCA_001084285.1 Generic.1.0 86.13 SRA GCA_001084285.1 category_na live 2018-03-09T11:47:18Z SMRU2386 PRJEB2479 Annotation submitted by SC SC SC 37 2018-03-09T11:47:18Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLZJ01 2010-02-02 SMRU2386 6.10 2012-01-10T09:59:57Z Prokka current 37 SMRU2386-sc-2011-01-27-1062599 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLZJ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2386 species_match 98.76 SAMEA1029303 5 Streptococcus pneumoniae 92.64 Streptococcus pneumoniae 1313 PRJEB2480 5 current na 129105 type Streptococcus pneumoniae 2015-07-14 23B 23B species Homo sapiens 2007 Streptococcus pneumoniae Streptococcus pneumoniae ERS022430 SC 2010-07-30 v1.2.4 2012-01-20T20:14:19.860 98.63 2036903 92.64 1313 2050 2024-02-05T16:18:14.000 2036999 129105 2036897 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001138525.1 type nasopharynx 98.77 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CMCS00000000.1 2012-01-16T15:10:29Z GCA_001138525.1 haploid public SMRU2920-sc-2011-01-27-1063133 85.99 0.36 50 2015-07-28T08:13:01 GCA_053203845.1 807733 43 7004_8#88 SMRU2920-sc-2011-01-27-1063133 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029303 1313 GCF_001138525.1 Generic.1.0 85.99 SRA GCF_001138525.1 category_na live 2018-03-09T09:52:55Z SMRU2920 PRJEB2480 GCF_001138525.1-RS_2026_01_12 SC SC 48 2018-03-09T09:52:55Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMCS01 2010-07-30 SMRU2920 2012-01-16T15:10:29Z Prokka current 48 SMRU2920-sc-2011-01-27-1063133 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMCS01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2920 species_match 98.77 SAMEA1029303 5 Streptococcus pneumoniae 92.64 Streptococcus pneumoniae 1313 PRJEB2480 5 current na Best-placed reference protein set; GeneMarkS-2+ 129105 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-12 23B 23B species Homo sapiens 1946 Streptococcus pneumoniae Streptococcus pneumoniae ERS022430 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-07-30 v1.2.4 2012-01-20T20:14:19.860 98.63 2036903 92.64 1313 2151 2024-02-05T16:18:14.000 2036999 129105 2036897 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 159 EBI 100 GCA_053203845.1 GCF_001138525.1-RS_2026_01_12 SLX Streptococcus pneumoniae GCF_001138525.1 type nasopharynx 98.77 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CMCS00000000.1 2012-01-16T15:10:29Z GCF_001138525.1 haploid public SMRU2920-sc-2011-01-27-1063133 85.99 0.36 50 2015-07-28T08:13:01 GCA_053203845.1 807733 46 7004_8#88 SMRU2920-sc-2011-01-27-1063133 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029303 1313 GCA_001138525.1 Generic.1.0 85.99 SRA GCA_001138525.1 category_na live 2018-03-09T09:52:55Z SMRU2920 PRJEB2480 Annotation submitted by SC SC SC 48 2018-03-09T09:52:55Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMCS01 2010-07-30 SMRU2920 6.10 2012-01-16T15:10:29Z Prokka current 48 SMRU2920-sc-2011-01-27-1063133 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMCS01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2920 species_match 98.77 SAMEA1025601 6 Streptococcus pneumoniae 89.73 Streptococcus pneumoniae 1313 PRJEB2395 6 current na 118990 type Streptococcus pneumoniae 2015-07-28 23B 23B species Homo sapiens 2176 Streptococcus pneumoniae Streptococcus pneumoniae ERS020778 SC 2009-02-16 v1.2.4 2012-01-20T19:56:28.020 98.58 2129916 89.73 1313 2220 2024-02-06T09:03:54.000 2129971 118990 2129891 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001342675.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 21.5543 https://www.ncbi.nlm.nih.gov/nuccore/CGWV00000000.1 2011-11-15T09:28:16Z GCA_001342675.1 haploid public SMRU1268-sc-2011-01-27-1061481 87.09 0.46 44 2015-07-28T08:11:34 GCA_053203845.1 844006 44 6736_6#20 SMRU1268-sc-2011-01-27-1061481 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025601 1313 GCF_001342675.1 Generic.1.0 87.09 SRA GCF_001342675.1 category_na live 2018-03-09T12:04:15Z SMRU1268 PRJEB2395 GCF_001342675.1-RS_2026_02_02 SC SC 40 2018-03-09T12:04:15Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CGWV01 2009-02-16 SMRU1268 2011-11-15T09:28:16Z Prokka current 40 SMRU1268-sc-2011-01-27-1061481 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CGWV01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-28 SMRU1268 species_match 98.71 SAMEA1025601 6 Streptococcus pneumoniae 89.73 Streptococcus pneumoniae 1313 PRJEB2395 6 current na Best-placed reference protein set; GeneMarkS-2+ 118990 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-02 23B 23B species Homo sapiens 2063 Streptococcus pneumoniae Streptococcus pneumoniae ERS020778 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-02-16 v1.2.4 2012-01-20T19:56:28.020 98.58 2129916 89.73 1313 2292 2024-02-06T09:03:54.000 2129971 118990 2129891 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 182 EBI 100 GCA_053203845.1 GCF_001342675.1-RS_2026_02_02 SLX Streptococcus pneumoniae GCF_001342675.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 21.5543 https://www.ncbi.nlm.nih.gov/nuccore/CGWV00000000.1 2011-11-15T09:28:16Z GCF_001342675.1 haploid public SMRU1268-sc-2011-01-27-1061481 87.09 0.46 44 2015-07-28T08:11:34 GCA_053203845.1 844006 47 6736_6#20 SMRU1268-sc-2011-01-27-1061481 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025601 1313 GCA_001342675.1 Generic.1.0 87.09 SRA GCA_001342675.1 category_na live 2018-03-09T12:04:15Z SMRU1268 PRJEB2395 Annotation submitted by SC SC SC 40 2018-03-09T12:04:15Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CGWV01 2009-02-16 SMRU1268 6.10 2011-11-15T09:28:16Z Prokka current 40 SMRU1268-sc-2011-01-27-1061481 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CGWV01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-28 SMRU1268 species_match 98.71 SAMEA974627 5 Streptococcus pneumoniae 92.56 Streptococcus pneumoniae 1313 PRJEB2357 6 current na 143777 type Streptococcus pneumoniae 2015-07-28 23B 23B species Homo sapiens 2023 Streptococcus pneumoniae Streptococcus pneumoniae ERS019227 SC 2008-02-01 v1.2.4 2011-07-31T19:55:34.266 98.63 2042550 92.56 1313 2067 2024-02-06T09:04:01.000 2042606 118947 2042536 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001336415.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CFET00000000.1 2011-07-27T10:09:44Z GCA_001336415.1 haploid public SMRU69-sc-2011-01-27-1026494 86.15 0.36 38 2016-01-29T08:05:15 GCA_053203845.1 809845 44 6259_7#21 SMRU69-sc-2011-01-27-1026494 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974627 1313 GCF_001336415.1 Generic.1.0 86.15 SRA GCF_001336415.1 category_na live 2018-03-09T12:06:10Z SMRU69 PRJEB2357 GCF_001336415.1-RS_2026_01_16 SC SC 36 2018-03-09T12:06:10Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFET01 2008-02-01 23B 2011-07-27T10:09:44Z Prokka current 36 SMRU69-sc-2011-01-27-1026494 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFET01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-01 SMRU69 species_match 98.75 SAMEA974627 5 Streptococcus pneumoniae 92.56 Streptococcus pneumoniae 1313 PRJEB2357 6 current na Best-placed reference protein set; GeneMarkS-2+ 143777 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-16 23B 23B species Homo sapiens 1932 Streptococcus pneumoniae Streptococcus pneumoniae ERS019227 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-02-01 v1.2.4 2011-07-31T19:55:34.266 98.63 2042550 92.56 1313 2144 2024-02-06T09:04:01.000 2042606 118947 2042536 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 164 EBI 100 GCA_053203845.1 GCF_001336415.1-RS_2026_01_16 SLX Streptococcus pneumoniae GCF_001336415.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CFET00000000.1 2011-07-27T10:09:44Z GCF_001336415.1 haploid public SMRU69-sc-2011-01-27-1026494 86.15 0.36 38 2016-01-29T08:05:15 GCA_053203845.1 809845 48 6259_7#21 SMRU69-sc-2011-01-27-1026494 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974627 1313 GCA_001336415.1 Generic.1.0 86.15 SRA GCA_001336415.1 category_na live 2018-03-09T12:06:10Z SMRU69 PRJEB2357 Annotation submitted by SC SC SC 36 2018-03-09T12:06:10Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFET01 2008-02-01 SMRU69 6.10 2011-07-27T10:09:44Z Prokka current 36 SMRU69-sc-2011-01-27-1026494 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFET01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-01 SMRU69 species_match 98.75 SAMEA974646 6 Streptococcus pneumoniae 92.11 Streptococcus pneumoniae 1313 PRJEB2357 7 current na 112312 type Streptococcus pneumoniae 2015-07-24 23B 23B species Homo sapiens 2010 Streptococcus pneumoniae Streptococcus pneumoniae ERS019226 SC 2008-02-01 v1.2.4 2011-07-31T19:55:33.446 98.63 2037713 92.11 1313 2053 2024-02-06T09:04:01.000 2037766 112312 2037707 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001336575.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CHNM00000000.1 2011-07-27T10:09:44Z GCA_001336575.1 haploid public SMRU68-sc-2011-01-27-1026493 88.91 0.36 44 2016-01-29T08:05:15 GCA_001457635.1 807969 43 6259_7#20 SMRU68-sc-2011-01-27-1026493 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974646 1313 GCF_001336575.1 Generic.1.0 88.91 SRA GCF_001336575.1 category_na live 2018-03-09T12:06:10Z SMRU68 PRJEB2357 GCF_001336575.1-RS_2026_01_13 SC SC 42 2018-03-09T12:06:10Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHNM01 2008-02-01 23B 2011-07-27T10:09:44Z Prokka current 42 SMRU68-sc-2011-01-27-1026493 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHNM01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU68 species_match 98.72 SAMEA974646 6 Streptococcus pneumoniae 92.11 Streptococcus pneumoniae 1313 PRJEB2357 7 current na Best-placed reference protein set; GeneMarkS-2+ 112312 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-13 23B 23B species Homo sapiens 1940 Streptococcus pneumoniae Streptococcus pneumoniae ERS019226 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-02-01 v1.2.4 2011-07-31T19:55:33.446 98.63 2037713 92.11 1313 2147 2024-02-06T09:04:01.000 2037766 112312 2037707 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 162 EBI 100 GCA_001457635.1 GCF_001336575.1-RS_2026_01_13 SLX Streptococcus pneumoniae GCF_001336575.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CHNM00000000.1 2011-07-27T10:09:44Z GCF_001336575.1 haploid public SMRU68-sc-2011-01-27-1026493 88.91 0.36 44 2016-01-29T08:05:15 GCA_001457635.1 807969 45 6259_7#20 SMRU68-sc-2011-01-27-1026493 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974646 1313 GCA_001336575.1 Generic.1.0 88.91 SRA GCA_001336575.1 category_na live 2018-03-09T12:06:10Z SMRU68 PRJEB2357 Annotation submitted by SC SC SC 42 2018-03-09T12:06:10Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHNM01 2008-02-01 SMRU68 6.10 2011-07-27T10:09:44Z Prokka current 42 SMRU68-sc-2011-01-27-1026493 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHNM01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU68 species_match 98.72 SAMEA1463208 7 Streptococcus pneumoniae 92.53 Streptococcus pneumoniae 1313 PRJEB2632 7 current na 97610 type Streptococcus pneumoniae 2015-07-29 23B 23B species Homo sapiens 2016 Streptococcus pneumoniae Streptococcus pneumoniae ERS069920 SC 2007 v1.2.4 2012-06-06T09:06:31.040 98.99 2056393 92.53 1313 2046 2024-02-05T18:10:47.000 FOR95 2056393 97610 2056393 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001126425.2 type nasopharynx 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 46.3223 https://www.ncbi.nlm.nih.gov/nuccore/COBO00000000.2 2012-05-28T10:19:34Z GCA_001126425.2 haploid public BR1014-sc-2011-11-08T10:06:24Z-1298288 86.71 0.69 110 2015-09-10T08:20:45 FOR95 GCA_053203845.1 814754 30 7622_2#5 BR1014-sc-2011-11-08T10:06:24Z-1298288 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463208 1313 GCF_001126425.1 Generic.1.0 86.71 SRA GCF_001126425.1 category_na live 2018-03-09T09:54:35Z BR1014 PRJEB2632 GCF_001126425.1-RS_2026_01_18 SC SC 110 FOR95 2018-03-09T09:54:35Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COBO02 2007 BR1014 2012-05-28T10:19:34Z Velvet current 110 BR1014-sc-2011-11-08T10:06:24Z-1298288 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COBO02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 BR1014 species_match 98.76 SAMEA1463208 7 Streptococcus pneumoniae 92.53 Streptococcus pneumoniae 1313 PRJEB2632 7 current na Best-placed reference protein set; GeneMarkS-2+ 97610 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 23B 23B species Homo sapiens 1962 Streptococcus pneumoniae Streptococcus pneumoniae ERS069920 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:31.040 98.99 2056393 92.53 1313 2171 2024-02-05T18:10:47.000 FOR95 2056393 97610 2056393 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 160 EBI 100 GCA_053203845.1 GCF_001126425.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001126425.1 type nasopharynx 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 46.3223 https://www.ncbi.nlm.nih.gov/nuccore/COBO00000000.2 2012-05-28T10:19:34Z GCF_001126425.1 haploid public BR1014-sc-2011-11-08T10:06:24Z-1298288 86.71 0.69 110 2015-09-10T08:20:45 FOR95 GCA_053203845.1 814754 49 7622_2#5 BR1014-sc-2011-11-08T10:06:24Z-1298288 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463208 1313 GCA_001126425.2 Generic.1.0 86.71 SRA GCA_001126425.2 category_na live 2018-03-09T09:54:35Z BR1014 PRJEB2632 Annotation submitted by SC SC SC 110 FOR95 2018-03-09T09:54:35Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COBO02 2007 BR1014 6.10 2012-05-28T10:19:34Z Velvet current 110 BR1014-sc-2011-11-08T10:06:24Z-1298288 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COBO02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 BR1014 species_match 98.76 SAMEA1028875 6 Streptococcus pneumoniae 92.04 Streptococcus pneumoniae 1313 PRJEB2479 6 current na 96664 type Streptococcus pneumoniae 2015-07-14 23B 23B species Homo sapiens 2033 Streptococcus pneumoniae Streptococcus pneumoniae ERS021896 SC 2010-02-02 v1.2.4 2012-01-20T20:09:34.200 98.63 2049948 92.04 1313 2078 2024-02-05T16:28:39.000 2049948 96664 2049926 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001138685.1 type nasopharynx 98.77 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CLZL00000000.1 2012-01-10T09:59:59Z GCA_001138685.1 haploid public SMRU2387-sc-2011-01-27-1062600 85.98 0.36 48 2015-07-28T08:12:49 GCA_053203845.1 812577 45 6983_8#83 SMRU2387-sc-2011-01-27-1062600 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028875 1313 GCF_001138685.1 Generic.1.0 85.98 SRA GCF_001138685.1 category_na live 2018-03-09T09:53:03Z SMRU2387 PRJEB2479 GCF_001138685.1-RS_2026_01_21 SC SC 48 2018-03-09T09:53:03Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLZL01 2010-02-02 SMRU2387 2012-01-10T09:59:59Z Prokka current 48 SMRU2387-sc-2011-01-27-1062600 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLZL01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2387 species_match 98.77 SAMEA1028875 6 Streptococcus pneumoniae 92.04 Streptococcus pneumoniae 1313 PRJEB2479 6 current na Best-placed reference protein set; GeneMarkS-2+ 96664 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-21 23B 23B species Homo sapiens 1952 Streptococcus pneumoniae Streptococcus pneumoniae ERS021896 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-02-02 v1.2.4 2012-01-20T20:09:34.200 98.63 2049948 92.04 1313 2178 2024-02-05T16:28:39.000 2049948 96664 2049926 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 177 EBI 100 GCA_053203845.1 GCF_001138685.1-RS_2026_01_21 SLX Streptococcus pneumoniae GCF_001138685.1 type nasopharynx 98.77 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CLZL00000000.1 2012-01-10T09:59:59Z GCF_001138685.1 haploid public SMRU2387-sc-2011-01-27-1062600 85.98 0.36 48 2015-07-28T08:12:49 GCA_053203845.1 812577 49 6983_8#83 SMRU2387-sc-2011-01-27-1062600 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028875 1313 GCA_001138685.1 Generic.1.0 85.98 SRA GCA_001138685.1 category_na live 2018-03-09T09:53:03Z SMRU2387 PRJEB2479 Annotation submitted by SC SC SC 48 2018-03-09T09:53:03Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLZL01 2010-02-02 SMRU2387 6.10 2012-01-10T09:59:59Z Prokka current 48 SMRU2387-sc-2011-01-27-1062600 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLZL01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2387 species_match 98.77 SAMEA1025358 9 Streptococcus pneumoniae 91.89 Streptococcus pneumoniae 1313 PRJEB2395 9 current na 99094 type Streptococcus pneumoniae 2015-07-24 23B 23B species Homo sapiens 2085 Streptococcus pneumoniae Streptococcus pneumoniae ERS020826 SC 2009-03-05 v1.2.4 2012-01-20T19:56:57.516 97.99 2068086 91.89 1313 2128 2024-02-05T16:23:58.000 2068096 96089 2068067 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001341555.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 7.08661 https://www.ncbi.nlm.nih.gov/nuccore/CHSN00000000.1 2011-11-15T17:01:01Z GCA_001341555.1 haploid public SMRU1316-sc-2011-01-27-1061529 86.61 0.99 51 2015-07-28T08:11:36 GCA_053203845.1 819036 43 6736_8#20 SMRU1316-sc-2011-01-27-1061529 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025358 1313 GCF_001341555.1 Generic.1.0 86.61 SRA GCF_001341555.1 category_na live 2018-03-09T09:53:00Z SMRU1316 PRJEB2395 GCF_001341555.1-RS_2026_02_08 SC SC 50 2018-03-09T09:53:00Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHSN01 2009-03-05 SMRU1316 2011-11-15T17:01:01Z Prokka current 50 SMRU1316-sc-2011-01-27-1061529 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHSN01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU1316 species_match 98.71 SAMEA1025358 9 Streptococcus pneumoniae 91.89 Streptococcus pneumoniae 1313 PRJEB2395 9 current na Best-placed reference protein set; GeneMarkS-2+ 99094 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-08 23B 23B species Homo sapiens 1991 Streptococcus pneumoniae Streptococcus pneumoniae ERS020826 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-05 v1.2.4 2012-01-20T19:56:57.516 97.99 2068086 91.89 1313 2209 2024-02-05T16:23:58.000 2068096 96089 2068067 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 172 EBI 100 GCA_053203845.1 GCF_001341555.1-RS_2026_02_08 SLX Streptococcus pneumoniae GCF_001341555.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 7.08661 https://www.ncbi.nlm.nih.gov/nuccore/CHSN00000000.1 2011-11-15T17:01:01Z GCF_001341555.1 haploid public SMRU1316-sc-2011-01-27-1061529 86.61 0.99 51 2015-07-28T08:11:36 GCA_053203845.1 819036 46 6736_8#20 SMRU1316-sc-2011-01-27-1061529 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025358 1313 GCA_001341555.1 Generic.1.0 86.61 SRA GCA_001341555.1 category_na live 2018-03-09T09:53:00Z SMRU1316 PRJEB2395 Annotation submitted by SC SC SC 50 2018-03-09T09:53:00Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHSN01 2009-03-05 SMRU1316 6.10 2011-11-15T17:01:01Z Prokka current 50 SMRU1316-sc-2011-01-27-1061529 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHSN01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU1316 species_match 98.71 SAMEA1029052 7 Streptococcus pneumoniae 91.86 Streptococcus pneumoniae 1313 PRJEB2479 7 current na 88161 type Streptococcus pneumoniae 2015-07-14 23B 23B species Homo sapiens 2037 Streptococcus pneumoniae Streptococcus pneumoniae ERS022353 SC 2010-06-25 v1.2.4 2012-01-20T20:13:34.373 98.63 2049949 91.86 1313 2081 2024-02-05T16:33:56.000 2049971 88161 2049939 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001147645.1 type nasopharynx 98.77 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CMAZ00000000.1 2012-01-16T15:10:26Z GCA_001147645.1 haploid public SMRU2843-sc-2011-01-27-1063056 85.82 0.36 46 2015-07-28T08:12:57 GCA_053203845.1 812588 44 7004_6#35 SMRU2843-sc-2011-01-27-1063056 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029052 1313 GCF_001147645.1 Generic.1.0 85.82 SRA GCF_001147645.1 category_na live 2018-03-09T09:53:07Z SMRU2843 PRJEB2479 GCF_001147645.1-RS_2026_01_18 SC SC 44 2018-03-09T09:53:07Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMAZ01 2010-06-25 SMRU2843 2012-01-16T15:10:26Z Prokka current 44 SMRU2843-sc-2011-01-27-1063056 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMAZ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2843 species_match 98.77 SAMEA1029052 7 Streptococcus pneumoniae 91.86 Streptococcus pneumoniae 1313 PRJEB2479 7 current na Best-placed reference protein set; GeneMarkS-2+ 88161 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 23B 23B species Homo sapiens 1967 Streptococcus pneumoniae Streptococcus pneumoniae ERS022353 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-06-25 v1.2.4 2012-01-20T20:13:34.373 98.63 2049949 91.86 1313 2177 2024-02-05T16:33:56.000 2049971 88161 2049939 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 164 EBI 100 GCA_053203845.1 GCF_001147645.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001147645.1 type nasopharynx 98.77 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CMAZ00000000.1 2012-01-16T15:10:26Z GCF_001147645.1 haploid public SMRU2843-sc-2011-01-27-1063056 85.82 0.36 46 2015-07-28T08:12:57 GCA_053203845.1 812588 46 7004_6#35 SMRU2843-sc-2011-01-27-1063056 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029052 1313 GCA_001147645.1 Generic.1.0 85.82 SRA GCA_001147645.1 category_na live 2018-03-09T09:53:07Z SMRU2843 PRJEB2479 Annotation submitted by SC SC SC 44 2018-03-09T09:53:07Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMAZ01 2010-06-25 SMRU2843 6.10 2012-01-16T15:10:26Z Prokka current 44 SMRU2843-sc-2011-01-27-1063056 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMAZ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2843 species_match 98.77 SAMEA1029172 7 Streptococcus pneumoniae 90.54 Streptococcus pneumoniae 1313 PRJEB2479 7 current na 85383 type Streptococcus pneumoniae 2015-07-14 23B 23B species Homo sapiens 2088 Streptococcus pneumoniae Streptococcus pneumoniae ERS022354 SC 2010-06-25 v1.2.4 2012-01-20T20:13:34.936 98.63 2081003 90.54 1313 2132 2024-02-06T09:02:25.000 2081015 85383 2080996 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001120585.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CMBA00000000.1 2012-01-16T15:10:27Z GCA_001120585.1 haploid public SMRU2844-sc-2011-01-27-1063057 85.86 0.52 52 2015-07-28T08:12:57 GCA_053203845.1 825117 44 7004_6#36 SMRU2844-sc-2011-01-27-1063057 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029172 1313 GCF_001120585.1 Generic.1.0 85.86 SRA GCF_001120585.1 category_na live 2018-03-09T11:43:55Z SMRU2844 PRJEB2479 GCF_001120585.1-RS_2026_01_18 SC SC 51 2018-03-09T11:43:55Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMBA01 2010-06-25 SMRU2844 2012-01-16T15:10:27Z Prokka current 51 SMRU2844-sc-2011-01-27-1063057 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMBA01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2844 species_match 98.76 SAMEA1029172 7 Streptococcus pneumoniae 90.54 Streptococcus pneumoniae 1313 PRJEB2479 7 current na Best-placed reference protein set; GeneMarkS-2+ 85383 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 23B 23B species Homo sapiens 2009 Streptococcus pneumoniae Streptococcus pneumoniae ERS022354 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-06-25 v1.2.4 2012-01-20T20:13:34.936 98.63 2081003 90.54 1313 2222 2024-02-06T09:02:25.000 2081015 85383 2080996 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 167 EBI 100 GCA_053203845.1 GCF_001120585.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001120585.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/CMBA00000000.1 2012-01-16T15:10:27Z GCF_001120585.1 haploid public SMRU2844-sc-2011-01-27-1063057 85.86 0.52 52 2015-07-28T08:12:57 GCA_053203845.1 825117 46 7004_6#36 SMRU2844-sc-2011-01-27-1063057 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029172 1313 GCA_001120585.1 Generic.1.0 85.86 SRA GCA_001120585.1 category_na live 2018-03-09T11:43:55Z SMRU2844 PRJEB2479 Annotation submitted by SC SC SC 51 2018-03-09T11:43:55Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMBA01 2010-06-25 SMRU2844 6.10 2012-01-16T15:10:27Z Prokka current 51 SMRU2844-sc-2011-01-27-1063057 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMBA01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2844 species_match 98.76 SAMEA2383116 3 Streptococcus pneumoniae 89.21 Streptococcus pneumoniae 1313 PRJEB4909 5 current na 302948 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2082 Streptococcus pneumoniae Streptococcus pneumoniae ERS409441 SC 2006/2012 v1.2.4 2014-07-17T08:09:33.480 98.44 2075195 89.21 1313 2129 2024-02-06T06:52:50.000 2077185 148849 2075192 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900033565.1 type blood 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 17.0028 https://www.ncbi.nlm.nih.gov/nuccore/FEII00000000.1 2014-07-16T11:40:11Z GCA_900033565.1 haploid public 2102095_II-sc-1870367 87.7 0.31 31 2018-03-10T19:06:27 GCA_001457635.1 823434 47 12754_3#1 2102095_II-sc-1870367 Netherlands 12754_3#1 SAMEA2383116 1313 GCF_900033565.1 Generic.1.0 87.7 SRA GCF_900033565.1 category_na live 2018-03-09T10:42:36Z 2842STDY5753662 PRJEB4909 GCF_900033565.1-RS_2025_09_28 SC SC 24 1870367 2018-03-09T10:42:36Z 2014-07-16T00:00:00.000 2102095_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEII01 2006/2012 2842STDY5753662 2014-07-16T11:40:11Z Prokka current 24 2102095_II-sc-1870367 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEII01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753662 species_match 98.71 SAMEA2383116 3 Streptococcus pneumoniae 89.21 Streptococcus pneumoniae 1313 PRJEB4909 5 current na Best-placed reference protein set; GeneMarkS-2+ 302948 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1978 Streptococcus pneumoniae Streptococcus pneumoniae ERS409441 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:33.480 98.44 2075195 89.21 1313 2198 2024-02-06T06:52:50.000 2077185 148849 2075192 blood Homo sapiens Streptococcus pneumoniae Disease 167 EBI 100 GCA_001457635.1 GCF_900033565.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900033565.1 type blood 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 17.0028 https://www.ncbi.nlm.nih.gov/nuccore/FEII00000000.1 2014-07-16T11:40:11Z GCF_900033565.1 haploid public 2102095_II-sc-1870367 87.7 0.31 31 2018-03-10T19:06:27 GCA_001457635.1 823434 53 12754_3#1 2102095_II-sc-1870367 Netherlands 12754_3#1 SAMEA2383116 1313 GCA_900033565.1 Generic.1.0 87.7 SRA GCA_900033565.1 category_na live 2018-03-09T10:42:36Z 2842STDY5753662 PRJEB4909 Annotation submitted by SC SC SC 24 1870367 2018-03-09T10:42:36Z 2014-07-16T00:00:00.000 2102095_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEII01 2006/2012 2842STDY5753662 6.10 2014-07-16T11:40:11Z Prokka current 24 2102095_II-sc-1870367 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEII01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753662 species_match 98.71 SAMEA2521681 3 Streptococcus pneumoniae 92.78 Streptococcus pneumoniae 1313 PRJEB3084 5 current na 196712 type Streptococcus pneumoniae 2019-05-13 23B 23B species Homo sapiens 2127 Streptococcus pneumoniae Streptococcus pneumoniae ERS455221 SC 2012 v1.2.4 2014-09-17T09:08:17.096 98.83 2089432 92.78 1313 2172 Streptococcus pneumoniae 2024-02-06T15:55:10.000 2091329 124650 2089430 blood Homo sapiens Streptococcus pneumoniae IPD ST33 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900055425.2 type blood 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 35.0426 https://www.ncbi.nlm.nih.gov/nuccore/FHTO00000000.2 2014-09-16T09:22:31Z GCA_900055425.2 haploid public 2013208721-sc-1946974 88.35 0.31 29 2015-08-10T19:57:12 GCA_053203845.1 829468 45 13414_3#35 2013208721-sc-1946974 USA 13414_3#35 SAMEA2521681 1313 GCF_900055425.2 Generic.1.0 88.35 SRA GCF_900055425.2 category_na live 2019-04-18T15:39:24Z GPSC7 PRJEB3084 GCF_900055425.2-RS_2025_12_31 SC SC 22 1946974 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2013208721 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHTO02 2012 2245STDY5819648 2014-09-16T09:22:31Z Prokka current 22 2013208721-sc-1946974 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHTO02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC7 species_match 98.71 SAMEA2521681 3 Streptococcus pneumoniae 92.78 Streptococcus pneumoniae 1313 PRJEB3084 5 current na Best-placed reference protein set; GeneMarkS-2+ 196712 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-31 23B 23B species Homo sapiens 2001 Streptococcus pneumoniae Streptococcus pneumoniae ERS455221 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:17.096 98.83 2089432 92.78 1313 2221 Streptococcus pneumoniae 2024-02-06T15:55:10.000 2091329 124650 2089430 blood Homo sapiens Streptococcus pneumoniae IPD 168 ST33 EBI 100 GCA_053203845.1 GCF_900055425.2-RS_2025_12_31 SLX Streptococcus pneumoniae GCF_900055425.2 type blood 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 35.0426 https://www.ncbi.nlm.nih.gov/nuccore/FHTO00000000.2 2014-09-16T09:22:31Z GCF_900055425.2 haploid public 2013208721-sc-1946974 88.35 0.31 29 2015-08-10T19:57:12 GCA_053203845.1 829468 52 13414_3#35 2013208721-sc-1946974 USA 13414_3#35 SAMEA2521681 1313 GCA_900055425.2 Generic.1.0 88.35 SRA GCA_900055425.2 category_na live 2019-04-18T15:39:24Z GPSC7 PRJEB3084 Annotation submitted by SC SC SC 22 1946974 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2013208721 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHTO02 2012 GPSC7 substr. ST33 6.10 2014-09-16T09:22:31Z Prokka current 22 2013208721-sc-1946974 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHTO02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC7 species_match 98.71 SAMEA2521656 4 Streptococcus pneumoniae 88.75 Streptococcus pneumoniae 1313 PRJEB3084 6 current na 182336 type Streptococcus pneumoniae 2019-05-13 23B 23B species Homo sapiens 2062 Streptococcus pneumoniae Streptococcus pneumoniae ERS455196 SC 2012 v1.2.4 2014-09-17T09:08:16.113 98.75 2072070 88.75 1313 2111 Streptococcus pneumoniae 2024-02-06T15:55:10.000 2073824 109292 2072069 blood Homo sapiens Streptococcus pneumoniae IPD ST10149 EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900051845.2 type blood 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae 29.4027 https://www.ncbi.nlm.nih.gov/nuccore/FHTD00000000.2 2014-09-16T09:22:31Z GCA_900051845.2 haploid public 2012219977-sc-1946949 87.87 0.31 34 2015-08-10T19:57:11 GCA_001679515.1 821248 49 13414_3#10 2012219977-sc-1946949 USA 13414_3#10 SAMEA2521656 1313 GCF_900051845.2 Generic.1.0 87.87 SRA GCF_900051845.2 category_na live 2019-04-18T15:39:24Z GPSC5 PRJEB3084 GCF_900051845.2-RS_2025_12_30 SC SC 25 1946949 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2012219977 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHTD02 2012 2245STDY5819623 2014-09-16T09:22:31Z Prokka current 25 2012219977-sc-1946949 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHTD02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC5 species_match 98.72 SAMEA2521656 4 Streptococcus pneumoniae 88.75 Streptococcus pneumoniae 1313 PRJEB3084 6 current na Best-placed reference protein set; GeneMarkS-2+ 182336 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-30 23B 23B species Homo sapiens 1965 Streptococcus pneumoniae Streptococcus pneumoniae ERS455196 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:16.113 98.75 2072070 88.75 1313 2184 Streptococcus pneumoniae 2024-02-06T15:55:10.000 2073824 109292 2072069 blood Homo sapiens Streptococcus pneumoniae IPD 164 ST10149 EBI 100 GCA_001679515.1 GCF_900051845.2-RS_2025_12_30 SLX Streptococcus pneumoniae GCF_900051845.2 type blood 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae 29.4027 https://www.ncbi.nlm.nih.gov/nuccore/FHTD00000000.2 2014-09-16T09:22:31Z GCF_900051845.2 haploid public 2012219977-sc-1946949 87.87 0.31 34 2015-08-10T19:57:11 GCA_001679515.1 821248 55 13414_3#10 2012219977-sc-1946949 USA 13414_3#10 SAMEA2521656 1313 GCA_900051845.2 Generic.1.0 87.87 SRA GCA_900051845.2 category_na live 2019-04-18T15:39:24Z GPSC5 PRJEB3084 Annotation submitted by SC SC SC 25 1946949 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2012219977 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHTD02 2012 GPSC5 substr. ST10149 6.10 2014-09-16T09:22:31Z Prokka current 25 2012219977-sc-1946949 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHTD02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC5 species_match 98.72 SAMEA2796722 6 Streptococcus pneumoniae 89.73 Streptococcus pneumoniae 1313 PRJEB3084 8 current na 138190 type Streptococcus pneumoniae 2019-05-23 23B 23B species Homo sapiens 2181 Streptococcus pneumoniae Streptococcus pneumoniae ERS558333 SC 2009 v1.2.4 2015-01-30T08:09:21.360 98.91 2155485 89.73 1313 2223 Streptococcus pneumoniae 2024-02-06T15:55:30.000 2159261 103740 2155483 blood Homo sapiens Streptococcus pneumoniae Bacteremia ST1373 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900057415.2 type blood 98.61 ERC000011 OK 39.5 Streptococcus pneumoniae 41.0153 https://www.ncbi.nlm.nih.gov/nuccore/FHVM00000000.2 2015-01-27T09:20:52Z GCA_900057415.2 haploid public GPS_US_2009208544_R1-sc-2138706 88.14 0.31 44 2015-08-11T22:00:59 GCA_053203845.1 853576 42 14673_4#29 GPS_US_2009208544_R1-sc-2138706 USA 14673_4#29 SAMEA2796722 1313 GCF_900057415.2 Generic.1.0 88.14 SRA GCF_900057415.2 category_na live 2019-04-18T15:39:29Z GPSC5 PRJEB3084 GCF_900057415.2-RS_2026_01_04 SC SC 30 2138706 2019-04-18T15:39:29Z 2015-01-27T00:00:00.000 2009208544 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHVM02 2009 2245STDY5982748 2015-01-27T09:20:52Z Prokka current 30 GPS_US_2009208544_R1-sc-2138706 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHVM02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-23 GPSC5 species_match 98.61 SAMEA2796722 6 Streptococcus pneumoniae 89.73 Streptococcus pneumoniae 1313 PRJEB3084 8 current na Best-placed reference protein set; GeneMarkS-2+ 138190 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-04 23B 23B species Homo sapiens 2072 Streptococcus pneumoniae Streptococcus pneumoniae ERS558333 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2015-01-30T08:09:21.360 98.91 2155485 89.73 1313 2295 Streptococcus pneumoniae 2024-02-06T15:55:30.000 2159261 103740 2155483 blood Homo sapiens Streptococcus pneumoniae Bacteremia 175 ST1373 EBI 100 GCA_053203845.1 GCF_900057415.2-RS_2026_01_04 SLX Streptococcus pneumoniae GCF_900057415.2 type blood 98.61 ERC000011 OK 39.5 Streptococcus pneumoniae 41.0153 https://www.ncbi.nlm.nih.gov/nuccore/FHVM00000000.2 2015-01-27T09:20:52Z GCF_900057415.2 haploid public GPS_US_2009208544_R1-sc-2138706 88.14 0.31 44 2015-08-11T22:00:59 GCA_053203845.1 853576 48 14673_4#29 GPS_US_2009208544_R1-sc-2138706 USA 14673_4#29 SAMEA2796722 1313 GCA_900057415.2 Generic.1.0 88.14 SRA GCA_900057415.2 category_na live 2019-04-18T15:39:29Z GPSC5 PRJEB3084 Annotation submitted by SC SC SC 30 2138706 2019-04-18T15:39:29Z 2015-01-27T00:00:00.000 2009208544 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHVM02 2009 GPSC5 substr. ST1373 6.10 2015-01-27T09:20:52Z Prokka current 30 GPS_US_2009208544_R1-sc-2138706 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHVM02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-23 GPSC5 species_match 98.61 SAMEA2796733 6 Streptococcus pneumoniae 90.88 Streptococcus pneumoniae 1313 PRJEB3084 8 current na 123307 type Streptococcus pneumoniae 2019-05-13 23B 23B species Homo sapiens 2003 Streptococcus pneumoniae Streptococcus pneumoniae ERS558344 SC 2009 v1.2.4 2015-01-30T08:09:21.890 98.68 2056305 90.88 1313 2049 Streptococcus pneumoniae 2024-02-06T15:55:30.000 2057014 102318 2056296 blood Homo sapiens Streptococcus pneumoniae Bacteremia ST63 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900055725.2 type blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 25.3377 https://www.ncbi.nlm.nih.gov/nuccore/FHVW00000000.2 2015-01-27T09:20:52Z GCA_900055725.2 haploid public GPS_US_2009212860_R1-sc-2138717 85.16 0.31 37 2015-08-11T22:01:00 GCA_053203845.1 813166 46 14673_4#40 GPS_US_2009212860_R1-sc-2138717 USA 14673_4#40 SAMEA2796733 1313 GCF_900055725.2 Generic.1.0 85.16 SRA GCF_900055725.2 category_na live 2019-04-18T15:39:29Z GPSC9 PRJEB3084 GCF_900055725.2-RS_2026_01_21 SC SC 33 2138717 2019-04-18T15:39:29Z 2015-01-27T00:00:00.000 2009212860 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHVW02 2009 2245STDY5982759 2015-01-27T09:20:52Z Prokka current 33 GPS_US_2009212860_R1-sc-2138717 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHVW02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC9 species_match 98.8 SAMEA2796733 6 Streptococcus pneumoniae 90.88 Streptococcus pneumoniae 1313 PRJEB3084 8 current na Best-placed reference protein set; GeneMarkS-2+ 123307 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-21 23B 23B species Homo sapiens 1909 Streptococcus pneumoniae Streptococcus pneumoniae ERS558344 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2015-01-30T08:09:21.890 98.68 2056305 90.88 1313 2130 Streptococcus pneumoniae 2024-02-06T15:55:30.000 2057014 102318 2056296 blood Homo sapiens Streptococcus pneumoniae Bacteremia 170 ST63 EBI 100 GCA_053203845.1 GCF_900055725.2-RS_2026_01_21 SLX Streptococcus pneumoniae GCF_900055725.2 type blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 25.3377 https://www.ncbi.nlm.nih.gov/nuccore/FHVW00000000.2 2015-01-27T09:20:52Z GCF_900055725.2 haploid public GPS_US_2009212860_R1-sc-2138717 85.16 0.31 37 2015-08-11T22:01:00 GCA_053203845.1 813166 51 14673_4#40 GPS_US_2009212860_R1-sc-2138717 USA 14673_4#40 SAMEA2796733 1313 GCA_900055725.2 Generic.1.0 85.16 SRA GCA_900055725.2 category_na live 2019-04-18T15:39:29Z GPSC9 PRJEB3084 Annotation submitted by SC SC SC 33 2138717 2019-04-18T15:39:29Z 2015-01-27T00:00:00.000 2009212860 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHVW02 2009 GPSC9 substr. ST63 6.10 2015-01-27T09:20:52Z Prokka current 33 GPS_US_2009212860_R1-sc-2138717 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHVW02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC9 species_match 98.8 SAMEA2521501 6 Streptococcus pneumoniae 92.52 Streptococcus pneumoniae 1313 PRJEB3084 8 current na 126160 type Streptococcus pneumoniae 2019-05-15 23B 23B species Homo sapiens 2069 Streptococcus pneumoniae Streptococcus pneumoniae ERS455041 SC 2012 v1.2.4 2014-09-17T09:08:11.263 98.84 2084790 92.52 1313 2116 Streptococcus pneumoniae 2024-02-06T15:55:04.000 2087430 90563 2084790 blood Homo sapiens Streptococcus pneumoniae IPD ST162 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900062175.2 type blood 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FHOW00000000.2 2014-09-16T09:22:32Z GCA_900062175.2 haploid public 2013205806-sc-1946795 87.9 0.71 43 2018-03-10T19:14:14 GCA_053203845.1 825349 47 13414_1#48 2013205806-sc-1946795 USA 13414_1#48 SAMEA2521501 1313 GCF_900062175.2 Generic.1.0 87.9 SRA GCF_900062175.2 category_na live 2019-04-18T15:39:22Z GPSC6 PRJEB3084 GCF_900062175.2-RS_2026_01_19 SC SC 32 1946795 2019-04-18T15:39:22Z 2014-09-16T00:00:00.000 2013205806 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHOW02 2012 2245STDY5819469 2014-09-16T09:22:32Z Prokka current 32 2013205806-sc-1946795 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHOW02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-15 GPSC6 species_match 98.77 SAMEA2521501 6 Streptococcus pneumoniae 92.52 Streptococcus pneumoniae 1313 PRJEB3084 8 current na Best-placed reference protein set; GeneMarkS-2+ 126160 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 23B 23B species Homo sapiens 1962 Streptococcus pneumoniae Streptococcus pneumoniae ERS455041 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:11.263 98.84 2084790 92.52 1313 2183 Streptococcus pneumoniae 2024-02-06T15:55:04.000 2087430 90563 2084790 blood Homo sapiens Streptococcus pneumoniae IPD 167 ST162 EBI 100 GCA_053203845.1 GCF_900062175.2-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_900062175.2 type blood 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FHOW00000000.2 2014-09-16T09:22:32Z GCF_900062175.2 haploid public 2013205806-sc-1946795 87.9 0.71 43 2018-03-10T19:14:14 GCA_053203845.1 825349 54 13414_1#48 2013205806-sc-1946795 USA 13414_1#48 SAMEA2521501 1313 GCA_900062175.2 Generic.1.0 87.9 SRA GCA_900062175.2 category_na live 2019-04-18T15:39:22Z GPSC6 PRJEB3084 Annotation submitted by SC SC SC 32 1946795 2019-04-18T15:39:22Z 2014-09-16T00:00:00.000 2013205806 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHOW02 2012 GPSC6 substr. ST162 6.10 2014-09-16T09:22:32Z Prokka current 32 2013205806-sc-1946795 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHOW02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-15 GPSC6 species_match 98.77 SAMEA1029164 8 Streptococcus pneumoniae 83.59 Streptococcus pneumoniae 1313 PRJEB2479 8 current na 80319 type Streptococcus pneumoniae 2015-07-13 23F 23F species Homo sapiens 2275 Streptococcus pneumoniae Streptococcus pneumoniae ERS021944 SC 2010-02-17 v1.2.4 2012-01-20T20:09:58.750 99.11 2276629 83.59 1313 2316 2024-02-05T16:16:59.000 2276660 80319 2276608 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001171385.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 61.1485 https://www.ncbi.nlm.nih.gov/nuccore/CLOF00000000.1 2012-01-05T09:56:35Z GCA_001171385.1 haploid public SMRU2434-sc-2011-01-27-1062647 86.72 8.35 49 2015-07-28T08:12:33 GCA_053203845.1 901389 41 6949_2#10 SMRU2434-sc-2011-01-27-1062647 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029164 1313 GCF_001171385.1 Generic.1.0 86.72 SRA GCF_001171385.1 category_na live 2018-03-09T09:52:54Z SMRU2434 PRJEB2479 GCF_001171385.1-RS_2026_02_07 SC SC 48 2018-03-09T09:52:54Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLOF01 2010-02-17 SMRU2434 2012-01-05T09:56:35Z Prokka current 48 SMRU2434-sc-2011-01-27-1062647 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLOF01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2434 species_match 98.72 SAMEA1029164 8 Streptococcus pneumoniae 83.59 Streptococcus pneumoniae 1313 PRJEB2479 8 current na Best-placed reference protein set; GeneMarkS-2+ 80319 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-07 23F 23F species Homo sapiens 2190 Streptococcus pneumoniae Streptococcus pneumoniae ERS021944 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-02-17 v1.2.4 2012-01-20T20:09:58.750 99.11 2276629 83.59 1313 2420 2024-02-05T16:16:59.000 2276660 80319 2276608 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 187 EBI 100 GCA_053203845.1 GCF_001171385.1-RS_2026_02_07 SLX Streptococcus pneumoniae GCF_001171385.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 61.1485 https://www.ncbi.nlm.nih.gov/nuccore/CLOF00000000.1 2012-01-05T09:56:35Z GCF_001171385.1 haploid public SMRU2434-sc-2011-01-27-1062647 86.72 8.35 49 2015-07-28T08:12:33 GCA_053203845.1 901389 43 6949_2#10 SMRU2434-sc-2011-01-27-1062647 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029164 1313 GCA_001171385.1 Generic.1.0 86.72 SRA GCA_001171385.1 category_na live 2018-03-09T09:52:54Z SMRU2434 PRJEB2479 Annotation submitted by SC SC SC 48 2018-03-09T09:52:54Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLOF01 2010-02-17 SMRU2434 6.10 2012-01-05T09:56:35Z Prokka current 48 SMRU2434-sc-2011-01-27-1062647 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLOF01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2434 species_match 98.72 SAMEA2238778 5 Streptococcus pneumoniae 88.56 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 184797 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2080 Streptococcus pneumoniae Streptococcus pneumoniae ERS367590 SC 2006/2012 v1.2.4 2014-05-07T08:34:56.956 98.44 2075617 88.56 1313 2128 2024-02-06T05:04:29.000 2078552 79607 2075615 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900023615.1 type CSF 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 17.0028 https://www.ncbi.nlm.nih.gov/nuccore/FCQF00000000.1 2014-03-18T09:35:29Z GCA_900023615.1 haploid public 2102095-sc-2013-11-05T12:02:17Z-1750141 87.84 0.31 34 2015-08-10T19:24:25 GCA_001679515.1 823681 48 11893_1#21 2102095-sc-2013-11-05T12:02:17Z-1750141 Netherlands 11893_1#21 SAMEA2238778 1313 GCF_900023615.1 Generic.1.0 87.84 SRA GCF_900023615.1 category_na live 2018-03-09T10:27:42Z 2842STDY5644152 PRJEB4909 GCF_900023615.1-RS_2026_01_11 SC SC 23 1750141 2018-03-09T10:27:42Z 2014-03-18T00:00:00.000 2102095 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCQF01 2006/2012 2842STDY5644152 2014-03-18T09:35:29Z Prokka current 23 2102095-sc-2013-11-05T12:02:17Z-1750141 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCQF01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644152 species_match 98.73 SAMEA2238778 5 Streptococcus pneumoniae 88.56 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 184797 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1971 Streptococcus pneumoniae Streptococcus pneumoniae ERS367590 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:56.956 98.44 2075617 88.56 1313 2190 2024-02-06T05:04:29.000 2078552 79607 2075615 CSF Homo sapiens Streptococcus pneumoniae Disease 165 EBI 100 GCA_001679515.1 GCF_900023615.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900023615.1 type CSF 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 17.0028 https://www.ncbi.nlm.nih.gov/nuccore/FCQF00000000.1 2014-03-18T09:35:29Z GCF_900023615.1 haploid public 2102095-sc-2013-11-05T12:02:17Z-1750141 87.84 0.31 34 2015-08-10T19:24:25 GCA_001679515.1 823681 54 11893_1#21 2102095-sc-2013-11-05T12:02:17Z-1750141 Netherlands 11893_1#21 SAMEA2238778 1313 GCA_900023615.1 Generic.1.0 87.84 SRA GCA_900023615.1 category_na live 2018-03-09T10:27:42Z 2842STDY5644152 PRJEB4909 Annotation submitted by SC SC SC 23 1750141 2018-03-09T10:27:42Z 2014-03-18T00:00:00.000 2102095 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCQF01 2006/2012 2842STDY5644152 6.10 2014-03-18T09:35:29Z Prokka current 23 2102095-sc-2013-11-05T12:02:17Z-1750141 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCQF01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644152 species_match 98.73 SAMEA2238845 4 Streptococcus pneumoniae 87.23 Streptococcus pneumoniae 1313 PRJEB4909 9 current na 174813 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2139 Streptococcus pneumoniae Streptococcus pneumoniae ERS367657 SC 2006/2012 v1.2.4 2014-05-07T08:35:01.120 98.8 2125560 87.23 1313 2186 2024-02-06T05:06:15.000 2128400 78205 2125558 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900032205.1 type CSF 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 33.0837 https://www.ncbi.nlm.nih.gov/nuccore/FCUO00000000.1 2014-03-18T09:35:29Z GCA_900032205.1 haploid public 2104279-sc-2013-11-05T12:03:22Z-1750208 87.84 0.31 58 2015-08-10T19:24:28 GCA_001457635.1 843035 47 11893_1#86 2104279-sc-2013-11-05T12:03:22Z-1750208 Netherlands 11893_1#86 SAMEA2238845 1313 GCF_900032205.1 Generic.1.0 87.84 SRA GCF_900032205.1 category_na live 2018-03-09T10:27:57Z 2842STDY5644219 PRJEB4909 GCF_900032205.1-RS_2025_09_21 SC SC 47 1750208 2018-03-09T10:27:57Z 2014-03-18T00:00:00.000 2104279 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUO01 2006/2012 2842STDY5644219 2014-03-18T09:35:29Z Prokka current 47 2104279-sc-2013-11-05T12:03:22Z-1750208 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUO01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644219 species_match 98.7 SAMEA2238845 4 Streptococcus pneumoniae 87.23 Streptococcus pneumoniae 1313 PRJEB4909 9 current na Best-placed reference protein set; GeneMarkS-2+ 174813 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 2042 Streptococcus pneumoniae Streptococcus pneumoniae ERS367657 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:01.120 98.8 2125560 87.23 1313 2274 2024-02-06T05:06:15.000 2128400 78205 2125558 CSF Homo sapiens Streptococcus pneumoniae Disease 180 EBI 100 GCA_001457635.1 GCF_900032205.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900032205.1 type CSF 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 33.0837 https://www.ncbi.nlm.nih.gov/nuccore/FCUO00000000.1 2014-03-18T09:35:29Z GCF_900032205.1 haploid public 2104279-sc-2013-11-05T12:03:22Z-1750208 87.84 0.31 58 2015-08-10T19:24:28 GCA_001457635.1 843035 52 11893_1#86 2104279-sc-2013-11-05T12:03:22Z-1750208 Netherlands 11893_1#86 SAMEA2238845 1313 GCA_900032205.1 Generic.1.0 87.84 SRA GCA_900032205.1 category_na live 2018-03-09T10:27:57Z 2842STDY5644219 PRJEB4909 Annotation submitted by SC SC SC 47 1750208 2018-03-09T10:27:57Z 2014-03-18T00:00:00.000 2104279 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUO01 2006/2012 2842STDY5644219 6.10 2014-03-18T09:35:29Z Prokka current 47 2104279-sc-2013-11-05T12:03:22Z-1750208 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUO01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644219 species_match 98.7 SAMEA2796709 5 Streptococcus pneumoniae 91.0 Streptococcus pneumoniae 1313 PRJEB3084 8 current na 145112 type Streptococcus pneumoniae 2019-05-21 23B 23B species Homo sapiens 2129 Streptococcus pneumoniae Streptococcus pneumoniae ERS558320 SC 2009 v1.2.4 2015-01-30T08:09:20.720 98.91 2125063 91.0 1313 2175 Streptococcus pneumoniae 2024-02-06T15:55:29.000 2130026 68768 2125062 blood Homo sapiens Streptococcus pneumoniae Otitis ST1373 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900060065.2 type blood 98.6 ERC000011 OK 39.5 Streptococcus pneumoniae 41.0153 https://www.ncbi.nlm.nih.gov/nuccore/FHUY00000000.2 2015-01-27T09:20:52Z GCA_900060065.2 haploid public GPS_US_2009216705_R1-sc-2138693 88.13 0.31 51 2015-08-11T22:00:58 GCA_053203845.1 841844 46 14673_4#16 GPS_US_2009216705_R1-sc-2138693 USA 14673_4#16 SAMEA2796709 1313 GCF_900060065.2 Generic.1.0 88.13 SRA GCF_900060065.2 category_na live 2019-04-18T15:39:29Z GPSC5 PRJEB3084 GCF_900060065.2-RS_2026_01_19 SC SC 32 2138693 2019-04-18T15:39:29Z 2015-01-27T00:00:00.000 2009216705 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHUY02 2009 2245STDY5982735 2015-01-27T09:20:52Z Prokka current 32 GPS_US_2009216705_R1-sc-2138693 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHUY02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-21 GPSC5 species_match 98.6 SAMEA2796709 5 Streptococcus pneumoniae 91.0 Streptococcus pneumoniae 1313 PRJEB3084 8 current na Best-placed reference protein set; GeneMarkS-2+ 145112 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 23B 23B species Homo sapiens 2038 Streptococcus pneumoniae Streptococcus pneumoniae ERS558320 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2015-01-30T08:09:20.720 98.91 2125063 91.0 1313 2260 Streptococcus pneumoniae 2024-02-06T15:55:29.000 2130026 68768 2125062 blood Homo sapiens Streptococcus pneumoniae Otitis 170 ST1373 EBI 100 GCA_053203845.1 GCF_900060065.2-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_900060065.2 type blood 98.6 ERC000011 OK 39.5 Streptococcus pneumoniae 41.0153 https://www.ncbi.nlm.nih.gov/nuccore/FHUY00000000.2 2015-01-27T09:20:52Z GCF_900060065.2 haploid public GPS_US_2009216705_R1-sc-2138693 88.13 0.31 51 2015-08-11T22:00:58 GCA_053203845.1 841844 52 14673_4#16 GPS_US_2009216705_R1-sc-2138693 USA 14673_4#16 SAMEA2796709 1313 GCA_900060065.2 Generic.1.0 88.13 SRA GCA_900060065.2 category_na live 2019-04-18T15:39:29Z GPSC5 PRJEB3084 Annotation submitted by SC SC SC 32 2138693 2019-04-18T15:39:29Z 2015-01-27T00:00:00.000 2009216705 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHUY02 2009 GPSC5 substr. ST1373 6.10 2015-01-27T09:20:52Z Prokka current 32 GPS_US_2009216705_R1-sc-2138693 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHUY02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-21 GPSC5 species_match 98.6 SAMEA1025202 7 Streptococcus pneumoniae 91.64 Streptococcus pneumoniae 1313 PRJEB2395 8 current na 96350 type Streptococcus pneumoniae 2015-07-17 23F 23F species Homo sapiens 2049 Streptococcus pneumoniae Streptococcus pneumoniae ERS021019 SC 2009-05-07 v1.2.4 2012-01-20T19:59:05.900 99.31 2062486 91.64 1313 2097 2024-02-06T09:04:00.000 2062534 96172 2062472 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001118105.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRJM00000000.1 2011-11-15T09:28:19Z GCA_001118105.1 haploid public SMRU1509-sc-2011-01-27-1061722 86.13 1.56 52 2015-07-28T08:11:43 GCA_053203845.1 816331 48 6753_2#20 SMRU1509-sc-2011-01-27-1061722 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025202 1313 GCF_001118105.1 Generic.1.0 86.13 SRA GCF_001118105.1 category_na live 2018-03-09T12:05:54Z SMRU1509 PRJEB2395 GCF_001118105.1-RS_2026_01_18 SC SC 49 2018-03-09T12:05:54Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRJM01 2009-05-07 SMRU1509 2011-11-15T09:28:19Z Prokka current 49 SMRU1509-sc-2011-01-27-1061722 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRJM01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1509 species_match 98.71 SAMEA1025202 7 Streptococcus pneumoniae 91.64 Streptococcus pneumoniae 1313 PRJEB2395 8 current na Best-placed reference protein set; GeneMarkS-2+ 96350 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 23F 23F species Homo sapiens 1981 Streptococcus pneumoniae Streptococcus pneumoniae ERS021019 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-05-07 v1.2.4 2012-01-20T19:59:05.900 99.31 2062486 91.64 1313 2192 2024-02-06T09:04:00.000 2062534 96172 2062472 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 162 EBI 100 GCA_053203845.1 GCF_001118105.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001118105.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRJM00000000.1 2011-11-15T09:28:19Z GCF_001118105.1 haploid public SMRU1509-sc-2011-01-27-1061722 86.13 1.56 52 2015-07-28T08:11:43 GCA_053203845.1 816331 49 6753_2#20 SMRU1509-sc-2011-01-27-1061722 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025202 1313 GCA_001118105.1 Generic.1.0 86.13 SRA GCA_001118105.1 category_na live 2018-03-09T12:05:54Z SMRU1509 PRJEB2395 Annotation submitted by SC SC SC 49 2018-03-09T12:05:54Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRJM01 2009-05-07 SMRU1509 6.10 2011-11-15T09:28:19Z Prokka current 49 SMRU1509-sc-2011-01-27-1061722 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRJM01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1509 species_match 98.71 SAMEA1025547 7 Streptococcus pneumoniae 88.69 Streptococcus pneumoniae 1313 PRJEB2395 7 current na 94949 type Streptococcus pneumoniae 2015-07-18 23F 23F species Homo sapiens 2106 Streptococcus pneumoniae Streptococcus pneumoniae ERS020872 SC 2009-03-20 v1.2.4 2012-01-20T19:57:28.426 99.11 2146403 88.69 1313 2147 2024-02-05T16:13:44.000 2146403 94949 2146393 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001196595.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 61.1485 https://www.ncbi.nlm.nih.gov/nuccore/CQUM00000000.1 2011-11-15T09:28:18Z GCA_001196595.1 haploid public SMRU1362-sc-2011-01-27-1061575 86.76 4.1 51 2015-07-28T08:11:38 GCA_053203845.1 848211 41 6710_6#18 SMRU1362-sc-2011-01-27-1061575 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025547 1313 GCF_001196595.1 Generic.1.0 86.76 SRA GCF_001196595.1 category_na live 2018-03-09T09:52:52Z SMRU1362 PRJEB2395 GCF_001196595.1-RS_2026_01_24 SC SC 51 2018-03-09T09:52:52Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQUM01 2009-03-20 SMRU1362 2011-11-15T09:28:18Z Prokka current 51 SMRU1362-sc-2011-01-27-1061575 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQUM01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1362 species_match 98.8 SAMEA1025547 7 Streptococcus pneumoniae 88.69 Streptococcus pneumoniae 1313 PRJEB2395 7 current na Best-placed reference protein set; GeneMarkS-2+ 94949 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 23F 23F species Homo sapiens 2058 Streptococcus pneumoniae Streptococcus pneumoniae ERS020872 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-20 v1.2.4 2012-01-20T19:57:28.426 99.11 2146403 88.69 1313 2279 2024-02-05T16:13:44.000 2146403 94949 2146393 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 178 EBI 100 GCA_053203845.1 GCF_001196595.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_001196595.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 61.1485 https://www.ncbi.nlm.nih.gov/nuccore/CQUM00000000.1 2011-11-15T09:28:18Z GCF_001196595.1 haploid public SMRU1362-sc-2011-01-27-1061575 86.76 4.1 51 2015-07-28T08:11:38 GCA_053203845.1 848211 43 6710_6#18 SMRU1362-sc-2011-01-27-1061575 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025547 1313 GCA_001196595.1 Generic.1.0 86.76 SRA GCA_001196595.1 category_na live 2018-03-09T09:52:52Z SMRU1362 PRJEB2395 Annotation submitted by SC SC SC 51 2018-03-09T09:52:52Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQUM01 2009-03-20 SMRU1362 6.10 2011-11-15T09:28:18Z Prokka current 51 SMRU1362-sc-2011-01-27-1061575 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQUM01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1362 species_match 98.8 SAMEA1025953 8 Streptococcus pneumoniae 90.23 Streptococcus pneumoniae 1313 PRJEB2397 8 current na 94119 type Streptococcus pneumoniae 2015-07-13 23F 23F species Homo sapiens 2078 Streptococcus pneumoniae Streptococcus pneumoniae ERS021675 SC 2009-11-30 v1.2.4 2012-01-20T20:06:35.520 99.09 2110008 90.23 1313 2125 2024-02-06T09:04:55.000 2110008 94119 2109983 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001125665.1 type nasopharynx 98.79 OK 39.5 Streptococcus pneumoniae 55.0989 https://www.ncbi.nlm.nih.gov/nuccore/CLHO00000000.1 2012-01-05T09:56:38Z GCA_001125665.1 haploid public SMRU2165-sc-2011-01-27-1062378 86.76 0.4 42 2015-07-28T08:12:29 GCA_053203845.1 833040 47 6925_5#5 SMRU2165-sc-2011-01-27-1062378 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025953 1313 GCF_001125665.1 Generic.1.0 86.76 SRA GCF_001125665.1 category_na live 2018-03-09T12:27:06Z SMRU2165 PRJEB2397 GCF_001125665.1-RS_2026_01_13 SC SC 42 2018-03-09T12:27:06Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLHO01 2009-11-30 SMRU2165 2012-01-05T09:56:38Z Prokka current 42 SMRU2165-sc-2011-01-27-1062378 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLHO01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2165 species_match 98.79 SAMEA1025953 8 Streptococcus pneumoniae 90.23 Streptococcus pneumoniae 1313 PRJEB2397 8 current na Best-placed reference protein set; GeneMarkS-2+ 94119 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-13 23F 23F species Homo sapiens 2016 Streptococcus pneumoniae Streptococcus pneumoniae ERS021675 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-11-30 v1.2.4 2012-01-20T20:06:35.520 99.09 2110008 90.23 1313 2225 2024-02-06T09:04:55.000 2110008 94119 2109983 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 160 EBI 100 GCA_053203845.1 GCF_001125665.1-RS_2026_01_13 SLX Streptococcus pneumoniae GCF_001125665.1 type nasopharynx 98.79 OK 39.5 Streptococcus pneumoniae 55.0989 https://www.ncbi.nlm.nih.gov/nuccore/CLHO00000000.1 2012-01-05T09:56:38Z GCF_001125665.1 haploid public SMRU2165-sc-2011-01-27-1062378 86.76 0.4 42 2015-07-28T08:12:29 GCA_053203845.1 833040 49 6925_5#5 SMRU2165-sc-2011-01-27-1062378 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025953 1313 GCA_001125665.1 Generic.1.0 86.76 SRA GCA_001125665.1 category_na live 2018-03-09T12:27:06Z SMRU2165 PRJEB2397 Annotation submitted by SC SC SC 42 2018-03-09T12:27:06Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLHO01 2009-11-30 SMRU2165 6.10 2012-01-05T09:56:38Z Prokka current 42 SMRU2165-sc-2011-01-27-1062378 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLHO01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2165 species_match 98.79 SAMEA1025682 7 Streptococcus pneumoniae 83.29 Streptococcus pneumoniae 1313 PRJEB2395 7 current na 91883 type Streptococcus pneumoniae 2015-07-09 23F 23F species Homo sapiens 2231 Streptococcus pneumoniae Streptococcus pneumoniae ERS020855 SC 2009-03-17 v1.2.4 2012-01-20T19:57:16.446 99.07 2275033 83.29 1313 2273 2024-02-06T09:04:40.000 2275033 91883 2275016 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001139965.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 53.4217 https://www.ncbi.nlm.nih.gov/nuccore/CIML00000000.1 2011-11-15T17:01:00Z GCA_001139965.1 haploid public SMRU1345-sc-2011-01-27-1061558 86.35 11.54 43 2015-07-28T08:11:37 GCA_053203845.1 901847 42 6710_6#1 SMRU1345-sc-2011-01-27-1061558 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025682 1313 GCF_001139965.1 Generic.1.0 86.35 SRA GCF_001139965.1 category_na live 2018-03-09T12:18:47Z SMRU1345 PRJEB2395 GCF_001139965.1-RS_2026_02_07 SC SC 43 2018-03-09T12:18:47Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIML01 2009-03-17 SMRU1345 2011-11-15T17:01:00Z Prokka current 43 SMRU1345-sc-2011-01-27-1061558 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CIML01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-09 SMRU1345 species_match 98.74 SAMEA1025682 7 Streptococcus pneumoniae 83.29 Streptococcus pneumoniae 1313 PRJEB2395 7 current na Best-placed reference protein set; GeneMarkS-2+ 91883 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-07 23F 23F species Homo sapiens 2151 Streptococcus pneumoniae Streptococcus pneumoniae ERS020855 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-17 v1.2.4 2012-01-20T19:57:16.446 99.07 2275033 83.29 1313 2382 2024-02-06T09:04:40.000 2275033 91883 2275016 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 185 EBI 100 GCA_053203845.1 GCF_001139965.1-RS_2026_02_07 SLX Streptococcus pneumoniae GCF_001139965.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 53.4217 https://www.ncbi.nlm.nih.gov/nuccore/CIML00000000.1 2011-11-15T17:01:00Z GCF_001139965.1 haploid public SMRU1345-sc-2011-01-27-1061558 86.35 11.54 43 2015-07-28T08:11:37 GCA_053203845.1 901847 46 6710_6#1 SMRU1345-sc-2011-01-27-1061558 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025682 1313 GCA_001139965.1 Generic.1.0 86.35 SRA GCA_001139965.1 category_na live 2018-03-09T12:18:47Z SMRU1345 PRJEB2395 Annotation submitted by SC SC SC 43 2018-03-09T12:18:47Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIML01 2009-03-17 SMRU1345 6.10 2011-11-15T17:01:00Z Prokka current 43 SMRU1345-sc-2011-01-27-1061558 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CIML01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-09 SMRU1345 species_match 98.74 SAMEA1025362 8 Streptococcus pneumoniae 85.56 Streptococcus pneumoniae 1313 PRJEB2395 8 current na 87733 type Streptococcus pneumoniae 2015-07-22 23F 23F species Homo sapiens 2195 Streptococcus pneumoniae Streptococcus pneumoniae ERS021095 SC 2009-05-28 v1.2.4 2012-01-20T19:59:54.990 99.11 2219920 85.56 1313 2238 2024-02-05T16:19:54.000 2219952 86888 2219882 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001204215.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 61.1485 https://www.ncbi.nlm.nih.gov/nuccore/CRWT00000000.1 2011-12-05T16:07:35Z GCA_001204215.1 haploid public SMRU1585-sc-2011-01-27-1061798 86.55 4.4 57 2015-07-28T08:12:02 GCA_053203845.1 878824 43 6807_2#1 SMRU1585-sc-2011-01-27-1061798 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025362 1313 GCF_001204215.1 Generic.1.0 86.55 SRA GCF_001204215.1 category_na live 2018-03-09T09:52:56Z SMRU1585 PRJEB2395 GCF_001204215.1-RS_2026_02_05 SC SC 55 2018-03-09T09:52:56Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRWT01 2009-05-28 SMRU1585 2011-12-05T16:07:35Z Prokka current 55 SMRU1585-sc-2011-01-27-1061798 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRWT01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-22 SMRU1585 species_match 98.73 SAMEA1025362 8 Streptococcus pneumoniae 85.56 Streptococcus pneumoniae 1313 PRJEB2395 8 current na Best-placed reference protein set; GeneMarkS-2+ 87733 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-05 23F 23F species Homo sapiens 2127 Streptococcus pneumoniae Streptococcus pneumoniae ERS021095 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-05-28 v1.2.4 2012-01-20T19:59:54.990 99.11 2219920 85.56 1313 2356 2024-02-05T16:19:54.000 2219952 86888 2219882 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 183 EBI 100 GCA_053203845.1 GCF_001204215.1-RS_2026_02_05 SLX Streptococcus pneumoniae GCF_001204215.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 61.1485 https://www.ncbi.nlm.nih.gov/nuccore/CRWT00000000.1 2011-12-05T16:07:35Z GCF_001204215.1 haploid public SMRU1585-sc-2011-01-27-1061798 86.55 4.4 57 2015-07-28T08:12:02 GCA_053203845.1 878824 46 6807_2#1 SMRU1585-sc-2011-01-27-1061798 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025362 1313 GCA_001204215.1 Generic.1.0 86.55 SRA GCA_001204215.1 category_na live 2018-03-09T09:52:56Z SMRU1585 PRJEB2395 Annotation submitted by SC SC SC 55 2018-03-09T09:52:56Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRWT01 2009-05-28 SMRU1585 6.10 2011-12-05T16:07:35Z Prokka current 55 SMRU1585-sc-2011-01-27-1061798 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRWT01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-22 SMRU1585 species_match 98.73 SAMEA1025562 7 Streptococcus pneumoniae 89.68 Streptococcus pneumoniae 1313 PRJEB2395 7 current na 85020 type Streptococcus pneumoniae 2015-07-22 23F 23F species Homo sapiens 2145 Streptococcus pneumoniae Streptococcus pneumoniae ERS021113 SC 2009-06-03 v1.2.4 2012-01-20T20:00:07.486 99.11 2158833 89.68 1313 2192 2024-02-05T16:21:17.000 2158852 85020 2158820 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001197395.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 61.1485 https://www.ncbi.nlm.nih.gov/nuccore/CRXG00000000.1 2011-12-05T16:07:36Z GCA_001197395.1 haploid public SMRU1603-sc-2011-01-27-1061816 88.22 0.52 43 2015-07-28T08:12:03 GCA_053203845.1 853237 47 6807_2#19 SMRU1603-sc-2011-01-27-1061816 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025562 1313 GCF_001197395.1 Generic.1.0 88.22 SRA GCF_001197395.1 category_na live 2018-03-09T09:52:57Z SMRU1603 PRJEB2395 GCF_001197395.1-RS_2026_02_02 SC SC 42 2018-03-09T09:52:57Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRXG01 2009-06-03 SMRU1603 2011-12-05T16:07:36Z Prokka current 42 SMRU1603-sc-2011-01-27-1061816 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRXG01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-22 SMRU1603 species_match 98.75 SAMEA1025562 7 Streptococcus pneumoniae 89.68 Streptococcus pneumoniae 1313 PRJEB2395 7 current na Best-placed reference protein set; GeneMarkS-2+ 85020 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-02 23F 23F species Homo sapiens 2085 Streptococcus pneumoniae Streptococcus pneumoniae ERS021113 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-06-03 v1.2.4 2012-01-20T20:00:07.486 99.11 2158833 89.68 1313 2308 2024-02-05T16:21:17.000 2158852 85020 2158820 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 172 EBI 100 GCA_053203845.1 GCF_001197395.1-RS_2026_02_02 SLX Streptococcus pneumoniae GCF_001197395.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 61.1485 https://www.ncbi.nlm.nih.gov/nuccore/CRXG00000000.1 2011-12-05T16:07:36Z GCF_001197395.1 haploid public SMRU1603-sc-2011-01-27-1061816 88.22 0.52 43 2015-07-28T08:12:03 GCA_053203845.1 853237 51 6807_2#19 SMRU1603-sc-2011-01-27-1061816 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025562 1313 GCA_001197395.1 Generic.1.0 88.22 SRA GCA_001197395.1 category_na live 2018-03-09T09:52:57Z SMRU1603 PRJEB2395 Annotation submitted by SC SC SC 42 2018-03-09T09:52:57Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRXG01 2009-06-03 SMRU1603 6.10 2011-12-05T16:07:36Z Prokka current 42 SMRU1603-sc-2011-01-27-1061816 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRXG01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-22 SMRU1603 species_match 98.75 SAMEA1024877 8 Streptococcus pneumoniae 85.87 Streptococcus pneumoniae 1313 PRJEB2393 9 current na 111582 type Streptococcus pneumoniae 2015-07-18 23F 23F species Homo sapiens 2160 Streptococcus pneumoniae Streptococcus pneumoniae ERS020597 SC 2008-12-01 v1.2.4 2012-01-20T19:54:26.726 99.0 2216630 85.87 1313 2199 2024-02-05T16:31:48.000 2216831 75545 2216597 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001205755.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 46.8856 https://www.ncbi.nlm.nih.gov/nuccore/CREJ00000000.1 2011-11-02T10:11:57Z GCA_001205755.1 haploid public SMRU1087-sc-2011-01-27-1061300 86.74 6.85 60 2015-07-28T08:11:13 GCA_053203845.1 878928 39 6731_5#7 SMRU1087-sc-2011-01-27-1061300 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024877 1313 GCF_001205755.1 Generic.1.0 86.74 SRA GCF_001205755.1 category_na live 2018-03-09T09:53:06Z SMRU1087 PRJEB2393 GCF_001205755.1-RS_2026_02_05 SC SC 52 2018-03-09T09:53:06Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CREJ01 2008-12-01 SMRU1087 2011-11-02T10:11:57Z Prokka current 52 SMRU1087-sc-2011-01-27-1061300 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CREJ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1087 species_match 98.8 SAMEA1024877 8 Streptococcus pneumoniae 85.87 Streptococcus pneumoniae 1313 PRJEB2393 9 current na Best-placed reference protein set; GeneMarkS-2+ 111582 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-05 23F 23F species Homo sapiens 2100 Streptococcus pneumoniae Streptococcus pneumoniae ERS020597 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-12-01 v1.2.4 2012-01-20T19:54:26.726 99.0 2216630 85.87 1313 2323 2024-02-05T16:31:48.000 2216831 75545 2216597 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 183 EBI 100 GCA_053203845.1 GCF_001205755.1-RS_2026_02_05 SLX Streptococcus pneumoniae GCF_001205755.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 46.8856 https://www.ncbi.nlm.nih.gov/nuccore/CREJ00000000.1 2011-11-02T10:11:57Z GCF_001205755.1 haploid public SMRU1087-sc-2011-01-27-1061300 86.74 6.85 60 2015-07-28T08:11:13 GCA_053203845.1 878928 40 6731_5#7 SMRU1087-sc-2011-01-27-1061300 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024877 1313 GCA_001205755.1 Generic.1.0 86.74 SRA GCA_001205755.1 category_na live 2018-03-09T09:53:06Z SMRU1087 PRJEB2393 Annotation submitted by SC SC SC 52 2018-03-09T09:53:06Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CREJ01 2008-12-01 SMRU1087 6.10 2011-11-02T10:11:57Z Prokka current 52 SMRU1087-sc-2011-01-27-1061300 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CREJ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1087 species_match 98.8 SAMEA1025237 10 Streptococcus pneumoniae 89.8 Streptococcus pneumoniae 1313 PRJEB2395 10 current na 75490 type Streptococcus pneumoniae 2015-07-18 23F 23F species Homo sapiens 2079 Streptococcus pneumoniae Streptococcus pneumoniae ERS020766 SC 2009-02-09 v1.2.4 2012-01-20T19:56:19.540 99.06 2113554 89.8 1313 2120 2024-02-06T09:04:18.000 2113565 74497 2113540 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001197635.1 type nasopharynx 98.82 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CRGY00000000.1 2011-11-15T09:28:16Z GCA_001197635.1 haploid public SMRU1256-sc-2011-01-27-1061469 86.49 0.77 49 2015-07-28T08:11:33 GCA_053203845.1 834050 41 6736_6#8 SMRU1256-sc-2011-01-27-1061469 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025237 1313 GCF_001197635.1 Generic.1.0 86.49 SRA GCF_001197635.1 category_na live 2018-03-09T12:11:33Z SMRU1256 PRJEB2395 GCF_001197635.1-RS_2026_01_18 SC SC 48 2018-03-09T12:11:33Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRGY01 2009-02-09 SMRU1256 2011-11-15T09:28:16Z Prokka current 48 SMRU1256-sc-2011-01-27-1061469 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRGY01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1256 species_match 98.82 SAMEA1025237 10 Streptococcus pneumoniae 89.8 Streptococcus pneumoniae 1313 PRJEB2395 10 current na Best-placed reference protein set; GeneMarkS-2+ 75490 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 23F 23F species Homo sapiens 2034 Streptococcus pneumoniae Streptococcus pneumoniae ERS020766 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-02-09 v1.2.4 2012-01-20T19:56:19.540 99.06 2113554 89.8 1313 2244 2024-02-06T09:04:18.000 2113565 74497 2113540 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 166 EBI 100 GCA_053203845.1 GCF_001197635.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001197635.1 type nasopharynx 98.82 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CRGY00000000.1 2011-11-15T09:28:16Z GCF_001197635.1 haploid public SMRU1256-sc-2011-01-27-1061469 86.49 0.77 49 2015-07-28T08:11:33 GCA_053203845.1 834050 44 6736_6#8 SMRU1256-sc-2011-01-27-1061469 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025237 1313 GCA_001197635.1 Generic.1.0 86.49 SRA GCA_001197635.1 category_na live 2018-03-09T12:11:33Z SMRU1256 PRJEB2395 Annotation submitted by SC SC SC 48 2018-03-09T12:11:33Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRGY01 2009-02-09 SMRU1256 6.10 2011-11-15T09:28:16Z Prokka current 48 SMRU1256-sc-2011-01-27-1061469 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRGY01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1256 species_match 98.82 SAMEA1026067 9 Streptococcus pneumoniae 89.03 Streptococcus pneumoniae 1313 PRJEB2397 9 current na 81161 type Streptococcus pneumoniae 2015-07-13 23F 23F species Homo sapiens 2098 Streptococcus pneumoniae Streptococcus pneumoniae ERS021523 SC 2009-10-20 v1.2.4 2012-01-20T20:04:38.133 99.06 2127257 89.03 1313 2139 2024-02-06T09:03:56.000 2127388 73192 2127235 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001107085.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CKYF00000000.1 2011-12-05T16:07:35Z GCA_001107085.1 haploid public SMRU2013-sc-2011-01-27-1062226 86.31 1.41 71 2015-07-28T08:12:14 GCA_053203845.1 839207 41 6823_7#21 SMRU2013-sc-2011-01-27-1062226 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026067 1313 GCF_001107085.1 Generic.1.0 86.31 SRA GCF_001107085.1 category_na live 2018-03-09T12:04:52Z SMRU2013 PRJEB2397 GCF_001107085.1-RS_2026_01_31 SC SC 67 2018-03-09T12:04:52Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKYF01 2009-10-20 SMRU2013 2011-12-05T16:07:35Z Prokka current 67 SMRU2013-sc-2011-01-27-1062226 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKYF01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2013 species_match 98.75 SAMEA1026067 9 Streptococcus pneumoniae 89.03 Streptococcus pneumoniae 1313 PRJEB2397 9 current na Best-placed reference protein set; GeneMarkS-2+ 81161 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 23F 23F species Homo sapiens 2012 Streptococcus pneumoniae Streptococcus pneumoniae ERS021523 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-10-20 v1.2.4 2012-01-20T20:04:38.133 99.06 2127257 89.03 1313 2252 2024-02-06T09:03:56.000 2127388 73192 2127235 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 195 EBI 100 GCA_053203845.1 GCF_001107085.1-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_001107085.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CKYF00000000.1 2011-12-05T16:07:35Z GCF_001107085.1 haploid public SMRU2013-sc-2011-01-27-1062226 86.31 1.41 71 2015-07-28T08:12:14 GCA_053203845.1 839207 45 6823_7#21 SMRU2013-sc-2011-01-27-1062226 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026067 1313 GCA_001107085.1 Generic.1.0 86.31 SRA GCA_001107085.1 category_na live 2018-03-09T12:04:52Z SMRU2013 PRJEB2397 Annotation submitted by SC SC SC 67 2018-03-09T12:04:52Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKYF01 2009-10-20 SMRU2013 6.10 2011-12-05T16:07:35Z Prokka current 67 SMRU2013-sc-2011-01-27-1062226 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKYF01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2013 species_match 98.75 SAMEA1024584 9 Streptococcus pneumoniae 89.52 Streptococcus pneumoniae 1313 PRJEB2393 9 current na 70845 type Streptococcus pneumoniae 2015-07-24 23F 23F species Homo sapiens 2116 Streptococcus pneumoniae Streptococcus pneumoniae ERS020182 SC 2008-08-18 v1.2.4 2012-01-20T19:49:50.516 99.28 2122381 89.52 1313 2155 2024-02-06T09:03:49.000 2122474 70845 2122358 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001337235.1 type nasopharynx 98.54 OK 39.5 Streptococcus pneumoniae 78.4969 https://www.ncbi.nlm.nih.gov/nuccore/CHQE00000000.1 2011-11-02T10:11:59Z GCA_001337235.1 haploid public SMRU672-sc-2011-01-27-1060861 86.58 0.62 66 2015-07-28T08:11:04 GCA_053203845.1 840468 39 6730_5#24 SMRU672-sc-2011-01-27-1060861 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024584 1313 GCF_001337235.1 Generic.1.0 86.58 SRA GCF_001337235.1 category_na live 2018-03-09T12:03:08Z SMRU672 PRJEB2393 GCF_001337235.1-RS_2026_01_19 SC SC 63 2018-03-09T12:03:08Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHQE01 2008-08-18 SMRU672 2011-11-02T10:11:59Z Prokka current 63 SMRU672-sc-2011-01-27-1060861 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHQE01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU672 species_match 98.54 SAMEA1024584 9 Streptococcus pneumoniae 89.52 Streptococcus pneumoniae 1313 PRJEB2393 9 current na Best-placed reference protein set; GeneMarkS-2+ 70845 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 23F 23F species Homo sapiens 2036 Streptococcus pneumoniae Streptococcus pneumoniae ERS020182 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-08-18 v1.2.4 2012-01-20T19:49:50.516 99.28 2122381 89.52 1313 2242 2024-02-06T09:03:49.000 2122474 70845 2122358 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 163 EBI 100 GCA_053203845.1 GCF_001337235.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001337235.1 type nasopharynx 98.54 OK 39.5 Streptococcus pneumoniae 78.4969 https://www.ncbi.nlm.nih.gov/nuccore/CHQE00000000.1 2011-11-02T10:11:59Z GCF_001337235.1 haploid public SMRU672-sc-2011-01-27-1060861 86.58 0.62 66 2015-07-28T08:11:04 GCA_053203845.1 840468 43 6730_5#24 SMRU672-sc-2011-01-27-1060861 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024584 1313 GCA_001337235.1 Generic.1.0 86.58 SRA GCA_001337235.1 category_na live 2018-03-09T12:03:08Z SMRU672 PRJEB2393 Annotation submitted by SC SC SC 63 2018-03-09T12:03:08Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHQE01 2008-08-18 SMRU672 6.10 2011-11-02T10:11:59Z Prokka current 63 SMRU672-sc-2011-01-27-1060861 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHQE01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU672 species_match 98.54 SAMEA1029412 6 Streptococcus pneumoniae 90.48 Streptococcus pneumoniae 1313 PRJEB2480 6 current na 119459 type Streptococcus pneumoniae 2015-07-14 24F 24F species Homo sapiens 2035 Streptococcus pneumoniae Streptococcus pneumoniae ERS022651 SC 2009-05-26 v1.2.4 2012-02-09T20:49:58.543 98.1 2075547 90.48 1313 2074 2024-02-06T09:02:11.000 2075557 119459 2075532 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001138965.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 8.09807 https://www.ncbi.nlm.nih.gov/nuccore/CMMO00000000.1 2012-02-07T17:03:03Z GCA_001138965.1 haploid public SMRU3141-sc-2011-01-27-1063354 88.96 0.77 41 2015-07-28T08:13:21 GCA_001457635.1 820108 39 7068_4#21 SMRU3141-sc-2011-01-27-1063354 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029412 1313 GCF_001138965.1 Generic.1.0 88.96 SRA GCF_001138965.1 category_na live 2018-03-09T11:41:07Z SMRU3141 PRJEB2480 GCF_001138965.1-RS_2025_08_18 SC SC 40 2018-03-09T11:41:07Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMMO01 2009-05-26 SMRU3141 2012-02-07T17:03:03Z Prokka current 40 SMRU3141-sc-2011-01-27-1063354 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMMO01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU3141 species_match 98.76 SAMEA1029412 6 Streptococcus pneumoniae 90.48 Streptococcus pneumoniae 1313 PRJEB2480 6 current na Best-placed reference protein set; GeneMarkS-2+ 119459 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-18 24F 24F species Homo sapiens 1962 Streptococcus pneumoniae Streptococcus pneumoniae ERS022651 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-05-26 v1.2.4 2012-02-09T20:49:58.543 98.1 2075547 90.48 1313 2180 2024-02-06T09:02:11.000 2075557 119459 2075532 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 177 EBI 100 GCA_001457635.1 GCF_001138965.1-RS_2025_08_18 SLX Streptococcus pneumoniae GCF_001138965.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 8.09807 https://www.ncbi.nlm.nih.gov/nuccore/CMMO00000000.1 2012-02-07T17:03:03Z GCF_001138965.1 haploid public SMRU3141-sc-2011-01-27-1063354 88.96 0.77 41 2015-07-28T08:13:21 GCA_001457635.1 820108 41 7068_4#21 SMRU3141-sc-2011-01-27-1063354 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029412 1313 GCA_001138965.1 Generic.1.0 88.96 SRA GCA_001138965.1 category_na live 2018-03-09T11:41:07Z SMRU3141 PRJEB2480 Annotation submitted by SC SC SC 40 2018-03-09T11:41:07Z 2012-02-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMMO01 2009-05-26 SMRU3141 6.10 2012-02-07T17:03:03Z Prokka current 40 SMRU3141-sc-2011-01-27-1063354 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMMO01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU3141 species_match 98.76 SAMEA1023834 9 Streptococcus pneumoniae 91.09 Streptococcus pneumoniae 1313 PRJEB2357 9 current na 92082 type Streptococcus pneumoniae 2015-07-11 33B 33B species Homo sapiens 2126 Streptococcus pneumoniae Streptococcus pneumoniae ERS019270 SC 2008-02-18 v1.2.4 2012-01-20T19:42:16.093 99.15 2121746 91.09 1313 2172 2024-02-05T16:27:43.000 2121746 92082 2121726 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001088885.1 type nasopharynx 98.68 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CKCC00000000.1 2011-10-11T09:20:03Z GCA_001088885.1 haploid public SMRU112-sc-2011-01-27-1060301 88.07 0.31 46 2016-01-29T08:05:17 GCA_053203845.1 841272 46 6593_4#16 SMRU112-sc-2011-01-27-1060301 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023834 1313 GCF_001088885.1 Generic.1.0 88.07 SRA GCF_001088885.1 category_na live 2018-03-09T09:53:03Z SMRU112 PRJEB2357 GCF_001088885.1-RS_2026_01_22 SC SC 46 2018-03-09T09:53:03Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKCC01 2008-02-18 33B 2011-10-11T09:20:03Z Prokka current 46 SMRU112-sc-2011-01-27-1060301 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKCC01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU112 species_match 98.68 SAMEA1023834 9 Streptococcus pneumoniae 91.09 Streptococcus pneumoniae 1313 PRJEB2357 9 current na Best-placed reference protein set; GeneMarkS-2+ 92082 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 33B 33B species Homo sapiens 2026 Streptococcus pneumoniae Streptococcus pneumoniae ERS019270 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-02-18 v1.2.4 2012-01-20T19:42:16.093 99.15 2121746 91.09 1313 2251 2024-02-05T16:27:43.000 2121746 92082 2121726 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 176 EBI 100 GCA_053203845.1 GCF_001088885.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_001088885.1 type nasopharynx 98.68 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CKCC00000000.1 2011-10-11T09:20:03Z GCF_001088885.1 haploid public SMRU112-sc-2011-01-27-1060301 88.07 0.31 46 2016-01-29T08:05:17 GCA_053203845.1 841272 49 6593_4#16 SMRU112-sc-2011-01-27-1060301 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023834 1313 GCA_001088885.1 Generic.1.0 88.07 SRA GCA_001088885.1 category_na live 2018-03-09T09:53:03Z SMRU112 PRJEB2357 Annotation submitted by SC SC SC 46 2018-03-09T09:53:03Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKCC01 2008-02-18 SMRU112 6.10 2011-10-11T09:20:03Z Prokka current 46 SMRU112-sc-2011-01-27-1060301 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKCC01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU112 species_match 98.68 SAMEA1026118 8 Streptococcus pneumoniae 87.52 Streptococcus pneumoniae 1313 PRJEB2397 8 current na 83086 type Streptococcus pneumoniae 2015-07-18 24F 24F species Homo sapiens 2125 Streptococcus pneumoniae Streptococcus pneumoniae ERS021242 SC 2009-07-16 v1.2.4 2012-01-20T20:01:34.106 98.41 2150414 87.52 1313 2164 2024-02-06T09:04:07.000 2150414 83086 2150398 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001205475.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 16.0361 https://www.ncbi.nlm.nih.gov/nuccore/CRVX00000000.1 2011-11-29T12:03:49Z GCA_001205475.1 haploid public SMRU1732-sc-2011-01-27-1061945 89.16 3.64 49 2015-07-28T08:11:58 GCA_001457635.1 851472 39 6805_7#4 SMRU1732-sc-2011-01-27-1061945 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026118 1313 GCF_001205475.1 Generic.1.0 89.16 SRA GCF_001205475.1 category_na live 2018-03-09T12:08:17Z SMRU1732 PRJEB2397 GCF_001205475.1-RS_2026_01_25 SC SC 49 2018-03-09T12:08:17Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRVX01 2009-07-16 SMRU1732 2011-11-29T12:03:49Z Prokka current 49 SMRU1732-sc-2011-01-27-1061945 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRVX01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1732 species_match 98.76 SAMEA1026118 8 Streptococcus pneumoniae 87.52 Streptococcus pneumoniae 1313 PRJEB2397 8 current na Best-placed reference protein set; GeneMarkS-2+ 83086 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 24F 24F species Homo sapiens 2055 Streptococcus pneumoniae Streptococcus pneumoniae ERS021242 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-07-16 v1.2.4 2012-01-20T20:01:34.106 98.41 2150414 87.52 1313 2281 2024-02-06T09:04:07.000 2150414 83086 2150398 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 184 EBI 100 GCA_001457635.1 GCF_001205475.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001205475.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 16.0361 https://www.ncbi.nlm.nih.gov/nuccore/CRVX00000000.1 2011-11-29T12:03:49Z GCF_001205475.1 haploid public SMRU1732-sc-2011-01-27-1061945 89.16 3.64 49 2015-07-28T08:11:58 GCA_001457635.1 851472 42 6805_7#4 SMRU1732-sc-2011-01-27-1061945 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026118 1313 GCA_001205475.1 Generic.1.0 89.16 SRA GCA_001205475.1 category_na live 2018-03-09T12:08:17Z SMRU1732 PRJEB2397 Annotation submitted by SC SC SC 49 2018-03-09T12:08:17Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRVX01 2009-07-16 SMRU1732 6.10 2011-11-29T12:03:49Z Prokka current 49 SMRU1732-sc-2011-01-27-1061945 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRVX01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1732 species_match 98.76 SAMEA2626872 6 Streptococcus pneumoniae 92.15 Streptococcus pneumoniae 1313 PRJEB6332 8 current na 150463 type Streptococcus pneumoniae 2017-06-28 24F 24F species Homo sapiens 2115 Streptococcus pneumoniae ERS496782 SC 2013-03-14 v1.2.4 2014-10-29T11:14:19.233 98.84 2115481 92.15 1313 2158 2017-06-24T16:11:31.000 2118943 81818 2115480 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900195095.1 type Nasophaynx 98.74 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FZEC00000000.1 2014-10-15 GCA_900195095.1 haploid ERS496782 88.84 0.83 47 2017-06-28T08:06:42 GCA_053203845.1 836666 43 13681_2#37 United Kingdom UOS_7175-sc-1922712; 13681_237 1313 GCF_900195095.1 Generic.1.0 88.84 SRA Sample Description GCF_900195095.1 category_na live 2017-06-22 3063STDY5801813 PRJEB6332 GCF_900195095.1-RS_2025_09_02 SC 33 1922712 2017-06-23T00:00:00.000 UOS_7175 https://www.ncbi.nlm.nih.gov/Traces/wgs/FZEC01 2013-03-14 3063STDY5801813 Prokka current 33 ERS496782 Generic Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease FZEC01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-28 3063STDY5801813 species_match 98.74 SAMEA2626872 6 Streptococcus pneumoniae 92.15 Streptococcus pneumoniae 1313 PRJEB6332 8 current na Best-placed reference protein set; GeneMarkS-2+ 150463 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-02 24F 24F species Homo sapiens 1994 Streptococcus pneumoniae ERS496782 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2013-03-14 v1.2.4 2014-10-29T11:14:19.233 98.84 2115481 92.15 1313 2226 2017-06-24T16:11:31.000 2118943 81818 2115480 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 182 EBI 100 GCA_053203845.1 GCF_900195095.1-RS_2025_09_02 SLX Streptococcus pneumoniae GCF_900195095.1 type Nasophaynx 98.74 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FZEC00000000.1 2014-10-15 GCF_900195095.1 haploid ERS496782 88.84 0.83 47 2017-06-28T08:06:42 GCA_053203845.1 836666 50 13681_2#37 United Kingdom UOS_7175-sc-1922712; 13681_237 1313 GCA_900195095.1 Generic.1.0 88.84 SRA Sample Description GCA_900195095.1 category_na live 2017-06-22 3063STDY5801813 PRJEB6332 Annotation submitted by SC SC 33 1922712 2017-06-23T00:00:00.000 UOS_7175 https://www.ncbi.nlm.nih.gov/Traces/wgs/FZEC01 2013-03-14 3063STDY5801813 6.10 Prokka current 33 ERS496782 Generic Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease FZEC01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-28 3063STDY5801813 species_match 98.74 SAMEA1025108 6 Streptococcus pneumoniae 87.4 Streptococcus pneumoniae 1313 PRJEB2393 7 current na 84200 type Streptococcus pneumoniae 2015-07-18 24F 24F species Homo sapiens 2134 Streptococcus pneumoniae Streptococcus pneumoniae ERS020140 SC 2008-08-06 v1.2.4 2012-01-20T19:49:21.296 98.68 2152725 87.4 1313 2175 2024-02-05T16:16:42.000 2152779 80440 2152702 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001204935.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 25.3377 https://www.ncbi.nlm.nih.gov/nuccore/CRQZ00000000.1 2011-12-05T16:07:35Z GCA_001204935.1 haploid public SMRU630-sc-2011-01-27-1060819 89.13 2.54 56 2015-07-28T08:11:59 GCA_001457635.1 849416 41 6791_6#6 SMRU630-sc-2011-01-27-1060819 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025108 1313 GCF_001204935.1 Generic.1.0 89.13 SRA GCF_001204935.1 category_na live 2018-03-09T09:52:54Z SMRU630 PRJEB2393 GCF_001204935.1-RS_2026_02_04 SC SC 54 2018-03-09T09:52:54Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRQZ01 2008-08-06 SMRU630 2011-12-05T16:07:35Z Prokka current 54 SMRU630-sc-2011-01-27-1060819 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRQZ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU630 species_match 98.76 SAMEA1025108 6 Streptococcus pneumoniae 87.4 Streptococcus pneumoniae 1313 PRJEB2393 7 current na Best-placed reference protein set; GeneMarkS-2+ 84200 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-04 24F 24F species Homo sapiens 2058 Streptococcus pneumoniae Streptococcus pneumoniae ERS020140 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-08-06 v1.2.4 2012-01-20T19:49:21.296 98.68 2152725 87.4 1313 2299 2024-02-05T16:16:42.000 2152779 80440 2152702 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 196 EBI 100 GCA_001457635.1 GCF_001204935.1-RS_2026_02_04 SLX Streptococcus pneumoniae GCF_001204935.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 25.3377 https://www.ncbi.nlm.nih.gov/nuccore/CRQZ00000000.1 2011-12-05T16:07:35Z GCF_001204935.1 haploid public SMRU630-sc-2011-01-27-1060819 89.13 2.54 56 2015-07-28T08:11:59 GCA_001457635.1 849416 45 6791_6#6 SMRU630-sc-2011-01-27-1060819 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025108 1313 GCA_001204935.1 Generic.1.0 89.13 SRA GCA_001204935.1 category_na live 2018-03-09T09:52:54Z SMRU630 PRJEB2393 Annotation submitted by SC SC SC 54 2018-03-09T09:52:54Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRQZ01 2008-08-06 SMRU630 6.10 2011-12-05T16:07:35Z Prokka current 54 SMRU630-sc-2011-01-27-1060819 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRQZ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU630 species_match 98.76 SAMEA1023891 6 Streptococcus pneumoniae 93.06 Streptococcus pneumoniae 1313 PRJEB2357 6 current na 79677 type Streptococcus pneumoniae 2015-07-11 28F 28F species Homo sapiens 1947 Streptococcus pneumoniae Streptococcus pneumoniae ERS019686 SC 2008-05-09 v1.2.4 2012-01-20T19:46:55.696 98.79 2005628 93.06 1313 1986 2024-02-06T09:03:53.000 2005639 78604 2005601 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001152645.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 32.4307 https://www.ncbi.nlm.nih.gov/nuccore/CKKZ00000000.1 2011-10-11T09:20:04Z GCA_001152645.1 haploid public SMRU528-sc-2011-01-27-1060717 85.06 1.25 42 2016-01-29T08:05:26 GCA_053203845.1 795760 39 6631_7#24 SMRU528-sc-2011-01-27-1060717 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023891 1313 GCF_001152645.1 Generic.1.0 85.06 SRA GCF_001152645.1 category_na live 2018-03-09T12:04:14Z SMRU528 PRJEB2357 GCF_001152645.1-RS_2026_02_01 SC SC 41 2018-03-09T12:04:14Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKKZ01 2008-05-09 28F 2011-10-11T09:20:04Z Prokka current 41 SMRU528-sc-2011-01-27-1060717 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKKZ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU528 species_match 98.76 SAMEA1023891 6 Streptococcus pneumoniae 93.06 Streptococcus pneumoniae 1313 PRJEB2357 6 current na Best-placed reference protein set; GeneMarkS-2+ 79677 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 28F 28F species Homo sapiens 1878 Streptococcus pneumoniae Streptococcus pneumoniae ERS019686 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-05-09 v1.2.4 2012-01-20T19:46:55.696 98.79 2005628 93.06 1313 2078 2024-02-06T09:03:53.000 2005639 78604 2005601 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 159 EBI 100 GCA_053203845.1 GCF_001152645.1-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_001152645.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 32.4307 https://www.ncbi.nlm.nih.gov/nuccore/CKKZ00000000.1 2011-10-11T09:20:04Z GCF_001152645.1 haploid public SMRU528-sc-2011-01-27-1060717 85.06 1.25 42 2016-01-29T08:05:26 GCA_053203845.1 795760 41 6631_7#24 SMRU528-sc-2011-01-27-1060717 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023891 1313 GCA_001152645.1 Generic.1.0 85.06 SRA GCA_001152645.1 category_na live 2018-03-09T12:04:14Z SMRU528 PRJEB2357 Annotation submitted by SC SC SC 41 2018-03-09T12:04:14Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKKZ01 2008-05-09 SMRU528 6.10 2011-10-11T09:20:04Z Prokka current 41 SMRU528-sc-2011-01-27-1060717 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKKZ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU528 species_match 98.76 SAMEA1029058 8 Streptococcus pneumoniae 88.23 Streptococcus pneumoniae 1313 PRJEB2479 8 current na 77969 type Streptococcus pneumoniae 2015-07-13 24F 24F species Homo sapiens 2107 Streptococcus pneumoniae Streptococcus pneumoniae ERS022187 SC 2010-05-05 v1.2.4 2012-04-15T02:39:42.950 99.12 2111443 88.23 1313 2150 2024-02-06T09:02:18.000 2111443 77969 2111418 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001166365.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 62.8385 https://www.ncbi.nlm.nih.gov/nuccore/CLLS00000000.1 2012-03-19T14:11:23Z GCA_001166365.1 haploid public SMRU2677-sc-2011-01-27-1062890 88.25 0.68 42 2015-07-28T08:13:25 GCA_001457635.1 836729 43 6938_6#13 SMRU2677-sc-2011-01-27-1062890 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029058 1313 GCF_001166365.1 Generic.1.0 88.25 SRA GCF_001166365.1 category_na live 2018-03-09T11:42:35Z SMRU2677 PRJEB2479 GCF_001166365.1-RS_2026_01_07 SC SC 42 2018-03-09T11:42:35Z 2012-03-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLLS01 2010-05-05 SMRU2677 2012-03-19T14:11:23Z Prokka current 42 SMRU2677-sc-2011-01-27-1062890 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLLS01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2677 species_match 98.73 SAMEA1029058 8 Streptococcus pneumoniae 88.23 Streptococcus pneumoniae 1313 PRJEB2479 8 current na Best-placed reference protein set; GeneMarkS-2+ 77969 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-07 24F 24F species Homo sapiens 2018 Streptococcus pneumoniae Streptococcus pneumoniae ERS022187 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-05-05 v1.2.4 2012-04-15T02:39:42.950 99.12 2111443 88.23 1313 2212 2024-02-06T09:02:18.000 2111443 77969 2111418 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 149 EBI 100 GCA_001457635.1 GCF_001166365.1-RS_2026_01_07 SLX Streptococcus pneumoniae GCF_001166365.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 62.8385 https://www.ncbi.nlm.nih.gov/nuccore/CLLS00000000.1 2012-03-19T14:11:23Z GCF_001166365.1 haploid public SMRU2677-sc-2011-01-27-1062890 88.25 0.68 42 2015-07-28T08:13:25 GCA_001457635.1 836729 45 6938_6#13 SMRU2677-sc-2011-01-27-1062890 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029058 1313 GCA_001166365.1 Generic.1.0 88.25 SRA GCA_001166365.1 category_na live 2018-03-09T11:42:35Z SMRU2677 PRJEB2479 Annotation submitted by SC SC SC 42 2018-03-09T11:42:35Z 2012-03-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLLS01 2010-05-05 SMRU2677 6.10 2012-03-19T14:11:23Z Prokka current 42 SMRU2677-sc-2011-01-27-1062890 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLLS01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2677 species_match 98.73 SAMEA1025066 8 Streptococcus pneumoniae 88.8 Streptococcus pneumoniae 1313 PRJEB2393 9 current na 81676 type Streptococcus pneumoniae 2015-07-18 24F 24F species Homo sapiens 2098 Streptococcus pneumoniae Streptococcus pneumoniae ERS020235 SC 2008-09-08 v1.2.4 2012-01-20T19:50:25.933 98.52 2115740 88.8 1313 2134 2024-02-05T16:28:12.000 2115888 77570 2115714 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001158225.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 18.9553 https://www.ncbi.nlm.nih.gov/nuccore/CRBG00000000.1 2011-11-02T10:12:00Z GCA_001158225.1 haploid public SMRU725-sc-2011-01-27-1060914 89.01 1.23 62 2015-07-28T08:11:07 GCA_001457635.1 836213 36 6730_8#5 SMRU725-sc-2011-01-27-1060914 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025066 1313 GCF_001158225.1 Generic.1.0 89.01 SRA GCF_001158225.1 category_na live 2018-03-09T09:53:03Z SMRU725 PRJEB2393 GCF_001158225.1-RS_2026_01_31 SC SC 58 2018-03-09T09:53:03Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRBG01 2008-09-08 SMRU725 2011-11-02T10:12:00Z Prokka current 58 SMRU725-sc-2011-01-27-1060914 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRBG01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU725 species_match 98.76 SAMEA1025066 8 Streptococcus pneumoniae 88.8 Streptococcus pneumoniae 1313 PRJEB2393 9 current na Best-placed reference protein set; GeneMarkS-2+ 81676 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 24F 24F species Homo sapiens 2020 Streptococcus pneumoniae Streptococcus pneumoniae ERS020235 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-09-08 v1.2.4 2012-01-20T19:50:25.933 98.52 2115740 88.8 1313 2246 2024-02-05T16:28:12.000 2115888 77570 2115714 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 187 EBI 100 GCA_001457635.1 GCF_001158225.1-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_001158225.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 18.9553 https://www.ncbi.nlm.nih.gov/nuccore/CRBG00000000.1 2011-11-02T10:12:00Z GCF_001158225.1 haploid public SMRU725-sc-2011-01-27-1060914 89.01 1.23 62 2015-07-28T08:11:07 GCA_001457635.1 836213 39 6730_8#5 SMRU725-sc-2011-01-27-1060914 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025066 1313 GCA_001158225.1 Generic.1.0 89.01 SRA GCA_001158225.1 category_na live 2018-03-09T09:53:03Z SMRU725 PRJEB2393 Annotation submitted by SC SC SC 58 2018-03-09T09:53:03Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRBG01 2008-09-08 SMRU725 6.10 2011-11-02T10:12:00Z Prokka current 58 SMRU725-sc-2011-01-27-1060914 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRBG01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU725 species_match 98.76 SAMEA2626866 8 Streptococcus pneumoniae 91.53 Streptococcus pneumoniae 1313 PRJEB6332 10 current na 125880 type Streptococcus pneumoniae 2017-06-27 24F 24F species Homo sapiens 2050 Streptococcus pneumoniae ERS496776 SC 2013-03-07 v1.2.4 2014-10-29T11:14:18.473 99.38 2092909 91.53 1313 2096 2017-06-24T16:11:32.000 2096659 75386 2092906 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900195065.1 type Nasophaynx 98.87 OK 39.5 Streptococcus pneumoniae 91.377 https://www.ncbi.nlm.nih.gov/nuccore/FZDX00000000.1 2014-10-15 GCA_900195065.1 haploid ERS496776 87.3 0.57 46 2017-06-28T08:06:41 GCA_053203845.1 827658 46 13681_1#31 United Kingdom UOS_7144-sc-1922706; 13681_131 1313 GCF_900195065.1 Generic.1.0 87.3 SRA Sample Description GCF_900195065.1 category_na live 2017-06-22 3063STDY5801807 PRJEB6332 GCF_900195065.1-RS_2025_08_30 SC 31 1922706 2017-06-23T00:00:00.000 UOS_7144 https://www.ncbi.nlm.nih.gov/Traces/wgs/FZDX01 2013-03-07 3063STDY5801807 Prokka current 31 ERS496776 Generic Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease FZDX01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 3063STDY5801807 species_match 98.87 SAMEA2626866 8 Streptococcus pneumoniae 91.53 Streptococcus pneumoniae 1313 PRJEB6332 10 current na Best-placed reference protein set; GeneMarkS-2+ 125880 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-30 24F 24F species Homo sapiens 1946 Streptococcus pneumoniae ERS496776 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2013-03-07 v1.2.4 2014-10-29T11:14:18.473 99.38 2092909 91.53 1313 2152 2017-06-24T16:11:32.000 2096659 75386 2092906 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 156 EBI 100 GCA_053203845.1 GCF_900195065.1-RS_2025_08_30 SLX Streptococcus pneumoniae GCF_900195065.1 type Nasophaynx 98.87 OK 39.5 Streptococcus pneumoniae 91.377 https://www.ncbi.nlm.nih.gov/nuccore/FZDX00000000.1 2014-10-15 GCF_900195065.1 haploid ERS496776 87.3 0.57 46 2017-06-28T08:06:41 GCA_053203845.1 827658 50 13681_1#31 United Kingdom UOS_7144-sc-1922706; 13681_131 1313 GCA_900195065.1 Generic.1.0 87.3 SRA Sample Description GCA_900195065.1 category_na live 2017-06-22 3063STDY5801807 PRJEB6332 Annotation submitted by SC SC 31 1922706 2017-06-23T00:00:00.000 UOS_7144 https://www.ncbi.nlm.nih.gov/Traces/wgs/FZDX01 2013-03-07 3063STDY5801807 6.10 Prokka current 31 ERS496776 Generic Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease FZDX01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 3063STDY5801807 species_match 98.87 SAMEA1024750 10 Streptococcus pneumoniae 88.28 Streptococcus pneumoniae 1313 PRJEB2393 11 current na 72220 type Streptococcus pneumoniae 2015-07-18 24F 24F species Homo sapiens 2088 Streptococcus pneumoniae Streptococcus pneumoniae ERS020172 SC 2008-08-15 v1.2.4 2012-01-20T19:49:43.803 98.26 2125920 88.28 1313 2124 2024-02-06T09:03:50.000 2125956 71971 2125889 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001205515.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 13.2962 https://www.ncbi.nlm.nih.gov/nuccore/CQZE00000000.1 2011-11-02T10:11:58Z GCA_001205515.1 haploid public SMRU662-sc-2011-01-27-1060851 88.91 0.97 65 2015-07-28T08:11:04 GCA_001457635.1 837734 36 6730_5#14 SMRU662-sc-2011-01-27-1060851 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024750 1313 GCF_001205515.1 Generic.1.0 88.91 SRA GCF_001205515.1 category_na live 2018-03-09T12:03:08Z SMRU662 PRJEB2393 GCF_001205515.1-RS_2026_01_24 SC SC 63 2018-03-09T12:03:08Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQZE01 2008-08-15 SMRU662 2011-11-02T10:11:58Z Prokka current 63 SMRU662-sc-2011-01-27-1060851 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQZE01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU662 species_match 98.76 SAMEA1024750 10 Streptococcus pneumoniae 88.28 Streptococcus pneumoniae 1313 PRJEB2393 11 current na Best-placed reference protein set; GeneMarkS-2+ 72220 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 24F 24F species Homo sapiens 2020 Streptococcus pneumoniae Streptococcus pneumoniae ERS020172 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-08-15 v1.2.4 2012-01-20T19:49:43.803 98.26 2125920 88.28 1313 2235 2024-02-06T09:03:50.000 2125956 71971 2125889 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 177 EBI 100 GCA_001457635.1 GCF_001205515.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_001205515.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 13.2962 https://www.ncbi.nlm.nih.gov/nuccore/CQZE00000000.1 2011-11-02T10:11:58Z GCF_001205515.1 haploid public SMRU662-sc-2011-01-27-1060851 88.91 0.97 65 2015-07-28T08:11:04 GCA_001457635.1 837734 38 6730_5#14 SMRU662-sc-2011-01-27-1060851 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024750 1313 GCA_001205515.1 Generic.1.0 88.91 SRA GCA_001205515.1 category_na live 2018-03-09T12:03:08Z SMRU662 PRJEB2393 Annotation submitted by SC SC SC 63 2018-03-09T12:03:08Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQZE01 2008-08-15 SMRU662 6.10 2011-11-02T10:11:58Z Prokka current 63 SMRU662-sc-2011-01-27-1060851 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQZE01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU662 species_match 98.76 SAMEA1024558 9 Streptococcus pneumoniae 91.79 Streptococcus pneumoniae 1313 PRJEB2393 9 current na 76508 type Streptococcus pneumoniae 2015-07-17 33C 33C species Homo sapiens 1994 Streptococcus pneumoniae Streptococcus pneumoniae ERS020650 SC 2009-01-06 v1.2.4 2012-01-20T19:55:01.210 99.26 2066173 91.79 1313 2035 2024-02-05T16:33:08.000 2066192 76508 2066159 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001106905.1 type nasopharynx 98.83 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CRNJ00000000.1 2011-11-15T09:28:19Z GCA_001106905.1 haploid public SMRU1140-sc-2011-01-27-1061353 86.43 3.19 70 2015-07-28T08:11:27 GCA_053203845.1 820167 41 6755_4#12 SMRU1140-sc-2011-01-27-1061353 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024558 1313 GCF_001106905.1 Generic.1.0 86.43 SRA GCF_001106905.1 category_na live 2018-03-09T09:53:07Z SMRU1140 PRJEB2393 GCF_001106905.1-RS_2026_01_15 SC SC 69 2018-03-09T09:53:07Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRNJ01 2009-01-06 SMRU1140 2011-11-15T09:28:19Z Prokka current 69 SMRU1140-sc-2011-01-27-1061353 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRNJ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1140 species_match 98.83 SAMEA1024558 9 Streptococcus pneumoniae 91.79 Streptococcus pneumoniae 1313 PRJEB2393 9 current na Best-placed reference protein set; GeneMarkS-2+ 76508 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-15 33C 33C species Homo sapiens 1926 Streptococcus pneumoniae Streptococcus pneumoniae ERS020650 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-01-06 v1.2.4 2012-01-20T19:55:01.210 99.26 2066173 91.79 1313 2125 2024-02-05T16:33:08.000 2066192 76508 2066159 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 156 EBI 100 GCA_053203845.1 GCF_001106905.1-RS_2026_01_15 SLX Streptococcus pneumoniae GCF_001106905.1 type nasopharynx 98.83 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CRNJ00000000.1 2011-11-15T09:28:19Z GCF_001106905.1 haploid public SMRU1140-sc-2011-01-27-1061353 86.43 3.19 70 2015-07-28T08:11:27 GCA_053203845.1 820167 43 6755_4#12 SMRU1140-sc-2011-01-27-1061353 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024558 1313 GCA_001106905.1 Generic.1.0 86.43 SRA GCA_001106905.1 category_na live 2018-03-09T09:53:07Z SMRU1140 PRJEB2393 Annotation submitted by SC SC SC 69 2018-03-09T09:53:07Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRNJ01 2009-01-06 SMRU1140 6.10 2011-11-15T09:28:19Z Prokka current 69 SMRU1140-sc-2011-01-27-1061353 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRNJ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1140 species_match 98.83 SAMEA1025131 10 Streptococcus pneumoniae 90.39 Streptococcus pneumoniae 1313 PRJEB2395 10 current na 79690 type Streptococcus pneumoniae 2015-07-18 33C 33C species Homo sapiens 2039 Streptococcus pneumoniae Streptococcus pneumoniae ERS021216 SC 2009-07-07 v1.2.4 2012-01-20T20:01:16.130 99.26 2107802 90.39 1313 2082 2024-02-05T16:28:14.000 2107812 74452 2107793 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001199395.1 type nasopharynx 98.82 OK 40.0 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CRUU00000000.1 2011-11-29T12:03:47Z GCA_001199395.1 haploid public SMRU1706-sc-2011-01-27-1061919 86.82 4.5 58 2015-07-28T08:11:56 GCA_053203845.1 837959 43 6805_6#2 SMRU1706-sc-2011-01-27-1061919 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025131 1313 GCF_001199395.1 Generic.1.0 86.82 SRA GCF_001199395.1 category_na live 2018-03-09T09:53:03Z SMRU1706 PRJEB2395 GCF_001199395.1-RS_2026_01_21 SC SC 57 2018-03-09T09:53:03Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRUU01 2009-07-07 SMRU1706 2011-11-29T12:03:47Z Prokka current 57 SMRU1706-sc-2011-01-27-1061919 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRUU01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1706 species_match 98.82 SAMEA1025131 10 Streptococcus pneumoniae 90.39 Streptococcus pneumoniae 1313 PRJEB2395 10 current na Best-placed reference protein set; GeneMarkS-2+ 79690 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-21 33C 33C species Homo sapiens 1952 Streptococcus pneumoniae Streptococcus pneumoniae ERS021216 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-07-07 v1.2.4 2012-01-20T20:01:16.130 99.26 2107802 90.39 1313 2166 2024-02-05T16:28:14.000 2107812 74452 2107793 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 169 EBI 100 GCA_053203845.1 GCF_001199395.1-RS_2026_01_21 SLX Streptococcus pneumoniae GCF_001199395.1 type nasopharynx 98.82 OK 40.0 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CRUU00000000.1 2011-11-29T12:03:47Z GCF_001199395.1 haploid public SMRU1706-sc-2011-01-27-1061919 86.82 4.5 58 2015-07-28T08:11:56 GCA_053203845.1 837959 45 6805_6#2 SMRU1706-sc-2011-01-27-1061919 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025131 1313 GCA_001199395.1 Generic.1.0 86.82 SRA GCA_001199395.1 category_na live 2018-03-09T09:53:03Z SMRU1706 PRJEB2395 Annotation submitted by SC SC SC 57 2018-03-09T09:53:03Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRUU01 2009-07-07 SMRU1706 6.10 2011-11-29T12:03:47Z Prokka current 57 SMRU1706-sc-2011-01-27-1061919 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRUU01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1706 species_match 98.82 SAMEA1023793 9 Streptococcus pneumoniae 89.03 Streptococcus pneumoniae 1313 PRJEB2357 9 current na 84223 type Streptococcus pneumoniae 2015-07-11 33B 33B species Homo sapiens 2125 Streptococcus pneumoniae Streptococcus pneumoniae ERS019397 SC 2008-03-31 v1.2.4 2012-01-20T19:43:41.880 99.15 2149013 89.03 1313 2165 2024-02-05T16:19:18.000 2149035 73986 2148996 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001132025.1 type nasopharynx 98.69 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CKNK00000000.1 2011-10-25T09:28:11Z GCA_001132025.1 haploid public SMRU239-sc-2011-01-27-1060428 87.19 4.33 56 2016-01-29T08:05:28 GCA_053203845.1 852430 40 6664_1#23 SMRU239-sc-2011-01-27-1060428 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023793 1313 GCF_001132025.1 Generic.1.0 87.19 SRA GCF_001132025.1 category_na live 2018-03-09T09:52:56Z SMRU239 PRJEB2357 GCF_001132025.1-RS_2026_01_20 SC SC 54 2018-03-09T09:52:56Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKNK01 2008-03-31 33B 2011-10-25T09:28:11Z Prokka current 54 SMRU239-sc-2011-01-27-1060428 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKNK01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU239 species_match 98.69 SAMEA1023793 9 Streptococcus pneumoniae 89.03 Streptococcus pneumoniae 1313 PRJEB2357 9 current na Best-placed reference protein set; GeneMarkS-2+ 84223 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-20 33B 33B species Homo sapiens 2038 Streptococcus pneumoniae Streptococcus pneumoniae ERS019397 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-03-31 v1.2.4 2012-01-20T19:43:41.880 99.15 2149013 89.03 1313 2248 2024-02-05T16:19:18.000 2149035 73986 2148996 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 167 EBI 100 GCA_053203845.1 GCF_001132025.1-RS_2026_01_20 SLX Streptococcus pneumoniae GCF_001132025.1 type nasopharynx 98.69 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CKNK00000000.1 2011-10-25T09:28:11Z GCF_001132025.1 haploid public SMRU239-sc-2011-01-27-1060428 87.19 4.33 56 2016-01-29T08:05:28 GCA_053203845.1 852430 43 6664_1#23 SMRU239-sc-2011-01-27-1060428 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023793 1313 GCA_001132025.1 Generic.1.0 87.19 SRA GCA_001132025.1 category_na live 2018-03-09T09:52:56Z SMRU239 PRJEB2357 Annotation submitted by SC SC SC 54 2018-03-09T09:52:56Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKNK01 2008-03-31 SMRU239 6.10 2011-10-25T09:28:11Z Prokka current 54 SMRU239-sc-2011-01-27-1060428 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKNK01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU239 species_match 98.69 SAMEA1025962 9 Streptococcus pneumoniae 93.34 Streptococcus pneumoniae 1313 PRJEB2397 9 current na 73921 type Streptococcus pneumoniae 2015-07-13 33C 33C species Homo sapiens 1983 Streptococcus pneumoniae Streptococcus pneumoniae ERS021333 SC 2009-08-17 v1.2.4 2012-01-20T20:02:38.173 99.26 2040931 93.34 1313 2033 2024-02-05T16:29:45.000 2040969 73921 2040898 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001118465.1 type nasopharynx 98.84 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CLAD00000000.1 2011-12-13T09:59:02Z GCA_001118465.1 haploid public SMRU1823-sc-2011-01-27-1062036 86.82 0.62 60 2015-07-28T08:12:19 GCA_053203845.1 809383 50 6840_3#23 SMRU1823-sc-2011-01-27-1062036 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025962 1313 GCF_001118465.1 Generic.1.0 86.82 SRA GCF_001118465.1 category_na live 2018-03-09T09:53:04Z SMRU1823 PRJEB2397 GCF_001118465.1-RS_2026_01_21 SC SC 59 2018-03-09T09:53:04Z 2011-12-13T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLAD01 2009-08-17 SMRU1823 2011-12-13T09:59:02Z Prokka current 59 SMRU1823-sc-2011-01-27-1062036 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLAD01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU1823 species_match 98.84 SAMEA1025962 9 Streptococcus pneumoniae 93.34 Streptococcus pneumoniae 1313 PRJEB2397 9 current na Best-placed reference protein set; GeneMarkS-2+ 73921 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-21 33C 33C species Homo sapiens 1896 Streptococcus pneumoniae Streptococcus pneumoniae ERS021333 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-08-17 v1.2.4 2012-01-20T20:02:38.173 99.26 2040931 93.34 1313 2122 2024-02-05T16:29:45.000 2040969 73921 2040898 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 171 EBI 100 GCA_053203845.1 GCF_001118465.1-RS_2026_01_21 SLX Streptococcus pneumoniae GCF_001118465.1 type nasopharynx 98.84 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CLAD00000000.1 2011-12-13T09:59:02Z GCF_001118465.1 haploid public SMRU1823-sc-2011-01-27-1062036 86.82 0.62 60 2015-07-28T08:12:19 GCA_053203845.1 809383 55 6840_3#23 SMRU1823-sc-2011-01-27-1062036 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025962 1313 GCA_001118465.1 Generic.1.0 86.82 SRA GCA_001118465.1 category_na live 2018-03-09T09:53:04Z SMRU1823 PRJEB2397 Annotation submitted by SC SC SC 59 2018-03-09T09:53:04Z 2011-12-13T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLAD01 2009-08-17 SMRU1823 6.10 2011-12-13T09:59:02Z Prokka current 59 SMRU1823-sc-2011-01-27-1062036 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLAD01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU1823 species_match 98.84 SAMEA1025631 9 Streptococcus pneumoniae 89.43 Streptococcus pneumoniae 1313 PRJEB2395 10 current na 70086 type Streptococcus pneumoniae 2015-07-18 33B 33B species Homo sapiens 2153 Streptococcus pneumoniae Streptococcus pneumoniae ERS020771 SC 2009-02-20 v1.2.4 2012-01-20T19:56:22.626 99.15 2145642 89.43 1313 2192 2024-02-05T16:12:13.000 2145663 70086 2145633 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001158605.1 type nasopharynx 98.66 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CRGP00000000.1 2011-11-15T17:01:00Z GCA_001158605.1 haploid public SMRU1261-sc-2011-01-27-1061474 90.9 0.72 74 2015-07-28T08:11:33 GCA_001457635.1 849939 39 6736_6#13 SMRU1261-sc-2011-01-27-1061474 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025631 1313 GCF_001158605.1 Generic.1.0 90.9 SRA GCF_001158605.1 category_na live 2018-03-09T09:52:52Z SMRU1261 PRJEB2395 GCF_001158605.1-RS_2026_02_02 SC SC 72 2018-03-09T09:52:52Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRGP01 2009-02-20 SMRU1261 2011-11-15T17:01:00Z Prokka current 72 SMRU1261-sc-2011-01-27-1061474 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRGP01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1261 species_match 98.66 SAMEA1025631 9 Streptococcus pneumoniae 89.43 Streptococcus pneumoniae 1313 PRJEB2395 10 current na Best-placed reference protein set; GeneMarkS-2+ 70086 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-02 33B 33B species Homo sapiens 2077 Streptococcus pneumoniae Streptococcus pneumoniae ERS020771 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-02-20 v1.2.4 2012-01-20T19:56:22.626 99.15 2145642 89.43 1313 2285 2024-02-05T16:12:13.000 2145663 70086 2145633 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 166 EBI 100 GCA_001457635.1 GCF_001158605.1-RS_2026_02_02 SLX Streptococcus pneumoniae GCF_001158605.1 type nasopharynx 98.66 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CRGP00000000.1 2011-11-15T17:01:00Z GCF_001158605.1 haploid public SMRU1261-sc-2011-01-27-1061474 90.9 0.72 74 2015-07-28T08:11:33 GCA_001457635.1 849939 42 6736_6#13 SMRU1261-sc-2011-01-27-1061474 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025631 1313 GCA_001158605.1 Generic.1.0 90.9 SRA GCA_001158605.1 category_na live 2018-03-09T09:52:52Z SMRU1261 PRJEB2395 Annotation submitted by SC SC SC 72 2018-03-09T09:52:52Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRGP01 2009-02-20 SMRU1261 6.10 2011-11-15T17:01:00Z Prokka current 72 SMRU1261-sc-2011-01-27-1061474 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRGP01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1261 species_match 98.66 SAMEA1025367 10 Streptococcus pneumoniae 91.0 Streptococcus pneumoniae 1313 PRJEB2395 11 current na 71251 type Streptococcus pneumoniae 2015-07-18 33B 33B species Homo sapiens 2087 Streptococcus pneumoniae Streptococcus pneumoniae ERS021180 SC 2009-06-22 v1.2.4 2012-01-20T20:00:52.820 99.13 2100072 91.0 1313 2129 2024-02-06T09:04:05.000 2100291 67841 2100051 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001159645.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 63.7667 https://www.ncbi.nlm.nih.gov/nuccore/CRTG00000000.1 2011-11-29T12:03:49Z GCA_001159645.1 haploid public SMRU1670-sc-2011-01-27-1061883 87.09 0.94 64 2015-07-28T08:11:54 GCA_053203845.1 831607 42 6805_4#14 SMRU1670-sc-2011-01-27-1061883 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025367 1313 GCF_001159645.1 Generic.1.0 87.09 SRA GCF_001159645.1 category_na live 2018-03-09T12:07:53Z SMRU1670 PRJEB2395 GCF_001159645.1-RS_2026_01_24 SC SC 57 2018-03-09T12:07:53Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRTG01 2009-06-22 SMRU1670 2011-11-29T12:03:49Z Prokka current 57 SMRU1670-sc-2011-01-27-1061883 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRTG01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1670 species_match 98.7 SAMEA1025367 10 Streptococcus pneumoniae 91.0 Streptococcus pneumoniae 1313 PRJEB2395 11 current na Best-placed reference protein set; GeneMarkS-2+ 71251 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 33B 33B species Homo sapiens 1988 Streptococcus pneumoniae Streptococcus pneumoniae ERS021180 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-06-22 v1.2.4 2012-01-20T20:00:52.820 99.13 2100072 91.0 1313 2205 2024-02-06T09:04:05.000 2100291 67841 2100051 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 172 EBI 100 GCA_053203845.1 GCF_001159645.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_001159645.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 63.7667 https://www.ncbi.nlm.nih.gov/nuccore/CRTG00000000.1 2011-11-29T12:03:49Z GCF_001159645.1 haploid public SMRU1670-sc-2011-01-27-1061883 87.09 0.94 64 2015-07-28T08:11:54 GCA_053203845.1 831607 45 6805_4#14 SMRU1670-sc-2011-01-27-1061883 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025367 1313 GCA_001159645.1 Generic.1.0 87.09 SRA GCA_001159645.1 category_na live 2018-03-09T12:07:53Z SMRU1670 PRJEB2395 Annotation submitted by SC SC SC 57 2018-03-09T12:07:53Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRTG01 2009-06-22 SMRU1670 6.10 2011-11-29T12:03:49Z Prokka current 57 SMRU1670-sc-2011-01-27-1061883 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRTG01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1670 species_match 98.7 SAMEA1025159 11 Streptococcus pneumoniae 88.5 Streptococcus pneumoniae 1313 PRJEB2395 11 current na 67114 type Streptococcus pneumoniae 2015-07-18 33B 33B species Homo sapiens 2127 Streptococcus pneumoniae Streptococcus pneumoniae ERS020914 SC 2009-04-01 v1.2.4 2012-01-20T19:57:54.483 99.15 2153608 88.5 1313 2165 2024-02-05T16:14:44.000 2153608 67114 2153598 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001208485.1 type nasopharynx 98.69 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CQVQ00000000.1 2011-11-15T09:28:19Z GCA_001208485.1 haploid public SMRU1404-sc-2011-01-27-1061617 86.86 2.19 67 2015-07-28T08:11:40 GCA_053203845.1 852382 38 6710_8#12 SMRU1404-sc-2011-01-27-1061617 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025159 1313 GCF_001208485.1 Generic.1.0 86.86 SRA GCF_001208485.1 category_na live 2018-03-09T09:52:53Z SMRU1404 PRJEB2395 GCF_001208485.1-RS_2026_01_16 SC SC 67 2018-03-09T09:52:53Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQVQ01 2009-04-01 SMRU1404 2011-11-15T09:28:19Z Prokka current 67 SMRU1404-sc-2011-01-27-1061617 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQVQ01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1404 species_match 98.69 SAMEA1025159 11 Streptococcus pneumoniae 88.5 Streptococcus pneumoniae 1313 PRJEB2395 11 current na Best-placed reference protein set; GeneMarkS-2+ 67114 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-16 33B 33B species Homo sapiens 2064 Streptococcus pneumoniae Streptococcus pneumoniae ERS020914 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-01 v1.2.4 2012-01-20T19:57:54.483 99.15 2153608 88.5 1313 2270 2024-02-05T16:14:44.000 2153608 67114 2153598 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 165 EBI 100 GCA_053203845.1 GCF_001208485.1-RS_2026_01_16 SLX Streptococcus pneumoniae GCF_001208485.1 type nasopharynx 98.69 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CQVQ00000000.1 2011-11-15T09:28:19Z GCF_001208485.1 haploid public SMRU1404-sc-2011-01-27-1061617 86.86 2.19 67 2015-07-28T08:11:40 GCA_053203845.1 852382 41 6710_8#12 SMRU1404-sc-2011-01-27-1061617 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025159 1313 GCA_001208485.1 Generic.1.0 86.86 SRA GCA_001208485.1 category_na live 2018-03-09T09:52:53Z SMRU1404 PRJEB2395 Annotation submitted by SC SC SC 67 2018-03-09T09:52:53Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQVQ01 2009-04-01 SMRU1404 6.10 2011-11-15T09:28:19Z Prokka current 67 SMRU1404-sc-2011-01-27-1061617 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQVQ01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1404 species_match 98.69 SAMEA1025490 11 Streptococcus pneumoniae 90.83 Streptococcus pneumoniae 1313 PRJEB2395 11 current na 66175 type Streptococcus pneumoniae 2015-07-18 33B 33B species Homo sapiens 2057 Streptococcus pneumoniae Streptococcus pneumoniae ERS020781 SC 2009-02-20 v1.2.4 2012-01-20T19:56:30.083 99.1 2096283 90.83 1313 2098 2024-02-05T16:24:01.000 2096283 66175 2096264 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001198975.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CRGS00000000.1 2011-11-15T17:01:01Z GCA_001198975.1 haploid public SMRU1271-sc-2011-01-27-1061484 86.77 0.94 68 2015-07-28T08:11:34 GCA_053203845.1 830129 41 6736_6#23 SMRU1271-sc-2011-01-27-1061484 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025490 1313 GCF_001198975.1 Generic.1.0 86.77 SRA GCF_001198975.1 category_na live 2018-03-09T09:53:00Z SMRU1271 PRJEB2395 GCF_001198975.1-RS_2026_01_19 SC SC 68 2018-03-09T09:53:00Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRGS01 2009-02-20 SMRU1271 2011-11-15T17:01:01Z Prokka current 68 SMRU1271-sc-2011-01-27-1061484 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRGS01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1271 species_match 98.71 SAMEA1025490 11 Streptococcus pneumoniae 90.83 Streptococcus pneumoniae 1313 PRJEB2395 11 current na Best-placed reference protein set; GeneMarkS-2+ 66175 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 33B 33B species Homo sapiens 1985 Streptococcus pneumoniae Streptococcus pneumoniae ERS020781 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-02-20 v1.2.4 2012-01-20T19:56:30.083 99.1 2096283 90.83 1313 2196 2024-02-05T16:24:01.000 2096283 66175 2096264 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 168 EBI 100 GCA_053203845.1 GCF_001198975.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001198975.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CRGS00000000.1 2011-11-15T17:01:01Z GCF_001198975.1 haploid public SMRU1271-sc-2011-01-27-1061484 86.77 0.94 68 2015-07-28T08:11:34 GCA_053203845.1 830129 43 6736_6#23 SMRU1271-sc-2011-01-27-1061484 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025490 1313 GCA_001198975.1 Generic.1.0 86.77 SRA GCA_001198975.1 category_na live 2018-03-09T09:53:00Z SMRU1271 PRJEB2395 Annotation submitted by SC SC SC 68 2018-03-09T09:53:00Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRGS01 2009-02-20 SMRU1271 6.10 2011-11-15T17:01:01Z Prokka current 68 SMRU1271-sc-2011-01-27-1061484 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRGS01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1271 species_match 98.71 SAMEA1026839 11 Streptococcus pneumoniae 88.39 Streptococcus pneumoniae 1313 PRJEB2417 11 current na 66099 type Streptococcus pneumoniae 2017-06-29 33D 33D species Homo sapiens 2118 Streptococcus pneumoniae ERS023256 SC 2009-01-20 v1.2.4 2011-09-23T19:13:45.283 98.4 2139253 88.39 1313 2155 2017-06-24T15:40:39.000 2139253 66099 2139250 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900191025.1 type Nasophaynx 98.8 OK 39.5 Streptococcus pneumoniae 15.9145 https://www.ncbi.nlm.nih.gov/nuccore/FYOD00000000.1 2011-09-20 GCA_900191025.1 haploid ERS023256 86.17 0.89 56 2017-06-28T08:06:17 GCA_053203845.1 841715 37 6512_2#10 United Kingdom UoS3138-sc-2011-02-14-1078310; 6512_210 1313 GCF_900191025.1 Generic.1.0 86.17 SRA Sample Description GCF_900191025.1 category_na live 2017-06-22 UoS3138 PRJEB2417 GCF_900191025.1-RS_2025_08_21 SC 56 1078310 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYOD01 2009-01-20 UoS3138 Prokka current 56 ERS023256 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYOD01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-29 UoS3138 species_match 98.8 SAMEA1026839 11 Streptococcus pneumoniae 88.39 Streptococcus pneumoniae 1313 PRJEB2417 11 current na Best-placed reference protein set; GeneMarkS-2+ 66099 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-21 33D 33D species Homo sapiens 2016 Streptococcus pneumoniae ERS023256 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-01-20 v1.2.4 2011-09-23T19:13:45.283 98.4 2139253 88.39 1313 2235 2017-06-24T15:40:39.000 2139253 66099 2139250 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 179 EBI 100 GCA_053203845.1 GCF_900191025.1-RS_2025_08_21 SLX Streptococcus pneumoniae GCF_900191025.1 type Nasophaynx 98.8 OK 39.5 Streptococcus pneumoniae 15.9145 https://www.ncbi.nlm.nih.gov/nuccore/FYOD00000000.1 2011-09-20 GCF_900191025.1 haploid ERS023256 86.17 0.89 56 2017-06-28T08:06:17 GCA_053203845.1 841715 40 6512_2#10 United Kingdom UoS3138-sc-2011-02-14-1078310; 6512_210 1313 GCA_900191025.1 Generic.1.0 86.17 SRA Sample Description GCA_900191025.1 category_na live 2017-06-22 UoS3138 PRJEB2417 Annotation submitted by SC SC 56 1078310 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYOD01 2009-01-20 UoS3138 6.10 Prokka current 56 ERS023256 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYOD01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-29 UoS3138 species_match 98.8 SAMEA1028810 10 Streptococcus pneumoniae 87.04 Streptococcus pneumoniae 1313 PRJEB2479 11 current na 66887 type Streptococcus pneumoniae 2015-07-13 33B 33B species Homo sapiens 2204 Streptococcus pneumoniae Streptococcus pneumoniae ERS022099 SC 2010-04-07 v1.2.4 2012-01-20T20:11:37.023 99.15 2212684 87.04 1313 2247 2024-02-06T09:04:13.000 2212721 64795 2212666 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001089505.1 type nasopharynx 98.67 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CLSF00000000.1 2012-01-16T15:10:28Z GCA_001089505.1 haploid public SMRU2589-sc-2011-01-27-1062802 87.76 2.25 75 2015-07-28T08:12:54 GCA_053203845.1 875925 43 6972_3#21 SMRU2589-sc-2011-01-27-1062802 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028810 1313 GCF_001089505.1 Generic.1.0 87.76 SRA GCF_001089505.1 category_na live 2018-03-09T12:10:04Z SMRU2589 PRJEB2479 GCF_001089505.1-RS_2026_02_04 SC SC 72 2018-03-09T12:10:04Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLSF01 2010-04-07 SMRU2589 2012-01-16T15:10:28Z Prokka current 72 SMRU2589-sc-2011-01-27-1062802 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLSF01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2589 species_match 98.67 SAMEA1028810 10 Streptococcus pneumoniae 87.04 Streptococcus pneumoniae 1313 PRJEB2479 11 current na Best-placed reference protein set; GeneMarkS-2+ 66887 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-04 33B 33B species Homo sapiens 2123 Streptococcus pneumoniae Streptococcus pneumoniae ERS022099 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-04-07 v1.2.4 2012-01-20T20:11:37.023 99.15 2212684 87.04 1313 2333 2024-02-06T09:04:13.000 2212721 64795 2212666 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 165 EBI 100 GCA_053203845.1 GCF_001089505.1-RS_2026_02_04 SLX Streptococcus pneumoniae GCF_001089505.1 type nasopharynx 98.67 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CLSF00000000.1 2012-01-16T15:10:28Z GCF_001089505.1 haploid public SMRU2589-sc-2011-01-27-1062802 87.76 2.25 75 2015-07-28T08:12:54 GCA_053203845.1 875925 45 6972_3#21 SMRU2589-sc-2011-01-27-1062802 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028810 1313 GCA_001089505.1 Generic.1.0 87.76 SRA GCA_001089505.1 category_na live 2018-03-09T12:10:04Z SMRU2589 PRJEB2479 Annotation submitted by SC SC SC 72 2018-03-09T12:10:04Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLSF01 2010-04-07 SMRU2589 6.10 2012-01-16T15:10:28Z Prokka current 72 SMRU2589-sc-2011-01-27-1062802 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLSF01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2589 species_match 98.67 SAMEA2336028 4 Streptococcus pneumoniae 92.18 Streptococcus pneumoniae 1313 PRJEB3084 4 current na 252892 type Streptococcus pneumoniae 2019-05-12 33F 33F species Homo sapiens 2045 Streptococcus pneumoniae Streptococcus pneumoniae ERS394222 SC 2009 v1.2.4 2014-05-20T08:07:33.910 98.88 2065330 92.18 1313 2091 Streptococcus pneumoniae 2024-02-06T15:54:55.000 2067172 250344 2065330 blood Homo sapiens Streptococcus pneumoniae IPD ST2705 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900059695.2 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 39.3061 https://www.ncbi.nlm.nih.gov/nuccore/FHLR00000000.2 2014-05-19T10:21:07Z GCA_900059695.2 haploid public 2010216137-sc-1810956 86.76 0.31 26 2015-08-10T19:29:24 GCA_053203845.1 817730 46 12291_5#6 2010216137-sc-1810956 USA 12291_5#6 SAMEA2336028 1313 GCF_900059695.2 Generic.1.0 86.76 SRA GCF_900059695.2 category_na live 2019-04-18T15:39:20Z GPSC3 PRJEB3084 GCF_900059695.2-RS_2025_12_31 SC SC 19 1810956 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2010216137 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHLR02 2009 2245STDY5699121 2014-05-19T10:21:07Z Prokka current 19 2010216137-sc-1810956 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHLR02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC3 species_match 98.84 SAMEA2336028 4 Streptococcus pneumoniae 92.18 Streptococcus pneumoniae 1313 PRJEB3084 4 current na Best-placed reference protein set; GeneMarkS-2+ 252892 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-31 33F 33F species Homo sapiens 1935 Streptococcus pneumoniae Streptococcus pneumoniae ERS394222 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-05-20T08:07:33.910 98.88 2065330 92.18 1313 2154 Streptococcus pneumoniae 2024-02-06T15:54:55.000 2067172 250344 2065330 blood Homo sapiens Streptococcus pneumoniae IPD 168 ST2705 EBI 100 GCA_053203845.1 GCF_900059695.2-RS_2025_12_31 SLX Streptococcus pneumoniae GCF_900059695.2 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 39.3061 https://www.ncbi.nlm.nih.gov/nuccore/FHLR00000000.2 2014-05-19T10:21:07Z GCF_900059695.2 haploid public 2010216137-sc-1810956 86.76 0.31 26 2015-08-10T19:29:24 GCA_053203845.1 817730 51 12291_5#6 2010216137-sc-1810956 USA 12291_5#6 SAMEA2336028 1313 GCA_900059695.2 Generic.1.0 86.76 SRA GCA_900059695.2 category_na live 2019-04-18T15:39:20Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 19 1810956 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2010216137 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHLR02 2009 GPSC3 substr. ST2705 6.10 2014-05-19T10:21:07Z Prokka current 19 2010216137-sc-1810956 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHLR02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC3 species_match 98.84 SAMEA2238678 3 Streptococcus pneumoniae 92.92 Streptococcus pneumoniae 1313 PRJEB4909 4 current na 262814 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1971 Streptococcus pneumoniae Streptococcus pneumoniae ERS367490 SC 2006/2012 v1.2.4 2014-05-07T08:34:48.360 98.94 2020407 92.92 1313 2015 2024-02-06T05:21:02.000 2023606 180228 2020403 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900023495.1 type CSF 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FEEH00000000.1 2014-03-18T09:35:30Z GCA_900023495.1 haploid public 2091775-sc-2013-11-05T12:00:32Z-1750040 85.55 0.31 27 2015-08-10T19:24:22 GCA_053203845.1 801168 44 11861_2#17 2091775-sc-2013-11-05T12:00:32Z-1750040 Netherlands 11861_2#17 SAMEA2238678 1313 GCF_900023495.1 Generic.1.0 85.55 SRA GCF_900023495.1 category_na live 2018-03-09T10:29:35Z 2842STDY5644051 PRJEB4909 GCF_900023495.1-RS_2026_01_25 SC SC 14 1750040 2018-03-09T10:29:35Z 2014-03-18T00:00:00.000 2091775 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEEH01 2006/2012 2842STDY5644051 2014-03-18T09:35:30Z Prokka current 14 2091775-sc-2013-11-05T12:00:32Z-1750040 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEEH01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644051 species_match 98.8 SAMEA2238678 3 Streptococcus pneumoniae 92.92 Streptococcus pneumoniae 1313 PRJEB4909 4 current na Best-placed reference protein set; GeneMarkS-2+ 262814 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1878 Streptococcus pneumoniae Streptococcus pneumoniae ERS367490 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:48.360 98.94 2020407 92.92 1313 2085 2024-02-06T05:21:02.000 2023606 180228 2020403 CSF Homo sapiens Streptococcus pneumoniae Disease 158 EBI 100 GCA_053203845.1 GCF_900023495.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900023495.1 type CSF 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FEEH00000000.1 2014-03-18T09:35:30Z GCF_900023495.1 haploid public 2091775-sc-2013-11-05T12:00:32Z-1750040 85.55 0.31 27 2015-08-10T19:24:22 GCA_053203845.1 801168 49 11861_2#17 2091775-sc-2013-11-05T12:00:32Z-1750040 Netherlands 11861_2#17 SAMEA2238678 1313 GCA_900023495.1 Generic.1.0 85.55 SRA GCA_900023495.1 category_na live 2018-03-09T10:29:35Z 2842STDY5644051 PRJEB4909 Annotation submitted by SC SC SC 14 1750040 2018-03-09T10:29:35Z 2014-03-18T00:00:00.000 2091775 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEEH01 2006/2012 2842STDY5644051 6.10 2014-03-18T09:35:30Z Prokka current 14 2091775-sc-2013-11-05T12:00:32Z-1750040 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEEH01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644051 species_match 98.8 SAMEA2521563 4 Streptococcus pneumoniae 92.4 Streptococcus pneumoniae 1313 PRJEB3084 4 current na 174900 type Streptococcus pneumoniae 2019-05-12 33F 33F species Homo sapiens 2032 Streptococcus pneumoniae Streptococcus pneumoniae ERS455103 SC 2012 v1.2.4 2014-09-17T09:08:12.920 98.86 2055210 92.4 1313 2078 Streptococcus pneumoniae 2024-02-06T15:55:06.000 2056620 174900 2055209 blood Homo sapiens Streptococcus pneumoniae IPD ST2705 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900064865.2 type blood 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 38.6659 https://www.ncbi.nlm.nih.gov/nuccore/FHQJ00000000.2 2014-09-16T09:22:33Z GCA_900064865.2 haploid public 2012215849-sc-1946855 86.54 0.31 26 2015-08-10T19:57:07 GCA_053203845.1 813973 46 13414_2#12 2012215849-sc-1946855 USA 13414_2#12 SAMEA2521563 1313 GCF_900064865.2 Generic.1.0 86.54 SRA GCF_900064865.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 GCF_900064865.2-RS_2026_01_01 SC SC 21 1946855 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012215849 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQJ02 2012 2245STDY5819529 2014-09-16T09:22:33Z Prokka current 21 2012215849-sc-1946855 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQJ02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC3 species_match 98.83 SAMEA2521563 4 Streptococcus pneumoniae 92.4 Streptococcus pneumoniae 1313 PRJEB3084 4 current na Best-placed reference protein set; GeneMarkS-2+ 174900 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-01 33F 33F species Homo sapiens 1921 Streptococcus pneumoniae Streptococcus pneumoniae ERS455103 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:12.920 98.86 2055210 92.4 1313 2146 Streptococcus pneumoniae 2024-02-06T15:55:06.000 2056620 174900 2055209 blood Homo sapiens Streptococcus pneumoniae IPD 174 ST2705 EBI 100 GCA_053203845.1 GCF_900064865.2-RS_2026_01_01 SLX Streptococcus pneumoniae GCF_900064865.2 type blood 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 38.6659 https://www.ncbi.nlm.nih.gov/nuccore/FHQJ00000000.2 2014-09-16T09:22:33Z GCF_900064865.2 haploid public 2012215849-sc-1946855 86.54 0.31 26 2015-08-10T19:57:07 GCA_053203845.1 813973 51 13414_2#12 2012215849-sc-1946855 USA 13414_2#12 SAMEA2521563 1313 GCA_900064865.2 Generic.1.0 86.54 SRA GCA_900064865.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 21 1946855 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012215849 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQJ02 2012 GPSC3 substr. ST2705 6.10 2014-09-16T09:22:33Z Prokka current 21 2012215849-sc-1946855 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQJ02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC3 species_match 98.83 SAMEA2336066 4 Streptococcus pneumoniae 94.05 Streptococcus pneumoniae 1313 PRJEB3084 5 current na 236275 type Streptococcus pneumoniae 2019-05-10 33F 33F species Homo sapiens 1959 Streptococcus pneumoniae Streptococcus pneumoniae ERS394260 SC 2009 v1.2.4 2014-05-20T08:07:36.020 98.01 2009145 94.05 1313 2005 Streptococcus pneumoniae 2024-02-06T15:54:56.000 2011401 148093 2009144 blood Homo sapiens Streptococcus pneumoniae IPD ST10145 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900059685.2 type blood 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 7.29787 https://www.ncbi.nlm.nih.gov/nuccore/FHLQ00000000.2 2014-05-19T10:21:06Z GCA_900059685.2 haploid public 2010220110-sc-1810996 86.11 0.31 26 2015-08-10T19:29:25 GCA_053203845.1 796486 46 12291_5#44 2010220110-sc-1810996 USA 12291_5#44 SAMEA2336066 1313 GCF_900059685.2 Generic.1.0 86.11 SRA GCF_900059685.2 category_na live 2019-04-18T15:39:20Z GPSC3 PRJEB3084 GCF_900059685.2-RS_2026_01_03 SC SC 17 1810996 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2010220110 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHLQ02 2009 2245STDY5699161 2014-05-19T10:21:06Z Prokka current 17 2010220110-sc-1810996 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHLQ02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC3 species_match 98.83 SAMEA2336066 4 Streptococcus pneumoniae 94.05 Streptococcus pneumoniae 1313 PRJEB3084 5 current na Best-placed reference protein set; GeneMarkS-2+ 236275 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-03 33F 33F species Homo sapiens 1876 Streptococcus pneumoniae Streptococcus pneumoniae ERS394260 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-05-20T08:07:36.020 98.01 2009145 94.05 1313 2078 Streptococcus pneumoniae 2024-02-06T15:54:56.000 2011401 148093 2009144 blood Homo sapiens Streptococcus pneumoniae IPD 151 ST10145 EBI 100 GCA_053203845.1 GCF_900059685.2-RS_2026_01_03 SLX Streptococcus pneumoniae GCF_900059685.2 type blood 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 7.29787 https://www.ncbi.nlm.nih.gov/nuccore/FHLQ00000000.2 2014-05-19T10:21:06Z GCF_900059685.2 haploid public 2010220110-sc-1810996 86.11 0.31 26 2015-08-10T19:29:25 GCA_053203845.1 796486 51 12291_5#44 2010220110-sc-1810996 USA 12291_5#44 SAMEA2336066 1313 GCA_900059685.2 Generic.1.0 86.11 SRA GCA_900059685.2 category_na live 2019-04-18T15:39:20Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 17 1810996 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2010220110 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHLQ02 2009 GPSC3 substr. ST10145 6.10 2014-05-19T10:21:06Z Prokka current 17 2010220110-sc-1810996 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHLQ02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC3 species_match 98.83 SAMEA2203886 3 Streptococcus pneumoniae 92.58 Streptococcus pneumoniae 1313 PRJEB3084 6 current na 280610 type Streptococcus pneumoniae 2019-05-11 33F 33F species Homo sapiens 2017 Streptococcus pneumoniae Streptococcus pneumoniae ERS356390 SC 2009 v1.2.4 2014-02-28T18:05:49.956 98.84 2044650 92.58 1313 2063 Streptococcus pneumoniae 2024-02-06T15:54:49.000 2049915 142897 2044650 blood Homo sapiens Streptococcus pneumoniae Bacteremia ST100 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900038185.2 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FFUO00000000.2 2014-02-10T13:39:45Z GCA_900038185.2 haploid public 2009206439-sc-2013-10-09T11:51:12Z-1712476 86.27 0.31 32 2015-08-10T19:05:37 GCA_053203845.1 810419 46 11511_8#34 2009206439-sc-2013-10-09T11:51:12Z-1712476 USA 11511_8#34 SAMEA2203886 1313 GCF_900038185.2 Generic.1.0 86.27 SRA GCF_900038185.2 category_na live 2019-04-18T15:39:19Z GPSC3 PRJEB3084 GCF_900038185.2-RS_2025_12_29 SC SC 15 1712476 2019-04-18T15:39:19Z 2014-02-10T00:00:00.000 2009206439 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFUO02 2009 2245STDY5609026 2014-02-10T13:39:45Z Prokka current 15 2009206439-sc-2013-10-09T11:51:12Z-1712476 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFUO02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC3 species_match 98.82 SAMEA2203886 3 Streptococcus pneumoniae 92.58 Streptococcus pneumoniae 1313 PRJEB3084 6 current na Best-placed reference protein set; GeneMarkS-2+ 280610 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-29 33F 33F species Homo sapiens 1921 Streptococcus pneumoniae Streptococcus pneumoniae ERS356390 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-02-28T18:05:49.956 98.84 2044650 92.58 1313 2134 Streptococcus pneumoniae 2024-02-06T15:54:49.000 2049915 142897 2044650 blood Homo sapiens Streptococcus pneumoniae Bacteremia 161 ST100 EBI 100 GCA_053203845.1 GCF_900038185.2-RS_2025_12_29 SLX Streptococcus pneumoniae GCF_900038185.2 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FFUO00000000.2 2014-02-10T13:39:45Z GCF_900038185.2 haploid public 2009206439-sc-2013-10-09T11:51:12Z-1712476 86.27 0.31 32 2015-08-10T19:05:37 GCA_053203845.1 810419 52 11511_8#34 2009206439-sc-2013-10-09T11:51:12Z-1712476 USA 11511_8#34 SAMEA2203886 1313 GCA_900038185.2 Generic.1.0 86.27 SRA GCA_900038185.2 category_na live 2019-04-18T15:39:19Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 15 1712476 2019-04-18T15:39:19Z 2014-02-10T00:00:00.000 2009206439 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFUO02 2009 GPSC3 substr. ST100 6.10 2014-02-10T13:39:45Z Prokka current 15 2009206439-sc-2013-10-09T11:51:12Z-1712476 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFUO02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC3 species_match 98.82 SAMEA2203862 3 Streptococcus pneumoniae 92.87 Streptococcus pneumoniae 1313 PRJEB3084 6 current na 267332 type Streptococcus pneumoniae 2019-05-11 33F 33F species Homo sapiens 2015 Streptococcus pneumoniae Streptococcus pneumoniae ERS356366 SC 2009 v1.2.4 2014-02-28T18:05:48.863 98.94 2042248 92.87 1313 2061 Streptococcus pneumoniae 2024-02-06T15:54:49.000 2043916 129264 2042246 blood Homo sapiens Streptococcus pneumoniae Pneumonia ST100 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900048125.2 type blood 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FFTT00000000.2 2014-02-18T09:20:01Z GCA_900048125.2 haploid public 2010220104-sc-2013-10-09T11:50:47Z-1712452 86.43 0.31 27 2015-08-10T19:05:36 GCA_053203845.1 809412 46 11657_8#15 2010220104-sc-2013-10-09T11:50:47Z-1712452 USA 11657_8#15 SAMEA2203862 1313 GCF_900048125.2 Generic.1.0 86.43 SRA GCF_900048125.2 category_na live 2019-04-18T15:39:19Z GPSC3 PRJEB3084 GCF_900048125.2-RS_2025_12_30 SC SC 20 1712452 2019-04-18T15:39:19Z 2014-02-18T00:00:00.000 2010220104 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFTT02 2009 2245STDY5609002 2014-02-18T09:20:01Z Prokka current 20 2010220104-sc-2013-10-09T11:50:47Z-1712452 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFTT02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC3 species_match 98.83 SAMEA2203862 3 Streptococcus pneumoniae 92.87 Streptococcus pneumoniae 1313 PRJEB3084 6 current na Best-placed reference protein set; GeneMarkS-2+ 267332 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-30 33F 33F species Homo sapiens 1907 Streptococcus pneumoniae Streptococcus pneumoniae ERS356366 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-02-28T18:05:48.863 98.94 2042248 92.87 1313 2125 Streptococcus pneumoniae 2024-02-06T15:54:49.000 2043916 129264 2042246 blood Homo sapiens Streptococcus pneumoniae Pneumonia 167 ST100 EBI 100 GCA_053203845.1 GCF_900048125.2-RS_2025_12_30 SLX Streptococcus pneumoniae GCF_900048125.2 type blood 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FFTT00000000.2 2014-02-18T09:20:01Z GCF_900048125.2 haploid public 2010220104-sc-2013-10-09T11:50:47Z-1712452 86.43 0.31 27 2015-08-10T19:05:36 GCA_053203845.1 809412 51 11657_8#15 2010220104-sc-2013-10-09T11:50:47Z-1712452 USA 11657_8#15 SAMEA2203862 1313 GCA_900048125.2 Generic.1.0 86.43 SRA GCA_900048125.2 category_na live 2019-04-18T15:39:19Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 20 1712452 2019-04-18T15:39:19Z 2014-02-18T00:00:00.000 2010220104 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFTT02 2009 GPSC3 substr. ST100 6.10 2014-02-18T09:20:01Z Prokka current 20 2010220104-sc-2013-10-09T11:50:47Z-1712452 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFTT02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC3 species_match 98.83 SAMEA2204002 4 Streptococcus pneumoniae 92.85 Streptococcus pneumoniae 1313 PRJEB3084 7 current na 234841 type Streptococcus pneumoniae 2019-05-11 33F 33F species Homo sapiens 2010 Streptococcus pneumoniae Streptococcus pneumoniae ERS356513 SC 2009 v1.2.4 2014-02-28T18:05:56.520 98.88 2041137 92.85 1313 2056 Streptococcus pneumoniae 2024-02-06T15:54:52.000 2044112 101688 2041136 blood Homo sapiens Streptococcus pneumoniae Pneumonia ST100 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900065485.2 type blood 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 39.3061 https://www.ncbi.nlm.nih.gov/nuccore/FHHU00000000.2 2014-02-18T09:19:59Z GCA_900065485.2 haploid public 2009215690-sc-2013-10-09T11:53:24Z-1712593 86.36 0.31 28 2015-08-10T19:05:42 GCA_053203845.1 809078 46 11657_8#29 2009215690-sc-2013-10-09T11:53:24Z-1712593 USA 11657_8#29 SAMEA2204002 1313 GCF_900065485.2 Generic.1.0 86.36 SRA GCF_900065485.2 category_na live 2019-04-18T15:39:19Z GPSC3 PRJEB3084 GCF_900065485.2-RS_2025_12_29 SC SC 17 1712593 2019-04-18T15:39:19Z 2014-02-18T00:00:00.000 2009215690 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHHU02 2009 2245STDY5609143 2014-02-18T09:19:59Z Prokka current 17 2009215690-sc-2013-10-09T11:53:24Z-1712593 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHHU02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC3 species_match 98.83 SAMEA2204002 4 Streptococcus pneumoniae 92.85 Streptococcus pneumoniae 1313 PRJEB3084 7 current na Best-placed reference protein set; GeneMarkS-2+ 234841 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-29 33F 33F species Homo sapiens 1919 Streptococcus pneumoniae Streptococcus pneumoniae ERS356513 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-02-28T18:05:56.520 98.88 2041137 92.85 1313 2132 Streptococcus pneumoniae 2024-02-06T15:54:52.000 2044112 101688 2041136 blood Homo sapiens Streptococcus pneumoniae Pneumonia 162 ST100 EBI 100 GCA_053203845.1 GCF_900065485.2-RS_2025_12_29 SLX Streptococcus pneumoniae GCF_900065485.2 type blood 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 39.3061 https://www.ncbi.nlm.nih.gov/nuccore/FHHU00000000.2 2014-02-18T09:19:59Z GCF_900065485.2 haploid public 2009215690-sc-2013-10-09T11:53:24Z-1712593 86.36 0.31 28 2015-08-10T19:05:42 GCA_053203845.1 809078 51 11657_8#29 2009215690-sc-2013-10-09T11:53:24Z-1712593 USA 11657_8#29 SAMEA2204002 1313 GCA_900065485.2 Generic.1.0 86.36 SRA GCA_900065485.2 category_na live 2019-04-18T15:39:19Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 17 1712593 2019-04-18T15:39:19Z 2014-02-18T00:00:00.000 2009215690 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHHU02 2009 GPSC3 substr. ST100 6.10 2014-02-18T09:19:59Z Prokka current 17 2009215690-sc-2013-10-09T11:53:24Z-1712593 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHHU02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC3 species_match 98.83 SAMEA2238325 5 Streptococcus pneumoniae 91.89 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 179571 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2024 Streptococcus pneumoniae Streptococcus pneumoniae ERS367137 SC 2006/2012 v1.2.4 2014-05-07T08:34:15.793 98.77 2052540 91.89 1313 2072 2024-02-06T05:13:55.000 2054897 100808 2052539 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900016945.1 type CSF 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 31.2016 https://www.ncbi.nlm.nih.gov/nuccore/FDWM00000000.1 2014-03-18T09:35:30Z GCA_900016945.1 haploid public 2061532-sc-2013-11-05T11:54:37Z-1749683 85.95 0.31 39 2015-08-10T19:24:07 GCA_053203845.1 814158 48 11860_4#52 2061532-sc-2013-11-05T11:54:37Z-1749683 Netherlands 11860_4#52 SAMEA2238325 1313 GCF_900016945.1 Generic.1.0 85.95 SRA GCF_900016945.1 category_na live 2018-03-09T10:28:47Z 2842STDY5643694 PRJEB4909 GCF_900016945.1-RS_2025_09_28 SC SC 29 1749683 2018-03-09T10:28:47Z 2014-03-18T00:00:00.000 2061532 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDWM01 2006/2012 2842STDY5643694 2014-03-18T09:35:30Z Prokka current 29 2061532-sc-2013-11-05T11:54:37Z-1749683 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDWM01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643694 species_match 98.8 SAMEA2238325 5 Streptococcus pneumoniae 91.89 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 179571 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1925 Streptococcus pneumoniae Streptococcus pneumoniae ERS367137 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:15.793 98.77 2052540 91.89 1313 2147 2024-02-06T05:13:55.000 2054897 100808 2052539 CSF Homo sapiens Streptococcus pneumoniae Disease 168 EBI 100 GCA_053203845.1 GCF_900016945.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900016945.1 type CSF 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 31.2016 https://www.ncbi.nlm.nih.gov/nuccore/FDWM00000000.1 2014-03-18T09:35:30Z GCF_900016945.1 haploid public 2061532-sc-2013-11-05T11:54:37Z-1749683 85.95 0.31 39 2015-08-10T19:24:07 GCA_053203845.1 814158 54 11860_4#52 2061532-sc-2013-11-05T11:54:37Z-1749683 Netherlands 11860_4#52 SAMEA2238325 1313 GCA_900016945.1 Generic.1.0 85.95 SRA GCA_900016945.1 category_na live 2018-03-09T10:28:47Z 2842STDY5643694 PRJEB4909 Annotation submitted by SC SC SC 29 1749683 2018-03-09T10:28:47Z 2014-03-18T00:00:00.000 2061532 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDWM01 2006/2012 2842STDY5643694 6.10 2014-03-18T09:35:30Z Prokka current 29 2061532-sc-2013-11-05T11:54:37Z-1749683 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDWM01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643694 species_match 98.8 SAMEA2203953 4 Streptococcus pneumoniae 94.7 Streptococcus pneumoniae 1313 PRJEB3084 5 current na 208982 type Streptococcus pneumoniae 2019-05-11 33F 33F species Homo sapiens 1968 Streptococcus pneumoniae Streptococcus pneumoniae ERS356464 SC 2009 v1.2.4 2014-02-28T18:05:53.823 99.15 2008357 94.7 1313 2014 Streptococcus pneumoniae 2024-02-06T15:54:51.000 2010459 97165 2008357 blood Homo sapiens Streptococcus pneumoniae Pneumonia ST60 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900053495.2 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FHHJ00000000.2 2014-02-18T09:20:00Z GCA_900053495.2 haploid public 2009212862-sc-2013-10-09T11:52:29Z-1712544 86.69 0.31 39 2015-08-10T19:05:39 GCA_053203845.1 796488 46 11658_8#4 2009212862-sc-2013-10-09T11:52:29Z-1712544 USA 11658_8#4 SAMEA2203953 1313 GCF_900053495.2 Generic.1.0 86.69 SRA GCF_900053495.2 category_na live 2019-04-18T15:39:19Z GPSC3 PRJEB3084 GCF_900053495.2-RS_2026_01_04 SC SC 31 1712544 2019-04-18T15:39:19Z 2014-02-18T00:00:00.000 2009212862 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHHJ02 2009 2245STDY5609094 2014-02-18T09:20:00Z Prokka current 31 2009212862-sc-2013-10-09T11:52:29Z-1712544 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHHJ02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC3 species_match 98.84 SAMEA2203953 4 Streptococcus pneumoniae 94.7 Streptococcus pneumoniae 1313 PRJEB3084 5 current na Best-placed reference protein set; GeneMarkS-2+ 208982 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-04 33F 33F species Homo sapiens 1867 Streptococcus pneumoniae Streptococcus pneumoniae ERS356464 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-02-28T18:05:53.823 99.15 2008357 94.7 1313 2085 Streptococcus pneumoniae 2024-02-06T15:54:51.000 2010459 97165 2008357 blood Homo sapiens Streptococcus pneumoniae Pneumonia 167 ST60 EBI 100 GCA_053203845.1 GCF_900053495.2-RS_2026_01_04 SLX Streptococcus pneumoniae GCF_900053495.2 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FHHJ00000000.2 2014-02-18T09:20:00Z GCF_900053495.2 haploid public 2009212862-sc-2013-10-09T11:52:29Z-1712544 86.69 0.31 39 2015-08-10T19:05:39 GCA_053203845.1 796488 51 11658_8#4 2009212862-sc-2013-10-09T11:52:29Z-1712544 USA 11658_8#4 SAMEA2203953 1313 GCA_900053495.2 Generic.1.0 86.69 SRA GCA_900053495.2 category_na live 2019-04-18T15:39:19Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 31 1712544 2019-04-18T15:39:19Z 2014-02-18T00:00:00.000 2009212862 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHHJ02 2009 GPSC3 substr. ST60 6.10 2014-02-18T09:20:00Z Prokka current 31 2009212862-sc-2013-10-09T11:52:29Z-1712544 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHHJ02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC3 species_match 98.84 SAMEA2521572 5 Streptococcus pneumoniae 91.33 Streptococcus pneumoniae 1313 PRJEB3084 6 current na 101094 type Streptococcus pneumoniae 2019-05-16 33F 33F species Homo sapiens 2073 Streptococcus pneumoniae Streptococcus pneumoniae ERS455112 SC 2012 v1.2.4 2014-09-17T09:08:13.180 98.9 2087979 91.33 1313 2121 Streptococcus pneumoniae 2024-02-06T15:55:02.000 2089305 88563 2087978 blood Homo sapiens Streptococcus pneumoniae IPD ST717 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900059325.2 type blood 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 40.644 https://www.ncbi.nlm.nih.gov/nuccore/FHQP00000000.2 2014-09-16T09:22:32Z GCA_900059325.2 haploid public 2012214919-sc-1946864 86.9 0.31 42 2015-08-10T19:57:08 GCA_053203845.1 827999 48 13414_2#21 2012214919-sc-1946864 USA 13414_2#21 SAMEA2521572 1313 GCF_900059325.2 Generic.1.0 86.9 SRA GCF_900059325.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 GCF_900059325.2-RS_2026_01_19 SC SC 36 1946864 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012214919 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQP02 2012 2245STDY5819538 2014-09-16T09:22:32Z Prokka current 36 2012214919-sc-1946864 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQP02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-16 GPSC3 species_match 98.7 SAMEA2521572 5 Streptococcus pneumoniae 91.33 Streptococcus pneumoniae 1313 PRJEB3084 6 current na Best-placed reference protein set; GeneMarkS-2+ 101094 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 33F 33F species Homo sapiens 1991 Streptococcus pneumoniae Streptococcus pneumoniae ERS455112 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:13.180 98.9 2087979 91.33 1313 2210 Streptococcus pneumoniae 2024-02-06T15:55:02.000 2089305 88563 2087978 blood Homo sapiens Streptococcus pneumoniae IPD 165 ST717 EBI 100 GCA_053203845.1 GCF_900059325.2-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_900059325.2 type blood 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 40.644 https://www.ncbi.nlm.nih.gov/nuccore/FHQP00000000.2 2014-09-16T09:22:32Z GCF_900059325.2 haploid public 2012214919-sc-1946864 86.9 0.31 42 2015-08-10T19:57:08 GCA_053203845.1 827999 54 13414_2#21 2012214919-sc-1946864 USA 13414_2#21 SAMEA2521572 1313 GCA_900059325.2 Generic.1.0 86.9 SRA GCA_900059325.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 36 1946864 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012214919 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQP02 2012 GPSC3 substr. ST717 6.10 2014-09-16T09:22:32Z Prokka current 36 2012214919-sc-1946864 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQP02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-16 GPSC3 species_match 98.7 SAMEA2238517 2 Streptococcus pneumoniae 92.63 Streptococcus pneumoniae 1313 PRJEB4909 4 current na 368774 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2010 Streptococcus pneumoniae Streptococcus pneumoniae ERS367329 SC 2006/2012 v1.2.4 2014-05-07T08:34:35.880 98.94 2038036 92.63 1313 2056 2024-02-06T05:10:21.000 2041356 242238 2038036 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900046695.1 type CSF 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FEAW00000000.1 2014-03-18T09:35:29Z GCA_900046695.1 haploid public 2080611-sc-2013-11-05T11:57:44Z-1749877 86.03 0.31 28 2018-03-10T18:56:31 GCA_053203845.1 808272 46 11860_6#52 2080611-sc-2013-11-05T11:57:44Z-1749877 Netherlands 11860_6#52 SAMEA2238517 1313 GCF_900046695.1 Generic.1.0 86.03 SRA GCF_900046695.1 category_na live 2018-03-09T10:28:22Z 2842STDY5643888 PRJEB4909 GCF_900046695.1-RS_2025_09_21 SC SC 16 1749877 2018-03-09T10:28:22Z 2014-03-18T00:00:00.000 2080611 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEAW01 2006/2012 2842STDY5643888 2014-03-18T09:35:29Z Prokka current 16 2080611-sc-2013-11-05T11:57:44Z-1749877 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEAW01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643888 species_match 98.81 SAMEA2238517 2 Streptococcus pneumoniae 92.63 Streptococcus pneumoniae 1313 PRJEB4909 4 current na Best-placed reference protein set; GeneMarkS-2+ 368774 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1923 Streptococcus pneumoniae Streptococcus pneumoniae ERS367329 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:35.880 98.94 2038036 92.63 1313 2126 2024-02-06T05:10:21.000 2041356 242238 2038036 CSF Homo sapiens Streptococcus pneumoniae Disease 152 EBI 100 GCA_053203845.1 GCF_900046695.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900046695.1 type CSF 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FEAW00000000.1 2014-03-18T09:35:29Z GCF_900046695.1 haploid public 2080611-sc-2013-11-05T11:57:44Z-1749877 86.03 0.31 28 2018-03-10T18:56:31 GCA_053203845.1 808272 51 11860_6#52 2080611-sc-2013-11-05T11:57:44Z-1749877 Netherlands 11860_6#52 SAMEA2238517 1313 GCA_900046695.1 Generic.1.0 86.03 SRA GCA_900046695.1 category_na live 2018-03-09T10:28:22Z 2842STDY5643888 PRJEB4909 Annotation submitted by SC SC SC 16 1749877 2018-03-09T10:28:22Z 2014-03-18T00:00:00.000 2080611 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEAW01 2006/2012 2842STDY5643888 6.10 2014-03-18T09:35:29Z Prokka current 16 2080611-sc-2013-11-05T11:57:44Z-1749877 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEAW01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643888 species_match 98.81 SAMEA2521620 2 Streptococcus pneumoniae 92.37 Streptococcus pneumoniae 1313 PRJEB3084 5 current na 447421 type Streptococcus pneumoniae 2019-05-11 33F 33F species Homo sapiens 2037 Streptococcus pneumoniae Streptococcus pneumoniae ERS455160 SC 2012 v1.2.4 2014-09-17T09:08:14.906 98.88 2058819 92.37 1313 2083 Streptococcus pneumoniae 2024-02-06T15:55:04.000 2063396 148922 2058818 blood Homo sapiens Streptococcus pneumoniae IPD ST2705 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900064645.2 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 39.3061 https://www.ncbi.nlm.nih.gov/nuccore/FHSE00000000.2 2014-09-16T09:22:33Z GCA_900064645.2 haploid public 2012219972-sc-1946912 86.66 0.31 31 2015-08-10T19:57:10 GCA_053203845.1 815209 46 13414_2#69 2012219972-sc-1946912 USA 13414_2#69 SAMEA2521620 1313 GCF_900064645.2 Generic.1.0 86.66 SRA GCF_900064645.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 GCF_900064645.2-RS_2025_12_30 SC SC 16 1946912 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012219972 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSE02 2012 2245STDY5819586 2014-09-16T09:22:33Z Prokka current 16 2012219972-sc-1946912 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSE02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC3 species_match 98.85 SAMEA2521620 2 Streptococcus pneumoniae 92.37 Streptococcus pneumoniae 1313 PRJEB3084 5 current na Best-placed reference protein set; GeneMarkS-2+ 447421 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-30 33F 33F species Homo sapiens 1919 Streptococcus pneumoniae Streptococcus pneumoniae ERS455160 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:14.906 98.88 2058819 92.37 1313 2136 Streptococcus pneumoniae 2024-02-06T15:55:04.000 2063396 148922 2058818 blood Homo sapiens Streptococcus pneumoniae IPD 165 ST2705 EBI 100 GCA_053203845.1 GCF_900064645.2-RS_2025_12_30 SLX Streptococcus pneumoniae GCF_900064645.2 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 39.3061 https://www.ncbi.nlm.nih.gov/nuccore/FHSE00000000.2 2014-09-16T09:22:33Z GCF_900064645.2 haploid public 2012219972-sc-1946912 86.66 0.31 31 2015-08-10T19:57:10 GCA_053203845.1 815209 52 13414_2#69 2012219972-sc-1946912 USA 13414_2#69 SAMEA2521620 1313 GCA_900064645.2 Generic.1.0 86.66 SRA GCA_900064645.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 16 1946912 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012219972 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSE02 2012 GPSC3 substr. ST2705 6.10 2014-09-16T09:22:33Z Prokka current 16 2012219972-sc-1946912 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSE02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC3 species_match 98.85 SAMEA2239095 3 Streptococcus pneumoniae 92.75 Streptococcus pneumoniae 1313 PRJEB4909 4 current na 275292 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2005 Streptococcus pneumoniae Streptococcus pneumoniae ERS367907 SC 2006/2012 v1.2.4 2014-05-07T08:35:20.223 98.94 2037240 92.75 1313 2052 2024-02-06T05:17:31.000 2039027 123562 2037233 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900023725.1 type CSF 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FCSU00000000.1 2014-03-18T09:35:31Z GCA_900023725.1 haploid public 992020-sc-2013-11-05T12:07:50Z-1750465 86.1 0.31 34 2018-03-10T18:56:57 GCA_053203845.1 807911 47 11860_7#56 992020-sc-2013-11-05T12:07:50Z-1750465 Netherlands 11860_7#56 SAMEA2239095 1313 GCF_900023725.1 Generic.1.0 86.1 SRA GCF_900023725.1 category_na live 2018-03-09T10:29:11Z 2842STDY5644476 PRJEB4909 GCF_900023725.1-RS_2026_01_25 SC SC 28 1750465 2018-03-09T10:29:11Z 2014-03-18T00:00:00.000 992020 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCSU01 2006/2012 2842STDY5644476 2014-03-18T09:35:31Z Prokka current 28 992020-sc-2013-11-05T12:07:50Z-1750465 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCSU01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644476 species_match 98.8 SAMEA2239095 3 Streptococcus pneumoniae 92.75 Streptococcus pneumoniae 1313 PRJEB4909 4 current na Best-placed reference protein set; GeneMarkS-2+ 275292 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1920 Streptococcus pneumoniae Streptococcus pneumoniae ERS367907 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:20.223 98.94 2037240 92.75 1313 2129 2024-02-06T05:17:31.000 2039027 123562 2037233 CSF Homo sapiens Streptococcus pneumoniae Disease 157 EBI 100 GCA_053203845.1 GCF_900023725.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900023725.1 type CSF 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FCSU00000000.1 2014-03-18T09:35:31Z GCF_900023725.1 haploid public 992020-sc-2013-11-05T12:07:50Z-1750465 86.1 0.31 34 2018-03-10T18:56:57 GCA_053203845.1 807911 52 11860_7#56 992020-sc-2013-11-05T12:07:50Z-1750465 Netherlands 11860_7#56 SAMEA2239095 1313 GCA_900023725.1 Generic.1.0 86.1 SRA GCA_900023725.1 category_na live 2018-03-09T10:29:11Z 2842STDY5644476 PRJEB4909 Annotation submitted by SC SC SC 28 1750465 2018-03-09T10:29:11Z 2014-03-18T00:00:00.000 992020 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCSU01 2006/2012 2842STDY5644476 6.10 2014-03-18T09:35:31Z Prokka current 28 992020-sc-2013-11-05T12:07:50Z-1750465 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCSU01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644476 species_match 98.8 SAMEA1463135 5 Streptococcus pneumoniae 92.07 Streptococcus pneumoniae 1313 PRJEB2632 5 current na 122092 type Streptococcus pneumoniae 2015-07-29 33F 33F species Homo sapiens 2021 Streptococcus pneumoniae Streptococcus pneumoniae ERS070076 SC 2007 v1.2.4 2012-06-06T09:06:38.896 98.84 2066875 92.07 1313 2053 2024-02-06T09:02:33.000 OZJ9F 2066875 122092 2066875 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 1 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001088445.2 type nasopharynx 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/COEZ00000000.2 2012-05-28T10:19:33Z GCA_001088445.2 haploid public MD5107-sc-2011-11-08T10:08:18Z-1298444 86.72 0.31 100 2015-09-10T08:20:51 OZJ9F GCA_053203845.1 818448 31 7622_5#65 MD5107-sc-2011-11-08T10:08:18Z-1298444 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463135 1313 GCF_001088445.1 Generic.1.0 86.72 SRA GCF_001088445.1 category_na live 2018-03-09T11:45:31Z MD5107 PRJEB2632 GCF_001088445.1-RS_2026_01_21 SC SC 100 OZJ9F 2018-03-09T11:45:31Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COEZ02 2007 MD5107 2012-05-28T10:19:33Z Velvet current 100 MD5107-sc-2011-11-08T10:08:18Z-1298444 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COEZ02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 MD5107 species_match 98.84 SAMEA1463135 5 Streptococcus pneumoniae 92.07 Streptococcus pneumoniae 1313 PRJEB2632 5 current na Best-placed reference protein set; GeneMarkS-2+ 122092 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-21 33F 33F species Homo sapiens 1935 Streptococcus pneumoniae Streptococcus pneumoniae ERS070076 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:38.896 98.84 2066875 92.07 1313 2155 2024-02-06T09:02:33.000 OZJ9F 2066875 122092 2066875 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 170 EBI 100 GCA_053203845.1 GCF_001088445.1-RS_2026_01_21 SLX Streptococcus pneumoniae GCF_001088445.1 type nasopharynx 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/COEZ00000000.2 2012-05-28T10:19:33Z GCF_001088445.1 haploid public MD5107-sc-2011-11-08T10:08:18Z-1298444 86.72 0.31 100 2015-09-10T08:20:51 OZJ9F GCA_053203845.1 818448 50 7622_5#65 MD5107-sc-2011-11-08T10:08:18Z-1298444 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463135 1313 GCA_001088445.2 Generic.1.0 86.72 SRA GCA_001088445.2 category_na live 2018-03-09T11:45:31Z MD5107 PRJEB2632 Annotation submitted by SC SC SC 100 OZJ9F 2018-03-09T11:45:31Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COEZ02 2007 MD5107 6.10 2012-05-28T10:19:33Z Velvet current 100 MD5107-sc-2011-11-08T10:08:18Z-1298444 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COEZ02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 MD5107 species_match 98.84 SAMEA2521593 5 Streptococcus pneumoniae 92.5 Streptococcus pneumoniae 1313 PRJEB3084 6 current na 135976 type Streptococcus pneumoniae 2019-05-12 33F 33F species Homo sapiens 2014 Streptococcus pneumoniae Streptococcus pneumoniae ERS455133 SC 2012 v1.2.4 2014-09-17T09:08:13.860 98.88 2046347 92.5 1313 2060 Streptococcus pneumoniae 2024-02-06T15:55:07.000 2047895 101312 2046346 blood Homo sapiens Streptococcus pneumoniae IPD ST100 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900060585.2 type blood 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 39.3061 https://www.ncbi.nlm.nih.gov/nuccore/FHRF00000000.2 2014-09-16T09:22:33Z GCA_900060585.2 haploid public 2013202261-sc-1946885 86.26 0.31 36 2015-08-10T19:57:08 GCA_053203845.1 810972 46 13414_2#42 2013202261-sc-1946885 USA 13414_2#42 SAMEA2521593 1313 GCF_900060585.2 Generic.1.0 86.26 SRA GCF_900060585.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 GCF_900060585.2-RS_2026_01_01 SC SC 29 1946885 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013202261 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHRF02 2012 2245STDY5819559 2014-09-16T09:22:33Z Prokka current 29 2013202261-sc-1946885 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHRF02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC3 species_match 98.83 SAMEA2521593 5 Streptococcus pneumoniae 92.5 Streptococcus pneumoniae 1313 PRJEB3084 6 current na Best-placed reference protein set; GeneMarkS-2+ 135976 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-01 33F 33F species Homo sapiens 1923 Streptococcus pneumoniae Streptococcus pneumoniae ERS455133 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:13.860 98.88 2046347 92.5 1313 2149 Streptococcus pneumoniae 2024-02-06T15:55:07.000 2047895 101312 2046346 blood Homo sapiens Streptococcus pneumoniae IPD 175 ST100 EBI 100 GCA_053203845.1 GCF_900060585.2-RS_2026_01_01 SLX Streptococcus pneumoniae GCF_900060585.2 type blood 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 39.3061 https://www.ncbi.nlm.nih.gov/nuccore/FHRF00000000.2 2014-09-16T09:22:33Z GCF_900060585.2 haploid public 2013202261-sc-1946885 86.26 0.31 36 2015-08-10T19:57:08 GCA_053203845.1 810972 51 13414_2#42 2013202261-sc-1946885 USA 13414_2#42 SAMEA2521593 1313 GCA_900060585.2 Generic.1.0 86.26 SRA GCA_900060585.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 29 1946885 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013202261 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHRF02 2012 GPSC3 substr. ST100 6.10 2014-09-16T09:22:33Z Prokka current 29 2013202261-sc-1946885 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHRF02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC3 species_match 98.83 SAMEA1463190 7 Streptococcus pneumoniae 92.08 Streptococcus pneumoniae 1313 PRJEB2632 7 current na 97009 type Streptococcus pneumoniae 2015-07-29 33F 33F species Homo sapiens 2013 Streptococcus pneumoniae Streptococcus pneumoniae ERS070148 SC 2007 v1.2.4 2012-05-15T12:05:32.966 98.88 2064757 92.08 1313 2044 2024-02-05T18:13:48.000 ZPN7P 2064757 97009 2064757 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001164925.2 type nasopharynx 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 39.3061 https://www.ncbi.nlm.nih.gov/nuccore/CNYQ00000000.2 2012-05-09T10:03:15Z GCA_001164925.2 haploid public NP7053-sc-2011-11-08T10:09:12Z-1298516 86.64 0.31 120 2015-09-10T08:20:41 ZPN7P GCA_053203845.1 817620 31 7553_4#41 NP7053-sc-2011-11-08T10:09:12Z-1298516 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463190 1313 GCF_001164925.1 Generic.1.0 86.64 SRA GCF_001164925.1 category_na live 2018-03-09T09:54:41Z NP7053 PRJEB2632 GCF_001164925.1-RS_2026_01_22 SC SC 120 ZPN7P 2018-03-09T09:54:41Z 2012-05-09T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNYQ02 2007 NP7053 2012-05-09T10:03:15Z Velvet current 120 NP7053-sc-2011-11-08T10:09:12Z-1298516 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNYQ02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 NP7053 species_match 98.85 SAMEA1463190 7 Streptococcus pneumoniae 92.08 Streptococcus pneumoniae 1313 PRJEB2632 7 current na Best-placed reference protein set; GeneMarkS-2+ 97009 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 33F 33F species Homo sapiens 1939 Streptococcus pneumoniae Streptococcus pneumoniae ERS070148 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-05-15T12:05:32.966 98.88 2064757 92.08 1313 2163 2024-02-05T18:13:48.000 ZPN7P 2064757 97009 2064757 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 173 EBI 100 GCA_053203845.1 GCF_001164925.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_001164925.1 type nasopharynx 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 39.3061 https://www.ncbi.nlm.nih.gov/nuccore/CNYQ00000000.2 2012-05-09T10:03:15Z GCF_001164925.1 haploid public NP7053-sc-2011-11-08T10:09:12Z-1298516 86.64 0.31 120 2015-09-10T08:20:41 ZPN7P GCA_053203845.1 817620 51 7553_4#41 NP7053-sc-2011-11-08T10:09:12Z-1298516 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463190 1313 GCA_001164925.2 Generic.1.0 86.64 SRA GCA_001164925.2 category_na live 2018-03-09T09:54:41Z NP7053 PRJEB2632 Annotation submitted by SC SC SC 120 ZPN7P 2018-03-09T09:54:41Z 2012-05-09T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNYQ02 2007 NP7053 6.10 2012-05-09T10:03:15Z Velvet current 120 NP7053-sc-2011-11-08T10:09:12Z-1298516 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNYQ02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 NP7053 species_match 98.85 SAMEA1026691 7 Streptococcus pneumoniae 92.9 Streptococcus pneumoniae 1313 PRJEB2417 7 current na 92957 type Streptococcus pneumoniae 2017-06-27 33F 33F species Homo sapiens 1983 Streptococcus pneumoniae ERS023366 SC 2009-12-15 v1.2.4 2011-09-23T19:14:28.336 98.32 2026210 92.9 1313 2031 2017-06-24T15:50:47.000 2026210 92957 2026209 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900192165.1 type Nasophaynx 98.8 OK 39.5 Streptococcus pneumoniae 14.0452 https://www.ncbi.nlm.nih.gov/nuccore/FYTC00000000.1 2011-09-20 GCA_900192165.1 haploid ERS023366 85.78 0.31 37 2017-06-28T08:06:25 GCA_053203845.1 803526 48 6512_7#4 United Kingdom UoS4184-sc-2011-02-14-1078420; 6512_74 1313 GCF_900192165.1 Generic.1.0 85.78 SRA Sample Description GCF_900192165.1 category_na live 2017-06-22 UoS4184 PRJEB2417 GCF_900192165.1-RS_2025_09_04 SC 37 1078420 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYTC01 2009-12-15 UoS4184 Prokka current 37 ERS023366 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYTC01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS4184 species_match 98.8 SAMEA1026691 7 Streptococcus pneumoniae 92.9 Streptococcus pneumoniae 1313 PRJEB2417 7 current na Best-placed reference protein set; GeneMarkS-2+ 92957 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 33F 33F species Homo sapiens 1866 Streptococcus pneumoniae ERS023366 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-12-15 v1.2.4 2011-09-23T19:14:28.336 98.32 2026210 92.9 1313 2071 2017-06-24T15:50:47.000 2026210 92957 2026209 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 156 EBI 100 GCA_053203845.1 GCF_900192165.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900192165.1 type Nasophaynx 98.8 OK 39.5 Streptococcus pneumoniae 14.0452 https://www.ncbi.nlm.nih.gov/nuccore/FYTC00000000.1 2011-09-20 GCF_900192165.1 haploid ERS023366 85.78 0.31 37 2017-06-28T08:06:25 GCA_053203845.1 803526 49 6512_7#4 United Kingdom UoS4184-sc-2011-02-14-1078420; 6512_74 1313 GCA_900192165.1 Generic.1.0 85.78 SRA Sample Description GCA_900192165.1 category_na live 2017-06-22 UoS4184 PRJEB2417 Annotation submitted by SC SC 37 1078420 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYTC01 2009-12-15 UoS4184 6.10 Prokka current 37 ERS023366 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYTC01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS4184 species_match 98.8 SAMEA1026539 9 Streptococcus pneumoniae 92.71 Streptococcus pneumoniae 1313 PRJEB2417 9 current na 86814 type Streptococcus pneumoniae 2017-06-27 33F 33F species Homo sapiens 1976 Streptococcus pneumoniae ERS023397 SC 2010-02-02 v1.2.4 2012-01-20T20:19:18.923 98.64 2029851 92.71 1313 2025 2017-06-24T15:53:26.000 2029851 86814 2029843 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900192465.1 type Nasophaynx 98.81 OK 39.5 Streptococcus pneumoniae 24.1214 https://www.ncbi.nlm.nih.gov/nuccore/FYTV00000000.1 2011-09-14 GCA_900192465.1 haploid ERS023397 85.76 0.31 36 2017-06-28T08:06:09 GCA_053203845.1 805443 49 6486_5#13 United Kingdom UoS4314-sc-2011-02-14-1078451; 6486_513 1313 GCF_900192465.1 Generic.1.0 85.76 SRA Sample Description GCF_900192465.1 category_na live 2017-06-22 UoS4314 PRJEB2417 GCF_900192465.1-RS_2025_08_31 SC 36 1078451 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYTV01 2010-02-02 UoS4314 Prokka current 36 ERS023397 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYTV01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS4314 species_match 98.81 SAMEA1026539 9 Streptococcus pneumoniae 92.71 Streptococcus pneumoniae 1313 PRJEB2417 9 current na Best-placed reference protein set; GeneMarkS-2+ 86814 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-31 33F 33F species Homo sapiens 1882 Streptococcus pneumoniae ERS023397 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-02-02 v1.2.4 2012-01-20T20:19:18.923 98.64 2029851 92.71 1313 2091 2017-06-24T15:53:26.000 2029851 86814 2029843 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 159 EBI 100 GCA_053203845.1 GCF_900192465.1-RS_2025_08_31 SLX Streptococcus pneumoniae GCF_900192465.1 type Nasophaynx 98.81 OK 39.5 Streptococcus pneumoniae 24.1214 https://www.ncbi.nlm.nih.gov/nuccore/FYTV00000000.1 2011-09-14 GCF_900192465.1 haploid ERS023397 85.76 0.31 36 2017-06-28T08:06:09 GCA_053203845.1 805443 50 6486_5#13 United Kingdom UoS4314-sc-2011-02-14-1078451; 6486_513 1313 GCA_900192465.1 Generic.1.0 85.76 SRA Sample Description GCA_900192465.1 category_na live 2017-06-22 UoS4314 PRJEB2417 Annotation submitted by SC SC 36 1078451 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYTV01 2010-02-02 UoS4314 6.10 Prokka current 36 ERS023397 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYTV01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS4314 species_match 98.81 SAMEA1032562 7 Streptococcus pneumoniae 92.29 Streptococcus pneumoniae 1313 PRJEB2632 7 current na 84375 type Streptococcus pneumoniae 2015-07-28 33F 33F species Homo sapiens 1992 Streptococcus pneumoniae Streptococcus pneumoniae ERS044095 SC 2001 v1.2.4 2012-01-23T19:54:12.360 98.94 2045298 92.29 1313 2022 2024-02-05T17:27:54.000 2045298 84375 2045298 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001300235.2 type nasopharynx 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/CIEE00000000.2 2012-01-19T13:56:13Z GCA_001300235.2 haploid public 187406-sc-2011-08-01T09:45:39Z-1250160 86.02 0.31 122 2015-09-10T08:19:59 GCA_053203845.1 811126 30 6999_5#15 187406-sc-2011-08-01T09:45:39Z-1250160 USA: Massachesetts Streptococcus pneumoniae SAMEA1032562 1313 GCF_001300235.1 Generic.1.0 86.02 SRA GCF_001300235.1 category_na live 2018-03-09T09:53:48Z 187406 PRJEB2632 GCF_001300235.1-RS_2025_08_18 SC SC 122 2018-03-09T09:53:48Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIEE02 2001 187406 2012-01-19T13:56:13Z Velvet current 122 187406-sc-2011-08-01T09:45:39Z-1250160 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CIEE02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-28 187406 species_match 98.82 SAMEA1032562 7 Streptococcus pneumoniae 92.29 Streptococcus pneumoniae 1313 PRJEB2632 7 current na Best-placed reference protein set; GeneMarkS-2+ 84375 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-18 33F 33F species Homo sapiens 1929 Streptococcus pneumoniae Streptococcus pneumoniae ERS044095 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2001 v1.2.4 2012-01-23T19:54:12.360 98.94 2045298 92.29 1313 2138 2024-02-05T17:27:54.000 2045298 84375 2045298 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 160 EBI 100 GCA_053203845.1 GCF_001300235.1-RS_2025_08_18 SLX Streptococcus pneumoniae GCF_001300235.1 type nasopharynx 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/CIEE00000000.2 2012-01-19T13:56:13Z GCF_001300235.1 haploid public 187406-sc-2011-08-01T09:45:39Z-1250160 86.02 0.31 122 2015-09-10T08:19:59 GCA_053203845.1 811126 49 6999_5#15 187406-sc-2011-08-01T09:45:39Z-1250160 USA: Massachesetts Streptococcus pneumoniae SAMEA1032562 1313 GCA_001300235.2 Generic.1.0 86.02 SRA GCA_001300235.2 category_na live 2018-03-09T09:53:48Z 187406 PRJEB2632 Annotation submitted by SC SC SC 122 2018-03-09T09:53:48Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIEE02 2001 187406 6.10 2012-01-19T13:56:13Z Velvet current 122 187406-sc-2011-08-01T09:45:39Z-1250160 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CIEE02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-28 187406 species_match 98.82 SAMEA1026577 9 Streptococcus pneumoniae 92.83 Streptococcus pneumoniae 1313 PRJEB2417 9 current na 81888 type Streptococcus pneumoniae 2017-06-27 33F 33F species Homo sapiens 1966 Streptococcus pneumoniae ERS023115 SC 2007-11-21 v1.2.4 2011-09-13T21:54:20.573 97.97 2017273 92.83 1313 2011 2017-06-24T15:29:16.000 2017351 81888 2017272 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900189945.1 type Nasophaynx 98.82 OK 39.5 Streptococcus pneumoniae 6.93297 https://www.ncbi.nlm.nih.gov/nuccore/FYLD00000000.1 2011-09-06 GCA_900189945.1 haploid ERS023115 85.34 0.31 42 2017-06-28T08:06:03 GCA_053203845.1 800449 45 6472_5#13 United Kingdom UoS2011-sc-2011-02-14-1078169; 6472_513 1313 GCF_900189945.1 Generic.1.0 85.34 SRA Sample Description GCF_900189945.1 category_na live 2017-06-22 UoS2011 PRJEB2417 GCF_900189945.1-RS_2025_09_04 SC 41 1078169 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYLD01 2007-11-21 UoS2011 Prokka current 41 ERS023115 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYLD01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS2011 species_match 98.82 SAMEA1026577 9 Streptococcus pneumoniae 92.83 Streptococcus pneumoniae 1313 PRJEB2417 9 current na Best-placed reference protein set; GeneMarkS-2+ 81888 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 33F 33F species Homo sapiens 1882 Streptococcus pneumoniae ERS023115 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007-11-21 v1.2.4 2011-09-13T21:54:20.573 97.97 2017273 92.83 1313 2075 2017-06-24T15:29:16.000 2017351 81888 2017272 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 147 EBI 100 GCA_053203845.1 GCF_900189945.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900189945.1 type Nasophaynx 98.82 OK 39.5 Streptococcus pneumoniae 6.93297 https://www.ncbi.nlm.nih.gov/nuccore/FYLD00000000.1 2011-09-06 GCF_900189945.1 haploid ERS023115 85.34 0.31 42 2017-06-28T08:06:03 GCA_053203845.1 800449 46 6472_5#13 United Kingdom UoS2011-sc-2011-02-14-1078169; 6472_513 1313 GCA_900189945.1 Generic.1.0 85.34 SRA Sample Description GCA_900189945.1 category_na live 2017-06-22 UoS2011 PRJEB2417 Annotation submitted by SC SC 41 1078169 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYLD01 2007-11-21 UoS2011 6.10 Prokka current 41 ERS023115 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYLD01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS2011 species_match 98.82 SAMEA3714167 2 Streptococcus pneumoniae 92.29 Streptococcus pneumoniae PRJEB3084 2 na 801480 type Streptococcus pneumoniae 2019-05-11 33F 33F Homo sapiens 2050 Streptococcus pneumoniae Streptococcus pneumoniae ERS1021316 SC 2013 2016-05-25T12:11:00.170 2065428 92.29 1313 2100 Streptococcus pneumoniae 2024-02-06T15:58:46.000 2065500 801480 2065427 blood Homo sapiens IPD from large multi-isolate project ST2705 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901289045.1 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAVVR000000000.1 2016-05-24T10:11:03Z GCA_901289045.1 haploid public 44283be0-41bd-11e5-998e-3c4a9275d6c6 86.86 9 2016-05-25T13:11:56.683 GCA_053203845.1 817883 50 19084_7#14 44283be0-41bd-11e5-998e-3c4a9275d6c6 Qatar 19084_7#14 SAMEA3714167 1313 Generic.1.0 86.86 SRA category_na live 2019-04-18T16:01:14Z GPSC3 PRJEB3084 SC SC 8 2377987 2019-04-18T16:01:14Z 2016-05-24T00:00:00.000 PATH6581 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAVVR01 2013 GPSC3 substr. ST2705 2016-05-24T10:11:03Z Prokka current 8 44283be0-41bd-11e5-998e-3c4a9275d6c6 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAVVR01 Scaffold SOURCE_DATABASE_GENBANK Qatar 2019-05-11 GPSC3 species_match 98.84 SAMEA3389884 2 Streptococcus pneumoniae 91.66 Streptococcus pneumoniae PRJEB3084 2 na 645214 type Streptococcus pneumoniae 2019-05-11 33F 33F Homo sapiens 2022 Streptococcus pneumoniae Streptococcus pneumoniae ERS725987 SC 2013 2016-01-13T08:11:16.553 2062860 91.66 1313 2073 Streptococcus pneumoniae 2024-02-06T15:59:49.000 2062958 563622 2062860 blood Homo sapiens bacteraemia from large multi-isolate project ST12260 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901300015.1 type blood 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAXLQ000000000.1 2016-01-12T09:01:08Z GCA_901300015.1 haploid public GPS_MW_BHA2WF_R1-sc-2296128 86.16 19 2018-03-10T20:15:09 GCA_053203845.1 819305 51 17870_8#126 GPS_MW_BHA2WF_R1-sc-2296128 Malawi 17870_8#126 SAMEA3389884 1313 Generic.1.0 86.16 SRA category_na live 2019-04-18T16:01:31Z GPSC9 PRJEB3084 SC SC 18 2296128 2019-04-18T16:01:31Z 2016-01-12T00:00:00.000 GPS_MW_BHA2WF_R1 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAXLQ01 2013 GPSC9 substr. ST12260 2016-01-12T09:01:08Z Prokka current 18 GPS_MW_BHA2WF_R1-sc-2296128 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAXLQ01 Scaffold SOURCE_DATABASE_GENBANK Malawi 2019-05-11 GPSC9 species_match 98.77 SAMEA3430884 2 Streptococcus pneumoniae 92.33 Streptococcus pneumoniae PRJEB3084 2 na 491217 type Streptococcus pneumoniae 2019-05-11 33F 33F Homo sapiens 2049 Streptococcus pneumoniae Streptococcus pneumoniae ERS740169 SC 2009 2015-12-16T09:08:25.956 2064110 92.33 1313 2099 Streptococcus pneumoniae 2024-02-06T15:55:36.000 2064110 491217 2064110 blood Homo sapiens IPD from large multi-isolate project ST2705 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901269925.1 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAATAX000000000.1 2015-12-15T09:25:20Z GCA_901269925.1 haploid public GPS_US_2010203157_R1-sc-2296405 86.85 12 2018-03-10T20:14:12 GCA_053203845.1 817327 50 17794_7#85 GPS_US_2010203157_R1-sc-2296405 USA 17794_7#85 SAMEA3430884 1313 Generic.1.0 86.85 SRA category_na live 2019-04-18T15:39:30Z GPSC3 PRJEB3084 SC SC 12 2296405 2019-04-18T15:39:30Z 2015-12-15T00:00:00.000 GPS_US_2010203157_R1 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAATAX01 2009 GPSC3 substr. ST2705 2015-12-15T09:25:20Z Prokka current 12 GPS_US_2010203157_R1-sc-2296405 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAATAX01 Contig SOURCE_DATABASE_GENBANK USA 2019-05-11 GPSC3 species_match 98.84 SAMEA3714471 2 Streptococcus pneumoniae 92.28 Streptococcus pneumoniae PRJEB3084 2 na 637500 type Streptococcus pneumoniae 2019-05-11 33F 33F Homo sapiens 2048 Streptococcus pneumoniae Streptococcus pneumoniae ERS1021620 SC 2009 2016-05-25T12:11:18.003 2065754 92.28 1313 2099 Streptococcus pneumoniae 2024-02-06T15:55:36.000 2066199 490379 2065750 blood Homo sapiens Bacteremia from large multi-isolate project ST2705 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901293745.1 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWNQ000000000.1 2016-05-24T10:11:03Z GCA_901293745.1 haploid public 551ebb90-41bd-11e5-998e-3c4a9275d6c6 86.87 13 2016-05-25T13:12:33.607 GCA_053203845.1 817907 51 19084_8#134 551ebb90-41bd-11e5-998e-3c4a9275d6c6 USA 19084_8#134 SAMEA3714471 1313 Generic.1.0 86.87 SRA category_na live 2019-04-18T15:39:31Z GPSC3 PRJEB3084 SC SC 11 2378345 2019-04-18T15:39:31Z 2016-05-24T00:00:00.000 2009210224 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWNQ01 2009 GPSC3 substr. ST2705 2016-05-24T10:11:03Z Prokka current 11 551ebb90-41bd-11e5-998e-3c4a9275d6c6 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWNQ01 Scaffold SOURCE_DATABASE_GENBANK USA 2019-05-11 GPSC3 species_match 98.84 SAMEA3354090 2 Streptococcus pneumoniae 94.59 Streptococcus pneumoniae PRJEB3084 2 suppressed na 454282 type Streptococcus pneumoniae 2019-05-10 33F 33F Homo sapiens 1945 Streptococcus pneumoniae Streptococcus pneumoniae ERS708445 SC 2014 2015-10-14T08:11:10.486 1987797 94.59 1313 1996 Streptococcus pneumoniae 2024-02-06T15:57:31.000 1987808 454282 1987797 blood Homo sapiens IPD from large multi-isolate project ST10068 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901233235.1 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANPV000000000.1 2015-10-13T13:59:40Z GCA_901233235.1 haploid public GPS_ZA_2885-sc-2278696 85.69 23 2018-03-10T20:10:24 GCA_053203845.1 789701 51 17175_8#3 GPS_ZA_2885-sc-2278696 South Africa 17175_8#3 SAMEA3354090 1313 GCF_901233235.1 Generic.1.0 85.69 SRA GCF_901233235.1 category_na live 2019-04-18T15:57:00Z GPSC3 PRJEB3084 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SC SC 22 2278696 2019-04-18T15:57:00Z 2015-10-13T00:00:00.000 42223 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANPV01 2014 GPSC3 substr. ST10068 2015-10-13T13:59:40Z Prokka current 22 GPS_ZA_2885-sc-2278696 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANPV01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC3 species_match 98.85 SAMEA3354090 2 Streptococcus pneumoniae 94.59 Streptococcus pneumoniae PRJEB3084 2 current na Best-placed reference protein set; GeneMarkS-2+ 454282 type Streptococcus pneumoniae This record was removed by RefSeq staff. Please contact info@ncbi.nlm.nih.gov for further details. Reason: surveillance assembly 2019-05-23 33F 33F Homo sapiens 1914 Streptococcus pneumoniae Streptococcus pneumoniae ERS708445 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2014 2015-10-14T08:11:10.486 1987797 94.59 1313 2127 Streptococcus pneumoniae 2024-02-06T15:57:31.000 1987808 454282 blood Homo sapiens IPD from large multi-isolate project 158 ST10068 EBI 100 GCA_053203845.1 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SLX Streptococcus pneumoniae GCF_901233235.1 type blood 98.85 ERC000011 OK Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANPV000000000.1 2015-10-13T13:59:40Z GCF_901233235.1 haploid public GPS_ZA_2885-sc-2278696 85.69 23 2018-03-10T20:10:24 GCA_053203845.1 55 17175_8#3 GPS_ZA_2885-sc-2278696 South Africa 17175_8#3 SAMEA3354090 1313 GCA_901233235.1 Generic.1.0 85.69 SRA GCA_901233235.1 category_na live 2019-04-18T15:57:00Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 22 2278696 2019-04-18T15:57:00Z 2015-10-13T00:00:00.000 42223 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANPV01 2014 GPSC3 substr. ST10068 4.8 2015-10-13T13:59:40Z Prokka suppressed 22 GPS_ZA_2885-sc-2278696 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANPV01 Scaffold SOURCE_DATABASE_REFSEQ South Africa 2019-05-10 GPSC3 species_match 98.85 SAMEA3354300 3 Streptococcus pneumoniae 94.15 Streptococcus pneumoniae PRJEB3084 3 na 307833 type Streptococcus pneumoniae 2019-05-10 33F 33F Homo sapiens 1977 Streptococcus pneumoniae Streptococcus pneumoniae ERS708655 SC 2014 2015-10-14T08:11:16.010 2009541 94.15 1313 2029 Streptococcus pneumoniae 2024-02-06T15:53:16.000 2009541 307833 2009537 blood Homo sapiens IPD from large multi-isolate project ST445 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901330535.1 type blood 98.86 ERC000011 OK 40 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABBYI000000000.1 2015-10-13T13:59:14Z GCA_901330535.1 haploid public GPS_ZA_3069-sc-2278909 86.22 14 2018-03-10T20:10:33 GCA_053203845.1 799062 52 17138_4#18 GPS_ZA_3069-sc-2278909 South Africa 17138_4#18 SAMEA3354300 1313 Generic.1.0 86.22 SRA category_na live 2019-04-18T15:38:58Z GPSC3 PRJEB3084 SC SC 14 2278909 2019-04-18T15:38:58Z 2015-10-13T00:00:00.000 44248 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABBYI01 2014 GPSC3 substr. ST445 2015-10-13T13:59:14Z Prokka current 14 GPS_ZA_3069-sc-2278909 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABBYI01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC3 species_match 98.86 SAMEA3430882 3 Streptococcus pneumoniae 95.52 Streptococcus pneumoniae PRJEB3084 3 na 274022 type Streptococcus pneumoniae 2019-05-10 33F 33F Homo sapiens 1932 Streptococcus pneumoniae Streptococcus pneumoniae ERS740167 SC 2009 2016-01-13T08:11:25.490 1976638 95.52 1313 1982 Streptococcus pneumoniae 2024-02-06T15:55:36.000 1976638 274022 1976637 blood Homo sapiens IPD from large multi-isolate project ST1012 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901309405.1 type blood 98.88 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAYVP000000000.1 2016-01-12T09:01:09Z GCA_901309405.1 haploid public GPS_US_2010202228_R1-sc-2296403 86.05 15 2018-03-10T20:15:20 GCA_053203845.1 785551 50 17966_5#136 GPS_US_2010202228_R1-sc-2296403 USA 17966_5#136 SAMEA3430882 1313 Generic.1.0 86.05 SRA category_na live 2019-04-18T15:39:30Z GPSC3 PRJEB3084 SC SC 15 2296403 2019-04-18T15:39:30Z 2016-01-12T00:00:00.000 GPS_US_2010202228_R1 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAYVP01 2009 GPSC3 substr. ST1012 2016-01-12T09:01:09Z Prokka current 15 GPS_US_2010202228_R1-sc-2296403 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAYVP01 Contig SOURCE_DATABASE_GENBANK USA 2019-05-10 GPSC3 species_match 98.88 SAMEA3714390 4 Streptococcus pneumoniae 95.35 Streptococcus pneumoniae PRJEB3084 4 na 261799 type Streptococcus pneumoniae 2019-05-10 33F 33F Homo sapiens 1928 Streptococcus pneumoniae Streptococcus pneumoniae ERS1021539 SC 2008 2016-05-25T12:11:13.730 1981698 95.35 1313 1977 Streptococcus pneumoniae 2024-02-06T15:58:36.000 1981792 261799 1981697 NP Swab Homo sapiens Carriage from large multi-isolate project ST1012 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901327595.1 type NP Swab 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABBMX000000000.1 2016-05-24T10:11:04Z GCA_901327595.1 haploid public 4e893f30-41bd-11e5-998e-3c4a9275d6c6 86.1 20 2016-05-25T13:12:22.517 GCA_053203845.1 787536 49 19084_8#53 4e893f30-41bd-11e5-998e-3c4a9275d6c6 Peru 19084_8#53 SAMEA3714390 1313 Generic.1.0 86.1 SRA category_na live 2019-04-18T16:01:11Z GPSC3 PRJEB3084 SC SC 18 2378214 2019-04-18T16:01:11Z 2016-05-24T00:00:00.000 PATH3395 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABBMX01 2008 GPSC3 substr. ST1012 2016-05-24T10:11:04Z Prokka current 18 4e893f30-41bd-11e5-998e-3c4a9275d6c6 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABBMX01 Scaffold SOURCE_DATABASE_GENBANK Peru 2019-05-10 GPSC3 species_match 98.87 SAMEA104155066 3 Streptococcus pneumoniae 95.23 Streptococcus pneumoniae PRJEB3084 3 na 257361 type Streptococcus pneumoniae 2019-05-10 33F 33F Homo sapiens 1927 Streptococcus pneumoniae Streptococcus pneumoniae ERS1814084 SC 2008 2017-08-10T16:10:42.623 1973605 95.23 1313 1978 Streptococcus pneumoniae 2024-02-06T15:51:58.000 1973605 2245STDY6655407 257361 1973605 blood Homo sapiens IPD from large multi-isolate project ST13889 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901304355.1 type Streptococcus pneumoniae blood 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAYCD000000000.1 2017-08-08T13:54:43Z GCA_901304355.1 haploid public 90e93d90-c37a-11e6-b158-3c4a9275d6c8 85.65 16 2017-08-10T17:10:55.937 GCA_053203845.1 783755 51 22027_1#91 90e93d90-c37a-11e6-b158-3c4a9275d6c8 Israel 22027_1#91 SAMEA104155066 1313 Generic.1.0 85.65 SRA category_na live 2019-04-18T15:32:24Z GPSC3 PRJEB3084 SC SC 16 2869310 2019-04-18T15:32:24Z 2017-08-08T00:00:00.000 120841 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAYCD01 2008 GPSC3 substr. ST13889 2017-08-08T13:54:43Z Prokka current 16 90e93d90-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAYCD01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-10 GPSC3 species_match 98.83 SAMEA104154914 3 Streptococcus pneumoniae 95.22 Streptococcus pneumoniae PRJEB3084 3 na 253882 type Streptococcus pneumoniae 2019-05-10 33F 33F Homo sapiens 1933 Streptococcus pneumoniae Streptococcus pneumoniae ERS1813932 SC 2005 2017-08-10T16:10:39.220 1986097 95.22 1313 1981 Streptococcus pneumoniae 2024-02-06T15:51:50.000 1986097 2245STDY6655255 253882 1986095 blood Homo sapiens IPD from large multi-isolate project ST2223 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901333785.1 type Streptococcus pneumoniae blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABCKS000000000.1 2017-08-08T13:54:44Z GCA_901333785.1 haploid public 8446d5c0-c37a-11e6-b158-3c4a9275d6c8 86.18 15 2017-08-10T17:10:51.520 GCA_053203845.1 788096 48 22027_1#28 8446d5c0-c37a-11e6-b158-3c4a9275d6c8 Israel 22027_1#28 SAMEA104154914 1313 Generic.1.0 86.18 SRA category_na live 2019-04-18T15:32:22Z GPSC3 PRJEB3084 SC SC 15 2869158 2019-04-18T15:32:22Z 2017-08-08T00:00:00.000 153594 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABCKS01 2005 GPSC3 substr. ST2223 2017-08-08T13:54:44Z Prokka current 15 8446d5c0-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABCKS01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-10 GPSC3 species_match 98.84 SAMEA3714168 4 Streptococcus pneumoniae 94.2 Streptococcus pneumoniae PRJEB3084 4 na 242338 type Streptococcus pneumoniae 2019-05-11 33F 33F Homo sapiens 1983 Streptococcus pneumoniae Streptococcus pneumoniae ERS1021317 SC 2013 2016-05-25T12:11:00.213 2013879 94.2 1313 2033 Streptococcus pneumoniae 2024-02-06T15:58:47.000 2013902 242338 2013879 blood Homo sapiens IPD from large multi-isolate project ST1012 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901289095.1 type blood 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAVVY000000000.1 2016-05-24T10:11:03Z GCA_901289095.1 haploid public 44313c90-41bd-11e5-998e-3c4a9275d6c6 86.45 21 2016-05-25T13:11:56.797 GCA_053203845.1 800143 50 19084_7#15 44313c90-41bd-11e5-998e-3c4a9275d6c6 Qatar 19084_7#15 SAMEA3714168 1313 Generic.1.0 86.45 SRA category_na live 2019-04-18T16:01:14Z GPSC3 PRJEB3084 SC SC 20 2377988 2019-04-18T16:01:14Z 2016-05-24T00:00:00.000 PATH6597 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAVVY01 2013 GPSC3 substr. ST1012 2016-05-24T10:11:03Z Prokka current 20 44313c90-41bd-11e5-998e-3c4a9275d6c6 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAVVY01 Scaffold SOURCE_DATABASE_GENBANK Qatar 2019-05-11 GPSC3 species_match 98.85 SAMEA2796637 3 Streptococcus pneumoniae 92.67 Streptococcus pneumoniae PRJEB3084 4 na 257410 type Streptococcus pneumoniae 2019-05-11 33F 33F Homo sapiens 2027 Streptococcus pneumoniae Streptococcus pneumoniae ERS558248 SC 2005 2015-01-30T08:09:17.240 2046367 92.67 1313 2073 Streptococcus pneumoniae 2024-02-06T15:55:26.000 2048027 242156 2046366 blood Homo sapiens Bacteremia from large multi-isolate project ST100 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901250115.1 type blood 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAQCR000000000.1 2015-01-27T09:20:52Z GCA_901250115.1 haploid public GPS_US_3390_06-sc-2138618 86.42 22 2018-03-10T19:33:01 GCA_053203845.1 811010 46 14673_3#39 GPS_US_3390_06-sc-2138618 USA 14673_3#39 SAMEA2796637 1313 Generic.1.0 86.42 SRA category_na live 2019-04-18T15:39:28Z GPSC3 PRJEB3084 SC SC 15 2138618 2019-04-18T15:39:28Z 2015-01-27T00:00:00.000 3390_06 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAQCR01 2005 GPSC3 substr. ST100 2015-01-27T09:20:52Z Prokka current 15 GPS_US_3390_06-sc-2138618 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAQCR01 Scaffold SOURCE_DATABASE_GENBANK USA 2019-05-11 GPSC3 species_match 98.81 SAMEA4034869 4 Streptococcus pneumoniae 93.05 Streptococcus pneumoniae PRJEB3084 4 na 225124 type Streptococcus pneumoniae 2019-05-11 33F 33F Homo sapiens 2000 Streptococcus pneumoniae Streptococcus pneumoniae ERS1205979 SC 2014 2016-12-15T10:07:17.973 2050026 93.05 1313 2053 Streptococcus pneumoniae 2024-02-06T15:51:48.000 2050026 225124 2050025 CSF Homo sapiens Meningitis from large multi-isolate project ST12815 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901330455.1 type CSF 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABBXX000000000.1 2016-12-13T11:56:01Z GCA_901330455.1 haploid public 3a7de9b0-cfec-11e5-bc69-3c4a9275d6c6 86.93 28 2016-12-15T11:07:16.913 GCA_053203845.1 813230 53 20925_3#19 3a7de9b0-cfec-11e5-bc69-3c4a9275d6c6 India 20925_3#19 SAMEA4034869 1313 Generic.1.0 86.93 SRA category_na live 2019-04-18T15:32:21Z GPSC236 PRJEB3084 SC SC 28 2537122 2019-04-18T15:32:21Z 2016-12-13T00:00:00.000 PIDOPS_40 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABBXX01 2014 GPSC236 substr. ST12815 2016-12-13T11:56:01Z Prokka current 28 3a7de9b0-cfec-11e5-bc69-3c4a9275d6c6 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABBXX01 Contig SOURCE_DATABASE_GENBANK India 2019-05-11 GPSC236 species_match 98.8 SAMEA104154968 3 Streptococcus pneumoniae 95.22 Streptococcus pneumoniae PRJEB3084 3 na 212791 type Streptococcus pneumoniae 2019-05-10 33F 33F Homo sapiens 1932 Streptococcus pneumoniae Streptococcus pneumoniae ERS1813986 SC 2006 2017-08-10T16:10:40.403 1981129 95.22 1313 1982 Streptococcus pneumoniae 2024-02-06T15:51:54.000 1981150 2245STDY6655309 212791 1981128 blood Homo sapiens IPD from large multi-isolate project ST13888 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901303275.1 type Streptococcus pneumoniae blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAXYK000000000.1 2017-08-08T13:54:43Z GCA_901303275.1 haploid public 86ba94e0-c37a-11e6-b158-3c4a9275d6c8 85.97 20 2017-08-10T17:10:53.043 GCA_053203845.1 786446 50 22027_1#82 86ba94e0-c37a-11e6-b158-3c4a9275d6c8 Israel 22027_1#82 SAMEA104154968 1313 Generic.1.0 85.97 SRA category_na live 2019-04-18T15:32:23Z GPSC3 PRJEB3084 SC SC 19 2869212 2019-04-18T15:32:23Z 2017-08-08T00:00:00.000 123020 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAXYK01 2006 GPSC3 substr. ST13888 2017-08-08T13:54:43Z Prokka current 19 86ba94e0-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAXYK01 Scaffold SOURCE_DATABASE_GENBANK Israel 2019-05-10 GPSC3 species_match 98.8 SAMEA3713906 3 Streptococcus pneumoniae 95.64 Streptococcus pneumoniae PRJEB3084 3 na 212560 type Streptococcus pneumoniae 2019-05-10 33F 33F Homo sapiens 1949 Streptococcus pneumoniae Streptococcus pneumoniae ERS1021055 SC 2010 2016-06-15T09:07:17.376 1978300 95.64 1313 2001 Streptococcus pneumoniae 2024-02-06T15:51:34.000 1978337 212560 1978299 NP swab Homo sapiens Carriage from large multi-isolate project ST673 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901307615.1 type NP swab 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAYOT000000000.1 2016-06-14T13:33:03Z GCA_901307615.1 haploid public 389e9710-41bd-11e5-998e-3c4a9275d6c6 89.63 20 2016-06-15T10:09:53.400 GCA_001457635.1 785931 52 19341_2#171 389e9710-41bd-11e5-998e-3c4a9275d6c6 China 19341_2#171 SAMEA3713906 1313 Generic.1.0 89.63 SRA category_na live 2019-04-18T15:32:18Z GPSC3 PRJEB3084 SC SC 20 2377725 2019-04-18T15:32:18Z 2016-06-14T00:00:00.000 GPS_HK_310 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAYOT01 2010 GPSC3 substr. ST673 2016-06-14T13:33:03Z Prokka current 20 389e9710-41bd-11e5-998e-3c4a9275d6c6 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAYOT01 Scaffold SOURCE_DATABASE_GENBANK China 2019-05-10 GPSC3 species_match 98.72 SAMEA104154907 4 Streptococcus pneumoniae 95.47 Streptococcus pneumoniae PRJEB3084 4 na 211678 type Streptococcus pneumoniae 2019-05-10 33F 33F Homo sapiens 1929 Streptococcus pneumoniae Streptococcus pneumoniae ERS1813925 SC 2005 2017-08-10T16:10:39.043 1976747 95.47 1313 1980 Streptococcus pneumoniae 2024-02-06T15:51:49.000 1976747 2245STDY6655247 211678 1976747 blood Homo sapiens IPD from large multi-isolate project ST1012 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901333025.1 type Streptococcus pneumoniae blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABCHW000000000.1 2017-08-08T13:54:42Z GCA_901333025.1 haploid public 83c8a510-c37a-11e6-b158-3c4a9275d6c8 86.0 21 2017-08-10T17:10:51.323 GCA_053203845.1 785753 51 22027_1#20 83c8a510-c37a-11e6-b158-3c4a9275d6c8 Israel 22027_1#20 SAMEA104154907 1313 Generic.1.0 86.0 SRA category_na live 2019-04-18T15:32:22Z GPSC3 PRJEB3084 SC SC 21 2869150 2019-04-18T15:32:22Z 2017-08-08T00:00:00.000 138276 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABCHW01 2005 GPSC3 substr. ST1012 2017-08-08T13:54:42Z Prokka current 21 83c8a510-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABCHW01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-10 GPSC3 species_match 98.86 SAMEA3175682 2 Streptococcus pneumoniae 92.88 Streptococcus pneumoniae PRJEB3084 5 na 358794 type Streptococcus pneumoniae 2019-05-11 33F 33F Homo sapiens 2011 Streptococcus pneumoniae Streptococcus pneumoniae ERS628630 SC 1999 2015-05-13T13:08:30.236 2040795 92.88 1313 2057 Streptococcus pneumoniae 2024-02-06T15:55:32.000 2044393 149484 2040795 blood Homo sapiens Bacteremia from large multi-isolate project ST100 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901305205.1 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAYFN000000000.1 2015-05-12T09:14:26Z GCA_901305205.1 haploid public GPS_US_2204_00_R1-sc-2190731 86.38 30 2018-03-10T19:47:56 GCA_053203845.1 809089 46 15608_2#37 GPS_US_2204_00_R1-sc-2190731 USA 15608_2#37 SAMEA3175682 1313 Generic.1.0 86.38 SRA category_na live 2019-04-18T15:39:29Z GPSC3 PRJEB3084 SC SC 18 2190731 2019-04-18T15:39:29Z 2015-05-12T00:00:00.000 2204_00 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAYFN01 1999 GPSC3 substr. ST100 2015-05-12T09:14:26Z Prokka current 18 GPS_US_2204_00_R1-sc-2190731 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAYFN01 Scaffold SOURCE_DATABASE_GENBANK USA 2019-05-11 GPSC3 species_match 98.84 SAMEA3175703 3 Streptococcus pneumoniae 92.63 Streptococcus pneumoniae PRJEB3084 4 na 279809 type Streptococcus pneumoniae 2019-05-11 33F 33F Homo sapiens 2009 Streptococcus pneumoniae Streptococcus pneumoniae ERS628651 SC 1999 2015-05-13T13:08:31.936 2038061 92.63 1313 2055 Streptococcus pneumoniae 2024-02-06T15:55:32.000 2040407 147536 2038060 blood Homo sapiens Bacteremia from large multi-isolate project ST12754 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901306825.1 type blood 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAYLO000000000.1 2015-05-12T09:14:26Z GCA_901306825.1 haploid public GPS_US_1457_00_R1-sc-2190752 86.03 31 2018-03-10T19:47:57 GCA_053203845.1 808282 46 15608_2#58 GPS_US_1457_00_R1-sc-2190752 USA 15608_2#58 SAMEA3175703 1313 Generic.1.0 86.03 SRA category_na live 2019-04-18T15:39:30Z GPSC3 PRJEB3084 SC SC 23 2190752 2019-04-18T15:39:30Z 2015-05-12T00:00:00.000 1457_00 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAYLO01 1999 GPSC3 substr. ST12754 2015-05-12T09:14:26Z Prokka current 23 GPS_US_1457_00_R1-sc-2190752 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAYLO01 Scaffold SOURCE_DATABASE_GENBANK USA 2019-05-11 GPSC3 species_match 98.81 SAMEA3172993 5 Streptococcus pneumoniae 93.85 Streptococcus pneumoniae PRJEB3084 6 na 182208 type Streptococcus pneumoniae 2019-05-11 33F 33F Homo sapiens 1962 Streptococcus pneumoniae Streptococcus pneumoniae ERS627236 SC 2014 2015-05-07T17:09:38.690 2001143 93.85 1313 2007 Streptococcus pneumoniae 2024-02-06T15:53:48.000 2003465 146057 2001143 blood Homo sapiens Pneumonia from large multi-isolate project ST445 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901334645.1 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABCOA000000000.1 2015-05-06T09:17:00Z GCA_901334645.1 haploid public GPS_GM_1137-sc-2190552 85.58 28 2018-03-10T19:47:00 GCA_053203845.1 795194 45 15531_6#50 GPS_GM_1137-sc-2190552 Gambia 15531_6#50 SAMEA3172993 1313 Generic.1.0 85.58 SRA category_na live 2019-04-18T15:39:05Z GPSC3 PRJEB3084 SC SC 20 2190552 2019-04-18T15:39:05Z 2015-05-06T00:00:00.000 BS20566I1 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABCOA01 2014 GPSC3 substr. ST445 2015-05-06T09:17:00Z Prokka current 20 GPS_GM_1137-sc-2190552 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABCOA01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-11 GPSC3 species_match 98.86 SAMEA2521553 2 Streptococcus pneumoniae 92.52 Streptococcus pneumoniae 1313 PRJEB3084 3 current na 622245 type Streptococcus pneumoniae 2019-05-11 33F 33F species Homo sapiens 2030 Streptococcus pneumoniae Streptococcus pneumoniae ERS455093 SC 2012 v1.2.4 2014-09-17T09:08:12.640 98.88 2047373 92.52 1313 2076 Streptococcus pneumoniae 2024-02-06T15:55:06.000 2049036 257537 2047371 blood Homo sapiens Streptococcus pneumoniae IPD ST100 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900052755.2 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 39.3061 https://www.ncbi.nlm.nih.gov/nuccore/FHQC00000000.2 2014-09-16T09:22:32Z GCA_900052755.2 haploid public 2012212663-sc-1946845 86.32 0.31 22 2018-03-10T19:14:16 GCA_053203845.1 811427 46 13414_2#2 2012212663-sc-1946845 USA 13414_2#2 SAMEA2521553 1313 GCF_900052755.2 Generic.1.0 86.32 SRA GCF_900052755.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 GCF_900052755.2-RS_2025_12_30 SC SC 16 1946845 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012212663 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQC02 2012 2245STDY5819519 2014-09-16T09:22:32Z Prokka current 16 2012212663-sc-1946845 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQC02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC3 species_match 98.82 SAMEA2521553 2 Streptococcus pneumoniae 92.52 Streptococcus pneumoniae 1313 PRJEB3084 3 current na Best-placed reference protein set; GeneMarkS-2+ 622245 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-30 33F 33F species Homo sapiens 1913 Streptococcus pneumoniae Streptococcus pneumoniae ERS455093 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:12.640 98.88 2047373 92.52 1313 2130 Streptococcus pneumoniae 2024-02-06T15:55:06.000 2049036 257537 2047371 blood Homo sapiens Streptococcus pneumoniae IPD 166 ST100 EBI 100 GCA_053203845.1 GCF_900052755.2-RS_2025_12_30 SLX Streptococcus pneumoniae GCF_900052755.2 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 39.3061 https://www.ncbi.nlm.nih.gov/nuccore/FHQC00000000.2 2014-09-16T09:22:32Z GCF_900052755.2 haploid public 2012212663-sc-1946845 86.32 0.31 22 2018-03-10T19:14:16 GCA_053203845.1 811427 51 13414_2#2 2012212663-sc-1946845 USA 13414_2#2 SAMEA2521553 1313 GCA_900052755.2 Generic.1.0 86.32 SRA GCA_900052755.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 16 1946845 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012212663 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQC02 2012 GPSC3 substr. ST100 6.10 2014-09-16T09:22:32Z Prokka current 16 2012212663-sc-1946845 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQC02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC3 species_match 98.82 SAMEA2521619 2 Streptococcus pneumoniae 92.37 Streptococcus pneumoniae 1313 PRJEB3084 5 current na 432820 type Streptococcus pneumoniae 2019-05-11 33F 33F species Homo sapiens 2081 Streptococcus pneumoniae Streptococcus pneumoniae ERS455159 SC 2012 v1.2.4 2014-09-17T09:08:14.860 98.94 2082471 92.37 1313 2128 Streptococcus pneumoniae 2024-02-06T15:55:08.000 2086086 204555 2082469 blood Homo sapiens Streptococcus pneumoniae IPD ST100 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900060885.2 type blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FHSD00000000.2 2014-09-16T09:22:32Z GCA_900060885.2 haploid public 2012219980-sc-1946911 87.66 0.31 31 2015-08-10T19:57:10 GCA_053203845.1 825728 47 13414_2#68 2012219980-sc-1946911 USA 13414_2#68 SAMEA2521619 1313 GCF_900060885.2 Generic.1.0 87.66 SRA GCF_900060885.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 GCF_900060885.2-RS_2025_12_27 SC SC 20 1946911 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012219980 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSD02 2012 2245STDY5819585 2014-09-16T09:22:32Z Prokka current 20 2012219980-sc-1946911 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSD02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC3 species_match 98.79 SAMEA2521619 2 Streptococcus pneumoniae 92.37 Streptococcus pneumoniae 1313 PRJEB3084 5 current na Best-placed reference protein set; GeneMarkS-2+ 432820 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-27 33F 33F species Homo sapiens 1977 Streptococcus pneumoniae Streptococcus pneumoniae ERS455159 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:14.860 98.94 2082471 92.37 1313 2186 Streptococcus pneumoniae 2024-02-06T15:55:08.000 2086086 204555 2082469 blood Homo sapiens Streptococcus pneumoniae IPD 156 ST100 EBI 100 GCA_053203845.1 GCF_900060885.2-RS_2025_12_27 SLX Streptococcus pneumoniae GCF_900060885.2 type blood 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FHSD00000000.2 2014-09-16T09:22:32Z GCF_900060885.2 haploid public 2012219980-sc-1946911 87.66 0.31 31 2015-08-10T19:57:10 GCA_053203845.1 825728 53 13414_2#68 2012219980-sc-1946911 USA 13414_2#68 SAMEA2521619 1313 GCA_900060885.2 Generic.1.0 87.66 SRA GCA_900060885.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 20 1946911 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012219980 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSD02 2012 GPSC3 substr. ST100 6.10 2014-09-16T09:22:32Z Prokka current 20 2012219980-sc-1946911 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSD02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC3 species_match 98.79 SAMEA2674715 2 Streptococcus pneumoniae 92.72 Streptococcus pneumoniae 1313 PRJEB4909 4 current na 469080 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2016 Streptococcus pneumoniae Streptococcus pneumoniae ERS515230 SC 2006/2012 v1.2.4 2015-01-29T08:41:19.493 98.94 2037645 92.72 1313 2062 2024-02-06T09:01:56.000 2040145 194275 2037638 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900032005.1 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FEPE00000000.1 2015-01-08T09:41:19Z GCA_900032005.1 haploid public 2000180_II-sc-2020068 86.09 0.31 26 2015-08-11T21:54:01 GCA_053203845.1 808062 46 14412_3#70 2000180_II-sc-2020068 Netherlands 14412_3#70 SAMEA2674715 1313 GCF_900032005.1 Generic.1.0 86.09 SRA GCF_900032005.1 category_na live 2018-03-09T11:38:20Z 2842STDY5881953 PRJEB4909 GCF_900032005.1-RS_2026_01_25 SC SC 18 2020068 2018-03-09T11:38:20Z 2015-01-08T00:00:00.000 2000180_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEPE01 2006/2012 2842STDY5881953 2015-01-08T09:41:19Z Prokka current 18 2000180_II-sc-2020068 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEPE01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5881953 species_match 98.82 SAMEA2674715 2 Streptococcus pneumoniae 92.72 Streptococcus pneumoniae 1313 PRJEB4909 4 current na Best-placed reference protein set; GeneMarkS-2+ 469080 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1919 Streptococcus pneumoniae Streptococcus pneumoniae ERS515230 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2015-01-29T08:41:19.493 98.94 2037645 92.72 1313 2126 2024-02-06T09:01:56.000 2040145 194275 2037638 blood Homo sapiens Streptococcus pneumoniae Disease 156 EBI 100 GCA_053203845.1 GCF_900032005.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900032005.1 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FEPE00000000.1 2015-01-08T09:41:19Z GCF_900032005.1 haploid public 2000180_II-sc-2020068 86.09 0.31 26 2015-08-11T21:54:01 GCA_053203845.1 808062 51 14412_3#70 2000180_II-sc-2020068 Netherlands 14412_3#70 SAMEA2674715 1313 GCA_900032005.1 Generic.1.0 86.09 SRA GCA_900032005.1 category_na live 2018-03-09T11:38:20Z 2842STDY5881953 PRJEB4909 Annotation submitted by SC SC SC 18 2020068 2018-03-09T11:38:20Z 2015-01-08T00:00:00.000 2000180_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEPE01 2006/2012 2842STDY5881953 6.10 2015-01-08T09:41:19Z Prokka current 18 2000180_II-sc-2020068 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEPE01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5881953 species_match 98.82 SAMEA2383055 4 Streptococcus pneumoniae 93.0 Streptococcus pneumoniae 1313 PRJEB4909 5 current na 195372 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1966 Streptococcus pneumoniae Streptococcus pneumoniae ERS409380 SC 2006/2012 v1.2.4 2014-07-17T08:09:29.776 98.94 2020299 93.0 1313 2010 2024-02-06T06:50:20.000 2021941 190411 2020298 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900032965.1 type blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FEFZ00000000.1 2014-07-16T11:40:11Z GCA_900032965.1 haploid public 2091775_II-sc-1870305 85.62 0.31 27 2015-08-10T19:44:16 GCA_053203845.1 801119 44 12754_2#35 2091775_II-sc-1870305 Netherlands 12754_2#35 SAMEA2383055 1313 GCF_900032965.1 Generic.1.0 85.62 SRA GCF_900032965.1 category_na live 2018-03-09T10:42:13Z 2842STDY5753600 PRJEB4909 GCF_900032965.1-RS_2025_09_21 SC SC 20 1870305 2018-03-09T10:42:13Z 2014-07-16T00:00:00.000 2091775_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEFZ01 2006/2012 2842STDY5753600 2014-07-16T11:40:11Z Prokka current 20 2091775_II-sc-1870305 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEFZ01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753600 species_match 98.8 SAMEA2383055 4 Streptococcus pneumoniae 93.0 Streptococcus pneumoniae 1313 PRJEB4909 5 current na Best-placed reference protein set; GeneMarkS-2+ 195372 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1875 Streptococcus pneumoniae Streptococcus pneumoniae ERS409380 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:29.776 98.94 2020299 93.0 1313 2080 2024-02-06T06:50:20.000 2021941 190411 2020298 blood Homo sapiens Streptococcus pneumoniae Disease 156 EBI 100 GCA_053203845.1 GCF_900032965.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900032965.1 type blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FEFZ00000000.1 2014-07-16T11:40:11Z GCF_900032965.1 haploid public 2091775_II-sc-1870305 85.62 0.31 27 2015-08-10T19:44:16 GCA_053203845.1 801119 49 12754_2#35 2091775_II-sc-1870305 Netherlands 12754_2#35 SAMEA2383055 1313 GCA_900032965.1 Generic.1.0 85.62 SRA GCA_900032965.1 category_na live 2018-03-09T10:42:13Z 2842STDY5753600 PRJEB4909 Annotation submitted by SC SC SC 20 1870305 2018-03-09T10:42:13Z 2014-07-16T00:00:00.000 2091775_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEFZ01 2006/2012 2842STDY5753600 6.10 2014-07-16T11:40:11Z Prokka current 20 2091775_II-sc-1870305 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEFZ01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753600 species_match 98.8 SAMEA2382962 4 Streptococcus pneumoniae 92.68 Streptococcus pneumoniae 1313 PRJEB4909 4 current na 190078 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2009 Streptococcus pneumoniae Streptococcus pneumoniae ERS409287 SC 2006/2012 v1.2.4 2014-07-17T08:09:25.473 98.94 2038641 92.68 1313 2056 2024-02-06T06:48:42.000 2040589 190078 2038634 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900035045.1 type blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FDNC00000000.1 2014-07-16T11:40:11Z GCA_900035045.1 haploid public 2080611_II-sc-1870211 86.1 0.31 34 2015-08-10T19:44:11 GCA_053203845.1 808493 47 12754_1#37 2080611_II-sc-1870211 Netherlands 12754_1#37 SAMEA2382962 1313 GCF_900035045.1 Generic.1.0 86.1 SRA GCF_900035045.1 category_na live 2018-03-09T10:41:54Z 2842STDY5753506 PRJEB4909 GCF_900035045.1-RS_2026_01_25 SC SC 27 1870211 2018-03-09T10:41:54Z 2014-07-16T00:00:00.000 2080611_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDNC01 2006/2012 2842STDY5753506 2014-07-16T11:40:11Z Prokka current 27 2080611_II-sc-1870211 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDNC01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753506 species_match 98.8 SAMEA2382962 4 Streptococcus pneumoniae 92.68 Streptococcus pneumoniae 1313 PRJEB4909 4 current na Best-placed reference protein set; GeneMarkS-2+ 190078 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1921 Streptococcus pneumoniae Streptococcus pneumoniae ERS409287 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:25.473 98.94 2038641 92.68 1313 2129 2024-02-06T06:48:42.000 2040589 190078 2038634 blood Homo sapiens Streptococcus pneumoniae Disease 156 EBI 100 GCA_053203845.1 GCF_900035045.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900035045.1 type blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FDNC00000000.1 2014-07-16T11:40:11Z GCF_900035045.1 haploid public 2080611_II-sc-1870211 86.1 0.31 34 2015-08-10T19:44:11 GCA_053203845.1 808493 52 12754_1#37 2080611_II-sc-1870211 Netherlands 12754_1#37 SAMEA2382962 1313 GCA_900035045.1 Generic.1.0 86.1 SRA GCA_900035045.1 category_na live 2018-03-09T10:41:54Z 2842STDY5753506 PRJEB4909 Annotation submitted by SC SC SC 27 1870211 2018-03-09T10:41:54Z 2014-07-16T00:00:00.000 2080611_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDNC01 2006/2012 2842STDY5753506 6.10 2014-07-16T11:40:11Z Prokka current 27 2080611_II-sc-1870211 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDNC01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753506 species_match 98.8 SAMEA2521625 3 Streptococcus pneumoniae 92.58 Streptococcus pneumoniae 1313 PRJEB3084 5 current na 264758 type Streptococcus pneumoniae 2019-05-11 33F 33F species Homo sapiens 2026 Streptococcus pneumoniae Streptococcus pneumoniae ERS455165 SC 2012 v1.2.4 2014-09-17T09:08:15.103 98.24 2047645 92.58 1313 2072 Streptococcus pneumoniae 2024-02-06T15:55:09.000 2049282 186053 2047644 blood Homo sapiens Streptococcus pneumoniae IPD ST7507 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900061845.2 type blood 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 13.0593 https://www.ncbi.nlm.nih.gov/nuccore/FHSI00000000.2 2014-09-16T09:22:33Z GCA_900061845.2 haploid public 2012218036-sc-1946917 86.39 0.31 21 2018-03-10T19:14:19 GCA_053203845.1 811473 46 13414_2#74 2012218036-sc-1946917 USA 13414_2#74 SAMEA2521625 1313 GCF_900061845.2 Generic.1.0 86.39 SRA GCF_900061845.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 GCF_900061845.2-RS_2025_12_30 SC SC 14 1946917 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012218036 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSI02 2012 2245STDY5819591 2014-09-16T09:22:33Z Prokka current 14 2012218036-sc-1946917 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSI02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC3 species_match 98.75 SAMEA2521625 3 Streptococcus pneumoniae 92.58 Streptococcus pneumoniae 1313 PRJEB3084 5 current na Best-placed reference protein set; GeneMarkS-2+ 264758 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-30 33F 33F species Homo sapiens 1910 Streptococcus pneumoniae Streptococcus pneumoniae ERS455165 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:15.103 98.24 2047645 92.58 1313 2125 Streptococcus pneumoniae 2024-02-06T15:55:09.000 2049282 186053 2047644 blood Homo sapiens Streptococcus pneumoniae IPD 164 ST7507 EBI 100 GCA_053203845.1 GCF_900061845.2-RS_2025_12_30 SLX Streptococcus pneumoniae GCF_900061845.2 type blood 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 13.0593 https://www.ncbi.nlm.nih.gov/nuccore/FHSI00000000.2 2014-09-16T09:22:33Z GCF_900061845.2 haploid public 2012218036-sc-1946917 86.39 0.31 21 2018-03-10T19:14:19 GCA_053203845.1 811473 51 13414_2#74 2012218036-sc-1946917 USA 13414_2#74 SAMEA2521625 1313 GCA_900061845.2 Generic.1.0 86.39 SRA GCA_900061845.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 14 1946917 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012218036 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSI02 2012 GPSC3 substr. ST7507 6.10 2014-09-16T09:22:33Z Prokka current 14 2012218036-sc-1946917 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSI02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC3 species_match 98.75 SAMEA2238858 3 Streptococcus pneumoniae 93.0 Streptococcus pneumoniae 1313 PRJEB4909 4 current na 263055 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1963 Streptococcus pneumoniae Streptococcus pneumoniae ERS367670 SC 2006/2012 v1.2.4 2014-05-07T08:35:02.056 98.94 2019108 93.0 1313 2011 2024-02-06T05:27:06.000 2021608 158771 2019106 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900040015.1 type CSF 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FCUW00000000.1 2014-03-18T09:35:30Z GCA_900040015.1 haploid public 2110087-sc-2013-11-05T12:03:54Z-1750222 85.57 0.31 31 2015-08-10T19:24:29 GCA_053203845.1 800643 48 11861_3#3 2110087-sc-2013-11-05T12:03:54Z-1750222 Netherlands 11861_3#3 SAMEA2238858 1313 GCF_900040015.1 Generic.1.0 85.57 SRA GCF_900040015.1 category_na live 2018-03-09T10:30:30Z 2842STDY5644233 PRJEB4909 GCF_900040015.1-RS_2025_09_21 SC SC 22 1750222 2018-03-09T10:30:30Z 2014-03-18T00:00:00.000 2110087 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUW01 2006/2012 2842STDY5644233 2014-03-18T09:35:30Z Prokka current 22 2110087-sc-2013-11-05T12:03:54Z-1750222 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUW01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644233 species_match 98.8 SAMEA2238858 3 Streptococcus pneumoniae 93.0 Streptococcus pneumoniae 1313 PRJEB4909 4 current na Best-placed reference protein set; GeneMarkS-2+ 263055 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1867 Streptococcus pneumoniae Streptococcus pneumoniae ERS367670 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:02.056 98.94 2019108 93.0 1313 2077 2024-02-06T05:27:06.000 2021608 158771 2019106 CSF Homo sapiens Streptococcus pneumoniae Disease 157 EBI 100 GCA_053203845.1 GCF_900040015.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900040015.1 type CSF 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FCUW00000000.1 2014-03-18T09:35:30Z GCF_900040015.1 haploid public 2110087-sc-2013-11-05T12:03:54Z-1750222 85.57 0.31 31 2015-08-10T19:24:29 GCA_053203845.1 800643 53 11861_3#3 2110087-sc-2013-11-05T12:03:54Z-1750222 Netherlands 11861_3#3 SAMEA2238858 1313 GCA_900040015.1 Generic.1.0 85.57 SRA GCA_900040015.1 category_na live 2018-03-09T10:30:30Z 2842STDY5644233 PRJEB4909 Annotation submitted by SC SC SC 22 1750222 2018-03-09T10:30:30Z 2014-03-18T00:00:00.000 2110087 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUW01 2006/2012 2842STDY5644233 6.10 2014-03-18T09:35:30Z Prokka current 22 2110087-sc-2013-11-05T12:03:54Z-1750222 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUW01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644233 species_match 98.8 SAMEA2382914 3 Streptococcus pneumoniae 93.9 Streptococcus pneumoniae 1313 PRJEB4909 5 current na 247628 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1953 Streptococcus pneumoniae Streptococcus pneumoniae ERS409239 SC 2006/2012 v1.2.4 2014-07-10T08:06:51.480 98.92 2002615 93.9 1313 2000 2024-02-06T06:48:00.000 2004829 148828 2002614 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900030255.1 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 42.1996 https://www.ncbi.nlm.nih.gov/nuccore/FDLJ00000000.1 2014-07-09T17:25:44Z GCA_900030255.1 haploid public 2071408_II-sc-1870162 85.7 0.31 31 2018-03-10T19:06:03 GCA_053203845.1 794278 47 12718_5#84 2071408_II-sc-1870162 Netherlands 12718_5#84 SAMEA2382914 1313 GCF_900030255.1 Generic.1.0 85.7 SRA GCF_900030255.1 category_na live 2018-03-09T10:41:47Z 2842STDY5753457 PRJEB4909 GCF_900030255.1-RS_2026_01_25 SC SC 20 1870162 2018-03-09T10:41:47Z 2014-07-09T00:00:00.000 2071408_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDLJ01 2006/2012 2842STDY5753457 2014-07-09T17:25:44Z Prokka current 20 2071408_II-sc-1870162 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDLJ01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753457 species_match 98.82 SAMEA2382914 3 Streptococcus pneumoniae 93.9 Streptococcus pneumoniae 1313 PRJEB4909 5 current na Best-placed reference protein set; GeneMarkS-2+ 247628 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1859 Streptococcus pneumoniae Streptococcus pneumoniae ERS409239 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-10T08:06:51.480 98.92 2002615 93.9 1313 2067 2024-02-06T06:48:00.000 2004829 148828 2002614 blood Homo sapiens Streptococcus pneumoniae Disease 156 EBI 100 GCA_053203845.1 GCF_900030255.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900030255.1 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 42.1996 https://www.ncbi.nlm.nih.gov/nuccore/FDLJ00000000.1 2014-07-09T17:25:44Z GCF_900030255.1 haploid public 2071408_II-sc-1870162 85.7 0.31 31 2018-03-10T19:06:03 GCA_053203845.1 794278 52 12718_5#84 2071408_II-sc-1870162 Netherlands 12718_5#84 SAMEA2382914 1313 GCA_900030255.1 Generic.1.0 85.7 SRA GCA_900030255.1 category_na live 2018-03-09T10:41:47Z 2842STDY5753457 PRJEB4909 Annotation submitted by SC SC SC 20 1870162 2018-03-09T10:41:47Z 2014-07-09T00:00:00.000 2071408_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDLJ01 2006/2012 2842STDY5753457 6.10 2014-07-09T17:25:44Z Prokka current 20 2071408_II-sc-1870162 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDLJ01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753457 species_match 98.82 SAMEA2521608 2 Streptococcus pneumoniae 92.74 Streptococcus pneumoniae 1313 PRJEB3084 5 current na 360003 type Streptococcus pneumoniae 2019-05-11 33F 33F species Homo sapiens 2024 Streptococcus pneumoniae Streptococcus pneumoniae ERS455148 SC 2012 v1.2.4 2014-09-17T09:08:14.423 98.32 2043350 92.74 1313 2070 Streptococcus pneumoniae 2024-02-06T15:55:08.000 2047906 146978 2043350 blood Homo sapiens Streptococcus pneumoniae IPD ST100 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900057655.2 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 14.0452 https://www.ncbi.nlm.nih.gov/nuccore/FHRR00000000.2 2014-09-16T09:22:32Z GCA_900057655.2 haploid public 2012220659-sc-1946900 86.36 0.31 28 2015-08-10T19:57:09 GCA_053203845.1 809835 46 13414_2#57 2012220659-sc-1946900 USA 13414_2#57 SAMEA2521608 1313 GCF_900057655.2 Generic.1.0 86.36 SRA GCF_900057655.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 GCF_900057655.2-RS_2025_12_28 SC SC 14 1946900 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012220659 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHRR02 2012 2245STDY5819574 2014-09-16T09:22:32Z Prokka current 14 2012220659-sc-1946900 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHRR02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC3 species_match 98.84 SAMEA2521608 2 Streptococcus pneumoniae 92.74 Streptococcus pneumoniae 1313 PRJEB3084 5 current na Best-placed reference protein set; GeneMarkS-2+ 360003 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-28 33F 33F species Homo sapiens 1919 Streptococcus pneumoniae Streptococcus pneumoniae ERS455148 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:14.423 98.32 2043350 92.74 1313 2128 Streptococcus pneumoniae 2024-02-06T15:55:08.000 2047906 146978 2043350 blood Homo sapiens Streptococcus pneumoniae IPD 157 ST100 EBI 100 GCA_053203845.1 GCF_900057655.2-RS_2025_12_28 SLX Streptococcus pneumoniae GCF_900057655.2 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 14.0452 https://www.ncbi.nlm.nih.gov/nuccore/FHRR00000000.2 2014-09-16T09:22:32Z GCF_900057655.2 haploid public 2012220659-sc-1946900 86.36 0.31 28 2015-08-10T19:57:09 GCA_053203845.1 809835 52 13414_2#57 2012220659-sc-1946900 USA 13414_2#57 SAMEA2521608 1313 GCA_900057655.2 Generic.1.0 86.36 SRA GCA_900057655.2 category_na live 2019-04-18T15:39:23Z GPSC3 PRJEB3084 Annotation submitted by SC SC SC 14 1946900 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012220659 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHRR02 2012 GPSC3 substr. ST100 6.10 2014-09-16T09:22:32Z Prokka current 14 2012220659-sc-1946900 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHRR02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC3 species_match 98.84 SAMEA2382605 3 Streptococcus pneumoniae 95.61 Streptococcus pneumoniae 1313 PRJEB4909 5 current na 252692 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1943 Streptococcus pneumoniae Streptococcus pneumoniae ERS408930 SC 2006/2012 v1.2.4 2014-07-03T08:07:02.266 99.15 1975124 95.61 1313 1988 2024-02-06T06:46:10.000 1977030 146313 1975124 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900032865.1 type CSF 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FCYJ00000000.1 2014-07-02T15:07:58Z GCA_900032865.1 haploid public 2120994-sc-1869850 89.46 0.31 28 2015-08-10T19:42:11 GCA_001457635.1 784588 45 12673_6#60 2120994-sc-1869850 Netherlands 12673_6#60 SAMEA2382605 1313 GCF_900032865.1 Generic.1.0 89.46 SRA GCF_900032865.1 category_na live 2018-03-09T10:41:25Z 2842STDY5753145 PRJEB4909 GCF_900032865.1-RS_2025_09_21 SC SC 20 1869850 2018-03-09T10:41:25Z 2014-07-02T00:00:00.000 2120994 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCYJ01 2006/2012 2842STDY5753145 2014-07-02T15:07:58Z Prokka current 20 2120994-sc-1869850 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCYJ01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753145 species_match 98.71 SAMEA2382605 3 Streptococcus pneumoniae 95.61 Streptococcus pneumoniae 1313 PRJEB4909 5 current na Best-placed reference protein set; GeneMarkS-2+ 252692 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1846 Streptococcus pneumoniae Streptococcus pneumoniae ERS408930 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-03T08:07:02.266 99.15 1975124 95.61 1313 2056 2024-02-06T06:46:10.000 1977030 146313 1975124 CSF Homo sapiens Streptococcus pneumoniae Disease 159 EBI 100 GCA_001457635.1 GCF_900032865.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900032865.1 type CSF 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/FCYJ00000000.1 2014-07-02T15:07:58Z GCF_900032865.1 haploid public 2120994-sc-1869850 89.46 0.31 28 2015-08-10T19:42:11 GCA_001457635.1 784588 51 12673_6#60 2120994-sc-1869850 Netherlands 12673_6#60 SAMEA2382605 1313 GCA_900032865.1 Generic.1.0 89.46 SRA GCA_900032865.1 category_na live 2018-03-09T10:41:25Z 2842STDY5753145 PRJEB4909 Annotation submitted by SC SC SC 20 1869850 2018-03-09T10:41:25Z 2014-07-02T00:00:00.000 2120994 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCYJ01 2006/2012 2842STDY5753145 6.10 2014-07-02T15:07:58Z Prokka current 20 2120994-sc-1869850 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCYJ01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753145 species_match 98.71 SAMEA2382839 3 Streptococcus pneumoniae 91.88 Streptococcus pneumoniae 1313 PRJEB4909 4 current na 190170 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2025 Streptococcus pneumoniae Streptococcus pneumoniae ERS409164 SC 2006/2012 v1.2.4 2014-07-10T08:06:48.120 98.79 2053238 91.88 1313 2073 2024-02-06T06:47:13.000 2055195 154089 2053237 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900024135.1 type blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 32.4307 https://www.ncbi.nlm.nih.gov/nuccore/FDIU00000000.1 2014-07-09T17:25:44Z GCA_900024135.1 haploid public 2061532_II-sc-1870087 85.97 0.31 28 2015-08-10T19:43:37 GCA_053203845.1 814423 48 12718_5#9 2061532_II-sc-1870087 Netherlands 12718_5#9 SAMEA2382839 1313 GCF_900024135.1 Generic.1.0 85.97 SRA GCF_900024135.1 category_na live 2018-03-09T10:41:36Z 2842STDY5753382 PRJEB4909 GCF_900024135.1-RS_2026_01_11 SC SC 21 1870087 2018-03-09T10:41:36Z 2014-07-09T00:00:00.000 2061532_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDIU01 2006/2012 2842STDY5753382 2014-07-09T17:25:44Z Prokka current 21 2061532_II-sc-1870087 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDIU01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753382 species_match 98.8 SAMEA2382839 3 Streptococcus pneumoniae 91.88 Streptococcus pneumoniae 1313 PRJEB4909 4 current na Best-placed reference protein set; GeneMarkS-2+ 190170 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1916 Streptococcus pneumoniae Streptococcus pneumoniae ERS409164 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-10T08:06:48.120 98.79 2053238 91.88 1313 2133 2024-02-06T06:47:13.000 2055195 154089 2053237 blood Homo sapiens Streptococcus pneumoniae Disease 162 EBI 100 GCA_053203845.1 GCF_900024135.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900024135.1 type blood 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 32.4307 https://www.ncbi.nlm.nih.gov/nuccore/FDIU00000000.1 2014-07-09T17:25:44Z GCF_900024135.1 haploid public 2061532_II-sc-1870087 85.97 0.31 28 2015-08-10T19:43:37 GCA_053203845.1 814423 55 12718_5#9 2061532_II-sc-1870087 Netherlands 12718_5#9 SAMEA2382839 1313 GCA_900024135.1 Generic.1.0 85.97 SRA GCA_900024135.1 category_na live 2018-03-09T10:41:36Z 2842STDY5753382 PRJEB4909 Annotation submitted by SC SC SC 21 1870087 2018-03-09T10:41:36Z 2014-07-09T00:00:00.000 2061532_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDIU01 2006/2012 2842STDY5753382 6.10 2014-07-09T17:25:44Z Prokka current 21 2061532_II-sc-1870087 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDIU01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753382 species_match 98.8 SAMEA1025428 5 Streptococcus pneumoniae 93.71 Streptococcus pneumoniae 1313 PRJEB2395 5 current na 135634 type Streptococcus pneumoniae 2015-07-17 35C 35C species Homo sapiens 1988 Streptococcus pneumoniae Streptococcus pneumoniae ERS020883 SC 2009-03-24 v1.2.4 2012-01-20T19:57:35.326 99.31 2014971 93.71 1313 2029 2024-02-06T09:04:13.000 2014971 135634 2014962 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001144765.1 type nasopharynx 98.87 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CQVK00000000.1 2011-11-15T09:28:16Z GCA_001144765.1 haploid public SMRU1373-sc-2011-01-27-1061586 86.05 0.57 27 2015-07-28T08:11:38 GCA_053203845.1 798717 41 6710_7#5 SMRU1373-sc-2011-01-27-1061586 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025428 1313 GCF_001144765.1 Generic.1.0 86.05 SRA GCF_001144765.1 category_na live 2018-03-09T12:09:52Z SMRU1373 PRJEB2395 GCF_001144765.1-RS_2025_12_27 SC SC 27 2018-03-09T12:09:52Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQVK01 2009-03-24 SMRU1373 2011-11-15T09:28:16Z Prokka current 27 SMRU1373-sc-2011-01-27-1061586 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQVK01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1373 species_match 98.87 SAMEA1025428 5 Streptococcus pneumoniae 93.71 Streptococcus pneumoniae 1313 PRJEB2395 5 current na Best-placed reference protein set; GeneMarkS-2+ 135634 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-27 35C 35C species Homo sapiens 1892 Streptococcus pneumoniae Streptococcus pneumoniae ERS020883 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-03-24 v1.2.4 2012-01-20T19:57:35.326 99.31 2014971 93.71 1313 2091 2024-02-06T09:04:13.000 2014971 135634 2014962 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 155 EBI 100 GCA_053203845.1 GCF_001144765.1-RS_2025_12_27 SLX Streptococcus pneumoniae GCF_001144765.1 type nasopharynx 98.87 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CQVK00000000.1 2011-11-15T09:28:16Z GCF_001144765.1 haploid public SMRU1373-sc-2011-01-27-1061586 86.05 0.57 27 2015-07-28T08:11:38 GCA_053203845.1 798717 44 6710_7#5 SMRU1373-sc-2011-01-27-1061586 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025428 1313 GCA_001144765.1 Generic.1.0 86.05 SRA GCA_001144765.1 category_na live 2018-03-09T12:09:52Z SMRU1373 PRJEB2395 Annotation submitted by SC SC SC 27 2018-03-09T12:09:52Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQVK01 2009-03-24 SMRU1373 6.10 2011-11-15T09:28:16Z Prokka current 27 SMRU1373-sc-2011-01-27-1061586 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQVK01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1373 species_match 98.87 SAMEA2382671 5 Streptococcus pneumoniae 92.72 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 150275 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2009 Streptococcus pneumoniae Streptococcus pneumoniae ERS408996 SC 2006/2012 v1.2.4 2014-07-03T08:07:06.416 98.94 2038452 92.72 1313 2055 2024-02-06T06:44:39.000 2040285 95044 2038451 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900027255.1 type blood 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FDCH00000000.1 2014-07-02T15:07:58Z GCA_900027255.1 haploid public 992020_II-sc-1869917 86.13 0.31 32 2015-08-10T19:42:14 GCA_053203845.1 808475 46 12673_7#31 992020_II-sc-1869917 Netherlands 12673_7#31 SAMEA2382671 1313 GCF_900027255.1 Generic.1.0 86.13 SRA GCF_900027255.1 category_na live 2018-03-09T10:41:08Z 2842STDY5753212 PRJEB4909 GCF_900027255.1-RS_2026_01_11 SC SC 25 1869917 2018-03-09T10:41:08Z 2014-07-02T00:00:00.000 992020_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDCH01 2006/2012 2842STDY5753212 2014-07-02T15:07:58Z Prokka current 25 992020_II-sc-1869917 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDCH01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753212 species_match 98.81 SAMEA2382671 5 Streptococcus pneumoniae 92.72 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 150275 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1921 Streptococcus pneumoniae Streptococcus pneumoniae ERS408996 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-03T08:07:06.416 98.94 2038452 92.72 1313 2134 2024-02-06T06:44:39.000 2040285 95044 2038451 blood Homo sapiens Streptococcus pneumoniae Disease 162 EBI 100 GCA_053203845.1 GCF_900027255.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900027255.1 type blood 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FDCH00000000.1 2014-07-02T15:07:58Z GCF_900027255.1 haploid public 992020_II-sc-1869917 86.13 0.31 32 2015-08-10T19:42:14 GCA_053203845.1 808475 51 12673_7#31 992020_II-sc-1869917 Netherlands 12673_7#31 SAMEA2382671 1313 GCA_900027255.1 Generic.1.0 86.13 SRA GCA_900027255.1 category_na live 2018-03-09T10:41:08Z 2842STDY5753212 PRJEB4909 Annotation submitted by SC SC SC 25 1869917 2018-03-09T10:41:08Z 2014-07-02T00:00:00.000 992020_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDCH01 2006/2012 2842STDY5753212 6.10 2014-07-02T15:07:58Z Prokka current 25 992020_II-sc-1869917 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDCH01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753212 species_match 98.81 SAMEA1028900 8 Streptococcus pneumoniae 93.12 Streptococcus pneumoniae 1313 PRJEB2479 9 current na 84827 type Streptococcus pneumoniae 2015-07-27 35C 35C species Homo sapiens 2043 Streptococcus pneumoniae Streptococcus pneumoniae ERS022003 SC 2010-03-05 v1.2.4 2012-01-20T20:10:27.696 99.31 2051872 93.12 1313 2083 2024-02-05T16:29:57.000 2051908 84827 2051851 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001346235.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CHVL00000000.1 2012-01-05T09:56:38Z GCA_001346235.1 haploid public SMRU2493-sc-2011-01-27-1062706 90.51 0.78 50 2015-07-28T08:12:35 GCA_001457635.1 813836 40 6949_4#21 SMRU2493-sc-2011-01-27-1062706 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028900 1313 GCF_001346235.1 Generic.1.0 90.51 SRA GCF_001346235.1 category_na live 2018-03-09T09:53:04Z SMRU2493 PRJEB2479 GCF_001346235.1-RS_2026_01_19 SC SC 47 2018-03-09T09:53:04Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHVL01 2010-03-05 SMRU2493 2012-01-05T09:56:38Z Prokka current 47 SMRU2493-sc-2011-01-27-1062706 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHVL01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU2493 species_match 98.71 SAMEA1028900 8 Streptococcus pneumoniae 93.12 Streptococcus pneumoniae 1313 PRJEB2479 9 current na Best-placed reference protein set; GeneMarkS-2+ 84827 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 35C 35C species Homo sapiens 1960 Streptococcus pneumoniae Streptococcus pneumoniae ERS022003 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-03-05 v1.2.4 2012-01-20T20:10:27.696 99.31 2051872 93.12 1313 2170 2024-02-05T16:29:57.000 2051908 84827 2051851 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 166 EBI 100 GCA_001457635.1 GCF_001346235.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001346235.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CHVL00000000.1 2012-01-05T09:56:38Z GCF_001346235.1 haploid public SMRU2493-sc-2011-01-27-1062706 90.51 0.78 50 2015-07-28T08:12:35 GCA_001457635.1 813836 44 6949_4#21 SMRU2493-sc-2011-01-27-1062706 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028900 1313 GCA_001346235.1 Generic.1.0 90.51 SRA GCA_001346235.1 category_na live 2018-03-09T09:53:04Z SMRU2493 PRJEB2479 Annotation submitted by SC SC SC 47 2018-03-09T09:53:04Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHVL01 2010-03-05 SMRU2493 6.10 2012-01-05T09:56:38Z Prokka current 47 SMRU2493-sc-2011-01-27-1062706 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHVL01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU2493 species_match 98.71 SAMEA1025572 10 Streptococcus pneumoniae 91.49 Streptococcus pneumoniae 1313 PRJEB2395 10 current na 77266 type Streptococcus pneumoniae 2015-07-18 35C 35C species Homo sapiens 2071 Streptococcus pneumoniae Streptococcus pneumoniae ERS020937 SC 2009-04-08 v1.2.4 2012-01-20T19:58:11.526 99.1 2086569 91.49 1313 2110 2024-02-05T16:23:49.000 2086569 77266 2086559 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001200535.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CRRV00000000.1 2011-11-29T12:03:49Z GCA_001200535.1 haploid public SMRU1427-sc-2011-01-27-1061640 90.43 1.77 50 2015-07-28T08:11:51 GCA_001457635.1 827098 39 6805_2#11 SMRU1427-sc-2011-01-27-1061640 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025572 1313 GCF_001200535.1 Generic.1.0 90.43 SRA GCF_001200535.1 category_na live 2018-03-09T09:53:01Z SMRU1427 PRJEB2395 GCF_001200535.1-RS_2026_01_06 SC SC 50 2018-03-09T09:53:01Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRRV01 2009-04-08 SMRU1427 2011-11-29T12:03:49Z Prokka current 50 SMRU1427-sc-2011-01-27-1061640 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRRV01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1427 species_match 98.7 SAMEA1025572 10 Streptococcus pneumoniae 91.49 Streptococcus pneumoniae 1313 PRJEB2395 10 current na Best-placed reference protein set; GeneMarkS-2+ 77266 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-06 35C 35C species Homo sapiens 1997 Streptococcus pneumoniae Streptococcus pneumoniae ERS020937 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-08 v1.2.4 2012-01-20T19:58:11.526 99.1 2086569 91.49 1313 2185 2024-02-05T16:23:49.000 2086569 77266 2086559 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 145 EBI 100 GCA_001457635.1 GCF_001200535.1-RS_2026_01_06 SLX Streptococcus pneumoniae GCF_001200535.1 type nasopharynx 98.7 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CRRV00000000.1 2011-11-29T12:03:49Z GCF_001200535.1 haploid public SMRU1427-sc-2011-01-27-1061640 90.43 1.77 50 2015-07-28T08:11:51 GCA_001457635.1 827098 43 6805_2#11 SMRU1427-sc-2011-01-27-1061640 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025572 1313 GCA_001200535.1 Generic.1.0 90.43 SRA GCA_001200535.1 category_na live 2018-03-09T09:53:01Z SMRU1427 PRJEB2395 Annotation submitted by SC SC SC 50 2018-03-09T09:53:01Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRRV01 2009-04-08 SMRU1427 6.10 2011-11-29T12:03:49Z Prokka current 50 SMRU1427-sc-2011-01-27-1061640 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRRV01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1427 species_match 98.7 SAMEA1024611 10 Streptococcus pneumoniae 93.6 Streptococcus pneumoniae 1313 PRJEB2393 10 current na 73912 type Streptococcus pneumoniae 2015-07-17 35C 35C species Homo sapiens 2020 Streptococcus pneumoniae Streptococcus pneumoniae ERS020522 SC 2008-11-28 v1.2.4 2012-01-20T19:53:35.520 99.31 2037678 93.6 1313 2060 2024-02-06T09:04:14.000 2037678 73912 2037678 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001170825.1 type nasopharynx 98.86 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRRR00000000.1 2011-11-29T12:03:49Z GCA_001170825.1 haploid public SMRU1012-sc-2011-01-27-1061225 86.91 0.52 52 2015-07-28T08:11:49 GCA_053203845.1 809186 40 6805_1#4 SMRU1012-sc-2011-01-27-1061225 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024611 1313 GCF_001170825.1 Generic.1.0 86.91 SRA GCF_001170825.1 category_na live 2018-03-09T12:10:17Z SMRU1012 PRJEB2393 GCF_001170825.1-RS_2026_01_04 SC SC 52 2018-03-09T12:10:17Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRRR01 2008-11-28 SMRU1012 2011-11-29T12:03:49Z Prokka current 52 SMRU1012-sc-2011-01-27-1061225 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRRR01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1012 species_match 98.86 SAMEA1024611 10 Streptococcus pneumoniae 93.6 Streptococcus pneumoniae 1313 PRJEB2393 10 current na Best-placed reference protein set; GeneMarkS-2+ 73912 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-04 35C 35C species Homo sapiens 1947 Streptococcus pneumoniae Streptococcus pneumoniae ERS020522 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-11-28 v1.2.4 2012-01-20T19:53:35.520 99.31 2037678 93.6 1313 2134 2024-02-06T09:04:14.000 2037678 73912 2037678 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 144 EBI 100 GCA_053203845.1 GCF_001170825.1-RS_2026_01_04 SLX Streptococcus pneumoniae GCF_001170825.1 type nasopharynx 98.86 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRRR00000000.1 2011-11-29T12:03:49Z GCF_001170825.1 haploid public SMRU1012-sc-2011-01-27-1061225 86.91 0.52 52 2015-07-28T08:11:49 GCA_053203845.1 809186 43 6805_1#4 SMRU1012-sc-2011-01-27-1061225 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024611 1313 GCA_001170825.1 Generic.1.0 86.91 SRA GCA_001170825.1 category_na live 2018-03-09T12:10:17Z SMRU1012 PRJEB2393 Annotation submitted by SC SC SC 52 2018-03-09T12:10:17Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRRR01 2008-11-28 SMRU1012 6.10 2011-11-29T12:03:49Z Prokka current 52 SMRU1012-sc-2011-01-27-1061225 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRRR01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1012 species_match 98.86 SAMEA1028604 11 Streptococcus pneumoniae 92.28 Streptococcus pneumoniae 1313 PRJEB2479 11 current na 72352 type Streptococcus pneumoniae 2015-07-14 35C 35C species Homo sapiens 2032 Streptococcus pneumoniae Streptococcus pneumoniae ERS021901 SC 2010-02-03 v1.2.4 2012-01-20T20:09:37.273 99.31 2063583 92.28 1313 2072 2024-02-06T09:02:42.000 2063583 72352 2063577 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001151905.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLZQ00000000.1 2012-01-10T09:59:59Z GCA_001151905.1 haploid public SMRU2392-sc-2011-01-27-1062605 90.21 1.77 60 2015-07-28T08:12:49 GCA_001457635.1 818039 40 6983_8#88 SMRU2392-sc-2011-01-27-1062605 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028604 1313 GCF_001151905.1 Generic.1.0 90.21 SRA GCF_001151905.1 category_na live 2018-03-09T11:47:18Z SMRU2392 PRJEB2479 GCF_001151905.1-RS_2026_01_05 SC SC 60 2018-03-09T11:47:18Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLZQ01 2010-02-03 SMRU2392 2012-01-10T09:59:59Z Prokka current 60 SMRU2392-sc-2011-01-27-1062605 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLZQ01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2392 species_match 98.71 SAMEA1028604 11 Streptococcus pneumoniae 92.28 Streptococcus pneumoniae 1313 PRJEB2479 11 current na Best-placed reference protein set; GeneMarkS-2+ 72352 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-05 35C 35C species Homo sapiens 1969 Streptococcus pneumoniae Streptococcus pneumoniae ERS021901 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-02-03 v1.2.4 2012-01-20T20:09:37.273 99.31 2063583 92.28 1313 2158 2024-02-06T09:02:42.000 2063583 72352 2063577 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 145 EBI 100 GCA_001457635.1 GCF_001151905.1-RS_2026_01_05 SLX Streptococcus pneumoniae GCF_001151905.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLZQ00000000.1 2012-01-10T09:59:59Z GCF_001151905.1 haploid public SMRU2392-sc-2011-01-27-1062605 90.21 1.77 60 2015-07-28T08:12:49 GCA_001457635.1 818039 44 6983_8#88 SMRU2392-sc-2011-01-27-1062605 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028604 1313 GCA_001151905.1 Generic.1.0 90.21 SRA GCA_001151905.1 category_na live 2018-03-09T11:47:18Z SMRU2392 PRJEB2479 Annotation submitted by SC SC SC 60 2018-03-09T11:47:18Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLZQ01 2010-02-03 SMRU2392 6.10 2012-01-10T09:59:59Z Prokka current 60 SMRU2392-sc-2011-01-27-1062605 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLZQ01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2392 species_match 98.71 SAMEA1025789 10 Streptococcus pneumoniae 93.75 Streptococcus pneumoniae 1313 PRJEB2397 10 current na 64620 type Streptococcus pneumoniae 2015-07-27 35C 35C species Homo sapiens 2015 Streptococcus pneumoniae Streptococcus pneumoniae ERS021732 SC 2009-12-12 v1.2.4 2012-01-20T20:07:40.356 99.31 2035287 93.75 1313 2056 2024-02-05T16:12:18.000 2035287 64620 2035278 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001343395.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CIIA00000000.1 2012-01-10T09:59:57Z GCA_001343395.1 haploid public SMRU2223-sc-2011-01-27-1062436 90.39 0.52 54 2015-07-28T08:12:41 GCA_001457635.1 807618 41 6983_2#15 SMRU2223-sc-2011-01-27-1062436 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025789 1313 GCF_001343395.1 Generic.1.0 90.39 SRA GCF_001343395.1 category_na live 2018-03-09T09:52:52Z SMRU2223 PRJEB2397 GCF_001343395.1-RS_2026_01_06 SC SC 54 2018-03-09T09:52:52Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIIA01 2009-12-12 SMRU2223 2012-01-10T09:59:57Z Prokka current 54 SMRU2223-sc-2011-01-27-1062436 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CIIA01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU2223 species_match 98.71 SAMEA1025789 10 Streptococcus pneumoniae 93.75 Streptococcus pneumoniae 1313 PRJEB2397 10 current na Best-placed reference protein set; GeneMarkS-2+ 64620 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-06 35C 35C species Homo sapiens 1952 Streptococcus pneumoniae Streptococcus pneumoniae ERS021732 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-12-12 v1.2.4 2012-01-20T20:07:40.356 99.31 2035287 93.75 1313 2145 2024-02-05T16:12:18.000 2035287 64620 2035278 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 149 EBI 100 GCA_001457635.1 GCF_001343395.1-RS_2026_01_06 SLX Streptococcus pneumoniae GCF_001343395.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CIIA00000000.1 2012-01-10T09:59:57Z GCF_001343395.1 haploid public SMRU2223-sc-2011-01-27-1062436 90.39 0.52 54 2015-07-28T08:12:41 GCA_001457635.1 807618 44 6983_2#15 SMRU2223-sc-2011-01-27-1062436 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025789 1313 GCA_001343395.1 Generic.1.0 90.39 SRA GCA_001343395.1 category_na live 2018-03-09T09:52:52Z SMRU2223 PRJEB2397 Annotation submitted by SC SC SC 54 2018-03-09T09:52:52Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIIA01 2009-12-12 SMRU2223 6.10 2012-01-10T09:59:57Z Prokka current 54 SMRU2223-sc-2011-01-27-1062436 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CIIA01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU2223 species_match 98.71 SAMEA1025067 12 Streptococcus pneumoniae 94.05 Streptococcus pneumoniae 1313 PRJEB2393 12 current na 62776 type Streptococcus pneumoniae 2015-07-28 35C 35C species Homo sapiens 1945 Streptococcus pneumoniae Streptococcus pneumoniae ERS020293 SC 2008-10-02 v1.2.4 2012-01-20T19:51:02.136 99.31 1995339 94.05 1313 1988 2024-02-05T16:15:03.000 1995339 62776 1995325 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001339975.1 type nasopharynx 98.9 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CHTQ00000000.1 2011-11-15T09:28:17Z GCA_001339975.1 haploid public SMRU783-sc-2011-01-27-1060972 85.52 0.52 57 2015-07-28T08:11:23 GCA_053203845.1 791500 43 6755_1#15 SMRU783-sc-2011-01-27-1060972 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025067 1313 GCF_001339975.1 Generic.1.0 85.52 SRA GCF_001339975.1 category_na live 2018-03-09T09:52:54Z SMRU783 PRJEB2393 GCF_001339975.1-RS_2026_02_01 SC SC 57 2018-03-09T09:52:54Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHTQ01 2008-10-02 SMRU783 2011-11-15T09:28:17Z Prokka current 57 SMRU783-sc-2011-01-27-1060972 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHTQ01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU783 species_match 98.9 SAMEA1025067 12 Streptococcus pneumoniae 94.05 Streptococcus pneumoniae 1313 PRJEB2393 12 current na Best-placed reference protein set; GeneMarkS-2+ 62776 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 35C 35C species Homo sapiens 1886 Streptococcus pneumoniae Streptococcus pneumoniae ERS020293 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-10-02 v1.2.4 2012-01-20T19:51:02.136 99.31 1995339 94.05 1313 2074 2024-02-05T16:15:03.000 1995339 62776 1995325 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 143 EBI 100 GCA_053203845.1 GCF_001339975.1-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_001339975.1 type nasopharynx 98.9 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CHTQ00000000.1 2011-11-15T09:28:17Z GCF_001339975.1 haploid public SMRU783-sc-2011-01-27-1060972 85.52 0.52 57 2015-07-28T08:11:23 GCA_053203845.1 791500 45 6755_1#15 SMRU783-sc-2011-01-27-1060972 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025067 1313 GCA_001339975.1 Generic.1.0 85.52 SRA GCA_001339975.1 category_na live 2018-03-09T09:52:54Z SMRU783 PRJEB2393 Annotation submitted by SC SC SC 57 2018-03-09T09:52:54Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHTQ01 2008-10-02 SMRU783 6.10 2011-11-15T09:28:17Z Prokka current 57 SMRU783-sc-2011-01-27-1060972 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHTQ01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU783 species_match 98.9 SAMEA1026238 13 Streptococcus pneumoniae 93.58 Streptococcus pneumoniae 1313 PRJEB2397 13 current na 58623 type Streptococcus pneumoniae 2015-07-13 35C 35C species Homo sapiens 2006 Streptococcus pneumoniae Streptococcus pneumoniae ERS021807 SC 2010-01-06 v1.2.4 2012-01-20T20:08:18.630 99.31 2035162 93.58 1313 2046 2024-02-06T09:02:39.000 2035162 58623 2035145 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001128945.1 type nasopharynx 98.86 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLWL00000000.1 2012-01-10T09:59:58Z GCA_001128945.1 haploid public SMRU2298-sc-2011-01-27-1062511 86.79 0.52 72 2015-07-28T08:12:44 GCA_053203845.1 807712 40 6983_4#90 SMRU2298-sc-2011-01-27-1062511 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026238 1313 GCF_001128945.1 Generic.1.0 86.79 SRA GCF_001128945.1 category_na live 2018-03-09T11:46:31Z SMRU2298 PRJEB2397 GCF_001128945.1-RS_2025_08_18 SC SC 72 2018-03-09T11:46:31Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLWL01 2010-01-06 SMRU2298 2012-01-10T09:59:58Z Prokka current 72 SMRU2298-sc-2011-01-27-1062511 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLWL01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2298 species_match 98.86 SAMEA1026238 13 Streptococcus pneumoniae 93.58 Streptococcus pneumoniae 1313 PRJEB2397 13 current na Best-placed reference protein set; GeneMarkS-2+ 58623 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-18 35C 35C species Homo sapiens 1939 Streptococcus pneumoniae Streptococcus pneumoniae ERS021807 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-01-06 v1.2.4 2012-01-20T20:08:18.630 99.31 2035162 93.58 1313 2139 2024-02-06T09:02:39.000 2035162 58623 2035145 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 156 EBI 100 GCA_053203845.1 GCF_001128945.1-RS_2025_08_18 SLX Streptococcus pneumoniae GCF_001128945.1 type nasopharynx 98.86 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLWL00000000.1 2012-01-10T09:59:58Z GCF_001128945.1 haploid public SMRU2298-sc-2011-01-27-1062511 86.79 0.52 72 2015-07-28T08:12:44 GCA_053203845.1 807712 44 6983_4#90 SMRU2298-sc-2011-01-27-1062511 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026238 1313 GCA_001128945.1 Generic.1.0 86.79 SRA GCA_001128945.1 category_na live 2018-03-09T11:46:31Z SMRU2298 PRJEB2397 Annotation submitted by SC SC SC 72 2018-03-09T11:46:31Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLWL01 2010-01-06 SMRU2298 6.10 2012-01-10T09:59:58Z Prokka current 72 SMRU2298-sc-2011-01-27-1062511 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLWL01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2298 species_match 98.86 SAMEA2467562 8 Streptococcus pneumoniae 92.82 Streptococcus pneumoniae 1313 PRJEB3084 9 current na 94649 type Streptococcus pneumoniae 2019-05-12 35B 35B species Homo sapiens 2004 Streptococcus pneumoniae Streptococcus pneumoniae ERS437319 SC 2009 v1.2.4 2014-08-28T08:07:09.400 99.62 2041862 92.82 1313 2049 Streptococcus pneumoniae 2024-02-06T15:55:00.000 2042556 90886 2041862 blood Homo sapiens Streptococcus pneumoniae IPD ST558 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900061215.2 type blood 98.65 ERC000011 OK 39.5 Streptococcus pneumoniae 99.2446 https://www.ncbi.nlm.nih.gov/nuccore/FHMP00000000.2 2014-08-27T09:43:49Z GCA_900061215.2 haploid public 2009218297-sc-1926348 86.37 0.62 33 2015-08-07T22:30:10.910 GCA_053203845.1 810434 45 13154_3#20 2009218297-sc-1926348 USA 13154_3#20 SAMEA2467562 1313 GCF_900061215.2 Generic.1.0 86.37 SRA GCF_900061215.2 category_na live 2019-04-18T15:39:22Z GPSC59 PRJEB3084 GCF_900061215.2-RS_2025_12_29 SC SC 28 1926348 2019-04-18T15:39:22Z 2014-08-27T00:00:00.000 2009218297 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHMP02 2009 2245STDY5804463 2014-08-27T09:43:49Z Prokka current 28 2009218297-sc-1926348 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHMP02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC59 species_match 98.65 SAMEA2467562 8 Streptococcus pneumoniae 92.82 Streptococcus pneumoniae 1313 PRJEB3084 9 current na Best-placed reference protein set; GeneMarkS-2+ 94649 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-29 35B 35B species Homo sapiens 1903 Streptococcus pneumoniae Streptococcus pneumoniae ERS437319 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-08-28T08:07:09.400 99.62 2041862 92.82 1313 2118 Streptococcus pneumoniae 2024-02-06T15:55:00.000 2042556 90886 2041862 blood Homo sapiens Streptococcus pneumoniae IPD 164 ST558 EBI 100 GCA_053203845.1 GCF_900061215.2-RS_2025_12_29 SLX Streptococcus pneumoniae GCF_900061215.2 type blood 98.65 ERC000011 OK 39.5 Streptococcus pneumoniae 99.2446 https://www.ncbi.nlm.nih.gov/nuccore/FHMP00000000.2 2014-08-27T09:43:49Z GCF_900061215.2 haploid public 2009218297-sc-1926348 86.37 0.62 33 2015-08-07T22:30:10.910 GCA_053203845.1 810434 51 13154_3#20 2009218297-sc-1926348 USA 13154_3#20 SAMEA2467562 1313 GCA_900061215.2 Generic.1.0 86.37 SRA GCA_900061215.2 category_na live 2019-04-18T15:39:22Z GPSC59 PRJEB3084 Annotation submitted by SC SC SC 28 1926348 2019-04-18T15:39:22Z 2014-08-27T00:00:00.000 2009218297 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHMP02 2009 GPSC59 substr. ST558 6.10 2014-08-27T09:43:49Z Prokka current 28 2009218297-sc-1926348 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHMP02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC59 species_match 98.65 SAMEA1032515 10 Streptococcus pneumoniae 93.95 Streptococcus pneumoniae 1313 PRJEB2632 10 current na 80308 type Streptococcus pneumoniae 2015-07-29 35B 35B species Homo sapiens 1928 Streptococcus pneumoniae Streptococcus pneumoniae ERS044039 SC 2001 v1.2.3 2012-01-23T19:53:44.946 99.56 2006161 93.95 1313 1959 2024-02-06T09:02:20.000 2006161 80308 2006161 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001125545.2 type nasopharynx 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 97.3817 https://www.ncbi.nlm.nih.gov/nuccore/CNSZ00000000.2 2012-01-19T13:56:14Z GCA_001125545.2 haploid public 007649-sc-2011-08-01T09:44:59Z-1250104 85.89 0.62 102 2015-09-10T08:19:57 GCA_053203845.1 796272 31 6999_3#5 007649-sc-2011-08-01T09:44:59Z-1250104 USA: Massachesetts Streptococcus pneumoniae SAMEA1032515 1313 GCF_001125545.1 Generic.1.0 85.89 SRA GCF_001125545.1 category_na live 2018-03-09T11:42:58Z 7649 PRJEB2632 GCF_001125545.1-RS_2025_03_31 SC SC 102 2018-03-09T11:42:58Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNSZ02 2001 7649 2012-01-19T13:56:14Z Velvet current 102 007649-sc-2011-08-01T09:44:59Z-1250104 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNSZ02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 007649 species_match 98.7 SAMEA1032515 10 Streptococcus pneumoniae 93.95 Streptococcus pneumoniae 1313 PRJEB2632 10 current na Best-placed reference protein set; GeneMarkS-2+ 80308 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-03-31 35B 35B species Homo sapiens 1868 Streptococcus pneumoniae Streptococcus pneumoniae ERS044039 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2001 v1.2.3 2012-01-23T19:53:44.946 99.56 2006161 93.95 1313 2078 2024-02-06T09:02:20.000 2006161 80308 2006161 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 159 EBI 100 GCA_053203845.1 GCF_001125545.1-RS_2025_03_31 SLX Streptococcus pneumoniae GCF_001125545.1 type nasopharynx 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 97.3817 https://www.ncbi.nlm.nih.gov/nuccore/CNSZ00000000.2 2012-01-19T13:56:14Z GCF_001125545.1 haploid public 007649-sc-2011-08-01T09:44:59Z-1250104 85.89 0.62 102 2015-09-10T08:19:57 GCA_053203845.1 796272 51 6999_3#5 007649-sc-2011-08-01T09:44:59Z-1250104 USA: Massachesetts Streptococcus pneumoniae SAMEA1032515 1313 GCA_001125545.2 Generic.1.0 85.89 SRA GCA_001125545.2 category_na live 2018-03-09T11:42:58Z 7649 PRJEB2632 Annotation submitted by SC SC SC 102 2018-03-09T11:42:58Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNSZ02 2001 7649 6.10 2012-01-19T13:56:14Z Velvet current 102 007649-sc-2011-08-01T09:44:59Z-1250104 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNSZ02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 007649 species_match 98.7 SAMEA1032644 11 Streptococcus pneumoniae 94.12 Streptococcus pneumoniae 1313 PRJEB2632 11 current na 68288 type Streptococcus pneumoniae 2015-07-29 35B 35B species Homo sapiens 1922 Streptococcus pneumoniae Streptococcus pneumoniae ERS043864 SC 2004 v1.2.3 2012-01-20T21:35:35.726 99.62 2002510 94.12 1313 1953 2024-02-05T17:29:47.000 2002510 68288 2002510 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001119045.2 type nasopharynx 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 99.2446 https://www.ncbi.nlm.nih.gov/nuccore/CNNL00000000.2 2012-01-05T09:57:46Z GCA_001119045.2 haploid public 3044-sc-2011-08-01T09:42:53Z-1249929 85.89 0.62 120 2015-09-10T08:19:37 GCA_053203845.1 794985 31 6925_1#62 3044-sc-2011-08-01T09:42:53Z-1249929 USA: Massachesetts Streptococcus pneumoniae SAMEA1032644 1313 GCF_001119045.1 Generic.1.0 85.89 SRA GCF_001119045.1 category_na live 2018-03-09T09:53:49Z R34-3044 PRJEB2632 GCF_001119045.1-RS_2025_03_31 SC SC 120 2018-03-09T09:53:49Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNNL02 2004 R34-3044 2012-01-05T09:57:46Z Velvet current 120 3044-sc-2011-08-01T09:42:53Z-1249929 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNNL02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 3044 species_match 98.7 SAMEA1032644 11 Streptococcus pneumoniae 94.12 Streptococcus pneumoniae 1313 PRJEB2632 11 current na Best-placed reference protein set; GeneMarkS-2+ 68288 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-03-31 35B 35B species Homo sapiens 1855 Streptococcus pneumoniae Streptococcus pneumoniae ERS043864 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2004 v1.2.3 2012-01-20T21:35:35.726 99.62 2002510 94.12 1313 2072 2024-02-05T17:29:47.000 2002510 68288 2002510 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 166 EBI 100 GCA_053203845.1 GCF_001119045.1-RS_2025_03_31 SLX Streptococcus pneumoniae GCF_001119045.1 type nasopharynx 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 99.2446 https://www.ncbi.nlm.nih.gov/nuccore/CNNL00000000.2 2012-01-05T09:57:46Z GCF_001119045.1 haploid public 3044-sc-2011-08-01T09:42:53Z-1249929 85.89 0.62 120 2015-09-10T08:19:37 GCA_053203845.1 794985 51 6925_1#62 3044-sc-2011-08-01T09:42:53Z-1249929 USA: Massachesetts Streptococcus pneumoniae SAMEA1032644 1313 GCA_001119045.2 Generic.1.0 85.89 SRA GCA_001119045.2 category_na live 2018-03-09T09:53:49Z R34-3044 PRJEB2632 Annotation submitted by SC SC SC 120 2018-03-09T09:53:49Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNNL02 2004 R34-3044 6.10 2012-01-05T09:57:46Z Velvet current 120 3044-sc-2011-08-01T09:42:53Z-1249929 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNNL02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 3044 species_match 98.7 SAMEA974648 9 Streptococcus pneumoniae 86.0 Streptococcus pneumoniae 1313 PRJEB2357 9 current na 61582 type Streptococcus pneumoniae 2015-07-11 35F 35F species Homo sapiens 2166 Streptococcus pneumoniae Streptococcus pneumoniae ERS019181 SC 2007-12-21 v1.2.4 2011-07-31T19:54:54.933 99.29 2189864 86.0 1313 2203 2024-02-06T09:04:00.000 2189895 61582 2189850 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001154405.1 type nasopharynx 98.82 OK 39.5 Streptococcus pneumoniae 78.8426 https://www.ncbi.nlm.nih.gov/nuccore/CJZT00000000.1 2011-07-27T10:09:44Z GCA_001154405.1 haploid public SMRU23-sc-2011-01-27-1026448 85.82 4.06 68 2016-01-29T08:05:14 GCA_053203845.1 864354 37 6259_5#23 SMRU23-sc-2011-01-27-1026448 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974648 1313 GCF_001154405.1 Generic.1.0 85.82 SRA GCF_001154405.1 category_na live 2018-03-09T12:05:43Z SMRU23 PRJEB2357 GCF_001154405.1-RS_2026_02_04 SC SC 66 2018-03-09T12:05:43Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CJZT01 2007-12-21 35F 2011-07-27T10:09:44Z Prokka current 66 SMRU23-sc-2011-01-27-1026448 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CJZT01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU23 species_match 98.82 SAMEA974648 9 Streptococcus pneumoniae 86.0 Streptococcus pneumoniae 1313 PRJEB2357 9 current na Best-placed reference protein set; GeneMarkS-2+ 61582 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-04 35F 35F species Homo sapiens 2071 Streptococcus pneumoniae Streptococcus pneumoniae ERS019181 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007-12-21 v1.2.4 2011-07-31T19:54:54.933 99.29 2189864 86.0 1313 2270 2024-02-06T09:04:00.000 2189895 61582 2189850 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 160 EBI 100 GCA_053203845.1 GCF_001154405.1-RS_2026_02_04 SLX Streptococcus pneumoniae GCF_001154405.1 type nasopharynx 98.82 OK 39.5 Streptococcus pneumoniae 78.8426 https://www.ncbi.nlm.nih.gov/nuccore/CJZT00000000.1 2011-07-27T10:09:44Z GCF_001154405.1 haploid public SMRU23-sc-2011-01-27-1026448 85.82 4.06 68 2016-01-29T08:05:14 GCA_053203845.1 864354 39 6259_5#23 SMRU23-sc-2011-01-27-1026448 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974648 1313 GCA_001154405.1 Generic.1.0 85.82 SRA GCA_001154405.1 category_na live 2018-03-09T12:05:43Z SMRU23 PRJEB2357 Annotation submitted by SC SC SC 66 2018-03-09T12:05:43Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CJZT01 2007-12-21 SMRU23 6.10 2011-07-27T10:09:44Z Prokka current 66 SMRU23-sc-2011-01-27-1026448 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CJZT01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU23 species_match 98.82 SAMEA1463124 12 Streptococcus pneumoniae 93.63 Streptococcus pneumoniae 1313 PRJEB2632 12 current na 56186 type Streptococcus pneumoniae 2015-07-29 35B 35B species Homo sapiens 1904 Streptococcus pneumoniae Streptococcus pneumoniae ERS070064 SC 2007 v1.2.4 2012-06-06T09:06:38.353 98.97 1987336 93.63 1313 1933 2024-02-05T18:13:47.000 AFVC5 1987336 56186 1987336 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001133485.2 type nasopharynx 98.61 ERC000011 OK 40.0 Streptococcus pneumoniae 45.4964 https://www.ncbi.nlm.nih.gov/nuccore/COEP00000000.2 2012-05-28T10:19:34Z GCA_001133485.2 haploid public MD5042-sc-2011-11-08T10:08:10Z-1298432 84.8 0.62 138 2015-09-10T08:20:51 AFVC5 GCA_053203845.1 790442 29 7622_5#53 MD5042-sc-2011-11-08T10:08:10Z-1298432 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463124 1313 GCF_001133485.1 Generic.1.0 84.8 SRA GCF_001133485.1 category_na live 2018-03-09T09:54:39Z MD5042 PRJEB2632 GCF_001133485.1-RS_2025_09_15 SC SC 138 AFVC5 2018-03-09T09:54:39Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COEP02 2007 MD5042 2012-05-28T10:19:34Z Velvet current 138 MD5042-sc-2011-11-08T10:08:10Z-1298432 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COEP02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 MD5042 species_match 98.61 SAMEA1463124 12 Streptococcus pneumoniae 93.63 Streptococcus pneumoniae 1313 PRJEB2632 12 current na Best-placed reference protein set; GeneMarkS-2+ 56186 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-15 35B 35B species Homo sapiens 1845 Streptococcus pneumoniae Streptococcus pneumoniae ERS070064 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:38.353 98.97 1987336 93.63 1313 2048 2024-02-05T18:13:47.000 AFVC5 1987336 56186 1987336 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 158 EBI 100 GCA_053203845.1 GCF_001133485.1-RS_2025_09_15 SLX Streptococcus pneumoniae GCF_001133485.1 type nasopharynx 98.61 ERC000011 OK 40.0 Streptococcus pneumoniae 45.4964 https://www.ncbi.nlm.nih.gov/nuccore/COEP00000000.2 2012-05-28T10:19:34Z GCF_001133485.1 haploid public MD5042-sc-2011-11-08T10:08:10Z-1298432 84.8 0.62 138 2015-09-10T08:20:51 AFVC5 GCA_053203845.1 790442 45 7622_5#53 MD5042-sc-2011-11-08T10:08:10Z-1298432 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463124 1313 GCA_001133485.2 Generic.1.0 84.8 SRA GCA_001133485.2 category_na live 2018-03-09T09:54:39Z MD5042 PRJEB2632 Annotation submitted by SC SC SC 138 AFVC5 2018-03-09T09:54:39Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COEP02 2007 MD5042 6.10 2012-05-28T10:19:34Z Velvet current 138 MD5042-sc-2011-11-08T10:08:10Z-1298432 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COEP02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 MD5042 species_match 98.61 SAMEA1032514 13 Streptococcus pneumoniae 94.15 Streptococcus pneumoniae 1313 PRJEB2632 13 current na 51654 type Streptococcus pneumoniae 2015-07-29 35B 35B species Homo sapiens 1922 Streptococcus pneumoniae Streptococcus pneumoniae ERS043968 SC 2004 v1.2.3 2012-01-20T21:37:33.776 99.62 2001670 94.15 1313 1951 2024-02-06T09:02:19.000 2001670 51654 2001670 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001156685.2 type nasopharynx 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 99.2446 https://www.ncbi.nlm.nih.gov/nuccore/CNQO00000000.2 2012-01-16T15:10:50Z GCA_001156685.2 haploid public 3164-sc-2011-08-01T09:44:10Z-1250033 85.89 0.62 143 2015-09-10T08:19:47 GCA_053203845.1 794537 29 6952_7#3 3164-sc-2011-08-01T09:44:10Z-1250033 USA: Massachesetts Streptococcus pneumoniae SAMEA1032514 1313 GCF_001156685.1 Generic.1.0 85.89 SRA GCF_001156685.1 category_na live 2018-03-09T11:42:36Z R34-3164 PRJEB2632 GCF_001156685.1-RS_2025_03_31 SC SC 143 2018-03-09T11:42:36Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNQO02 2004 R34-3164 2012-01-16T15:10:50Z Velvet current 143 3164-sc-2011-08-01T09:44:10Z-1250033 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNQO02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 3164 species_match 98.71 SAMEA1032514 13 Streptococcus pneumoniae 94.15 Streptococcus pneumoniae 1313 PRJEB2632 13 current na Best-placed reference protein set; GeneMarkS-2+ 51654 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-03-31 35B 35B species Homo sapiens 1847 Streptococcus pneumoniae Streptococcus pneumoniae ERS043968 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2004 v1.2.3 2012-01-20T21:37:33.776 99.62 2001670 94.15 1313 2059 2024-02-06T09:02:19.000 2001670 51654 2001670 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 166 EBI 100 GCA_053203845.1 GCF_001156685.1-RS_2025_03_31 SLX Streptococcus pneumoniae GCF_001156685.1 type nasopharynx 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 99.2446 https://www.ncbi.nlm.nih.gov/nuccore/CNQO00000000.2 2012-01-16T15:10:50Z GCF_001156685.1 haploid public 3164-sc-2011-08-01T09:44:10Z-1250033 85.89 0.62 143 2015-09-10T08:19:47 GCA_053203845.1 794537 46 6952_7#3 3164-sc-2011-08-01T09:44:10Z-1250033 USA: Massachesetts Streptococcus pneumoniae SAMEA1032514 1313 GCA_001156685.2 Generic.1.0 85.89 SRA GCA_001156685.2 category_na live 2018-03-09T11:42:36Z R34-3164 PRJEB2632 Annotation submitted by SC SC SC 143 2018-03-09T11:42:36Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNQO02 2004 R34-3164 6.10 2012-01-16T15:10:50Z Velvet current 143 3164-sc-2011-08-01T09:44:10Z-1250033 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNQO02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 3164 species_match 98.71 SAMEA1463008 12 Streptococcus pneumoniae 94.14 Streptococcus pneumoniae 1313 PRJEB2632 12 current na 49320 type Streptococcus pneumoniae 2015-07-29 35B 35B species Homo sapiens 1921 Streptococcus pneumoniae Streptococcus pneumoniae ERS070091 SC 2007 v1.2.4 2012-06-06T09:06:39.600 99.78 2003891 94.14 1313 1951 2024-02-06T09:02:32.000 0NWX9 2003891 49320 2003891 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001114885.2 type nasopharynx 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae 99.936 https://www.ncbi.nlm.nih.gov/nuccore/COFI00000000.2 2012-05-28T10:19:33Z GCA_001114885.2 haploid public ND6038-sc-2011-11-08T10:08:30Z-1298459 85.97 0.62 147 2015-09-10T08:20:51 0NWX9 GCA_053203845.1 795367 30 7622_5#80 ND6038-sc-2011-11-08T10:08:30Z-1298459 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463008 1313 GCF_001114885.1 Generic.1.0 85.97 SRA GCF_001114885.1 category_na live 2018-03-09T11:45:31Z ND6038 PRJEB2632 GCF_001114885.1-RS_2025_09_15 SC SC 147 0NWX9 2018-03-09T11:45:31Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COFI02 2007 ND6038 2012-05-28T10:19:33Z Velvet current 147 ND6038-sc-2011-11-08T10:08:30Z-1298459 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COFI02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 ND6038 species_match 98.72 SAMEA1463008 12 Streptococcus pneumoniae 94.14 Streptococcus pneumoniae 1313 PRJEB2632 12 current na Best-placed reference protein set; GeneMarkS-2+ 49320 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-15 35B 35B species Homo sapiens 1857 Streptococcus pneumoniae Streptococcus pneumoniae ERS070091 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:39.600 99.78 2003891 94.14 1313 2071 2024-02-06T09:02:32.000 0NWX9 2003891 49320 2003891 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 168 EBI 100 GCA_053203845.1 GCF_001114885.1-RS_2025_09_15 SLX Streptococcus pneumoniae GCF_001114885.1 type nasopharynx 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae 99.936 https://www.ncbi.nlm.nih.gov/nuccore/COFI00000000.2 2012-05-28T10:19:33Z GCF_001114885.1 haploid public ND6038-sc-2011-11-08T10:08:30Z-1298459 85.97 0.62 147 2015-09-10T08:20:51 0NWX9 GCA_053203845.1 795367 46 7622_5#80 ND6038-sc-2011-11-08T10:08:30Z-1298459 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463008 1313 GCA_001114885.2 Generic.1.0 85.97 SRA GCA_001114885.2 category_na live 2018-03-09T11:45:31Z ND6038 PRJEB2632 Annotation submitted by SC SC SC 147 0NWX9 2018-03-09T11:45:31Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COFI02 2007 ND6038 6.10 2012-05-28T10:19:33Z Velvet current 147 ND6038-sc-2011-11-08T10:08:30Z-1298459 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COFI02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 ND6038 species_match 98.72 SAMEA1463139 15 Streptococcus pneumoniae 94.07 Streptococcus pneumoniae 1313 PRJEB2632 15 current na 39914 type Streptococcus pneumoniae 2015-07-28 35B 35B species Homo sapiens 1911 Streptococcus pneumoniae Streptococcus pneumoniae ERS070168 SC 2007 v1.2.4 2012-05-15T12:05:34.020 99.62 1999633 94.07 1313 1937 2024-02-05T18:13:47.000 6893Z 1999633 39914 1999633 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001301615.2 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 99.2446 https://www.ncbi.nlm.nih.gov/nuccore/CFQY00000000.2 2012-05-09T10:03:15Z GCA_001301615.2 haploid public NP7122-sc-2011-11-08T10:09:29Z-1298536 85.72 0.69 193 2015-09-10T08:20:42 6893Z GCA_053203845.1 793877 26 7553_5#61 NP7122-sc-2011-11-08T10:09:29Z-1298536 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463139 1313 GCF_001301615.1 Generic.1.0 85.72 SRA GCF_001301615.1 category_na live 2018-03-09T09:54:39Z NP7122 PRJEB2632 GCF_001301615.1-RS_2025_09_15 SC SC 193 6893Z 2018-03-09T09:54:39Z 2012-05-09T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFQY02 2007 NP7122 2012-05-09T10:03:15Z Velvet current 193 NP7122-sc-2011-11-08T10:09:29Z-1298536 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CFQY02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-28 NP7122 species_match 98.73 SAMEA1463139 15 Streptococcus pneumoniae 94.07 Streptococcus pneumoniae 1313 PRJEB2632 15 current na Best-placed reference protein set; GeneMarkS-2+ 39914 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-15 35B 35B species Homo sapiens 1849 Streptococcus pneumoniae Streptococcus pneumoniae ERS070168 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-05-15T12:05:34.020 99.62 1999633 94.07 1313 2055 2024-02-05T18:13:47.000 6893Z 1999633 39914 1999633 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 169 EBI 100 GCA_053203845.1 GCF_001301615.1-RS_2025_09_15 SLX Streptococcus pneumoniae GCF_001301615.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 99.2446 https://www.ncbi.nlm.nih.gov/nuccore/CFQY00000000.2 2012-05-09T10:03:15Z GCF_001301615.1 haploid public NP7122-sc-2011-11-08T10:09:29Z-1298536 85.72 0.69 193 2015-09-10T08:20:42 6893Z GCA_053203845.1 793877 37 7553_5#61 NP7122-sc-2011-11-08T10:09:29Z-1298536 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463139 1313 GCA_001301615.2 Generic.1.0 85.72 SRA GCA_001301615.2 category_na live 2018-03-09T09:54:39Z NP7122 PRJEB2632 Annotation submitted by SC SC SC 193 6893Z 2018-03-09T09:54:39Z 2012-05-09T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFQY02 2007 NP7122 6.10 2012-05-09T10:03:15Z Velvet current 193 NP7122-sc-2011-11-08T10:09:29Z-1298536 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CFQY02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-28 NP7122 species_match 98.73 SAMEA1032544 15 Streptococcus pneumoniae 93.93 Streptococcus pneumoniae 1313 PRJEB2632 15 current na 38025 type Streptococcus pneumoniae 2015-07-29 35B 35B species Homo sapiens 1911 Streptococcus pneumoniae Streptococcus pneumoniae ERS043916 SC 2004 v1.2.3 2012-01-20T21:36:34.556 99.62 2000398 93.93 1313 1938 2024-02-05T17:27:05.000 2000398 38025 2000398 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 1 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001157805.2 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 99.2446 https://www.ncbi.nlm.nih.gov/nuccore/CNWG00000000.2 2012-01-16T15:10:49Z GCA_001157805.2 haploid public 3097-sc-2011-08-01T09:43:31Z-1249981 85.63 0.62 226 2015-09-10T08:19:45 GCA_053203845.1 794005 26 7001_1#20 3097-sc-2011-08-01T09:43:31Z-1249981 USA: Massachesetts Streptococcus pneumoniae SAMEA1032544 1313 GCF_001157805.1 Generic.1.0 85.63 SRA GCF_001157805.1 category_na live 2018-03-09T09:53:47Z R34-3097 PRJEB2632 GCF_001157805.1-RS_2025_03_31 SC SC 226 2018-03-09T09:53:47Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNWG02 2004 R34-3097 2012-01-16T15:10:49Z Velvet current 226 3097-sc-2011-08-01T09:43:31Z-1249981 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNWG02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 3097 species_match 98.73 SAMEA1032544 15 Streptococcus pneumoniae 93.93 Streptococcus pneumoniae 1313 PRJEB2632 15 current na Best-placed reference protein set; GeneMarkS-2+ 38025 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-03-31 35B 35B species Homo sapiens 1836 Streptococcus pneumoniae Streptococcus pneumoniae ERS043916 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2004 v1.2.3 2012-01-20T21:36:34.556 99.62 2000398 93.93 1313 2031 2024-02-05T17:27:05.000 2000398 38025 2000398 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 159 EBI 100 GCA_053203845.1 GCF_001157805.1-RS_2025_03_31 SLX Streptococcus pneumoniae GCF_001157805.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 99.2446 https://www.ncbi.nlm.nih.gov/nuccore/CNWG00000000.2 2012-01-16T15:10:49Z GCF_001157805.1 haploid public 3097-sc-2011-08-01T09:43:31Z-1249981 85.63 0.62 226 2015-09-10T08:19:45 GCA_053203845.1 794005 36 7001_1#20 3097-sc-2011-08-01T09:43:31Z-1249981 USA: Massachesetts Streptococcus pneumoniae SAMEA1032544 1313 GCA_001157805.2 Generic.1.0 85.63 SRA GCA_001157805.2 category_na live 2018-03-09T09:53:47Z R34-3097 PRJEB2632 Annotation submitted by SC SC SC 226 2018-03-09T09:53:47Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNWG02 2004 R34-3097 6.10 2012-01-16T15:10:49Z Velvet current 226 3097-sc-2011-08-01T09:43:31Z-1249981 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNWG02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 3097 species_match 98.73 SAMEA3389821 2 Streptococcus pneumoniae 94.38 Streptococcus pneumoniae PRJEB3084 2 na 747220 type Streptococcus pneumoniae 2019-05-11 35B 35B Homo sapiens 2063 Streptococcus pneumoniae Streptococcus pneumoniae ERS725924 SC 2005 2016-01-13T08:11:14.303 2075946 94.38 1313 2120 Streptococcus pneumoniae 2024-02-06T15:59:48.000 2075946 747220 2075946 CSF Homo sapiens meningitis from large multi-isolate project ST5396 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901296105.1 type CSF 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWWS000000000.1 2016-01-12T09:01:08Z GCA_901296105.1 haploid public GPS_MW_C13306-sc-2296065 89.29 18 2018-03-10T20:15:02 GCA_053203845.1 822643 57 17870_8#8 GPS_MW_C13306-sc-2296065 Malawi 17870_8#8 SAMEA3389821 1313 Generic.1.0 89.29 SRA category_na live 2019-04-18T16:01:31Z GPSC233 PRJEB3084 SC SC 18 2296065 2019-04-18T16:01:31Z 2016-01-12T00:00:00.000 GPS_MW_C13306 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWWS01 2005 GPSC233 substr. ST5396 2016-01-12T09:01:08Z Prokka current 18 GPS_MW_C13306-sc-2296065 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWWS01 Contig SOURCE_DATABASE_GENBANK Malawi 2019-05-11 GPSC233 species_match 98.74 SAMEA3353259 2 Streptococcus pneumoniae 89.48 Streptococcus pneumoniae PRJEB3084 2 na 542409 type Streptococcus pneumoniae 2019-05-15 35B 35B Homo sapiens 2183 Streptococcus pneumoniae Streptococcus pneumoniae ERS707614 SC 2013 2015-10-14T08:10:43.606 2156414 89.48 1313 2236 Streptococcus pneumoniae 2024-02-06T15:57:08.000 2156414 542409 2156412 NP Homo sapiens Carriage from large multi-isolate project ST361 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901241655.1 type NP 98.61 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAOWG000000000.1 2015-10-13T13:58:36Z GCA_901241655.1 haploid public GPS_ZA_carriage_SP1190-sc-2277857 87.93 22 2018-03-10T20:09:48 GCA_053203845.1 853965 53 17059_6#50 GPS_ZA_carriage_SP1190-sc-2277857 South Africa 17059_6#50 SAMEA3353259 1313 Generic.1.0 87.93 SRA category_na live 2019-04-18T15:56:54Z GPSC5 PRJEB3084 SC SC 22 2277857 2019-04-18T15:56:54Z 2015-10-13T00:00:00.000 40505 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAOWG01 2013 GPSC5 substr. ST361 2015-10-13T13:58:36Z Prokka current 22 GPS_ZA_carriage_SP1190-sc-2277857 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAOWG01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-15 GPSC5 species_match 98.61 SAMEA2382898 5 Streptococcus pneumoniae 91.36 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 137201 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2065 Streptococcus pneumoniae Streptococcus pneumoniae ERS409223 SC 2006/2012 v1.2.4 2014-07-10T08:06:50.790 99.26 2104240 91.36 1313 2113 2024-02-06T07:00:53.000 2106668 126211 2104237 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900034425.1 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FDKT00000000.1 2014-07-09T17:25:44Z GCA_900034425.1 haploid public 2070986_II-sc-1870146 87.61 0.33 37 2015-08-10T19:43:40 GCA_053203845.1 832804 48 12718_5#68 2070986_II-sc-1870146 Netherlands 12718_5#68 SAMEA2382898 1313 GCF_900034425.1 Generic.1.0 87.61 SRA GCF_900034425.1 category_na live 2018-03-09T10:43:45Z 2842STDY5753441 PRJEB4909 GCF_900034425.1-RS_2025_09_21 SC SC 27 1870146 2018-03-09T10:43:45Z 2014-07-09T00:00:00.000 2070986_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDKT01 2006/2012 2842STDY5753441 2014-07-09T17:25:44Z Prokka current 27 2070986_II-sc-1870146 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDKT01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753441 species_match 98.87 SAMEA2382898 5 Streptococcus pneumoniae 91.36 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 137201 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1962 Streptococcus pneumoniae Streptococcus pneumoniae ERS409223 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-10T08:06:50.790 99.26 2104240 91.36 1313 2185 2024-02-06T07:00:53.000 2106668 126211 2104237 blood Homo sapiens Streptococcus pneumoniae Disease 169 EBI 100 GCA_053203845.1 GCF_900034425.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900034425.1 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FDKT00000000.1 2014-07-09T17:25:44Z GCF_900034425.1 haploid public 2070986_II-sc-1870146 87.61 0.33 37 2015-08-10T19:43:40 GCA_053203845.1 832804 54 12718_5#68 2070986_II-sc-1870146 Netherlands 12718_5#68 SAMEA2382898 1313 GCA_900034425.1 Generic.1.0 87.61 SRA GCA_900034425.1 category_na live 2018-03-09T10:43:45Z 2842STDY5753441 PRJEB4909 Annotation submitted by SC SC SC 27 1870146 2018-03-09T10:43:45Z 2014-07-09T00:00:00.000 2070986_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDKT01 2006/2012 2842STDY5753441 6.10 2014-07-09T17:25:44Z Prokka current 27 2070986_II-sc-1870146 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDKT01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753441 species_match 98.87 SAMEA2521611 6 Streptococcus pneumoniae 91.83 Streptococcus pneumoniae 1313 PRJEB3084 7 current na 131165 type Streptococcus pneumoniae 2019-05-12 35D 35D species Homo sapiens 2005 Streptococcus pneumoniae Streptococcus pneumoniae ERS455151 SC 2012 v1.2.4 2014-09-17T09:08:14.536 99.37 2037032 91.83 1313 2050 Streptococcus pneumoniae 2024-02-06T15:55:08.000 2039317 105926 2037025 blood Homo sapiens Streptococcus pneumoniae IPD ST10175 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900054195.2 type blood 98.52 ERC000011 OK 39.5 Streptococcus pneumoniae 91.2362 https://www.ncbi.nlm.nih.gov/nuccore/FHRV00000000.2 2014-09-16T09:22:33Z GCA_900054195.2 haploid public 2012220613-sc-1946903 88.62 0.75 34 2018-03-10T19:14:18 GCA_001457635.1 808346 45 13414_2#60 2012220613-sc-1946903 USA 13414_2#60 SAMEA2521611 1313 GCF_900054195.2 Generic.1.0 88.62 SRA GCF_900054195.2 category_na live 2019-04-18T15:39:23Z GPSC59 PRJEB3084 GCF_900054195.2-RS_2025_12_28 SC SC 25 1946903 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012220613 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHRV02 2012 2245STDY5819577 2014-09-16T09:22:33Z Prokka current 25 2012220613-sc-1946903 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHRV02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC59 species_match 98.52 SAMEA2521611 6 Streptococcus pneumoniae 91.83 Streptococcus pneumoniae 1313 PRJEB3084 7 current na Best-placed reference protein set; GeneMarkS-2+ 131165 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-28 35D 35D species Homo sapiens 1900 Streptococcus pneumoniae Streptococcus pneumoniae ERS455151 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:14.536 99.37 2037032 91.83 1313 2112 Streptococcus pneumoniae 2024-02-06T15:55:08.000 2039317 105926 2037025 blood Homo sapiens Streptococcus pneumoniae IPD 160 ST10175 EBI 100 GCA_001457635.1 GCF_900054195.2-RS_2025_12_28 SLX Streptococcus pneumoniae GCF_900054195.2 type blood 98.52 ERC000011 OK 39.5 Streptococcus pneumoniae 91.2362 https://www.ncbi.nlm.nih.gov/nuccore/FHRV00000000.2 2014-09-16T09:22:33Z GCF_900054195.2 haploid public 2012220613-sc-1946903 88.62 0.75 34 2018-03-10T19:14:18 GCA_001457635.1 808346 52 13414_2#60 2012220613-sc-1946903 USA 13414_2#60 SAMEA2521611 1313 GCA_900054195.2 Generic.1.0 88.62 SRA GCA_900054195.2 category_na live 2019-04-18T15:39:23Z GPSC59 PRJEB3084 Annotation submitted by SC SC SC 25 1946903 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012220613 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHRV02 2012 GPSC59 substr. ST10175 6.10 2014-09-16T09:22:33Z Prokka current 25 2012220613-sc-1946903 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHRV02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC59 species_match 98.52 SAMEA1025491 8 Streptococcus pneumoniae 88.72 Streptococcus pneumoniae 1313 PRJEB2395 8 current na 87276 type Streptococcus pneumoniae 2015-07-18 35C 35C species Homo sapiens 2103 Streptococcus pneumoniae Streptococcus pneumoniae ERS020947 SC 2009-04-14 v1.2.4 2012-01-20T19:58:18.413 99.2 2126732 88.72 1313 2145 2024-02-06T09:03:57.000 2126732 87276 2126721 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001200415.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 69.3105 https://www.ncbi.nlm.nih.gov/nuccore/CRSD00000000.1 2011-11-29T12:03:46Z GCA_001200415.1 haploid public SMRU1437-sc-2011-01-27-1061650 89.39 0.77 60 2015-07-28T08:11:51 GCA_001457635.1 840985 42 6805_2#21 SMRU1437-sc-2011-01-27-1061650 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025491 1313 GCF_001200415.1 Generic.1.0 89.39 SRA GCF_001200415.1 category_na live 2018-03-09T12:05:15Z SMRU1437 PRJEB2395 GCF_001200415.1-RS_2026_01_24 SC SC 60 2018-03-09T12:05:15Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRSD01 2009-04-14 SMRU1437 2011-11-29T12:03:46Z Prokka current 60 SMRU1437-sc-2011-01-27-1061650 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRSD01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1437 species_match 98.72 SAMEA1025491 8 Streptococcus pneumoniae 88.72 Streptococcus pneumoniae 1313 PRJEB2395 8 current na Best-placed reference protein set; GeneMarkS-2+ 87276 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 35C 35C species Homo sapiens 2054 Streptococcus pneumoniae Streptococcus pneumoniae ERS020947 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-14 v1.2.4 2012-01-20T19:58:18.413 99.2 2126732 88.72 1313 2273 2024-02-06T09:03:57.000 2126732 87276 2126721 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 176 EBI 100 GCA_001457635.1 GCF_001200415.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_001200415.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 69.3105 https://www.ncbi.nlm.nih.gov/nuccore/CRSD00000000.1 2011-11-29T12:03:46Z GCF_001200415.1 haploid public SMRU1437-sc-2011-01-27-1061650 89.39 0.77 60 2015-07-28T08:11:51 GCA_001457635.1 840985 43 6805_2#21 SMRU1437-sc-2011-01-27-1061650 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025491 1313 GCA_001200415.1 Generic.1.0 89.39 SRA GCA_001200415.1 category_na live 2018-03-09T12:05:15Z SMRU1437 PRJEB2395 Annotation submitted by SC SC SC 60 2018-03-09T12:05:15Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRSD01 2009-04-14 SMRU1437 6.10 2011-11-29T12:03:46Z Prokka current 60 SMRU1437-sc-2011-01-27-1061650 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRSD01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1437 species_match 98.72 SAMEA1025418 8 Streptococcus pneumoniae 90.71 Streptococcus pneumoniae 1313 PRJEB2395 8 current na 86052 type Streptococcus pneumoniae 2015-07-18 35C 35C species Homo sapiens 2071 Streptococcus pneumoniae Streptococcus pneumoniae ERS020704 SC 2009-01-26 v1.2.4 2012-01-20T19:55:36.986 99.31 2086446 90.71 1313 2112 2024-02-06T09:04:18.000 2086446 86052 2086432 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001194015.1 type nasopharynx 98.84 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CROS00000000.1 2011-11-15T09:28:16Z GCA_001194015.1 haploid public SMRU1194-sc-2011-01-27-1061407 89.66 1.66 45 2015-07-28T08:11:30 GCA_001457635.1 826947 41 6755_6#17 SMRU1194-sc-2011-01-27-1061407 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025418 1313 GCF_001194015.1 Generic.1.0 89.66 SRA GCF_001194015.1 category_na live 2018-03-09T12:11:21Z SMRU1194 PRJEB2395 GCF_001194015.1-RS_2026_01_18 SC SC 45 2018-03-09T12:11:21Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CROS01 2009-01-26 SMRU1194 2011-11-15T09:28:16Z Prokka current 45 SMRU1194-sc-2011-01-27-1061407 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CROS01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1194 species_match 98.84 SAMEA1025418 8 Streptococcus pneumoniae 90.71 Streptococcus pneumoniae 1313 PRJEB2395 8 current na Best-placed reference protein set; GeneMarkS-2+ 86052 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 35C 35C species Homo sapiens 1975 Streptococcus pneumoniae Streptococcus pneumoniae ERS020704 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-01-26 v1.2.4 2012-01-20T19:55:36.986 99.31 2086446 90.71 1313 2182 2024-02-06T09:04:18.000 2086446 86052 2086432 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 163 EBI 100 GCA_001457635.1 GCF_001194015.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001194015.1 type nasopharynx 98.84 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CROS00000000.1 2011-11-15T09:28:16Z GCF_001194015.1 haploid public SMRU1194-sc-2011-01-27-1061407 89.66 1.66 45 2015-07-28T08:11:30 GCA_001457635.1 826947 44 6755_6#17 SMRU1194-sc-2011-01-27-1061407 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025418 1313 GCA_001194015.1 Generic.1.0 89.66 SRA GCA_001194015.1 category_na live 2018-03-09T12:11:21Z SMRU1194 PRJEB2395 Annotation submitted by SC SC SC 45 2018-03-09T12:11:21Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CROS01 2009-01-26 SMRU1194 6.10 2011-11-15T09:28:16Z Prokka current 45 SMRU1194-sc-2011-01-27-1061407 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CROS01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1194 species_match 98.84 SAMEA1025727 9 Streptococcus pneumoniae 90.35 Streptococcus pneumoniae 1313 PRJEB2397 9 current na 84430 type Streptococcus pneumoniae 2015-07-13 35C 35C species Homo sapiens 2017 Streptococcus pneumoniae Streptococcus pneumoniae ERS021388 SC 2009-08-31 v1.2.4 2012-01-20T20:02:58.610 98.46 2074878 90.35 1313 2057 2024-02-06T09:04:43.000 2074900 84430 2074869 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001137785.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 17.4957 https://www.ncbi.nlm.nih.gov/nuccore/CKUJ00000000.1 2011-12-05T16:07:34Z GCA_001137785.1 haploid public SMRU1878-sc-2011-01-27-1062091 88.8 1.22 51 2015-07-28T08:12:06 GCA_001457635.1 820020 40 6823_2#6 SMRU1878-sc-2011-01-27-1062091 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025727 1313 GCF_001137785.1 Generic.1.0 88.8 SRA GCF_001137785.1 category_na live 2018-03-09T12:20:58Z SMRU1878 PRJEB2397 GCF_001137785.1-RS_2026_01_25 SC SC 49 2018-03-09T12:20:58Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKUJ01 2009-08-31 SMRU1878 2011-12-05T16:07:34Z Prokka current 49 SMRU1878-sc-2011-01-27-1062091 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKUJ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU1878 species_match 98.8 SAMEA1025727 9 Streptococcus pneumoniae 90.35 Streptococcus pneumoniae 1313 PRJEB2397 9 current na Best-placed reference protein set; GeneMarkS-2+ 84430 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 35C 35C species Homo sapiens 1923 Streptococcus pneumoniae Streptococcus pneumoniae ERS021388 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-08-31 v1.2.4 2012-01-20T20:02:58.610 98.46 2074878 90.35 1313 2144 2024-02-06T09:04:43.000 2074900 84430 2074869 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 178 EBI 100 GCA_001457635.1 GCF_001137785.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001137785.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 17.4957 https://www.ncbi.nlm.nih.gov/nuccore/CKUJ00000000.1 2011-12-05T16:07:34Z GCF_001137785.1 haploid public SMRU1878-sc-2011-01-27-1062091 88.8 1.22 51 2015-07-28T08:12:06 GCA_001457635.1 820020 43 6823_2#6 SMRU1878-sc-2011-01-27-1062091 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025727 1313 GCA_001137785.1 Generic.1.0 88.8 SRA GCA_001137785.1 category_na live 2018-03-09T12:20:58Z SMRU1878 PRJEB2397 Annotation submitted by SC SC SC 49 2018-03-09T12:20:58Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKUJ01 2009-08-31 SMRU1878 6.10 2011-12-05T16:07:34Z Prokka current 49 SMRU1878-sc-2011-01-27-1062091 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKUJ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU1878 species_match 98.8 SAMEA1023937 9 Streptococcus pneumoniae 88.73 Streptococcus pneumoniae 1313 PRJEB2357 9 current na 84046 type Streptococcus pneumoniae 2015-07-24 35C 35C species Homo sapiens 2121 Streptococcus pneumoniae Streptococcus pneumoniae ERS019614 SC 2008-06-13 v1.2.4 2012-01-20T19:46:07.950 99.2 2133453 88.73 1313 2165 2024-02-05T16:21:49.000 2133453 84046 2133444 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001335375.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 69.3105 https://www.ncbi.nlm.nih.gov/nuccore/CHOK00000000.1 2011-10-11T09:20:04Z GCA_001335375.1 haploid public SMRU456-sc-2011-01-27-1060645 89.68 0.57 48 2016-01-29T08:05:24 GCA_001457635.1 843359 44 6631_4#24 SMRU456-sc-2011-01-27-1060645 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023937 1313 GCF_001335375.1 Generic.1.0 89.68 SRA GCF_001335375.1 category_na live 2018-03-09T09:52:58Z SMRU456 PRJEB2357 GCF_001335375.1-RS_2026_01_20 SC SC 48 2018-03-09T09:52:58Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHOK01 2008-06-13 35C 2011-10-11T09:20:04Z Prokka current 48 SMRU456-sc-2011-01-27-1060645 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHOK01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU456 species_match 98.71 SAMEA1023937 9 Streptococcus pneumoniae 88.73 Streptococcus pneumoniae 1313 PRJEB2357 9 current na Best-placed reference protein set; GeneMarkS-2+ 84046 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-20 35C 35C species Homo sapiens 2054 Streptococcus pneumoniae Streptococcus pneumoniae ERS019614 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-06-13 v1.2.4 2012-01-20T19:46:07.950 99.2 2133453 88.73 1313 2270 2024-02-05T16:21:49.000 2133453 84046 2133444 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 169 EBI 100 GCA_001457635.1 GCF_001335375.1-RS_2026_01_20 SLX Streptococcus pneumoniae GCF_001335375.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 69.3105 https://www.ncbi.nlm.nih.gov/nuccore/CHOK00000000.1 2011-10-11T09:20:04Z GCF_001335375.1 haploid public SMRU456-sc-2011-01-27-1060645 89.68 0.57 48 2016-01-29T08:05:24 GCA_001457635.1 843359 47 6631_4#24 SMRU456-sc-2011-01-27-1060645 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023937 1313 GCA_001335375.1 Generic.1.0 89.68 SRA GCA_001335375.1 category_na live 2018-03-09T09:52:58Z SMRU456 PRJEB2357 Annotation submitted by SC SC SC 48 2018-03-09T09:52:58Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHOK01 2008-06-13 SMRU456 6.10 2011-10-11T09:20:04Z Prokka current 48 SMRU456-sc-2011-01-27-1060645 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHOK01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU456 species_match 98.71 SAMEA1463061 11 Streptococcus pneumoniae 93.1 Streptococcus pneumoniae 1313 PRJEB2632 11 current na 71794 type Streptococcus pneumoniae 2015-07-29 35B 35B species Homo sapiens 1917 Streptococcus pneumoniae Streptococcus pneumoniae ERS069978 SC 2007 v1.2.4 2012-06-06T09:06:34.016 99.6 1997811 93.1 1313 1947 2024-02-05T18:06:31.000 QWSZT 1997811 71794 1997811 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001101965.2 type nasopharynx 98.58 ERC000011 OK 39.5 Streptococcus pneumoniae 99.1294 https://www.ncbi.nlm.nih.gov/nuccore/COCD00000000.2 2012-05-28T10:19:34Z GCA_001101965.2 haploid public CH2075-sc-2011-11-08T10:07:08Z-1298346 88.11 0.62 108 2015-09-10T08:20:48 QWSZT GCA_001457635.1 793659 30 7622_3#63 CH2075-sc-2011-11-08T10:07:08Z-1298346 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463061 1313 GCF_001101965.1 Generic.1.0 88.11 SRA GCF_001101965.1 category_na live 2018-03-09T09:54:30Z CH2075 PRJEB2632 GCF_001101965.1-RS_2025_09_15 SC SC 108 QWSZT 2018-03-09T09:54:30Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COCD02 2007 CH2075 2012-05-28T10:19:34Z Velvet current 108 CH2075-sc-2011-11-08T10:07:08Z-1298346 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COCD02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 CH2075 species_match 98.58 SAMEA1463061 11 Streptococcus pneumoniae 93.1 Streptococcus pneumoniae 1313 PRJEB2632 11 current na Best-placed reference protein set; GeneMarkS-2+ 71794 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-15 35B 35B species Homo sapiens 1860 Streptococcus pneumoniae Streptococcus pneumoniae ERS069978 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:34.016 99.6 1997811 93.1 1313 2069 2024-02-05T18:06:31.000 QWSZT 1997811 71794 1997811 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 160 EBI 100 GCA_001457635.1 GCF_001101965.1-RS_2025_09_15 SLX Streptococcus pneumoniae GCF_001101965.1 type nasopharynx 98.58 ERC000011 OK 39.5 Streptococcus pneumoniae 99.1294 https://www.ncbi.nlm.nih.gov/nuccore/COCD00000000.2 2012-05-28T10:19:34Z GCF_001101965.1 haploid public CH2075-sc-2011-11-08T10:07:08Z-1298346 88.11 0.62 108 2015-09-10T08:20:48 QWSZT GCA_001457635.1 793659 49 7622_3#63 CH2075-sc-2011-11-08T10:07:08Z-1298346 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463061 1313 GCA_001101965.2 Generic.1.0 88.11 SRA GCA_001101965.2 category_na live 2018-03-09T09:54:30Z CH2075 PRJEB2632 Annotation submitted by SC SC SC 108 QWSZT 2018-03-09T09:54:30Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COCD02 2007 CH2075 6.10 2012-05-28T10:19:34Z Velvet current 108 CH2075-sc-2011-11-08T10:07:08Z-1298346 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COCD02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 CH2075 species_match 98.58 SAMEA2521651 8 Streptococcus pneumoniae 92.15 Streptococcus pneumoniae 1313 PRJEB3084 10 current na 72101 type Streptococcus pneumoniae 2019-05-23 35B 35B species Homo sapiens 2119 Streptococcus pneumoniae Streptococcus pneumoniae ERS455191 SC 2012 v1.2.4 2014-09-17T09:08:15.993 98.78 2117017 92.15 1313 2167 Streptococcus pneumoniae 2024-02-06T15:55:09.000 2118396 65262 2117015 blood Homo sapiens Streptococcus pneumoniae IPD ST156 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900063485.2 type blood 98.68 ERC000011 OK 39.5 Streptococcus pneumoniae 31.4577 https://www.ncbi.nlm.nih.gov/nuccore/FHSZ00000000.2 2014-09-16T09:22:32Z GCA_900063485.2 haploid public 2012221165-sc-1946944 88.91 0.62 52 2015-08-10T19:57:11 GCA_053203845.1 838555 48 13414_3#5 2012221165-sc-1946944 USA 13414_3#5 SAMEA2521651 1313 GCF_900063485.2 Generic.1.0 88.91 SRA GCF_900063485.2 category_na live 2019-04-18T15:39:24Z GPSC6 PRJEB3084 GCF_900063485.2-RS_2026_01_31 SC SC 45 1946944 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2012221165 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSZ02 2012 2245STDY5819618 2014-09-16T09:22:32Z Prokka current 45 2012221165-sc-1946944 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSZ02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-23 GPSC6 species_match 98.68 SAMEA2521651 8 Streptococcus pneumoniae 92.15 Streptococcus pneumoniae 1313 PRJEB3084 10 current na Best-placed reference protein set; GeneMarkS-2+ 72101 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 35B 35B species Homo sapiens 1994 Streptococcus pneumoniae Streptococcus pneumoniae ERS455191 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:15.993 98.78 2117017 92.15 1313 2240 Streptococcus pneumoniae 2024-02-06T15:55:09.000 2118396 65262 2117015 blood Homo sapiens Streptococcus pneumoniae IPD 191 ST156 EBI 100 GCA_053203845.1 GCF_900063485.2-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_900063485.2 type blood 98.68 ERC000011 OK 39.5 Streptococcus pneumoniae 31.4577 https://www.ncbi.nlm.nih.gov/nuccore/FHSZ00000000.2 2014-09-16T09:22:32Z GCF_900063485.2 haploid public 2012221165-sc-1946944 88.91 0.62 52 2015-08-10T19:57:11 GCA_053203845.1 838555 55 13414_3#5 2012221165-sc-1946944 USA 13414_3#5 SAMEA2521651 1313 GCA_900063485.2 Generic.1.0 88.91 SRA GCA_900063485.2 category_na live 2019-04-18T15:39:24Z GPSC6 PRJEB3084 Annotation submitted by SC SC SC 45 1946944 2019-04-18T15:39:24Z 2014-09-16T00:00:00.000 2012221165 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSZ02 2012 GPSC6 substr. ST156 6.10 2014-09-16T09:22:32Z Prokka current 45 2012221165-sc-1946944 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSZ02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-23 GPSC6 species_match 98.68 SAMEA1025044 13 Streptococcus pneumoniae 91.58 Streptococcus pneumoniae 1313 PRJEB2393 13 current na 64913 type Streptococcus pneumoniae 2015-07-18 35C 35C species Homo sapiens 2101 Streptococcus pneumoniae Streptococcus pneumoniae ERS020303 SC 2008-10-02 v1.2.4 2012-01-20T19:51:08.696 97.85 2118711 91.58 1313 2139 2024-02-06T09:04:07.000 2118732 64913 2118697 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001206855.1 type nasopharynx 98.78 OK 39.5 Streptococcus pneumoniae 5.8447 https://www.ncbi.nlm.nih.gov/nuccore/CRLU00000000.1 2011-11-15T09:28:20Z GCA_001206855.1 haploid public SMRU793-sc-2011-01-27-1060982 88.43 0.7 77 2015-07-28T08:11:24 GCA_053203845.1 837175 38 6755_2#1 SMRU793-sc-2011-01-27-1060982 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025044 1313 GCF_001206855.1 Generic.1.0 88.43 SRA GCF_001206855.1 category_na live 2018-03-09T12:08:17Z SMRU793 PRJEB2393 GCF_001206855.1-RS_2026_02_08 SC SC 75 2018-03-09T12:08:17Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRLU01 2008-10-02 SMRU793 2011-11-15T09:28:20Z Prokka current 75 SMRU793-sc-2011-01-27-1060982 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRLU01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU793 species_match 98.78 SAMEA1025044 13 Streptococcus pneumoniae 91.58 Streptococcus pneumoniae 1313 PRJEB2393 13 current na Best-placed reference protein set; GeneMarkS-2+ 64913 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-08 35C 35C species Homo sapiens 2016 Streptococcus pneumoniae Streptococcus pneumoniae ERS020303 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-10-02 v1.2.4 2012-01-20T19:51:08.696 97.85 2118711 91.58 1313 2227 2024-02-06T09:04:07.000 2118732 64913 2118697 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 170 EBI 100 GCA_053203845.1 GCF_001206855.1-RS_2026_02_08 SLX Streptococcus pneumoniae GCF_001206855.1 type nasopharynx 98.78 OK 39.5 Streptococcus pneumoniae 5.8447 https://www.ncbi.nlm.nih.gov/nuccore/CRLU00000000.1 2011-11-15T09:28:20Z GCF_001206855.1 haploid public SMRU793-sc-2011-01-27-1060982 88.43 0.7 77 2015-07-28T08:11:24 GCA_053203845.1 837175 41 6755_2#1 SMRU793-sc-2011-01-27-1060982 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025044 1313 GCA_001206855.1 Generic.1.0 88.43 SRA GCA_001206855.1 category_na live 2018-03-09T12:08:17Z SMRU793 PRJEB2393 Annotation submitted by SC SC SC 75 2018-03-09T12:08:17Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRLU01 2008-10-02 SMRU793 6.10 2011-11-15T09:28:20Z Prokka current 75 SMRU793-sc-2011-01-27-1060982 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRLU01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU793 species_match 98.78 SAMEA1028992 11 Streptococcus pneumoniae 88.59 Streptococcus pneumoniae 1313 PRJEB2479 11 current na 63979 type Streptococcus pneumoniae 2015-07-13 35C 35C species Homo sapiens 2102 Streptococcus pneumoniae Streptococcus pneumoniae ERS021832 SC 2010-01-13 v1.2.4 2012-01-20T20:08:43.833 99.31 2131172 88.59 1313 2143 2024-02-06T09:02:39.000 2131182 63979 2131157 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001143325.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLWZ00000000.1 2012-01-10T09:59:59Z GCA_001143325.1 haploid public SMRU2323-sc-2011-01-27-1062536 86.04 0.36 62 2015-07-28T08:12:46 GCA_053203845.1 840999 41 6983_5#19 SMRU2323-sc-2011-01-27-1062536 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028992 1313 GCF_001143325.1 Generic.1.0 86.04 SRA GCF_001143325.1 category_na live 2018-03-09T11:46:54Z SMRU2323 PRJEB2479 GCF_001143325.1-RS_2026_01_22 SC SC 61 2018-03-09T11:46:54Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLWZ01 2010-01-13 SMRU2323 2012-01-10T09:59:59Z Prokka current 61 SMRU2323-sc-2011-01-27-1062536 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLWZ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2323 species_match 98.8 SAMEA1028992 11 Streptococcus pneumoniae 88.59 Streptococcus pneumoniae 1313 PRJEB2479 11 current na Best-placed reference protein set; GeneMarkS-2+ 63979 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 35C 35C species Homo sapiens 2006 Streptococcus pneumoniae Streptococcus pneumoniae ERS021832 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-01-13 v1.2.4 2012-01-20T20:08:43.833 99.31 2131172 88.59 1313 2221 2024-02-06T09:02:39.000 2131182 63979 2131157 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 171 EBI 100 GCA_053203845.1 GCF_001143325.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_001143325.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLWZ00000000.1 2012-01-10T09:59:59Z GCF_001143325.1 haploid public SMRU2323-sc-2011-01-27-1062536 86.04 0.36 62 2015-07-28T08:12:46 GCA_053203845.1 840999 44 6983_5#19 SMRU2323-sc-2011-01-27-1062536 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028992 1313 GCA_001143325.1 Generic.1.0 86.04 SRA GCA_001143325.1 category_na live 2018-03-09T11:46:54Z SMRU2323 PRJEB2479 Annotation submitted by SC SC SC 61 2018-03-09T11:46:54Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLWZ01 2010-01-13 SMRU2323 6.10 2012-01-10T09:59:59Z Prokka current 61 SMRU2323-sc-2011-01-27-1062536 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLWZ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2323 species_match 98.8 SAMEA3431348 1 Streptococcus pneumoniae 89.57 Streptococcus pneumoniae 1313 PRJEB31141 4 current na 2126260 type Streptococcus pneumoniae 2019-03-26 6A 6A species Homo sapiens 2141 Streptococcus pneumoniae Streptococcus pneumoniae ERS740633 WTSI 2000 v1.2.4 2016-01-20T08:06:43.873 98.91 2124116 89.57 1313 2185 Streptococcus pneumoniae 2024-02-06T15:51:44.000 2126260 197069 2124116 CSF Homo sapiens Streptococcus pneumoniae meningitis 1 ST172 EBI 174 GCA_053203845.1 Annotation submitted by WTSI SLX Streptococcus pneumoniae GCA_900795165.1 type CSF 98.66 ERC000011 OK 39.5 Streptococcus pneumoniae 41.0153 2016-01-19T09:16:43Z GCA_900795165.1 haploid public GPS_US_PATH402-sc-2296520 86.71 0.64 23 2017-10-07T09:05:53 GCA_053203845.1 841227 44 18090_1#90-5 GPS_US_PATH402-sc-2296520 Egypt 18090_1#90 SAMEA3431348 1313 GCF_900795165.1 Generic.1.0 86.71 SRA GCF_900795165.1 category_na live 2019-04-18T15:32:20Z GPSC5 PRJEB31141 GCF_900795165.1-RS_2026_02_12 WTSI SC 1 2296520 2019-04-18T15:32:20Z 2016-01-19T00:00:00.000 PATH402 2000 2245STDY6106635 2016-01-19T09:16:43Z velvet current 1 GPS_US_PATH402-sc-2296520 Generic Reference genome for Global Pneumococcal Sequence (GPS ) project Chromosome SOURCE_DATABASE_GENBANK Egypt 2019-03-26 GPSC5 species_match 98.66 SAMEA3431348 1 Streptococcus pneumoniae 89.57 Streptococcus pneumoniae 1313 PRJEB31141 4 current na Best-placed reference protein set; GeneMarkS-2+ 2126260 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-12 6A 6A species Homo sapiens 2004 Streptococcus pneumoniae Streptococcus pneumoniae ERS740633 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2000 v1.2.4 2016-01-20T08:06:43.873 98.91 2124116 89.57 1313 2230 Streptococcus pneumoniae 2024-02-06T15:51:44.000 2126260 197069 2124116 CSF Homo sapiens Streptococcus pneumoniae meningitis 177 1 ST172 EBI 174 GCA_053203845.1 GCF_900795165.1-RS_2026_02_12 SLX Streptococcus pneumoniae GCF_900795165.1 type CSF 98.66 ERC000011 OK 39.5 Streptococcus pneumoniae 41.0153 2016-01-19T09:16:43Z GCF_900795165.1 haploid public GPS_US_PATH402-sc-2296520 86.71 0.64 23 2017-10-07T09:05:53 GCA_053203845.1 841227 49 18090_1#90-5 GPS_US_PATH402-sc-2296520 Egypt 18090_1#90 SAMEA3431348 1313 GCA_900795165.1 Generic.1.0 86.71 SRA GCA_900795165.1 category_na live 2019-04-18T15:32:20Z GPSC5 PRJEB31141 Annotation submitted by WTSI WTSI SC 1 2296520 2019-04-18T15:32:20Z 2016-01-19T00:00:00.000 PATH402 2000 GPSC5 substr. ST172 6.10 2016-01-19T09:16:43Z velvet current 1 GPS_US_PATH402-sc-2296520 Generic Reference genome for Global Pneumococcal Sequence (GPS ) project Chromosome SOURCE_DATABASE_REFSEQ Egypt 2019-03-26 GPSC5 species_match 98.66 SAMEA2238716 5 Streptococcus pneumoniae 89.77 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 135341 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2209 Streptococcus pneumoniae Streptococcus pneumoniae ERS367528 SC 2006/2012 v1.2.4 2014-05-07T08:34:51.930 98.63 2187439 89.77 1313 2255 2024-02-06T05:02:54.000 2191180 93026 2187430 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900021645.1 type CSF 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/FEFD00000000.1 2014-03-18T09:35:29Z GCA_900021645.1 haploid public 2094095-sc-2013-11-05T12:01:13Z-1750078 89.49 0.31 59 2015-08-10T19:24:23 GCA_053203845.1 863479 46 11861_2#56 2094095-sc-2013-11-05T12:01:13Z-1750078 Netherlands 11861_2#56 SAMEA2238716 1313 GCF_900021645.1 Generic.1.0 89.49 SRA GCF_900021645.1 category_na live 2018-03-09T10:27:29Z 2842STDY5644089 PRJEB4909 GCF_900021645.1-RS_2026_01_25 SC SC 45 1750078 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2094095 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEFD01 2006/2012 2842STDY5644089 2014-03-18T09:35:29Z Prokka current 45 2094095-sc-2013-11-05T12:01:13Z-1750078 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEFD01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644089 species_match 98.79 SAMEA2238716 5 Streptococcus pneumoniae 89.77 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 135341 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 2089 Streptococcus pneumoniae Streptococcus pneumoniae ERS367528 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:51.930 98.63 2187439 89.77 1313 2331 2024-02-06T05:02:54.000 2191180 93026 2187430 CSF Homo sapiens Streptococcus pneumoniae Disease 190 EBI 100 GCA_053203845.1 GCF_900021645.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900021645.1 type CSF 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 23.302 https://www.ncbi.nlm.nih.gov/nuccore/FEFD00000000.1 2014-03-18T09:35:29Z GCF_900021645.1 haploid public 2094095-sc-2013-11-05T12:01:13Z-1750078 89.49 0.31 59 2015-08-10T19:24:23 GCA_053203845.1 863479 52 11861_2#56 2094095-sc-2013-11-05T12:01:13Z-1750078 Netherlands 11861_2#56 SAMEA2238716 1313 GCA_900021645.1 Generic.1.0 89.49 SRA GCA_900021645.1 category_na live 2018-03-09T10:27:29Z 2842STDY5644089 PRJEB4909 Annotation submitted by SC SC SC 45 1750078 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2094095 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEFD01 2006/2012 2842STDY5644089 6.10 2014-03-18T09:35:29Z Prokka current 45 2094095-sc-2013-11-05T12:01:13Z-1750078 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEFD01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644089 species_match 98.79 SAMEA1024183 8 Streptococcus pneumoniae 93.12 Streptococcus pneumoniae 1313 PRJEB2357 8 current na 89445 type Streptococcus pneumoniae 2015-07-23 35F 35F species Homo sapiens 2043 Streptococcus pneumoniae Streptococcus pneumoniae ERS019265 SC 2008-02-15 v1.2.4 2012-01-20T19:42:12.910 99.31 2070582 93.12 1313 2082 2024-02-05T23:05:52.000 2070582 89445 2070564 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001336155.1 type nasopharynx 98.8 OK 40.0 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CFHV00000000.1 2011-10-11T09:20:06Z GCA_001336155.1 haploid public SMRU107-sc-2011-01-27-1060296 87.87 2.32 51 2016-01-29T08:05:17 GCA_053203845.1 823791 39 6593_4#11 SMRU107-sc-2011-01-27-1060296 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024183 1313 GCF_001336155.1 Generic.1.0 87.87 SRA GCF_001336155.1 category_na live 2018-03-09T10:03:25Z SMRU107 PRJEB2357 GCF_001336155.1-RS_2026_02_01 SC SC 51 2018-03-09T10:03:25Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFHV01 2008-02-15 35F 2011-10-11T09:20:06Z Prokka current 51 SMRU107-sc-2011-01-27-1060296 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFHV01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-01 SMRU107 species_match 98.8 SAMEA1024183 8 Streptococcus pneumoniae 93.12 Streptococcus pneumoniae 1313 PRJEB2357 8 current na Best-placed reference protein set; GeneMarkS-2+ 89445 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-01 35F 35F species Homo sapiens 1962 Streptococcus pneumoniae Streptococcus pneumoniae ERS019265 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-02-15 v1.2.4 2012-01-20T19:42:12.910 99.31 2070582 93.12 1313 2197 2024-02-05T23:05:52.000 2070582 89445 2070564 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 192 EBI 100 GCA_053203845.1 GCF_001336155.1-RS_2026_02_01 SLX Streptococcus pneumoniae GCF_001336155.1 type nasopharynx 98.8 OK 40.0 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CFHV00000000.1 2011-10-11T09:20:06Z GCF_001336155.1 haploid public SMRU107-sc-2011-01-27-1060296 87.87 2.32 51 2016-01-29T08:05:17 GCA_053203845.1 823791 43 6593_4#11 SMRU107-sc-2011-01-27-1060296 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024183 1313 GCA_001336155.1 Generic.1.0 87.87 SRA GCA_001336155.1 category_na live 2018-03-09T10:03:25Z SMRU107 PRJEB2357 Annotation submitted by SC SC SC 51 2018-03-09T10:03:25Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFHV01 2008-02-15 SMRU107 6.10 2011-10-11T09:20:06Z Prokka current 51 SMRU107-sc-2011-01-27-1060296 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFHV01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-01 SMRU107 species_match 98.8 SAMEA1028607 8 Streptococcus pneumoniae 92.34 Streptococcus pneumoniae 1313 PRJEB2479 8 current na 82718 type Streptococcus pneumoniae 2015-07-13 35F 35F species Homo sapiens 2055 Streptococcus pneumoniae Streptococcus pneumoniae ERS022158 SC 2010-04-22 v1.2.4 2012-01-20T20:12:15.426 99.31 2098594 92.34 1313 2094 2024-02-05T16:32:19.000 2098594 82718 2098579 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001085805.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLLH00000000.1 2012-01-10T09:59:58Z GCA_001085805.1 haploid public SMRU2648-sc-2011-01-27-1062861 88.31 1.09 49 2015-07-28T08:12:50 GCA_053203845.1 832095 39 6938_5#8 SMRU2648-sc-2011-01-27-1062861 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028607 1313 GCF_001085805.1 Generic.1.0 88.31 SRA GCF_001085805.1 category_na live 2018-03-09T09:53:06Z SMRU2648 PRJEB2479 GCF_001085805.1-RS_2026_01_07 SC SC 49 2018-03-09T09:53:06Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLLH01 2010-04-22 SMRU2648 2012-01-10T09:59:58Z Prokka current 49 SMRU2648-sc-2011-01-27-1062861 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLLH01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2648 species_match 98.74 SAMEA1028607 8 Streptococcus pneumoniae 92.34 Streptococcus pneumoniae 1313 PRJEB2479 8 current na Best-placed reference protein set; GeneMarkS-2+ 82718 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-07 35F 35F species Homo sapiens 2011 Streptococcus pneumoniae Streptococcus pneumoniae ERS022158 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-04-22 v1.2.4 2012-01-20T20:12:15.426 99.31 2098594 92.34 1313 2202 2024-02-05T16:32:19.000 2098594 82718 2098579 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 150 EBI 100 GCA_053203845.1 GCF_001085805.1-RS_2026_01_07 SLX Streptococcus pneumoniae GCF_001085805.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLLH00000000.1 2012-01-10T09:59:58Z GCF_001085805.1 haploid public SMRU2648-sc-2011-01-27-1062861 88.31 1.09 49 2015-07-28T08:12:50 GCA_053203845.1 832095 41 6938_5#8 SMRU2648-sc-2011-01-27-1062861 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028607 1313 GCA_001085805.1 Generic.1.0 88.31 SRA GCA_001085805.1 category_na live 2018-03-09T09:53:06Z SMRU2648 PRJEB2479 Annotation submitted by SC SC SC 49 2018-03-09T09:53:06Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLLH01 2010-04-22 SMRU2648 6.10 2012-01-10T09:59:58Z Prokka current 49 SMRU2648-sc-2011-01-27-1062861 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLLH01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2648 species_match 98.74 SAMEA1026670 9 Streptococcus pneumoniae 90.45 Streptococcus pneumoniae 1313 PRJEB2417 9 current na 81752 type Streptococcus pneumoniae 2017-06-28 35F 35F species Homo sapiens 2044 Streptococcus pneumoniae ERS023367 SC 2009-12-16 v1.2.4 2011-09-23T19:14:28.690 98.81 2110310 90.45 1313 2089 2017-06-24T15:51:03.000 2110310 81752 2110304 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900192235.1 type Nasophaynx 98.83 OK 39.5 Streptococcus pneumoniae 33.8967 https://www.ncbi.nlm.nih.gov/nuccore/FYTE00000000.1 2011-09-20 GCA_900192235.1 haploid ERS023367 86.98 1.64 55 2017-06-28T08:06:25 GCA_053203845.1 836245 45 6512_7#5 United Kingdom UoS4187-sc-2011-02-14-1078421; 6512_75 1313 GCF_900192235.1 Generic.1.0 86.98 SRA Sample Description GCF_900192235.1 category_na live 2017-06-22 UoS4187 PRJEB2417 GCF_900192235.1-RS_2025_09_01 SC 55 1078421 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYTE01 2009-12-16 UoS4187 Prokka current 55 ERS023367 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYTE01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-28 UoS4187 species_match 98.83 SAMEA1026670 9 Streptococcus pneumoniae 90.45 Streptococcus pneumoniae 1313 PRJEB2417 9 current na Best-placed reference protein set; GeneMarkS-2+ 81752 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-01 35F 35F species Homo sapiens 1951 Streptococcus pneumoniae ERS023367 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-12-16 v1.2.4 2011-09-23T19:14:28.690 98.81 2110310 90.45 1313 2157 2017-06-24T15:51:03.000 2110310 81752 2110304 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 160 EBI 100 GCA_053203845.1 GCF_900192235.1-RS_2025_09_01 SLX Streptococcus pneumoniae GCF_900192235.1 type Nasophaynx 98.83 OK 39.5 Streptococcus pneumoniae 33.8967 https://www.ncbi.nlm.nih.gov/nuccore/FYTE00000000.1 2011-09-20 GCF_900192235.1 haploid ERS023367 86.98 1.64 55 2017-06-28T08:06:25 GCA_053203845.1 836245 46 6512_7#5 United Kingdom UoS4187-sc-2011-02-14-1078421; 6512_75 1313 GCA_900192235.1 Generic.1.0 86.98 SRA Sample Description GCA_900192235.1 category_na live 2017-06-22 UoS4187 PRJEB2417 Annotation submitted by SC SC 55 1078421 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYTE01 2009-12-16 UoS4187 6.10 Prokka current 55 ERS023367 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYTE01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-28 UoS4187 species_match 98.83 SAMEA2239053 7 Streptococcus pneumoniae 92.7 Streptococcus pneumoniae 1313 PRJEB4909 10 current na 117076 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2050 Streptococcus pneumoniae Streptococcus pneumoniae ERS367865 SC 2006/2012 v1.2.4 2014-05-07T08:35:17.600 98.64 2087569 92.7 1313 2095 2024-02-06T05:15:26.000 2089864 79445 2087569 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900025175.1 type CSF 98.92 ERC000011 OK 39.5 Streptococcus pneumoniae 24.1214 https://www.ncbi.nlm.nih.gov/nuccore/FCRV00000000.1 2014-03-18T09:35:29Z GCA_900025175.1 haploid public 990812-sc-2013-11-05T12:07:09Z-1750422 88.19 0.33 45 2015-08-10T19:24:39 GCA_053203845.1 826569 45 11860_7#12 990812-sc-2013-11-05T12:07:09Z-1750422 Netherlands 11860_7#12 SAMEA2239053 1313 GCF_900025175.1 Generic.1.0 88.19 SRA GCF_900025175.1 category_na live 2018-03-09T10:28:57Z 2842STDY5644433 PRJEB4909 GCF_900025175.1-RS_2025_12_13 SC SC 32 1750422 2018-03-09T10:28:57Z 2014-03-18T00:00:00.000 990812 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCRV01 2006/2012 2842STDY5644433 2014-03-18T09:35:29Z Prokka current 32 990812-sc-2013-11-05T12:07:09Z-1750422 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCRV01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644433 species_match 98.92 SAMEA2239053 7 Streptococcus pneumoniae 92.7 Streptococcus pneumoniae 1313 PRJEB4909 10 current na Best-placed reference protein set; GeneMarkS-2+ 117076 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-13 species Homo sapiens 1955 Streptococcus pneumoniae Streptococcus pneumoniae ERS367865 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:17.600 98.64 2087569 92.7 1313 2172 2024-02-06T05:15:26.000 2089864 79445 2087569 CSF Homo sapiens Streptococcus pneumoniae Disease 166 EBI 100 GCA_053203845.1 GCF_900025175.1-RS_2025_12_13 SLX Streptococcus pneumoniae GCF_900025175.1 type CSF 98.92 ERC000011 OK 39.5 Streptococcus pneumoniae 24.1214 https://www.ncbi.nlm.nih.gov/nuccore/FCRV00000000.1 2014-03-18T09:35:29Z GCF_900025175.1 haploid public 990812-sc-2013-11-05T12:07:09Z-1750422 88.19 0.33 45 2015-08-10T19:24:39 GCA_053203845.1 826569 51 11860_7#12 990812-sc-2013-11-05T12:07:09Z-1750422 Netherlands 11860_7#12 SAMEA2239053 1313 GCA_900025175.1 Generic.1.0 88.19 SRA GCA_900025175.1 category_na live 2018-03-09T10:28:57Z 2842STDY5644433 PRJEB4909 Annotation submitted by SC SC SC 32 1750422 2018-03-09T10:28:57Z 2014-03-18T00:00:00.000 990812 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCRV01 2006/2012 2842STDY5644433 6.10 2014-03-18T09:35:29Z Prokka current 32 990812-sc-2013-11-05T12:07:09Z-1750422 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCRV01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644433 species_match 98.92 SAMEA1025461 10 Streptococcus pneumoniae 91.23 Streptococcus pneumoniae 1313 PRJEB2395 10 current na 78968 type Streptococcus pneumoniae 2015-07-24 35F 35F species Homo sapiens 2044 Streptococcus pneumoniae Streptococcus pneumoniae ERS020710 SC 2009-01-28 v1.2.4 2012-01-20T19:55:40.850 99.1 2073660 91.23 1313 2085 2024-02-06T09:04:16.000 2073682 78307 2073643 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001341995.1 type nasopharynx 98.87 OK 40.0 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CGXJ00000000.1 2011-11-15T09:28:16Z GCA_001341995.1 haploid public SMRU1200-sc-2011-01-27-1061413 86.22 3.17 62 2015-07-28T08:11:30 GCA_053203845.1 824660 41 6755_6#23 SMRU1200-sc-2011-01-27-1061413 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025461 1313 GCF_001341995.1 Generic.1.0 86.22 SRA GCF_001341995.1 category_na live 2018-03-09T12:10:44Z SMRU1200 PRJEB2395 GCF_001341995.1-RS_2026_01_24 SC SC 61 2018-03-09T12:10:44Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CGXJ01 2009-01-28 SMRU1200 2011-11-15T09:28:16Z Prokka current 61 SMRU1200-sc-2011-01-27-1061413 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CGXJ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU1200 species_match 98.87 SAMEA1025461 10 Streptococcus pneumoniae 91.23 Streptococcus pneumoniae 1313 PRJEB2395 10 current na Best-placed reference protein set; GeneMarkS-2+ 78968 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 35F 35F species Homo sapiens 1982 Streptococcus pneumoniae Streptococcus pneumoniae ERS020710 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-01-28 v1.2.4 2012-01-20T19:55:40.850 99.1 2073660 91.23 1313 2201 2024-02-06T09:04:16.000 2073682 78307 2073643 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 175 EBI 100 GCA_053203845.1 GCF_001341995.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_001341995.1 type nasopharynx 98.87 OK 40.0 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CGXJ00000000.1 2011-11-15T09:28:16Z GCF_001341995.1 haploid public SMRU1200-sc-2011-01-27-1061413 86.22 3.17 62 2015-07-28T08:11:30 GCA_053203845.1 824660 44 6755_6#23 SMRU1200-sc-2011-01-27-1061413 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025461 1313 GCA_001341995.1 Generic.1.0 86.22 SRA GCA_001341995.1 category_na live 2018-03-09T12:10:44Z SMRU1200 PRJEB2395 Annotation submitted by SC SC SC 61 2018-03-09T12:10:44Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CGXJ01 2009-01-28 SMRU1200 6.10 2011-11-15T09:28:16Z Prokka current 61 SMRU1200-sc-2011-01-27-1061413 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CGXJ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU1200 species_match 98.87 SAMEA1023922 10 Streptococcus pneumoniae 91.75 Streptococcus pneumoniae 1313 PRJEB2357 10 current na 78148 type Streptococcus pneumoniae 2015-07-11 35F 35F species Homo sapiens 2079 Streptococcus pneumoniae Streptococcus pneumoniae ERS019515 SC 2008-05-09 v1.2.4 2012-01-20T19:45:00.743 99.06 2101423 91.75 1313 2120 2024-02-05T16:20:42.000 2101423 78148 2101412 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001129525.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CKHL00000000.1 2011-10-11T09:20:04Z GCA_001129525.1 haploid public SMRU357-sc-2011-01-27-1060546 87.86 0.47 61 2016-01-29T08:05:20 GCA_053203845.1 833972 41 6631_2#21 SMRU357-sc-2011-01-27-1060546 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023922 1313 GCF_001129525.1 Generic.1.0 87.86 SRA GCF_001129525.1 category_na live 2018-03-09T09:52:57Z SMRU357 PRJEB2357 GCF_001129525.1-RS_2026_01_13 SC SC 61 2018-03-09T09:52:57Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKHL01 2008-05-09 35F 2011-10-11T09:20:04Z Prokka current 61 SMRU357-sc-2011-01-27-1060546 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKHL01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU357 species_match 98.71 SAMEA1023922 10 Streptococcus pneumoniae 91.75 Streptococcus pneumoniae 1313 PRJEB2357 10 current na Best-placed reference protein set; GeneMarkS-2+ 78148 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-13 35F 35F species Homo sapiens 2029 Streptococcus pneumoniae Streptococcus pneumoniae ERS019515 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-05-09 v1.2.4 2012-01-20T19:45:00.743 99.06 2101423 91.75 1313 2230 2024-02-05T16:20:42.000 2101423 78148 2101412 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 157 EBI 100 GCA_053203845.1 GCF_001129525.1-RS_2026_01_13 SLX Streptococcus pneumoniae GCF_001129525.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 51.7637 https://www.ncbi.nlm.nih.gov/nuccore/CKHL00000000.1 2011-10-11T09:20:04Z GCF_001129525.1 haploid public SMRU357-sc-2011-01-27-1060546 87.86 0.47 61 2016-01-29T08:05:20 GCA_053203845.1 833972 44 6631_2#21 SMRU357-sc-2011-01-27-1060546 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023922 1313 GCA_001129525.1 Generic.1.0 87.86 SRA GCA_001129525.1 category_na live 2018-03-09T09:52:57Z SMRU357 PRJEB2357 Annotation submitted by SC SC SC 61 2018-03-09T09:52:57Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKHL01 2008-05-09 SMRU357 6.10 2011-10-11T09:20:04Z Prokka current 61 SMRU357-sc-2011-01-27-1060546 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKHL01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU357 species_match 98.71 SAMEA2521576 9 Streptococcus pneumoniae 91.57 Streptococcus pneumoniae 1313 PRJEB3084 9 current na 87308 type Streptococcus pneumoniae 2019-05-22 35F 35F species Homo sapiens 2047 Streptococcus pneumoniae Streptococcus pneumoniae ERS455116 SC 2012 v1.2.4 2014-09-17T09:08:13.356 99.26 2096946 91.57 1313 2091 Streptococcus pneumoniae 2024-02-06T15:55:07.000 2098314 77869 2096939 blood Homo sapiens Streptococcus pneumoniae IPD ST1635 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900060875.2 type blood 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FHQR00000000.2 2014-09-16T09:22:32Z GCA_900060875.2 haploid public 2012215830-sc-1946868 87.5 0.33 48 2018-03-10T19:14:17 GCA_053203845.1 830088 44 13414_2#25 2012215830-sc-1946868 USA 13414_2#25 SAMEA2521576 1313 GCF_900060875.2 Generic.1.0 87.5 SRA GCF_900060875.2 category_na live 2019-04-18T15:39:23Z GPSC36 PRJEB3084 GCF_900060875.2-RS_2026_01_20 SC SC 43 1946868 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012215830 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQR02 2012 2245STDY5819542 2014-09-16T09:22:32Z Prokka current 43 2012215830-sc-1946868 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQR02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-22 GPSC36 species_match 98.89 SAMEA2521576 9 Streptococcus pneumoniae 91.57 Streptococcus pneumoniae 1313 PRJEB3084 9 current na Best-placed reference protein set; GeneMarkS-2+ 87308 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-20 35F 35F species Homo sapiens 1957 Streptococcus pneumoniae Streptococcus pneumoniae ERS455116 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:13.356 99.26 2096946 91.57 1313 2179 Streptococcus pneumoniae 2024-02-06T15:55:07.000 2098314 77869 2096939 blood Homo sapiens Streptococcus pneumoniae IPD 172 ST1635 EBI 100 GCA_053203845.1 GCF_900060875.2-RS_2026_01_20 SLX Streptococcus pneumoniae GCF_900060875.2 type blood 98.89 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FHQR00000000.2 2014-09-16T09:22:32Z GCF_900060875.2 haploid public 2012215830-sc-1946868 87.5 0.33 48 2018-03-10T19:14:17 GCA_053203845.1 830088 50 13414_2#25 2012215830-sc-1946868 USA 13414_2#25 SAMEA2521576 1313 GCA_900060875.2 Generic.1.0 87.5 SRA GCA_900060875.2 category_na live 2019-04-18T15:39:23Z GPSC36 PRJEB3084 Annotation submitted by SC SC SC 43 1946868 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012215830 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHQR02 2012 GPSC36 substr. ST1635 6.10 2014-09-16T09:22:32Z Prokka current 43 2012215830-sc-1946868 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHQR02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-22 GPSC36 species_match 98.89 SAMEA1023666 9 Streptococcus pneumoniae 92.39 Streptococcus pneumoniae 1313 PRJEB2357 9 current na 77650 type Streptococcus pneumoniae 2015-07-11 35F 35F species Homo sapiens 1983 Streptococcus pneumoniae Streptococcus pneumoniae ERS019409 SC 2008-04-03 v1.2.4 2012-01-20T19:43:49.500 99.31 2028535 92.39 1313 2025 2024-02-05T16:19:14.000 2028535 77650 2028528 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001095545.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKOC00000000.1 2011-11-07T13:55:52Z GCA_001095545.1 haploid public SMRU251-sc-2011-01-27-1060440 85.41 1.46 61 2015-07-28T08:11:16 GCA_053203845.1 802983 42 6673_8#11 SMRU251-sc-2011-01-27-1060440 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1023666 1313 GCF_001095545.1 Generic.1.0 85.41 SRA GCF_001095545.1 category_na live 2018-03-09T09:52:56Z SMRU251 PRJEB2357 GCF_001095545.1-RS_2026_01_05 SC SC 61 2018-03-09T09:52:56Z 2011-11-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKOC01 2008-04-03 SMRU251 2011-11-07T13:55:52Z Prokka current 61 SMRU251-sc-2011-01-27-1060440 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKOC01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU251 species_match 98.72 SAMEA1023666 9 Streptococcus pneumoniae 92.39 Streptococcus pneumoniae 1313 PRJEB2357 9 current na Best-placed reference protein set; GeneMarkS-2+ 77650 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-05 35F 35F species Homo sapiens 1930 Streptococcus pneumoniae Streptococcus pneumoniae ERS019409 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-04-03 v1.2.4 2012-01-20T19:43:49.500 99.31 2028535 92.39 1313 2118 2024-02-05T16:19:14.000 2028535 77650 2028528 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 145 EBI 100 GCA_053203845.1 GCF_001095545.1-RS_2026_01_05 SLX Streptococcus pneumoniae GCF_001095545.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKOC00000000.1 2011-11-07T13:55:52Z GCF_001095545.1 haploid public SMRU251-sc-2011-01-27-1060440 85.41 1.46 61 2015-07-28T08:11:16 GCA_053203845.1 802983 43 6673_8#11 SMRU251-sc-2011-01-27-1060440 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1023666 1313 GCA_001095545.1 Generic.1.0 85.41 SRA GCA_001095545.1 category_na live 2018-03-09T09:52:56Z SMRU251 PRJEB2357 Annotation submitted by SC SC SC 61 2018-03-09T09:52:56Z 2011-11-07T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKOC01 2008-04-03 SMRU251 6.10 2011-11-07T13:55:52Z Prokka current 61 SMRU251-sc-2011-01-27-1060440 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKOC01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU251 species_match 98.72 SAMEA2162916 1 Streptococcus pneumoniae 90.83 Streptococcus pneumoniae 1313 PRJEB31141 4 current na 2105198 type Streptococcus pneumoniae 2019-02-20 6B 6B species Homo sapiens 2073 Streptococcus pneumoniae Streptococcus pneumoniae ERS322632 WTSI 1999 v1.2.4 2014-05-06T16:11:19.143 99.31 2103556 90.83 1313 2109 Streptococcus pneumoniae 2024-02-06T15:54:38.000 2105198 128215 2103556 blood Homo sapiens Streptococcus pneumoniae Bacteremia 1 ST1092 EBI 217 GCA_053203845.1 Annotation submitted by WTSI SLX Streptococcus pneumoniae GCA_900692635.1 type blood 98.69 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 2014-03-04T09:16:33Z GCA_900692635.1 haploid public 5102_99-sc-2013-07-03T13:38:07Z-1659461 87.08 0.31 26 2017-10-07T09:05:49 GCA_053203845.1 831233 36 11822_1#94-2 5102_99-sc-2013-07-03T13:38:07Z-1659461 USA 11822_1#94 SAMEA2162916 1313 GCF_900692635.1 Generic.1.0 87.08 SRA GCF_900692635.1 category_na live 2019-04-18T15:39:17Z GPSC76 PRJEB31141 GCF_900692635.1-RS_2026_02_12 WTSI SC 1 1659461 2019-04-18T15:39:17Z 2014-03-04T00:00:00.000 5102_99 1999 2245STDY5562600 2014-03-04T09:16:33Z velvet current 1 5102_99-sc-2013-07-03T13:38:07Z-1659461 Generic Reference genome for Global Pneumococcal Sequence (GPS ) project Chromosome SOURCE_DATABASE_GENBANK USA 2019-02-20 GPSC76 species_match 98.69 SAMEA2162916 1 Streptococcus pneumoniae 90.83 Streptococcus pneumoniae 1313 PRJEB31141 4 current na Best-placed reference protein set; GeneMarkS-2+ 2105198 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-12 6B 6B species Homo sapiens 1976 Streptococcus pneumoniae Streptococcus pneumoniae ERS322632 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 1999 v1.2.4 2014-05-06T16:11:19.143 99.31 2103556 90.83 1313 2196 Streptococcus pneumoniae 2024-02-06T15:54:38.000 2105198 128215 2103556 blood Homo sapiens Streptococcus pneumoniae Bacteremia 179 1 ST1092 EBI 217 GCA_053203845.1 GCF_900692635.1-RS_2026_02_12 SLX Streptococcus pneumoniae GCF_900692635.1 type blood 98.69 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 2014-03-04T09:16:33Z GCF_900692635.1 haploid public 5102_99-sc-2013-07-03T13:38:07Z-1659461 87.08 0.31 26 2017-10-07T09:05:49 GCA_053203845.1 831233 41 11822_1#94-2 5102_99-sc-2013-07-03T13:38:07Z-1659461 USA 11822_1#94 SAMEA2162916 1313 GCA_900692635.1 Generic.1.0 87.08 SRA GCA_900692635.1 category_na live 2019-04-18T15:39:17Z GPSC76 PRJEB31141 Annotation submitted by WTSI WTSI SC 1 1659461 2019-04-18T15:39:17Z 2014-03-04T00:00:00.000 5102_99 1999 GPSC76 substr. ST1092 6.10 2014-03-04T09:16:33Z velvet current 1 5102_99-sc-2013-07-03T13:38:07Z-1659461 Generic Reference genome for Global Pneumococcal Sequence (GPS ) project Chromosome SOURCE_DATABASE_REFSEQ USA 2019-02-20 GPSC76 species_match 98.69 SAMEA2156552 5 Streptococcus pneumoniae 89.27 Streptococcus pneumoniae 1313 PRJEB4477 5 current na 132397 type Streptococcus pneumoniae 2016-02-12 6 6 species Homo sapiens 2056 Streptococcus pneumoniae Streptococcus pneumoniae ERS325006 SC 2012 v1.2.4 2013-11-19T19:42:09.726 98.19 2075388 89.27 1313 2102 2024-02-06T03:11:34.000 2075388 132397 2075380 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900057195.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FHWV00000000.1 2013-11-18T09:24:43Z GCA_900057195.1 haploid public 384_196_6_11_2012-sc-2013-07-15T10:30:19Z-1658772 88.53 0.31 31 2016-02-09T08:05:50 GCA_001679515.1 822185 46 10678_6#27 384_196_6_11_2012-sc-2013-07-15T10:30:19Z-1658772 United Kingdom: England 10678_6#27 SAMEA2156552 1313 GCF_900057195.1 Generic.1.0 88.53 SRA GCF_900057195.1 category_na live 2018-03-09T10:18:50Z 2690STDY5561911 PRJEB4477 GCF_900057195.1-RS_2026_01_03 SC SC 31 1658772 2018-03-09T10:18:50Z 2013-11-18T00:00:00.000 Box4B3 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHWV01 2012 2690STDY5561911 2013-11-18T09:24:43Z Prokka current 31 384_196_6_11_2012-sc-2013-07-15T10:30:19Z-1658772 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FHWV01 Contig SOURCE_DATABASE_GENBANK United Kingdom: England 2016-02-12 2690STDY5561911 species_match 98.73 SAMEA2156552 5 Streptococcus pneumoniae 89.27 Streptococcus pneumoniae 1313 PRJEB4477 5 current na Best-placed reference protein set; GeneMarkS-2+ 132397 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-03 6 6 species Homo sapiens 1927 Streptococcus pneumoniae Streptococcus pneumoniae ERS325006 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2013-11-19T19:42:09.726 98.19 2075388 89.27 1313 2154 2024-02-06T03:11:34.000 2075388 132397 2075380 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 174 EBI 100 GCA_001679515.1 GCF_900057195.1-RS_2026_01_03 SLX Streptococcus pneumoniae GCF_900057195.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FHWV00000000.1 2013-11-18T09:24:43Z GCF_900057195.1 haploid public 384_196_6_11_2012-sc-2013-07-15T10:30:19Z-1658772 88.53 0.31 31 2016-02-09T08:05:50 GCA_001679515.1 822185 53 10678_6#27 384_196_6_11_2012-sc-2013-07-15T10:30:19Z-1658772 United Kingdom: England 10678_6#27 SAMEA2156552 1313 GCA_900057195.1 Generic.1.0 88.53 SRA GCA_900057195.1 category_na live 2018-03-09T10:18:50Z 2690STDY5561911 PRJEB4477 Annotation submitted by SC SC SC 31 1658772 2018-03-09T10:18:50Z 2013-11-18T00:00:00.000 Box4B3 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHWV01 2012 2690STDY5561911 6.10 2013-11-18T09:24:43Z Prokka current 31 384_196_6_11_2012-sc-2013-07-15T10:30:19Z-1658772 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FHWV01 Contig SOURCE_DATABASE_REFSEQ United Kingdom: England 2016-02-12 2690STDY5561911 species_match 98.73 SAMEA1028881 9 Streptococcus pneumoniae 90.3 Streptococcus pneumoniae 1313 PRJEB2479 9 current na 86133 type Streptococcus pneumoniae 2015-07-13 6A 6A species Homo sapiens 2131 Streptococcus pneumoniae Streptococcus pneumoniae ERS022113 SC 2010-04-12 v1.2.4 2012-01-20T20:11:47.173 99.15 2127891 90.3 1313 2174 2024-02-05T16:31:04.000 2127901 86133 2127875 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001107965.1 type nasopharynx 98.62 OK 40.0 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CLSR00000000.1 2012-01-16T15:10:28Z GCA_001107965.1 haploid public SMRU2603-sc-2011-01-27-1062816 87.57 2.87 59 2015-07-28T08:12:54 GCA_053203845.1 846297 43 6972_4#11 SMRU2603-sc-2011-01-27-1062816 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028881 1313 GCF_001107965.1 Generic.1.0 87.57 SRA GCF_001107965.1 category_na live 2018-03-09T09:53:06Z SMRU2603 PRJEB2479 GCF_001107965.1-RS_2026_01_20 SC SC 58 2018-03-09T09:53:06Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLSR01 2010-04-12 SMRU2603 2012-01-16T15:10:28Z Prokka current 58 SMRU2603-sc-2011-01-27-1062816 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLSR01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2603 species_match 98.62 SAMEA1028881 9 Streptococcus pneumoniae 90.3 Streptococcus pneumoniae 1313 PRJEB2479 9 current na Best-placed reference protein set; GeneMarkS-2+ 86133 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-20 6A 6A species Homo sapiens 2040 Streptococcus pneumoniae Streptococcus pneumoniae ERS022113 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-04-12 v1.2.4 2012-01-20T20:11:47.173 99.15 2127891 90.3 1313 2251 2024-02-05T16:31:04.000 2127901 86133 2127875 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 166 EBI 100 GCA_053203845.1 GCF_001107965.1-RS_2026_01_20 SLX Streptococcus pneumoniae GCF_001107965.1 type nasopharynx 98.62 OK 40.0 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CLSR00000000.1 2012-01-16T15:10:28Z GCF_001107965.1 haploid public SMRU2603-sc-2011-01-27-1062816 87.57 2.87 59 2015-07-28T08:12:54 GCA_053203845.1 846297 45 6972_4#11 SMRU2603-sc-2011-01-27-1062816 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028881 1313 GCA_001107965.1 Generic.1.0 87.57 SRA GCA_001107965.1 category_na live 2018-03-09T09:53:06Z SMRU2603 PRJEB2479 Annotation submitted by SC SC SC 58 2018-03-09T09:53:06Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLSR01 2010-04-12 SMRU2603 6.10 2012-01-16T15:10:28Z Prokka current 58 SMRU2603-sc-2011-01-27-1062816 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLSR01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2603 species_match 98.62 SAMEA1025975 8 Streptococcus pneumoniae 92.92 Streptococcus pneumoniae 1313 PRJEB2397 8 current na 80734 type Streptococcus pneumoniae 2015-07-13 6A 6A species Homo sapiens 2078 Streptococcus pneumoniae Streptococcus pneumoniae ERS021770 SC 2009-12-28 v1.2.4 2012-01-20T20:07:50.740 98.82 2072538 92.92 1313 2122 2024-02-05T16:27:06.000 2072678 80734 2072532 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001167445.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 34.2232 https://www.ncbi.nlm.nih.gov/nuccore/CLVG00000000.1 2012-01-10T10:00:00Z GCA_001167445.1 haploid public SMRU2261-sc-2011-01-27-1062474 87.77 0.31 39 2015-07-28T08:12:42 GCA_053203845.1 822915 44 6983_3#53 SMRU2261-sc-2011-01-27-1062474 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025975 1313 GCF_001167445.1 Generic.1.0 87.77 SRA GCF_001167445.1 category_na live 2018-03-09T09:53:03Z SMRU2261 PRJEB2397 GCF_001167445.1-RS_2026_01_19 SC SC 38 2018-03-09T09:53:03Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLVG01 2009-12-28 SMRU2261 2012-01-10T10:00:00Z Prokka current 38 SMRU2261-sc-2011-01-27-1062474 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLVG01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2261 species_match 98.73 SAMEA1025975 8 Streptococcus pneumoniae 92.92 Streptococcus pneumoniae 1313 PRJEB2397 8 current na Best-placed reference protein set; GeneMarkS-2+ 80734 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 6A 6A species Homo sapiens 1982 Streptococcus pneumoniae Streptococcus pneumoniae ERS021770 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-12-28 v1.2.4 2012-01-20T20:07:50.740 98.82 2072538 92.92 1313 2197 2024-02-05T16:27:06.000 2072678 80734 2072532 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 167 EBI 100 GCA_053203845.1 GCF_001167445.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001167445.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 34.2232 https://www.ncbi.nlm.nih.gov/nuccore/CLVG00000000.1 2012-01-10T10:00:00Z GCF_001167445.1 haploid public SMRU2261-sc-2011-01-27-1062474 87.77 0.31 39 2015-07-28T08:12:42 GCA_053203845.1 822915 48 6983_3#53 SMRU2261-sc-2011-01-27-1062474 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025975 1313 GCA_001167445.1 Generic.1.0 87.77 SRA GCA_001167445.1 category_na live 2018-03-09T09:53:03Z SMRU2261 PRJEB2397 Annotation submitted by SC SC SC 38 2018-03-09T09:53:03Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLVG01 2009-12-28 SMRU2261 6.10 2012-01-10T10:00:00Z Prokka current 38 SMRU2261-sc-2011-01-27-1062474 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLVG01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2261 species_match 98.73 SAMEA2239294 6 Streptococcus pneumoniae 89.84 Streptococcus pneumoniae 1313 PRJEB4909 10 current na 120616 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2186 Streptococcus pneumoniae Streptococcus pneumoniae ERS368106 SC 2006/2012 v1.2.4 2014-05-07T08:35:36.213 99.26 2153590 89.84 1313 2233 2024-02-06T05:09:28.000 2157516 77479 2153590 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900026425.1 type CSF 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FDVC00000000.1 2014-03-18T09:35:30Z GCA_900026425.1 haploid public 2020316-sc-2013-11-05T12:11:15Z-1750667 88.17 0.31 54 2015-08-10T19:24:51 GCA_053203845.1 851357 47 11861_5#69 2020316-sc-2013-11-05T12:11:15Z-1750667 Netherlands 11861_5#69 SAMEA2239294 1313 GCF_900026425.1 Generic.1.0 88.17 SRA GCF_900026425.1 category_na live 2018-03-09T10:28:17Z 2842STDY5644678 PRJEB4909 GCF_900026425.1-RS_2025_09_21 SC SC 39 1750667 2018-03-09T10:28:17Z 2014-03-18T00:00:00.000 2020316 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDVC01 2006/2012 2842STDY5644678 2014-03-18T09:35:30Z Prokka current 39 2020316-sc-2013-11-05T12:11:15Z-1750667 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDVC01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644678 species_match 98.75 SAMEA2239294 6 Streptococcus pneumoniae 89.84 Streptococcus pneumoniae 1313 PRJEB4909 10 current na Best-placed reference protein set; GeneMarkS-2+ 120616 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 2057 Streptococcus pneumoniae Streptococcus pneumoniae ERS368106 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:36.213 99.26 2153590 89.84 1313 2295 2024-02-06T05:09:28.000 2157516 77479 2153590 CSF Homo sapiens Streptococcus pneumoniae Disease 186 EBI 100 GCA_053203845.1 GCF_900026425.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900026425.1 type CSF 98.75 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/FDVC00000000.1 2014-03-18T09:35:30Z GCF_900026425.1 haploid public 2020316-sc-2013-11-05T12:11:15Z-1750667 88.17 0.31 54 2015-08-10T19:24:51 GCA_053203845.1 851357 52 11861_5#69 2020316-sc-2013-11-05T12:11:15Z-1750667 Netherlands 11861_5#69 SAMEA2239294 1313 GCA_900026425.1 Generic.1.0 88.17 SRA GCA_900026425.1 category_na live 2018-03-09T10:28:17Z 2842STDY5644678 PRJEB4909 Annotation submitted by SC SC SC 39 1750667 2018-03-09T10:28:17Z 2014-03-18T00:00:00.000 2020316 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDVC01 2006/2012 2842STDY5644678 6.10 2014-03-18T09:35:30Z Prokka current 39 2020316-sc-2013-11-05T12:11:15Z-1750667 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDVC01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644678 species_match 98.75 SAMEA2239012 7 Streptococcus pneumoniae 89.34 Streptococcus pneumoniae 1313 PRJEB4909 10 current na 113037 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2043 Streptococcus pneumoniae Streptococcus pneumoniae ERS367824 SC 2006/2012 v1.2.4 2014-05-07T08:35:14.153 98.37 2073867 89.34 1313 2089 2024-02-06T05:13:18.000 2076468 72105 2073867 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900020165.1 type CSF 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 15.1783 https://www.ncbi.nlm.nih.gov/nuccore/FCQN00000000.1 2014-03-18T09:35:29Z GCA_900020165.1 haploid public 982315-sc-2013-11-05T12:06:28Z-1750378 88.53 0.31 46 2015-08-10T19:24:37 GCA_001679515.1 821351 46 11861_4#66 982315-sc-2013-11-05T12:06:28Z-1750378 Netherlands 11861_4#66 SAMEA2239012 1313 GCF_900020165.1 Generic.1.0 88.53 SRA GCF_900020165.1 category_na live 2018-03-09T10:28:41Z 2842STDY5644389 PRJEB4909 GCF_900020165.1-RS_2025_09_21 SC SC 36 1750378 2018-03-09T10:28:41Z 2014-03-18T00:00:00.000 982315 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCQN01 2006/2012 2842STDY5644389 2014-03-18T09:35:29Z Prokka current 36 982315-sc-2013-11-05T12:06:28Z-1750378 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCQN01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644389 species_match 98.73 SAMEA2239012 7 Streptococcus pneumoniae 89.34 Streptococcus pneumoniae 1313 PRJEB4909 10 current na Best-placed reference protein set; GeneMarkS-2+ 113037 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1939 Streptococcus pneumoniae Streptococcus pneumoniae ERS367824 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:14.153 98.37 2073867 89.34 1313 2176 2024-02-06T05:13:18.000 2076468 72105 2073867 CSF Homo sapiens Streptococcus pneumoniae Disease 185 EBI 100 GCA_001679515.1 GCF_900020165.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900020165.1 type CSF 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 15.1783 https://www.ncbi.nlm.nih.gov/nuccore/FCQN00000000.1 2014-03-18T09:35:29Z GCF_900020165.1 haploid public 982315-sc-2013-11-05T12:06:28Z-1750378 88.53 0.31 46 2015-08-10T19:24:37 GCA_001679515.1 821351 52 11861_4#66 982315-sc-2013-11-05T12:06:28Z-1750378 Netherlands 11861_4#66 SAMEA2239012 1313 GCA_900020165.1 Generic.1.0 88.53 SRA GCA_900020165.1 category_na live 2018-03-09T10:28:41Z 2842STDY5644389 PRJEB4909 Annotation submitted by SC SC SC 36 1750378 2018-03-09T10:28:41Z 2014-03-18T00:00:00.000 982315 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCQN01 2006/2012 2842STDY5644389 6.10 2014-03-18T09:35:29Z Prokka current 36 982315-sc-2013-11-05T12:06:28Z-1750378 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCQN01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644389 species_match 98.73 SAMEA1024581 11 Streptococcus pneumoniae 91.76 Streptococcus pneumoniae 1313 PRJEB2393 11 current na 68767 type Streptococcus pneumoniae 2015-07-09 6A 6A species Homo sapiens 2046 Streptococcus pneumoniae Streptococcus pneumoniae ERS020432 SC 2008-10-20 v1.2.4 2012-01-20T19:52:36.866 98.22 2075163 91.76 1313 2087 2024-02-06T09:04:36.000 2075174 68767 2075140 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001110825.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 12.3552 https://www.ncbi.nlm.nih.gov/nuccore/CIMI00000000.1 2011-10-25T09:28:12Z GCA_001110825.1 haploid public SMRU922-sc-2011-01-27-1061135 86.77 0.36 82 2015-07-28T08:10:56 GCA_053203845.1 823368 41 6680_5#10 SMRU922-sc-2011-01-27-1061135 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024581 1313 GCF_001110825.1 Generic.1.0 86.77 SRA GCF_001110825.1 category_na live 2018-03-09T12:17:20Z SMRU922 PRJEB2393 GCF_001110825.1-RS_2026_01_22 SC SC 81 2018-03-09T12:17:20Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIMI01 2008-10-20 SMRU922 2011-10-25T09:28:12Z Prokka current 81 SMRU922-sc-2011-01-27-1061135 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CIMI01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-09 SMRU922 species_match 98.74 SAMEA1024581 11 Streptococcus pneumoniae 91.76 Streptococcus pneumoniae 1313 PRJEB2393 11 current na Best-placed reference protein set; GeneMarkS-2+ 68767 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 6A 6A species Homo sapiens 1991 Streptococcus pneumoniae Streptococcus pneumoniae ERS020432 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-10-20 v1.2.4 2012-01-20T19:52:36.866 98.22 2075163 91.76 1313 2210 2024-02-06T09:04:36.000 2075174 68767 2075140 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 176 EBI 100 GCA_053203845.1 GCF_001110825.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_001110825.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 12.3552 https://www.ncbi.nlm.nih.gov/nuccore/CIMI00000000.1 2011-10-25T09:28:12Z GCF_001110825.1 haploid public SMRU922-sc-2011-01-27-1061135 86.77 0.36 82 2015-07-28T08:10:56 GCA_053203845.1 823368 43 6680_5#10 SMRU922-sc-2011-01-27-1061135 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024581 1313 GCA_001110825.1 Generic.1.0 86.77 SRA GCA_001110825.1 category_na live 2018-03-09T12:17:20Z SMRU922 PRJEB2393 Annotation submitted by SC SC SC 81 2018-03-09T12:17:20Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CIMI01 2008-10-20 SMRU922 6.10 2011-10-25T09:28:12Z Prokka current 81 SMRU922-sc-2011-01-27-1061135 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CIMI01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-09 SMRU922 species_match 98.74 SAMEA1028644 12 Streptococcus pneumoniae 90.17 Streptococcus pneumoniae 1313 PRJEB2479 12 current na 64267 type Streptococcus pneumoniae 2015-07-13 6A 6A species Homo sapiens 2028 Streptococcus pneumoniae Streptococcus pneumoniae ERS022016 SC 2010-03-12 v1.2.4 2012-01-20T20:10:37.356 99.31 2090822 90.17 1313 2069 2024-02-05T16:16:45.000 2090822 64267 2090806 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001164785.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLIN00000000.1 2012-01-05T09:56:37Z GCA_001164785.1 haploid public SMRU2506-sc-2011-01-27-1062719 85.91 0.73 53 2015-07-28T08:12:35 GCA_053203845.1 826370 41 6925_7#10 SMRU2506-sc-2011-01-27-1062719 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028644 1313 GCF_001164785.1 Generic.1.0 85.91 SRA GCF_001164785.1 category_na live 2018-03-09T09:52:54Z SMRU2506 PRJEB2479 GCF_001164785.1-RS_2026_01_18 SC SC 53 2018-03-09T09:52:54Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLIN01 2010-03-12 SMRU2506 2012-01-05T09:56:37Z Prokka current 53 SMRU2506-sc-2011-01-27-1062719 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLIN01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2506 species_match 98.76 SAMEA1028644 12 Streptococcus pneumoniae 90.17 Streptococcus pneumoniae 1313 PRJEB2479 12 current na Best-placed reference protein set; GeneMarkS-2+ 64267 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 6A 6A species Homo sapiens 1965 Streptococcus pneumoniae Streptococcus pneumoniae ERS022016 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-03-12 v1.2.4 2012-01-20T20:10:37.356 99.31 2090822 90.17 1313 2169 2024-02-05T16:16:45.000 2090822 64267 2090806 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 162 EBI 100 GCA_053203845.1 GCF_001164785.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001164785.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CLIN00000000.1 2012-01-05T09:56:37Z GCF_001164785.1 haploid public SMRU2506-sc-2011-01-27-1062719 85.91 0.73 53 2015-07-28T08:12:35 GCA_053203845.1 826370 42 6925_7#10 SMRU2506-sc-2011-01-27-1062719 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028644 1313 GCA_001164785.1 Generic.1.0 85.91 SRA GCA_001164785.1 category_na live 2018-03-09T09:52:54Z SMRU2506 PRJEB2479 Annotation submitted by SC SC SC 53 2018-03-09T09:52:54Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLIN01 2010-03-12 SMRU2506 6.10 2012-01-05T09:56:37Z Prokka current 53 SMRU2506-sc-2011-01-27-1062719 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLIN01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2506 species_match 98.76 SAMEA1026575 11 Streptococcus pneumoniae 88.2 Streptococcus pneumoniae 1313 PRJEB2417 11 current na 61865 type Streptococcus pneumoniae 2017-06-28 6B 6B species Homo sapiens 2058 Streptococcus pneumoniae ERS023013 SC 2006-11-29 v1.2.4 2011-09-13T21:53:36.820 97.55 2085424 88.2 1313 2090 2017-06-24T15:26:54.000 2085424 61865 2085422 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900188955.1 type Nasophaynx 98.7 OK 39.5 Streptococcus pneumoniae 4.42993 https://www.ncbi.nlm.nih.gov/nuccore/FYGC00000000.1 2011-09-06 GCA_900188955.1 haploid ERS023013 87.89 0.36 58 2017-06-28T08:05:57 GCA_001679515.1 825594 32 6470_3#8 United Kingdom UoS0038-sc-2011-02-14-1078068; 6470_38 1313 GCF_900188955.1 Generic.1.0 87.89 SRA Sample Description GCF_900188955.1 category_na live 2013-11-04 UoS0038 PRJEB2417 GCF_900188955.1-RS_2025_09_04 SC 58 1078068 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYGC01 2006-11-29 UoS0038 Prokka current 58 ERS023013 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYGC01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-28 UoS0038 species_match 98.7 SAMEA1026575 11 Streptococcus pneumoniae 88.2 Streptococcus pneumoniae 1313 PRJEB2417 11 current na Best-placed reference protein set; GeneMarkS-2+ 61865 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 6B 6B species Homo sapiens 1951 Streptococcus pneumoniae ERS023013 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006-11-29 v1.2.4 2011-09-13T21:53:36.820 97.55 2085424 88.2 1313 2154 2017-06-24T15:26:54.000 2085424 61865 2085422 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 168 EBI 100 GCA_001679515.1 GCF_900188955.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900188955.1 type Nasophaynx 98.7 OK 39.5 Streptococcus pneumoniae 4.42993 https://www.ncbi.nlm.nih.gov/nuccore/FYGC00000000.1 2011-09-06 GCF_900188955.1 haploid ERS023013 87.89 0.36 58 2017-06-28T08:05:57 GCA_001679515.1 825594 35 6470_3#8 United Kingdom UoS0038-sc-2011-02-14-1078068; 6470_38 1313 GCA_900188955.1 Generic.1.0 87.89 SRA Sample Description GCA_900188955.1 category_na live 2013-11-04 UoS0038 PRJEB2417 Annotation submitted by SC SC 58 1078068 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYGC01 2006-11-29 UoS0038 6.10 Prokka current 58 ERS023013 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYGC01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-28 UoS0038 species_match 98.7 SAMEA1024713 9 Streptococcus pneumoniae 92.4 Streptococcus pneumoniae 1313 PRJEB2393 10 current na 63695 type Streptococcus pneumoniae 2015-07-17 6A 6A species Homo sapiens 2050 Streptococcus pneumoniae Streptococcus pneumoniae ERS020573 SC 2008-12-19 v1.2.4 2012-01-20T19:54:10.000 98.78 2055757 92.4 1313 2088 2024-02-05T16:31:35.000 2055899 61681 2055751 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001163045.1 type nasopharynx 98.69 OK 39.5 Streptococcus pneumoniae 31.4577 https://www.ncbi.nlm.nih.gov/nuccore/CRDX00000000.1 2011-11-02T10:11:58Z GCA_001163045.1 haploid public SMRU1063-sc-2011-01-27-1061276 86.57 0.31 77 2015-07-28T08:11:12 GCA_053203845.1 816935 38 6731_4#7 SMRU1063-sc-2011-01-27-1061276 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024713 1313 GCF_001163045.1 Generic.1.0 86.57 SRA GCF_001163045.1 category_na live 2018-03-09T09:53:06Z SMRU1063 PRJEB2393 GCF_001163045.1-RS_2026_01_25 SC SC 72 2018-03-09T09:53:06Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRDX01 2008-12-19 SMRU1063 2011-11-02T10:11:58Z Prokka current 72 SMRU1063-sc-2011-01-27-1061276 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRDX01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1063 species_match 98.69 SAMEA1024713 9 Streptococcus pneumoniae 92.4 Streptococcus pneumoniae 1313 PRJEB2393 10 current na Best-placed reference protein set; GeneMarkS-2+ 63695 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 6A 6A species Homo sapiens 1934 Streptococcus pneumoniae Streptococcus pneumoniae ERS020573 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-12-19 v1.2.4 2012-01-20T19:54:10.000 98.78 2055757 92.4 1313 2152 2024-02-05T16:31:35.000 2055899 61681 2055751 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 178 EBI 100 GCA_053203845.1 GCF_001163045.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001163045.1 type nasopharynx 98.69 OK 39.5 Streptococcus pneumoniae 31.4577 https://www.ncbi.nlm.nih.gov/nuccore/CRDX00000000.1 2011-11-02T10:11:58Z GCF_001163045.1 haploid public SMRU1063-sc-2011-01-27-1061276 86.57 0.31 77 2015-07-28T08:11:12 GCA_053203845.1 816935 40 6731_4#7 SMRU1063-sc-2011-01-27-1061276 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024713 1313 GCA_001163045.1 Generic.1.0 86.57 SRA GCA_001163045.1 category_na live 2018-03-09T09:53:06Z SMRU1063 PRJEB2393 Annotation submitted by SC SC SC 72 2018-03-09T09:53:06Z 2011-11-02T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRDX01 2008-12-19 SMRU1063 6.10 2011-11-02T10:11:58Z Prokka current 72 SMRU1063-sc-2011-01-27-1061276 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRDX01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1063 species_match 98.69 SAMEA2144032 4 Streptococcus pneumoniae 89.27 Streptococcus pneumoniae 1313 PRJEB4477 4 current na 155748 type Streptococcus pneumoniae 2016-02-12 6 6 species Homo sapiens 2056 Streptococcus pneumoniae Streptococcus pneumoniae ERS324929 SC 2012 v1.2.4 2013-11-26T08:06:44.480 98.19 2074704 89.27 1313 2102 2024-02-06T03:06:21.000 2074704 155748 2074698 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900059885.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FIDP00000000.1 2013-11-25T10:18:09Z GCA_900059885.1 haploid public 368_178_29_10_2012-sc-2013-07-15T10:29:09Z-1658694 88.5 0.31 27 2016-02-09T08:05:55 GCA_001679515.1 821906 46 10702_5#51 368_178_29_10_2012-sc-2013-07-15T10:29:09Z-1658694 United Kingdom: England 10702_5#51 SAMEA2144032 1313 GCF_900059885.1 Generic.1.0 88.5 SRA GCF_900059885.1 category_na live 2018-03-09T10:18:30Z 2690STDY5561833 PRJEB4477 GCF_900059885.1-RS_2025_12_30 SC SC 27 1658694 2018-03-09T10:18:30Z 2013-11-25T00:00:00.000 Box3B5 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIDP01 2012 2690STDY5561833 2013-11-25T10:18:09Z Prokka current 27 368_178_29_10_2012-sc-2013-07-15T10:29:09Z-1658694 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FIDP01 Contig SOURCE_DATABASE_GENBANK United Kingdom: England 2016-02-12 2690STDY5561833 species_match 98.73 SAMEA2144032 4 Streptococcus pneumoniae 89.27 Streptococcus pneumoniae 1313 PRJEB4477 4 current na Best-placed reference protein set; GeneMarkS-2+ 155748 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-30 6 6 species Homo sapiens 1929 Streptococcus pneumoniae Streptococcus pneumoniae ERS324929 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2013-11-26T08:06:44.480 98.19 2074704 89.27 1313 2147 2024-02-06T03:06:21.000 2074704 155748 2074698 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 165 EBI 100 GCA_001679515.1 GCF_900059885.1-RS_2025_12_30 SLX Streptococcus pneumoniae GCF_900059885.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FIDP00000000.1 2013-11-25T10:18:09Z GCF_900059885.1 haploid public 368_178_29_10_2012-sc-2013-07-15T10:29:09Z-1658694 88.5 0.31 27 2016-02-09T08:05:55 GCA_001679515.1 821906 53 10702_5#51 368_178_29_10_2012-sc-2013-07-15T10:29:09Z-1658694 United Kingdom: England 10702_5#51 SAMEA2144032 1313 GCA_900059885.1 Generic.1.0 88.5 SRA GCA_900059885.1 category_na live 2018-03-09T10:18:30Z 2690STDY5561833 PRJEB4477 Annotation submitted by SC SC SC 27 1658694 2018-03-09T10:18:30Z 2013-11-25T00:00:00.000 Box3B5 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIDP01 2012 2690STDY5561833 6.10 2013-11-25T10:18:09Z Prokka current 27 368_178_29_10_2012-sc-2013-07-15T10:29:09Z-1658694 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FIDP01 Contig SOURCE_DATABASE_REFSEQ United Kingdom: England 2016-02-12 2690STDY5561833 species_match 98.73 SAMEA2156333 4 Streptococcus pneumoniae 89.26 Streptococcus pneumoniae 1313 PRJEB4477 4 current na 132417 type Streptococcus pneumoniae 2016-02-12 6 6 species Homo sapiens 2056 Streptococcus pneumoniae Streptococcus pneumoniae ERS324926 SC 2012 v1.2.4 2013-11-19T19:42:01.736 98.19 2076188 89.26 1313 2102 2024-02-06T03:06:41.000 2076188 132417 2076188 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900065195.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FHZH00000000.1 2013-11-18T09:24:43Z GCA_900065195.1 haploid public 368_178_29_10_2012-sc-2013-07-15T10:29:06Z-1658691 88.55 0.31 29 2016-02-09T08:05:46 GCA_001679515.1 822480 46 10678_7#21 368_178_29_10_2012-sc-2013-07-15T10:29:06Z-1658691 United Kingdom: England 10678_7#21 SAMEA2156333 1313 GCF_900065195.1 Generic.1.0 88.55 SRA GCF_900065195.1 category_na live 2018-03-09T10:18:30Z 2690STDY5561830 PRJEB4477 GCF_900065195.1-RS_2025_12_31 SC SC 29 1658691 2018-03-09T10:18:30Z 2013-11-18T00:00:00.000 Box3B2 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHZH01 2012 2690STDY5561830 2013-11-18T09:24:43Z Prokka current 29 368_178_29_10_2012-sc-2013-07-15T10:29:06Z-1658691 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FHZH01 Contig SOURCE_DATABASE_GENBANK United Kingdom: England 2016-02-12 2690STDY5561830 species_match 98.73 SAMEA2156333 4 Streptococcus pneumoniae 89.26 Streptococcus pneumoniae 1313 PRJEB4477 4 current na Best-placed reference protein set; GeneMarkS-2+ 132417 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-31 6 6 species Homo sapiens 1939 Streptococcus pneumoniae Streptococcus pneumoniae ERS324926 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2013-11-19T19:42:01.736 98.19 2076188 89.26 1313 2159 2024-02-06T03:06:41.000 2076188 132417 2076188 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 167 EBI 100 GCA_001679515.1 GCF_900065195.1-RS_2025_12_31 SLX Streptococcus pneumoniae GCF_900065195.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FHZH00000000.1 2013-11-18T09:24:43Z GCF_900065195.1 haploid public 368_178_29_10_2012-sc-2013-07-15T10:29:06Z-1658691 88.55 0.31 29 2016-02-09T08:05:46 GCA_001679515.1 822480 53 10678_7#21 368_178_29_10_2012-sc-2013-07-15T10:29:06Z-1658691 United Kingdom: England 10678_7#21 SAMEA2156333 1313 GCA_900065195.1 Generic.1.0 88.55 SRA GCA_900065195.1 category_na live 2018-03-09T10:18:30Z 2690STDY5561830 PRJEB4477 Annotation submitted by SC SC SC 29 1658691 2018-03-09T10:18:30Z 2013-11-18T00:00:00.000 Box3B2 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHZH01 2012 2690STDY5561830 6.10 2013-11-18T09:24:43Z Prokka current 29 368_178_29_10_2012-sc-2013-07-15T10:29:06Z-1658691 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FHZH01 Contig SOURCE_DATABASE_REFSEQ United Kingdom: England 2016-02-12 2690STDY5561830 species_match 98.73 SAMEA2150838 5 Streptococcus pneumoniae 89.21 Streptococcus pneumoniae 1313 PRJEB4477 5 current na 131418 type Streptococcus pneumoniae 2016-02-12 6 6 species Homo sapiens 2053 Streptococcus pneumoniae Streptococcus pneumoniae ERS324855 SC 2012 v1.2.4 2013-11-26T08:06:43.630 98.19 2077031 89.21 1313 2099 2024-02-06T03:09:13.000 2077042 131418 2077030 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900061305.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FIDC00000000.1 2013-11-25T10:18:09Z GCA_900061305.1 haploid public 368_178_8_10_2012-sc-2013-07-15T10:27:59Z-1658620 88.54 0.31 33 2016-02-09T08:05:54 GCA_001679515.1 822700 46 10702_5#38 368_178_8_10_2012-sc-2013-07-15T10:27:59Z-1658620 United Kingdom: England 10702_5#38 SAMEA2150838 1313 GCF_900061305.1 Generic.1.0 88.54 SRA GCF_900061305.1 category_na live 2018-03-09T10:18:46Z 2690STDY5561759 PRJEB4477 GCF_900061305.1-RS_2026_01_22 SC SC 32 1658620 2018-03-09T10:18:46Z 2013-11-25T00:00:00.000 Box2C2 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIDC01 2012 2690STDY5561759 2013-11-25T10:18:09Z Prokka current 32 368_178_8_10_2012-sc-2013-07-15T10:27:59Z-1658620 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FIDC01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom: England 2016-02-12 2690STDY5561759 species_match 98.73 SAMEA2150838 5 Streptococcus pneumoniae 89.21 Streptococcus pneumoniae 1313 PRJEB4477 5 current na Best-placed reference protein set; GeneMarkS-2+ 131418 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 6 6 species Homo sapiens 1937 Streptococcus pneumoniae Streptococcus pneumoniae ERS324855 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2013-11-26T08:06:43.630 98.19 2077031 89.21 1313 2160 2024-02-06T03:09:13.000 2077042 131418 2077030 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 170 EBI 100 GCA_001679515.1 GCF_900061305.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_900061305.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FIDC00000000.1 2013-11-25T10:18:09Z GCF_900061305.1 haploid public 368_178_8_10_2012-sc-2013-07-15T10:27:59Z-1658620 88.54 0.31 33 2016-02-09T08:05:54 GCA_001679515.1 822700 53 10702_5#38 368_178_8_10_2012-sc-2013-07-15T10:27:59Z-1658620 United Kingdom: England 10702_5#38 SAMEA2150838 1313 GCA_900061305.1 Generic.1.0 88.54 SRA GCA_900061305.1 category_na live 2018-03-09T10:18:46Z 2690STDY5561759 PRJEB4477 Annotation submitted by SC SC SC 32 1658620 2018-03-09T10:18:46Z 2013-11-25T00:00:00.000 Box2C2 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIDC01 2012 2690STDY5561759 6.10 2013-11-25T10:18:09Z Prokka current 32 368_178_8_10_2012-sc-2013-07-15T10:27:59Z-1658620 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FIDC01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom: England 2016-02-12 2690STDY5561759 species_match 98.73 SAMEA1965930 5 Streptococcus pneumoniae 89.21 Streptococcus pneumoniae 1313 PRJEB4477 5 current na 131241 type Streptococcus pneumoniae 2016-02-12 6 6 species Homo sapiens 2055 Streptococcus pneumoniae Streptococcus pneumoniae ERS324868 SC 2012 v1.2.4 2013-11-19T19:41:56.456 98.19 2075818 89.21 1313 2101 2024-02-06T03:06:52.000 2075818 131241 2075818 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900061885.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FIBG00000000.1 2013-11-18T17:01:14Z GCA_900061885.1 haploid public 362_172_17_10_2012-sc-2013-07-15T10:28:12Z-1658633 88.49 0.31 34 2016-02-09T08:05:45 GCA_001679515.1 822320 46 10678_7#69 362_172_17_10_2012-sc-2013-07-15T10:28:12Z-1658633 United Kingdom: England 10678_7#69 SAMEA1965930 1313 GCF_900061885.1 Generic.1.0 88.49 SRA GCF_900061885.1 category_na live 2018-03-09T10:18:31Z 2690STDY5561772 PRJEB4477 GCF_900061885.1-RS_2026_01_24 SC SC 34 1658633 2018-03-09T10:18:31Z 2013-11-18T00:00:00.000 Box2D6 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIBG01 2012 2690STDY5561772 2013-11-18T17:01:14Z Prokka current 34 362_172_17_10_2012-sc-2013-07-15T10:28:12Z-1658633 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FIBG01 Contig SOURCE_DATABASE_GENBANK United Kingdom: England 2016-02-12 2690STDY5561772 species_match 98.73 SAMEA1965930 5 Streptococcus pneumoniae 89.21 Streptococcus pneumoniae 1313 PRJEB4477 5 current na Best-placed reference protein set; GeneMarkS-2+ 131241 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 6 6 species Homo sapiens 1938 Streptococcus pneumoniae Streptococcus pneumoniae ERS324868 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2013-11-19T19:41:56.456 98.19 2075818 89.21 1313 2165 2024-02-06T03:06:52.000 2075818 131241 2075818 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 174 EBI 100 GCA_001679515.1 GCF_900061885.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_900061885.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FIBG00000000.1 2013-11-18T17:01:14Z GCF_900061885.1 haploid public 362_172_17_10_2012-sc-2013-07-15T10:28:12Z-1658633 88.49 0.31 34 2016-02-09T08:05:45 GCA_001679515.1 822320 53 10678_7#69 362_172_17_10_2012-sc-2013-07-15T10:28:12Z-1658633 United Kingdom: England 10678_7#69 SAMEA1965930 1313 GCA_900061885.1 Generic.1.0 88.49 SRA GCA_900061885.1 category_na live 2018-03-09T10:18:31Z 2690STDY5561772 PRJEB4477 Annotation submitted by SC SC SC 34 1658633 2018-03-09T10:18:31Z 2013-11-18T00:00:00.000 Box2D6 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIBG01 2012 2690STDY5561772 6.10 2013-11-18T17:01:14Z Prokka current 34 362_172_17_10_2012-sc-2013-07-15T10:28:12Z-1658633 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FIBG01 Contig SOURCE_DATABASE_REFSEQ United Kingdom: England 2016-02-12 2690STDY5561772 species_match 98.73 SAMEA2144832 5 Streptococcus pneumoniae 90.01 Streptococcus pneumoniae 1313 PRJEB4477 5 current na 131171 type Streptococcus pneumoniae 2016-02-12 6 6 species Homo sapiens 2052 Streptococcus pneumoniae Streptococcus pneumoniae ERS324974 SC 2012 v1.2.4 2013-11-19T19:42:06.013 98.19 2075170 90.01 1313 2100 2024-02-06T03:06:23.000 2075170 131171 2075168 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900060305.1 type nasopharynx 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FHYL00000000.1 2013-11-18T17:01:14Z GCA_900060305.1 haploid public 380_191_6_11_2012-sc-2013-07-15T10:29:51Z-1658740 88.48 0.31 30 2016-02-09T08:05:48 GCA_001457635.1 822023 48 10678_6#72 380_191_6_11_2012-sc-2013-07-15T10:29:51Z-1658740 United Kingdom: England 10678_6#72 SAMEA2144832 1313 GCF_900060305.1 Generic.1.0 88.48 SRA GCF_900060305.1 category_na live 2018-03-09T10:18:30Z 2690STDY5561879 PRJEB4477 GCF_900060305.1-RS_2025_12_31 SC SC 30 1658740 2018-03-09T10:18:30Z 2013-11-18T00:00:00.000 Box3G5 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHYL01 2012 2690STDY5561879 2013-11-18T17:01:14Z Prokka current 30 380_191_6_11_2012-sc-2013-07-15T10:29:51Z-1658740 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FHYL01 Contig SOURCE_DATABASE_GENBANK United Kingdom: England 2016-02-12 2690STDY5561879 species_match 98.7 SAMEA2144832 5 Streptococcus pneumoniae 90.01 Streptococcus pneumoniae 1313 PRJEB4477 5 current na Best-placed reference protein set; GeneMarkS-2+ 131171 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-31 6 6 species Homo sapiens 1937 Streptococcus pneumoniae Streptococcus pneumoniae ERS324974 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2013-11-19T19:42:06.013 98.19 2075170 90.01 1313 2160 2024-02-06T03:06:23.000 2075170 131171 2075168 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 168 EBI 100 GCA_001457635.1 GCF_900060305.1-RS_2025_12_31 SLX Streptococcus pneumoniae GCF_900060305.1 type nasopharynx 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FHYL00000000.1 2013-11-18T17:01:14Z GCF_900060305.1 haploid public 380_191_6_11_2012-sc-2013-07-15T10:29:51Z-1658740 88.48 0.31 30 2016-02-09T08:05:48 GCA_001457635.1 822023 55 10678_6#72 380_191_6_11_2012-sc-2013-07-15T10:29:51Z-1658740 United Kingdom: England 10678_6#72 SAMEA2144832 1313 GCA_900060305.1 Generic.1.0 88.48 SRA GCA_900060305.1 category_na live 2018-03-09T10:18:30Z 2690STDY5561879 PRJEB4477 Annotation submitted by SC SC SC 30 1658740 2018-03-09T10:18:30Z 2013-11-18T00:00:00.000 Box3G5 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHYL01 2012 2690STDY5561879 6.10 2013-11-18T17:01:14Z Prokka current 30 380_191_6_11_2012-sc-2013-07-15T10:29:51Z-1658740 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FHYL01 Contig SOURCE_DATABASE_REFSEQ United Kingdom: England 2016-02-12 2690STDY5561879 species_match 98.7 SAMEA2163206 5 Streptococcus pneumoniae 89.21 Streptococcus pneumoniae 1313 PRJEB4477 5 current na 131152 type Streptococcus pneumoniae 2016-02-12 6 6 species Homo sapiens 2053 Streptococcus pneumoniae Streptococcus pneumoniae ERS324874 SC 2012 v1.2.4 2013-11-19T19:41:57.006 98.19 2075250 89.21 1313 2100 2024-02-06T03:07:48.000 2075250 131152 2075250 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900053585.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FIBS00000000.1 2013-11-18T17:01:14Z GCA_900053585.1 haploid public 362_172_17_10_2012-sc-2013-07-15T10:28:17Z-1658639 88.46 0.31 32 2016-02-09T08:05:45 GCA_001679515.1 822108 47 10678_7#80 362_172_17_10_2012-sc-2013-07-15T10:28:17Z-1658639 United Kingdom: England 10678_7#80 SAMEA2163206 1313 GCF_900053585.1 Generic.1.0 88.46 SRA GCF_900053585.1 category_na live 2018-03-09T10:18:38Z 2690STDY5561778 PRJEB4477 GCF_900053585.1-RS_2026_01_24 SC SC 32 1658639 2018-03-09T10:18:38Z 2013-11-18T00:00:00.000 Box2E3 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIBS01 2012 2690STDY5561778 2013-11-18T17:01:14Z Prokka current 32 362_172_17_10_2012-sc-2013-07-15T10:28:17Z-1658639 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FIBS01 Contig SOURCE_DATABASE_GENBANK United Kingdom: England 2016-02-12 2690STDY5561778 species_match 98.73 SAMEA2163206 5 Streptococcus pneumoniae 89.21 Streptococcus pneumoniae 1313 PRJEB4477 5 current na Best-placed reference protein set; GeneMarkS-2+ 131152 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 6 6 species Homo sapiens 1935 Streptococcus pneumoniae Streptococcus pneumoniae ERS324874 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2013-11-19T19:41:57.006 98.19 2075250 89.21 1313 2163 2024-02-06T03:07:48.000 2075250 131152 2075250 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 174 EBI 100 GCA_001679515.1 GCF_900053585.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_900053585.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FIBS00000000.1 2013-11-18T17:01:14Z GCF_900053585.1 haploid public 362_172_17_10_2012-sc-2013-07-15T10:28:17Z-1658639 88.46 0.31 32 2016-02-09T08:05:45 GCA_001679515.1 822108 54 10678_7#80 362_172_17_10_2012-sc-2013-07-15T10:28:17Z-1658639 United Kingdom: England 10678_7#80 SAMEA2163206 1313 GCA_900053585.1 Generic.1.0 88.46 SRA GCA_900053585.1 category_na live 2018-03-09T10:18:38Z 2690STDY5561778 PRJEB4477 Annotation submitted by SC SC SC 32 1658639 2018-03-09T10:18:38Z 2013-11-18T00:00:00.000 Box2E3 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIBS01 2012 2690STDY5561778 6.10 2013-11-18T17:01:14Z Prokka current 32 362_172_17_10_2012-sc-2013-07-15T10:28:17Z-1658639 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FIBS01 Contig SOURCE_DATABASE_REFSEQ United Kingdom: England 2016-02-12 2690STDY5561778 species_match 98.73 SAMEA2157572 5 Streptococcus pneumoniae 89.14 Streptococcus pneumoniae 1313 PRJEB4477 5 current na 131077 type Streptococcus pneumoniae 2016-02-12 6 6 species Homo sapiens 2054 Streptococcus pneumoniae Streptococcus pneumoniae ERS325003 SC 2012 v1.2.4 2013-11-19T19:42:09.480 98.19 2076703 89.14 1313 2101 2024-02-06T03:10:05.000 2076703 131077 2076702 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900061275.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FHXN00000000.1 2013-11-18T17:01:14Z GCA_900061275.1 haploid public 384_196_6_11_2012-sc-2013-07-15T10:30:16Z-1658769 88.45 0.31 31 2016-02-09T08:05:50 GCA_001679515.1 822635 47 10678_6#44 384_196_6_11_2012-sc-2013-07-15T10:30:16Z-1658769 United Kingdom: England 10678_6#44 SAMEA2157572 1313 GCF_900061275.1 Generic.1.0 88.45 SRA GCF_900061275.1 category_na live 2018-03-09T10:18:43Z 2690STDY5561908 PRJEB4477 GCF_900061275.1-RS_2025_08_30 SC SC 31 1658769 2018-03-09T10:18:43Z 2013-11-18T00:00:00.000 Box4A9 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHXN01 2012 2690STDY5561908 2013-11-18T17:01:14Z Prokka current 31 384_196_6_11_2012-sc-2013-07-15T10:30:16Z-1658769 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FHXN01 Contig SOURCE_DATABASE_GENBANK United Kingdom: England 2016-02-12 2690STDY5561908 species_match 98.73 SAMEA2157572 5 Streptococcus pneumoniae 89.14 Streptococcus pneumoniae 1313 PRJEB4477 5 current na Best-placed reference protein set; GeneMarkS-2+ 131077 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-08-30 6 6 species Homo sapiens 1939 Streptococcus pneumoniae Streptococcus pneumoniae ERS325003 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2013-11-19T19:42:09.480 98.19 2076703 89.14 1313 2161 2024-02-06T03:10:05.000 2076703 131077 2076702 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 168 EBI 100 GCA_001679515.1 GCF_900061275.1-RS_2025_08_30 SLX Streptococcus pneumoniae GCF_900061275.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FHXN00000000.1 2013-11-18T17:01:14Z GCF_900061275.1 haploid public 384_196_6_11_2012-sc-2013-07-15T10:30:16Z-1658769 88.45 0.31 31 2016-02-09T08:05:50 GCA_001679515.1 822635 54 10678_6#44 384_196_6_11_2012-sc-2013-07-15T10:30:16Z-1658769 United Kingdom: England 10678_6#44 SAMEA2157572 1313 GCA_900061275.1 Generic.1.0 88.45 SRA GCA_900061275.1 category_na live 2018-03-09T10:18:43Z 2690STDY5561908 PRJEB4477 Annotation submitted by SC SC SC 31 1658769 2018-03-09T10:18:43Z 2013-11-18T00:00:00.000 Box4A9 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHXN01 2012 2690STDY5561908 6.10 2013-11-18T17:01:14Z Prokka current 31 384_196_6_11_2012-sc-2013-07-15T10:30:16Z-1658769 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FHXN01 Contig SOURCE_DATABASE_REFSEQ United Kingdom: England 2016-02-12 2690STDY5561908 species_match 98.73 SAMEA2157458 5 Streptococcus pneumoniae 89.28 Streptococcus pneumoniae 1313 PRJEB4477 5 current na 130911 type Streptococcus pneumoniae 2016-02-12 6 6 species Homo sapiens 2054 Streptococcus pneumoniae Streptococcus pneumoniae ERS324922 SC 2012 v1.2.4 2013-11-19T19:42:01.480 98.19 2074294 89.28 1313 2100 2024-02-06T09:23:29.000 2074294 130911 2074294 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900052195.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FIBU00000000.1 2013-11-18T17:01:14Z GCA_900052195.1 haploid public 391_203_24_10_2012-sc-2013-07-15T10:29:03Z-1658687 88.49 0.31 33 2016-02-09T08:05:46 GCA_001679515.1 821758 46 10678_7#85 391_203_24_10_2012-sc-2013-07-15T10:29:03Z-1658687 United Kingdom: England 10678_7#85 SAMEA2157458 1313 GCF_900052195.1 Generic.1.0 88.49 SRA GCF_900052195.1 category_na live 2018-03-09T13:35:51Z 2690STDY5561826 PRJEB4477 GCF_900052195.1-RS_2026_01_21 SC SC 33 1658687 2018-03-09T13:35:51Z 2013-11-18T00:00:00.000 Box3A7 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIBU01 2012 2690STDY5561826 2013-11-18T17:01:14Z Prokka current 33 391_203_24_10_2012-sc-2013-07-15T10:29:03Z-1658687 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FIBU01 Contig SOURCE_DATABASE_GENBANK United Kingdom: England 2016-02-12 2690STDY5561826 species_match 98.73 SAMEA2157458 5 Streptococcus pneumoniae 89.28 Streptococcus pneumoniae 1313 PRJEB4477 5 current na Best-placed reference protein set; GeneMarkS-2+ 130911 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-21 6 6 species Homo sapiens 1941 Streptococcus pneumoniae Streptococcus pneumoniae ERS324922 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2013-11-19T19:42:01.480 98.19 2074294 89.28 1313 2163 2024-02-06T09:23:29.000 2074294 130911 2074294 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 169 EBI 100 GCA_001679515.1 GCF_900052195.1-RS_2026_01_21 SLX Streptococcus pneumoniae GCF_900052195.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FIBU00000000.1 2013-11-18T17:01:14Z GCF_900052195.1 haploid public 391_203_24_10_2012-sc-2013-07-15T10:29:03Z-1658687 88.49 0.31 33 2016-02-09T08:05:46 GCA_001679515.1 821758 53 10678_7#85 391_203_24_10_2012-sc-2013-07-15T10:29:03Z-1658687 United Kingdom: England 10678_7#85 SAMEA2157458 1313 GCA_900052195.1 Generic.1.0 88.49 SRA GCA_900052195.1 category_na live 2018-03-09T13:35:51Z 2690STDY5561826 PRJEB4477 Annotation submitted by SC SC SC 33 1658687 2018-03-09T13:35:51Z 2013-11-18T00:00:00.000 Box3A7 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIBU01 2012 2690STDY5561826 6.10 2013-11-18T17:01:14Z Prokka current 33 391_203_24_10_2012-sc-2013-07-15T10:29:03Z-1658687 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FIBU01 Contig SOURCE_DATABASE_REFSEQ United Kingdom: England 2016-02-12 2690STDY5561826 species_match 98.73 SAMEA2162497 5 Streptococcus pneumoniae 89.21 Streptococcus pneumoniae 1313 PRJEB4477 5 current na 123420 type Streptococcus pneumoniae 2016-02-12 6 6 species Homo sapiens 2056 Streptococcus pneumoniae Streptococcus pneumoniae ERS324940 SC 2012 v1.2.4 2013-11-19T19:42:02.826 98.19 2076063 89.21 1313 2102 2024-02-06T03:10:09.000 2076063 123420 2076063 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900056085.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FHZQ00000000.1 2013-11-18T17:01:14Z GCA_900056085.1 haploid public 380_191_30_10_2012-sc-2013-07-15T10:29:19Z-1658705 88.5 0.31 34 2016-02-09T08:05:47 GCA_001679515.1 822391 46 10678_7#3 380_191_30_10_2012-sc-2013-07-15T10:29:19Z-1658705 United Kingdom: England 10678_7#3 SAMEA2162497 1313 GCF_900056085.1 Generic.1.0 88.5 SRA GCF_900056085.1 category_na live 2018-03-09T10:18:43Z 2690STDY5561844 PRJEB4477 GCF_900056085.1-RS_2026_01_21 SC SC 34 1658705 2018-03-09T10:18:43Z 2013-11-18T00:00:00.000 Box3C7 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHZQ01 2012 2690STDY5561844 2013-11-18T17:01:14Z Prokka current 34 380_191_30_10_2012-sc-2013-07-15T10:29:19Z-1658705 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FHZQ01 Contig SOURCE_DATABASE_GENBANK United Kingdom: England 2016-02-12 2690STDY5561844 species_match 98.73 SAMEA2162497 5 Streptococcus pneumoniae 89.21 Streptococcus pneumoniae 1313 PRJEB4477 5 current na Best-placed reference protein set; GeneMarkS-2+ 123420 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-21 6 6 species Homo sapiens 1937 Streptococcus pneumoniae Streptococcus pneumoniae ERS324940 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2013-11-19T19:42:02.826 98.19 2076063 89.21 1313 2159 2024-02-06T03:10:09.000 2076063 123420 2076063 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 169 EBI 100 GCA_001679515.1 GCF_900056085.1-RS_2026_01_21 SLX Streptococcus pneumoniae GCF_900056085.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FHZQ00000000.1 2013-11-18T17:01:14Z GCF_900056085.1 haploid public 380_191_30_10_2012-sc-2013-07-15T10:29:19Z-1658705 88.5 0.31 34 2016-02-09T08:05:47 GCA_001679515.1 822391 53 10678_7#3 380_191_30_10_2012-sc-2013-07-15T10:29:19Z-1658705 United Kingdom: England 10678_7#3 SAMEA2162497 1313 GCA_900056085.1 Generic.1.0 88.5 SRA GCA_900056085.1 category_na live 2018-03-09T10:18:43Z 2690STDY5561844 PRJEB4477 Annotation submitted by SC SC SC 34 1658705 2018-03-09T10:18:43Z 2013-11-18T00:00:00.000 Box3C7 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHZQ01 2012 2690STDY5561844 6.10 2013-11-18T17:01:14Z Prokka current 34 380_191_30_10_2012-sc-2013-07-15T10:29:19Z-1658705 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FHZQ01 Contig SOURCE_DATABASE_REFSEQ United Kingdom: England 2016-02-12 2690STDY5561844 species_match 98.73 SAMEA2145462 5 Streptococcus pneumoniae 89.26 Streptococcus pneumoniae 1313 PRJEB4477 5 current na 123357 type Streptococcus pneumoniae 2016-02-12 6 6 species Homo sapiens 2054 Streptococcus pneumoniae Streptococcus pneumoniae ERS325004 SC 2012 v1.2.4 2013-11-19T19:42:09.570 98.19 2074669 89.26 1313 2100 2024-02-06T03:07:55.000 2074669 123357 2074668 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900062195.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FHYA00000000.1 2013-11-18T17:01:14Z GCA_900062195.1 haploid public 384_196_6_11_2012-sc-2013-07-15T10:30:18Z-1658770 88.49 0.31 31 2016-02-09T08:05:50 GCA_001679515.1 821818 46 10678_6#59 384_196_6_11_2012-sc-2013-07-15T10:30:18Z-1658770 United Kingdom: England 10678_6#59 SAMEA2145462 1313 GCF_900062195.1 Generic.1.0 88.49 SRA GCF_900062195.1 category_na live 2018-03-09T10:18:35Z 2690STDY5561909 PRJEB4477 GCF_900062195.1-RS_2026_01_01 SC SC 31 1658770 2018-03-09T10:18:35Z 2013-11-18T00:00:00.000 Box4B1 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHYA01 2012 2690STDY5561909 2013-11-18T17:01:14Z Prokka current 31 384_196_6_11_2012-sc-2013-07-15T10:30:18Z-1658770 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FHYA01 Contig SOURCE_DATABASE_GENBANK United Kingdom: England 2016-02-12 2690STDY5561909 species_match 98.73 SAMEA2145462 5 Streptococcus pneumoniae 89.26 Streptococcus pneumoniae 1313 PRJEB4477 5 current na Best-placed reference protein set; GeneMarkS-2+ 123357 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-01 6 6 species Homo sapiens 1931 Streptococcus pneumoniae Streptococcus pneumoniae ERS325004 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2013-11-19T19:42:09.570 98.19 2074669 89.26 1313 2157 2024-02-06T03:07:55.000 2074669 123357 2074668 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 173 EBI 100 GCA_001679515.1 GCF_900062195.1-RS_2026_01_01 SLX Streptococcus pneumoniae GCF_900062195.1 type nasopharynx 98.73 ERC000011 OK 39.5 Streptococcus pneumoniae 10.6459 https://www.ncbi.nlm.nih.gov/nuccore/FHYA00000000.1 2013-11-18T17:01:14Z GCF_900062195.1 haploid public 384_196_6_11_2012-sc-2013-07-15T10:30:18Z-1658770 88.49 0.31 31 2016-02-09T08:05:50 GCA_001679515.1 821818 53 10678_6#59 384_196_6_11_2012-sc-2013-07-15T10:30:18Z-1658770 United Kingdom: England 10678_6#59 SAMEA2145462 1313 GCA_900062195.1 Generic.1.0 88.49 SRA GCA_900062195.1 category_na live 2018-03-09T10:18:35Z 2690STDY5561909 PRJEB4477 Annotation submitted by SC SC SC 31 1658770 2018-03-09T10:18:35Z 2013-11-18T00:00:00.000 Box4B1 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHYA01 2012 2690STDY5561909 6.10 2013-11-18T17:01:14Z Prokka current 31 384_196_6_11_2012-sc-2013-07-15T10:30:18Z-1658770 Generic Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx FHYA01 Contig SOURCE_DATABASE_REFSEQ United Kingdom: England 2016-02-12 2690STDY5561909 species_match 98.73 SAMEA1024803 6 Streptococcus pneumoniae 89.24 Streptococcus pneumoniae 1313 PRJEB2393 6 current na 158757 type Streptococcus pneumoniae 2015-07-11 6B 6B species Homo sapiens 2058 Streptococcus pneumoniae Streptococcus pneumoniae ERS020455 SC 2008-11-12 v1.2.4 2012-01-20T19:52:51.490 99.15 2112558 89.24 1313 2098 2024-02-06T09:04:35.000 2112573 158721 2112533 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001132225.1 type nasopharynx 98.77 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CKQV00000000.1 2011-10-25T09:28:12Z GCA_001132225.1 haploid public SMRU945-sc-2011-01-27-1061158 85.91 0.31 38 2015-07-28T08:10:58 GCA_053203845.1 837907 40 6680_6#9 SMRU945-sc-2011-01-27-1061158 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024803 1313 GCF_001132225.1 Generic.1.0 85.91 SRA GCF_001132225.1 category_na live 2018-03-09T12:17:20Z SMRU945 PRJEB2393 GCF_001132225.1-RS_2026_01_16 SC SC 37 2018-03-09T12:17:20Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKQV01 2008-11-12 SMRU945 2011-10-25T09:28:12Z Prokka current 37 SMRU945-sc-2011-01-27-1061158 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKQV01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU945 species_match 98.77 SAMEA1024803 6 Streptococcus pneumoniae 89.24 Streptococcus pneumoniae 1313 PRJEB2393 6 current na Best-placed reference protein set; GeneMarkS-2+ 158757 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-16 6B 6B species Homo sapiens 1962 Streptococcus pneumoniae Streptococcus pneumoniae ERS020455 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-11-12 v1.2.4 2012-01-20T19:52:51.490 99.15 2112558 89.24 1313 2169 2024-02-06T09:04:35.000 2112573 158721 2112533 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 165 EBI 100 GCA_053203845.1 GCF_001132225.1-RS_2026_01_16 SLX Streptococcus pneumoniae GCF_001132225.1 type nasopharynx 98.77 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CKQV00000000.1 2011-10-25T09:28:12Z GCF_001132225.1 haploid public SMRU945-sc-2011-01-27-1061158 85.91 0.31 38 2015-07-28T08:10:58 GCA_053203845.1 837907 42 6680_6#9 SMRU945-sc-2011-01-27-1061158 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024803 1313 GCA_001132225.1 Generic.1.0 85.91 SRA GCA_001132225.1 category_na live 2018-03-09T12:17:20Z SMRU945 PRJEB2393 Annotation submitted by SC SC SC 37 2018-03-09T12:17:20Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKQV01 2008-11-12 SMRU945 6.10 2011-10-25T09:28:12Z Prokka current 37 SMRU945-sc-2011-01-27-1061158 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKQV01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU945 species_match 98.77 SAMEA1029084 7 Streptococcus pneumoniae 88.14 Streptococcus pneumoniae 1313 PRJEB2479 7 current na 98556 type Streptococcus pneumoniae 2015-07-13 7B 7B species Homo sapiens 2121 Streptococcus pneumoniae Streptococcus pneumoniae ERS022145 SC 2010-04-19 v1.2.4 2012-01-20T20:12:07.230 98.94 2150846 88.14 1313 2159 2024-02-05T16:32:43.000 2150846 98556 2150829 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001110365.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/CLTV00000000.1 2012-01-16T15:10:27Z GCA_001110365.1 haploid public SMRU2635-sc-2011-01-27-1062848 86.39 0.31 56 2015-07-28T08:12:56 GCA_053203845.1 848742 38 6972_5#19 SMRU2635-sc-2011-01-27-1062848 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029084 1313 GCF_001110365.1 Generic.1.0 86.39 SRA GCF_001110365.1 category_na live 2018-03-09T09:53:06Z SMRU2635 PRJEB2479 GCF_001110365.1-RS_2026_01_25 SC SC 56 2018-03-09T09:53:06Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLTV01 2010-04-19 SMRU2635 2012-01-16T15:10:27Z Prokka current 56 SMRU2635-sc-2011-01-27-1062848 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLTV01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2635 species_match 98.8 SAMEA1029084 7 Streptococcus pneumoniae 88.14 Streptococcus pneumoniae 1313 PRJEB2479 7 current na Best-placed reference protein set; GeneMarkS-2+ 98556 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 7B 7B species Homo sapiens 2030 Streptococcus pneumoniae Streptococcus pneumoniae ERS022145 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-04-19 v1.2.4 2012-01-20T20:12:07.230 98.94 2150846 88.14 1313 2251 2024-02-05T16:32:43.000 2150846 98556 2150829 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 181 EBI 100 GCA_053203845.1 GCF_001110365.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_001110365.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/CLTV00000000.1 2012-01-16T15:10:27Z GCF_001110365.1 haploid public SMRU2635-sc-2011-01-27-1062848 86.39 0.31 56 2015-07-28T08:12:56 GCA_053203845.1 848742 40 6972_5#19 SMRU2635-sc-2011-01-27-1062848 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029084 1313 GCA_001110365.1 Generic.1.0 86.39 SRA GCA_001110365.1 category_na live 2018-03-09T09:53:06Z SMRU2635 PRJEB2479 Annotation submitted by SC SC SC 56 2018-03-09T09:53:06Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLTV01 2010-04-19 SMRU2635 6.10 2012-01-16T15:10:27Z Prokka current 56 SMRU2635-sc-2011-01-27-1062848 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLTV01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2635 species_match 98.8 SAMEA1025689 6 Streptococcus pneumoniae 90.23 Streptococcus pneumoniae 1313 PRJEB2397 6 current na 130255 type Streptococcus pneumoniae 2015-07-13 6C 6C species Homo sapiens 2104 Streptococcus pneumoniae Streptococcus pneumoniae ERS021500 SC 2009-10-16 v1.2.4 2012-01-20T20:04:22.156 99.1 2126441 90.23 1313 2147 2024-02-06T09:04:26.000 2126481 95279 2126426 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001106925.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CKXG00000000.1 2011-12-05T16:07:37Z GCA_001106925.1 haploid public SMRU1990-sc-2011-01-27-1062203 87.44 0.31 45 2015-07-28T08:12:12 GCA_053203845.1 840774 43 6823_6#22 SMRU1990-sc-2011-01-27-1062203 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025689 1313 GCF_001106925.1 Generic.1.0 87.44 SRA GCF_001106925.1 category_na live 2018-03-09T12:14:00Z SMRU1990 PRJEB2397 GCF_001106925.1-RS_2026_01_19 SC SC 43 2018-03-09T12:14:00Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKXG01 2009-10-16 SMRU1990 2011-12-05T16:07:37Z Prokka current 43 SMRU1990-sc-2011-01-27-1062203 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKXG01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU1990 species_match 98.76 SAMEA1025689 6 Streptococcus pneumoniae 90.23 Streptococcus pneumoniae 1313 PRJEB2397 6 current na Best-placed reference protein set; GeneMarkS-2+ 130255 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 6C 6C species Homo sapiens 2039 Streptococcus pneumoniae Streptococcus pneumoniae ERS021500 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-10-16 v1.2.4 2012-01-20T20:04:22.156 99.1 2126441 90.23 1313 2248 2024-02-06T09:04:26.000 2126481 95279 2126426 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 164 EBI 100 GCA_053203845.1 GCF_001106925.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001106925.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CKXG00000000.1 2011-12-05T16:07:37Z GCF_001106925.1 haploid public SMRU1990-sc-2011-01-27-1062203 87.44 0.31 45 2015-07-28T08:12:12 GCA_053203845.1 840774 45 6823_6#22 SMRU1990-sc-2011-01-27-1062203 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025689 1313 GCA_001106925.1 Generic.1.0 87.44 SRA GCA_001106925.1 category_na live 2018-03-09T12:14:00Z SMRU1990 PRJEB2397 Annotation submitted by SC SC SC 43 2018-03-09T12:14:00Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKXG01 2009-10-16 SMRU1990 6.10 2011-12-05T16:07:37Z Prokka current 43 SMRU1990-sc-2011-01-27-1062203 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKXG01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU1990 species_match 98.76 SAMEA1024181 7 Streptococcus pneumoniae 91.25 Streptococcus pneumoniae 1313 PRJEB2357 7 current na 94175 type Streptococcus pneumoniae 2015-07-11 6C 6C species Homo sapiens 2120 Streptococcus pneumoniae Streptococcus pneumoniae ERS019348 SC 2008-03-17 v1.2.4 2012-01-20T19:43:06.656 98.97 2110648 91.25 1313 2159 2024-02-06T09:04:05.000 2110648 94175 2110629 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001165425.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 45.4964 https://www.ncbi.nlm.nih.gov/nuccore/CKNB00000000.1 2011-10-18T09:14:37Z GCA_001165425.1 haploid public SMRU190-sc-2011-01-27-1060379 87.77 0.31 39 2016-01-29T08:05:27 GCA_053203845.1 837636 39 6649_8#22 SMRU190-sc-2011-01-27-1060379 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024181 1313 GCF_001165425.1 Generic.1.0 87.77 SRA GCF_001165425.1 category_na live 2018-03-09T12:07:53Z SMRU190 PRJEB2357 GCF_001165425.1-RS_2026_01_14 SC SC 39 2018-03-09T12:07:53Z 2011-10-18T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKNB01 2008-03-17 6C 2011-10-18T09:14:37Z Prokka current 39 SMRU190-sc-2011-01-27-1060379 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKNB01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU190 species_match 98.74 SAMEA1024181 7 Streptococcus pneumoniae 91.25 Streptococcus pneumoniae 1313 PRJEB2357 7 current na Best-placed reference protein set; GeneMarkS-2+ 94175 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-14 6C 6C species Homo sapiens 2037 Streptococcus pneumoniae Streptococcus pneumoniae ERS019348 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-03-17 v1.2.4 2012-01-20T19:43:06.656 98.97 2110648 91.25 1313 2237 2024-02-06T09:04:05.000 2110648 94175 2110629 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 158 EBI 100 GCA_053203845.1 GCF_001165425.1-RS_2026_01_14 SLX Streptococcus pneumoniae GCF_001165425.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 45.4964 https://www.ncbi.nlm.nih.gov/nuccore/CKNB00000000.1 2011-10-18T09:14:37Z GCF_001165425.1 haploid public SMRU190-sc-2011-01-27-1060379 87.77 0.31 39 2016-01-29T08:05:27 GCA_053203845.1 837636 42 6649_8#22 SMRU190-sc-2011-01-27-1060379 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1024181 1313 GCA_001165425.1 Generic.1.0 87.77 SRA GCA_001165425.1 category_na live 2018-03-09T12:07:53Z SMRU190 PRJEB2357 Annotation submitted by SC SC SC 39 2018-03-09T12:07:53Z 2011-10-18T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKNB01 2008-03-17 SMRU190 6.10 2011-10-18T09:14:37Z Prokka current 39 SMRU190-sc-2011-01-27-1060379 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKNB01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU190 species_match 98.74 SAMEA1025299 9 Streptococcus pneumoniae 88.52 Streptococcus pneumoniae 1313 PRJEB2395 9 current na 81392 type Streptococcus pneumoniae 2015-07-18 6B 6B species Homo sapiens 2098 Streptococcus pneumoniae Streptococcus pneumoniae ERS020755 SC 2009-02-19 v1.2.4 2012-01-20T19:56:12.066 99.15 2141870 88.52 1313 2139 2024-02-05T16:33:15.000 2141901 81392 2141857 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001199315.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CRGE00000000.1 2011-11-15T09:28:16Z GCA_001199315.1 haploid public SMRU1245-sc-2011-01-27-1061458 86.4 0.31 49 2015-07-28T08:11:32 GCA_053203845.1 849314 41 6736_5#21 SMRU1245-sc-2011-01-27-1061458 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025299 1313 GCF_001199315.1 Generic.1.0 86.4 SRA GCF_001199315.1 category_na live 2018-03-09T09:53:07Z SMRU1245 PRJEB2395 GCF_001199315.1-RS_2026_01_18 SC SC 48 2018-03-09T09:53:07Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRGE01 2009-02-19 SMRU1245 2011-11-15T09:28:16Z Prokka current 48 SMRU1245-sc-2011-01-27-1061458 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRGE01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1245 species_match 98.74 SAMEA1025299 9 Streptococcus pneumoniae 88.52 Streptococcus pneumoniae 1313 PRJEB2395 9 current na Best-placed reference protein set; GeneMarkS-2+ 81392 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 6B 6B species Homo sapiens 2014 Streptococcus pneumoniae Streptococcus pneumoniae ERS020755 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-02-19 v1.2.4 2012-01-20T19:56:12.066 99.15 2141870 88.52 1313 2221 2024-02-05T16:33:15.000 2141901 81392 2141857 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 164 EBI 100 GCA_053203845.1 GCF_001199315.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001199315.1 type nasopharynx 98.74 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CRGE00000000.1 2011-11-15T09:28:16Z GCF_001199315.1 haploid public SMRU1245-sc-2011-01-27-1061458 86.4 0.31 49 2015-07-28T08:11:32 GCA_053203845.1 849314 43 6736_5#21 SMRU1245-sc-2011-01-27-1061458 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025299 1313 GCA_001199315.1 Generic.1.0 86.4 SRA GCA_001199315.1 category_na live 2018-03-09T09:53:07Z SMRU1245 PRJEB2395 Annotation submitted by SC SC SC 48 2018-03-09T09:53:07Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRGE01 2009-02-19 SMRU1245 6.10 2011-11-15T09:28:16Z Prokka current 48 SMRU1245-sc-2011-01-27-1061458 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRGE01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1245 species_match 98.74 SAMEA1024927 8 Streptococcus pneumoniae 90.17 Streptococcus pneumoniae 1313 PRJEB2393 9 current na 80667 type Streptococcus pneumoniae 2015-07-11 6C 6C species Homo sapiens 2087 Streptococcus pneumoniae Streptococcus pneumoniae ERS020460 SC 2008-11-06 v1.2.4 2012-01-20T19:52:54.430 99.1 2126907 90.17 1313 2129 2024-02-06T09:03:57.000 2126929 77102 2126901 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001108465.1 type nasopharynx 98.78 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CKQI00000000.1 2011-10-25T09:28:13Z GCA_001108465.1 haploid public SMRU950-sc-2011-01-27-1061163 87.4 0.31 62 2015-07-28T08:10:58 GCA_053203845.1 841530 42 6680_6#14 SMRU950-sc-2011-01-27-1061163 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024927 1313 GCF_001108465.1 Generic.1.0 87.4 SRA GCF_001108465.1 category_na live 2018-03-09T12:05:03Z SMRU950 PRJEB2393 GCF_001108465.1-RS_2026_01_05 SC SC 60 2018-03-09T12:05:03Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKQI01 2008-11-06 SMRU950 2011-10-25T09:28:13Z Prokka current 60 SMRU950-sc-2011-01-27-1061163 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKQI01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU950 species_match 98.78 SAMEA1024927 8 Streptococcus pneumoniae 90.17 Streptococcus pneumoniae 1313 PRJEB2393 9 current na Best-placed reference protein set; GeneMarkS-2+ 80667 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-05 6C 6C species Homo sapiens 2046 Streptococcus pneumoniae Streptococcus pneumoniae ERS020460 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-11-06 v1.2.4 2012-01-20T19:52:54.430 99.1 2126907 90.17 1313 2235 2024-02-06T09:03:57.000 2126929 77102 2126901 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 145 EBI 100 GCA_053203845.1 GCF_001108465.1-RS_2026_01_05 SLX Streptococcus pneumoniae GCF_001108465.1 type nasopharynx 98.78 OK 39.5 Streptococcus pneumoniae 56.136 https://www.ncbi.nlm.nih.gov/nuccore/CKQI00000000.1 2011-10-25T09:28:13Z GCF_001108465.1 haploid public SMRU950-sc-2011-01-27-1061163 87.4 0.31 62 2015-07-28T08:10:58 GCA_053203845.1 841530 44 6680_6#14 SMRU950-sc-2011-01-27-1061163 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024927 1313 GCA_001108465.1 Generic.1.0 87.4 SRA GCA_001108465.1 category_na live 2018-03-09T12:05:03Z SMRU950 PRJEB2393 Annotation submitted by SC SC SC 60 2018-03-09T12:05:03Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKQI01 2008-11-06 SMRU950 6.10 2011-10-25T09:28:13Z Prokka current 60 SMRU950-sc-2011-01-27-1061163 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKQI01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU950 species_match 98.78 SAMEA1025867 6 Streptococcus pneumoniae 89.55 Streptococcus pneumoniae 1313 PRJEB2397 7 current na 76189 type Streptococcus pneumoniae 2015-07-13 7B 7B species Homo sapiens 2070 Streptococcus pneumoniae Streptococcus pneumoniae ERS021682 SC 2009-10-12 v1.2.4 2012-01-20T20:06:43.513 98.94 2104935 89.55 1313 2107 2024-02-06T09:03:13.000 2104968 76189 2104877 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001141565.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/CLHF00000000.1 2012-01-05T17:11:35Z GCA_001141565.1 haploid public SMRU2172-sc-2011-01-27-1062385 90.07 0.47 57 2015-07-28T08:12:30 GCA_001679515.1 830252 37 6925_5#12 SMRU2172-sc-2011-01-27-1062385 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025867 1313 GCF_001141565.1 Generic.1.0 90.07 SRA GCF_001141565.1 category_na live 2018-03-09T11:54:03Z SMRU2172 PRJEB2397 GCF_001141565.1-RS_2026_01_27 SC SC 54 2018-03-09T11:54:03Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLHF01 2009-10-12 SMRU2172 2012-01-05T17:11:35Z Prokka current 54 SMRU2172-sc-2011-01-27-1062385 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLHF01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2172 species_match 98.76 SAMEA1025867 6 Streptococcus pneumoniae 89.55 Streptococcus pneumoniae 1313 PRJEB2397 7 current na Best-placed reference protein set; GeneMarkS-2+ 76189 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-27 7B 7B species Homo sapiens 1976 Streptococcus pneumoniae Streptococcus pneumoniae ERS021682 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-10-12 v1.2.4 2012-01-20T20:06:43.513 98.94 2104935 89.55 1313 2206 2024-02-06T09:03:13.000 2104968 76189 2104877 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 189 EBI 100 GCA_001679515.1 GCF_001141565.1-RS_2026_01_27 SLX Streptococcus pneumoniae GCF_001141565.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/CLHF00000000.1 2012-01-05T17:11:35Z GCF_001141565.1 haploid public SMRU2172-sc-2011-01-27-1062385 90.07 0.47 57 2015-07-28T08:12:30 GCA_001679515.1 830252 41 6925_5#12 SMRU2172-sc-2011-01-27-1062385 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025867 1313 GCA_001141565.1 Generic.1.0 90.07 SRA GCA_001141565.1 category_na live 2018-03-09T11:54:03Z SMRU2172 PRJEB2397 Annotation submitted by SC SC SC 54 2018-03-09T11:54:03Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLHF01 2009-10-12 SMRU2172 6.10 2012-01-05T17:11:35Z Prokka current 54 SMRU2172-sc-2011-01-27-1062385 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLHF01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2172 species_match 98.76 SAMEA1023809 9 Streptococcus pneumoniae 87.78 Streptococcus pneumoniae 1313 PRJEB2357 9 current na 73894 type Streptococcus pneumoniae 2015-07-11 6B 6B species Homo sapiens 2123 Streptococcus pneumoniae Streptococcus pneumoniae ERS019382 SC 2008-03-26 v1.2.4 2012-01-20T19:43:31.360 99.15 2160715 87.78 1313 2166 2024-02-06T09:04:05.000 2160725 73894 2160698 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001122565.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CKNV00000000.1 2011-10-25T09:28:12Z GCA_001122565.1 haploid public SMRU224-sc-2011-01-27-1060413 86.43 0.31 56 2016-01-29T08:05:28 GCA_053203845.1 856478 43 6664_1#8 SMRU224-sc-2011-01-27-1060413 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023809 1313 GCF_001122565.1 Generic.1.0 86.43 SRA GCF_001122565.1 category_na live 2018-03-09T12:07:53Z SMRU224 PRJEB2357 GCF_001122565.1-RS_2026_01_18 SC SC 55 2018-03-09T12:07:53Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKNV01 2008-03-26 6B 2011-10-25T09:28:12Z Prokka current 55 SMRU224-sc-2011-01-27-1060413 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKNV01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU224 species_match 98.75 SAMEA1023809 9 Streptococcus pneumoniae 87.78 Streptococcus pneumoniae 1313 PRJEB2357 9 current na Best-placed reference protein set; GeneMarkS-2+ 73894 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-18 6B 6B species Homo sapiens 2028 Streptococcus pneumoniae Streptococcus pneumoniae ERS019382 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-03-26 v1.2.4 2012-01-20T19:43:31.360 99.15 2160715 87.78 1313 2236 2024-02-06T09:04:05.000 2160725 73894 2160698 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 163 EBI 100 GCA_053203845.1 GCF_001122565.1-RS_2026_01_18 SLX Streptococcus pneumoniae GCF_001122565.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CKNV00000000.1 2011-10-25T09:28:12Z GCF_001122565.1 haploid public SMRU224-sc-2011-01-27-1060413 86.43 0.31 56 2016-01-29T08:05:28 GCA_053203845.1 856478 45 6664_1#8 SMRU224-sc-2011-01-27-1060413 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023809 1313 GCA_001122565.1 Generic.1.0 86.43 SRA GCA_001122565.1 category_na live 2018-03-09T12:07:53Z SMRU224 PRJEB2357 Annotation submitted by SC SC SC 55 2018-03-09T12:07:53Z 2011-10-25T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKNV01 2008-03-26 SMRU224 6.10 2011-10-25T09:28:12Z Prokka current 55 SMRU224-sc-2011-01-27-1060413 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKNV01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU224 species_match 98.75 SAMEA1025111 10 Streptococcus pneumoniae 88.35 Streptococcus pneumoniae 1313 PRJEB2395 10 current na 73606 type Streptococcus pneumoniae 2015-07-18 6B 6B species Homo sapiens 2139 Streptococcus pneumoniae Streptococcus pneumoniae ERS020730 SC 2009-02-09 v1.2.4 2012-01-20T19:55:54.243 99.15 2162743 88.35 1313 2181 2024-02-05T16:22:45.000 2162743 73606 2162730 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001194865.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CRFO00000000.1 2011-11-15T09:28:17Z GCA_001194865.1 haploid public SMRU1220-sc-2011-01-27-1061433 87.07 0.31 51 2015-07-28T08:11:31 GCA_053203845.1 857359 42 6736_4#20 SMRU1220-sc-2011-01-27-1061433 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025111 1313 GCF_001194865.1 Generic.1.0 87.07 SRA GCF_001194865.1 category_na live 2018-03-09T09:52:59Z SMRU1220 PRJEB2395 GCF_001194865.1-RS_2026_01_06 SC SC 51 2018-03-09T09:52:59Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRFO01 2009-02-09 SMRU1220 2011-11-15T09:28:17Z Prokka current 51 SMRU1220-sc-2011-01-27-1061433 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRFO01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1220 species_match 98.72 SAMEA1025111 10 Streptococcus pneumoniae 88.35 Streptococcus pneumoniae 1313 PRJEB2395 10 current na Best-placed reference protein set; GeneMarkS-2+ 73606 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-06 6B 6B species Homo sapiens 2063 Streptococcus pneumoniae Streptococcus pneumoniae ERS020730 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-02-09 v1.2.4 2012-01-20T19:55:54.243 99.15 2162743 88.35 1313 2254 2024-02-05T16:22:45.000 2162743 73606 2162730 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 147 EBI 100 GCA_053203845.1 GCF_001194865.1-RS_2026_01_06 SLX Streptococcus pneumoniae GCF_001194865.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 64.8358 https://www.ncbi.nlm.nih.gov/nuccore/CRFO00000000.1 2011-11-15T09:28:17Z GCF_001194865.1 haploid public SMRU1220-sc-2011-01-27-1061433 87.07 0.31 51 2015-07-28T08:11:31 GCA_053203845.1 857359 44 6736_4#20 SMRU1220-sc-2011-01-27-1061433 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025111 1313 GCA_001194865.1 Generic.1.0 87.07 SRA GCA_001194865.1 category_na live 2018-03-09T09:52:59Z SMRU1220 PRJEB2395 Annotation submitted by SC SC SC 51 2018-03-09T09:52:59Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRFO01 2009-02-09 SMRU1220 6.10 2011-11-15T09:28:17Z Prokka current 51 SMRU1220-sc-2011-01-27-1061433 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRFO01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1220 species_match 98.72 SAMEA1028743 10 Streptococcus pneumoniae 90.77 Streptococcus pneumoniae 1313 PRJEB2479 10 current na 73216 type Streptococcus pneumoniae 2015-07-14 6C 6C species Homo sapiens 2123 Streptococcus pneumoniae Streptococcus pneumoniae ERS022346 SC 2010-06-22 v1.2.4 2012-01-20T20:13:29.896 99.29 2117258 90.77 1313 2163 2024-02-06T09:02:24.000 2117258 73216 2117248 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001171485.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 78.8426 https://www.ncbi.nlm.nih.gov/nuccore/CMAS00000000.1 2012-01-16T15:10:28Z GCA_001171485.1 haploid public SMRU2836-sc-2011-01-27-1063049 87.58 1.56 57 2015-07-28T08:12:57 GCA_053203845.1 840551 40 7004_6#28 SMRU2836-sc-2011-01-27-1063049 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028743 1313 GCF_001171485.1 Generic.1.0 87.58 SRA GCF_001171485.1 category_na live 2018-03-09T11:43:42Z SMRU2836 PRJEB2479 GCF_001171485.1-RS_2026_01_19 SC SC 57 2018-03-09T11:43:42Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMAS01 2010-06-22 SMRU2836 2012-01-16T15:10:28Z Prokka current 57 SMRU2836-sc-2011-01-27-1063049 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMAS01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2836 species_match 98.76 SAMEA1028743 10 Streptococcus pneumoniae 90.77 Streptococcus pneumoniae 1313 PRJEB2479 10 current na Best-placed reference protein set; GeneMarkS-2+ 73216 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 6C 6C species Homo sapiens 2050 Streptococcus pneumoniae Streptococcus pneumoniae ERS022346 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-06-22 v1.2.4 2012-01-20T20:13:29.896 99.29 2117258 90.77 1313 2258 2024-02-06T09:02:24.000 2117258 73216 2117248 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 165 EBI 100 GCA_053203845.1 GCF_001171485.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001171485.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 78.8426 https://www.ncbi.nlm.nih.gov/nuccore/CMAS00000000.1 2012-01-16T15:10:28Z GCF_001171485.1 haploid public SMRU2836-sc-2011-01-27-1063049 87.58 1.56 57 2015-07-28T08:12:57 GCA_053203845.1 840551 43 7004_6#28 SMRU2836-sc-2011-01-27-1063049 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028743 1313 GCA_001171485.1 Generic.1.0 87.58 SRA GCA_001171485.1 category_na live 2018-03-09T11:43:42Z SMRU2836 PRJEB2479 Annotation submitted by SC SC SC 57 2018-03-09T11:43:42Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMAS01 2010-06-22 SMRU2836 6.10 2012-01-16T15:10:28Z Prokka current 57 SMRU2836-sc-2011-01-27-1063049 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMAS01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2836 species_match 98.76 SAMEA1028892 10 Streptococcus pneumoniae 85.87 Streptococcus pneumoniae 1313 PRJEB2479 10 current na 78099 type Streptococcus pneumoniae 2015-07-23 7B 7B species Homo sapiens 2106 Streptococcus pneumoniae Streptococcus pneumoniae ERS022290 SC 2010-06-02 v1.2.4 2012-01-23T19:52:05.740 98.94 2194894 85.87 1313 2146 2024-02-05T16:33:48.000 2194905 78099 2194877 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001346195.1 type nasopharynx 98.83 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/CFDU00000000.1 2012-01-19T13:56:00Z GCA_001346195.1 haploid public SMRU2780-sc-2011-01-27-1062993 85.9 5.81 62 2015-07-28T08:13:04 GCA_053203845.1 869720 40 7011_4#20 SMRU2780-sc-2011-01-27-1062993 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028892 1313 GCF_001346195.1 Generic.1.0 85.9 SRA GCF_001346195.1 category_na live 2018-03-09T09:53:07Z SMRU2780 PRJEB2479 GCF_001346195.1-RS_2026_02_04 SC SC 61 2018-03-09T09:53:07Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFDU01 2010-06-02 SMRU2780 2012-01-19T13:56:00Z Prokka current 61 SMRU2780-sc-2011-01-27-1062993 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFDU01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-01 SMRU2780 species_match 98.83 SAMEA1028892 10 Streptococcus pneumoniae 85.87 Streptococcus pneumoniae 1313 PRJEB2479 10 current na Best-placed reference protein set; GeneMarkS-2+ 78099 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-04 7B 7B species Homo sapiens 2026 Streptococcus pneumoniae Streptococcus pneumoniae ERS022290 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-06-02 v1.2.4 2012-01-23T19:52:05.740 98.94 2194894 85.87 1313 2259 2024-02-05T16:33:48.000 2194905 78099 2194877 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 191 EBI 100 GCA_053203845.1 GCF_001346195.1-RS_2026_02_04 SLX Streptococcus pneumoniae GCF_001346195.1 type nasopharynx 98.83 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/CFDU00000000.1 2012-01-19T13:56:00Z GCF_001346195.1 haploid public SMRU2780-sc-2011-01-27-1062993 85.9 5.81 62 2015-07-28T08:13:04 GCA_053203845.1 869720 42 7011_4#20 SMRU2780-sc-2011-01-27-1062993 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028892 1313 GCA_001346195.1 Generic.1.0 85.9 SRA GCA_001346195.1 category_na live 2018-03-09T09:53:07Z SMRU2780 PRJEB2479 Annotation submitted by SC SC SC 61 2018-03-09T09:53:07Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CFDU01 2010-06-02 SMRU2780 6.10 2012-01-19T13:56:00Z Prokka current 61 SMRU2780-sc-2011-01-27-1062993 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CFDU01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-01 SMRU2780 species_match 98.83 SAMEA1025523 8 Streptococcus pneumoniae 91.3 Streptococcus pneumoniae 1313 PRJEB2395 8 current na 74527 type Streptococcus pneumoniae 2015-07-17 7B 7B species Homo sapiens 2022 Streptococcus pneumoniae Streptococcus pneumoniae ERS020931 SC 2009-04-07 v1.2.4 2012-01-20T19:58:07.456 99.31 2067552 91.3 1313 2066 2024-02-05T16:25:06.000 2067552 74527 2067534 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001103785.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRSH00000000.1 2011-11-29T12:03:48Z GCA_001103785.1 haploid public SMRU1421-sc-2011-01-27-1061634 86.02 0.73 54 2015-07-28T08:11:50 GCA_053203845.1 818123 44 6805_2#5 SMRU1421-sc-2011-01-27-1061634 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025523 1313 GCF_001103785.1 Generic.1.0 86.02 SRA GCF_001103785.1 category_na live 2018-03-09T09:53:01Z SMRU1421 PRJEB2395 GCF_001103785.1-RS_2026_01_19 SC SC 54 2018-03-09T09:53:01Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRSH01 2009-04-07 SMRU1421 2011-11-29T12:03:48Z Prokka current 54 SMRU1421-sc-2011-01-27-1061634 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRSH01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1421 species_match 98.8 SAMEA1025523 8 Streptococcus pneumoniae 91.3 Streptococcus pneumoniae 1313 PRJEB2395 8 current na Best-placed reference protein set; GeneMarkS-2+ 74527 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 7B 7B species Homo sapiens 1931 Streptococcus pneumoniae Streptococcus pneumoniae ERS020931 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-07 v1.2.4 2012-01-20T19:58:07.456 99.31 2067552 91.3 1313 2146 2024-02-05T16:25:06.000 2067552 74527 2067534 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 168 EBI 100 GCA_053203845.1 GCF_001103785.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001103785.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CRSH00000000.1 2011-11-29T12:03:48Z GCF_001103785.1 haploid public SMRU1421-sc-2011-01-27-1061634 86.02 0.73 54 2015-07-28T08:11:50 GCA_053203845.1 818123 47 6805_2#5 SMRU1421-sc-2011-01-27-1061634 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025523 1313 GCA_001103785.1 Generic.1.0 86.02 SRA GCA_001103785.1 category_na live 2018-03-09T09:53:01Z SMRU1421 PRJEB2395 Annotation submitted by SC SC SC 54 2018-03-09T09:53:01Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRSH01 2009-04-07 SMRU1421 6.10 2011-11-29T12:03:48Z Prokka current 54 SMRU1421-sc-2011-01-27-1061634 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRSH01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1421 species_match 98.8 SAMEA1032680 10 Streptococcus pneumoniae 91.63 Streptococcus pneumoniae 1313 PRJEB2632 10 current na 64700 type Streptococcus pneumoniae 2015-07-28 7C 7C species Homo sapiens 1971 Streptococcus pneumoniae Streptococcus pneumoniae ERS044064 SC 2001 v1.2.3 2012-01-23T19:53:56.900 99.26 2059371 91.63 1313 1999 2024-02-05T23:55:07.000 2059371 64700 2059371 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001300555.2 type nasopharynx 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CHXD00000000.2 2012-01-19T13:56:13Z GCA_001300555.2 haploid public 095344-sc-2011-08-01T09:45:17Z-1250129 89.39 0.47 176 2015-09-10T08:19:58 GCA_001457635.1 814427 28 6999_4#7 095344-sc-2011-08-01T09:45:17Z-1250129 USA: Massachesetts Streptococcus pneumoniae SAMEA1032680 1313 GCF_001300555.1 Generic.1.0 89.39 SRA GCF_001300555.1 category_na live 2018-03-09T10:05:59Z 95344 PRJEB2632 GCF_001300555.1-RS_2025_03_31 SC SC 176 2018-03-09T10:05:59Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHXD02 2001 95344 2012-01-19T13:56:13Z Velvet current 176 095344-sc-2011-08-01T09:45:17Z-1250129 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CHXD02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-28 095344 species_match 98.79 SAMEA1032680 10 Streptococcus pneumoniae 91.63 Streptococcus pneumoniae 1313 PRJEB2632 10 current na Best-placed reference protein set; GeneMarkS-2+ 64700 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-03-31 7C 7C species Homo sapiens 1906 Streptococcus pneumoniae Streptococcus pneumoniae ERS044064 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2001 v1.2.3 2012-01-23T19:53:56.900 99.26 2059371 91.63 1313 2110 2024-02-05T23:55:07.000 2059371 64700 2059371 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 165 EBI 100 GCA_001457635.1 GCF_001300555.1-RS_2025_03_31 SLX Streptococcus pneumoniae GCF_001300555.1 type nasopharynx 98.79 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CHXD00000000.2 2012-01-19T13:56:13Z GCF_001300555.1 haploid public 095344-sc-2011-08-01T09:45:17Z-1250129 89.39 0.47 176 2015-09-10T08:19:58 GCA_001457635.1 814427 39 6999_4#7 095344-sc-2011-08-01T09:45:17Z-1250129 USA: Massachesetts Streptococcus pneumoniae SAMEA1032680 1313 GCA_001300555.2 Generic.1.0 89.39 SRA GCA_001300555.2 category_na live 2018-03-09T10:05:59Z 95344 PRJEB2632 Annotation submitted by SC SC SC 176 2018-03-09T10:05:59Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHXD02 2001 95344 6.10 2012-01-19T13:56:13Z Velvet current 176 095344-sc-2011-08-01T09:45:17Z-1250129 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CHXD02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-28 095344 species_match 98.79 SAMEA974686 13 Streptococcus pneumoniae 88.86 Streptococcus pneumoniae 1313 PRJEB2357 13 current na 58636 type Streptococcus pneumoniae 2015-07-11 7B 7B species Homo sapiens 2142 Streptococcus pneumoniae Streptococcus pneumoniae ERS019164 SC 2007-11-20 v1.2.4 2011-07-31T19:54:41.823 99.31 2164081 88.86 1313 2184 2024-02-05T16:34:37.000 2164134 58636 2164075 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001090465.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKAA00000000.1 2011-07-27T10:09:45Z GCA_001090465.1 haploid public SMRU6-sc-2011-01-27-1026431 87.63 0.94 71 2016-01-29T08:05:13 GCA_053203845.1 855178 42 6259_5#6 SMRU6-sc-2011-01-27-1026431 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974686 1313 GCF_001090465.1 Generic.1.0 87.63 SRA GCF_001090465.1 category_na live 2018-03-09T09:53:07Z SMRU6 PRJEB2357 GCF_001090465.1-RS_2026_01_21 SC SC 68 2018-03-09T09:53:07Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKAA01 2007-11-20 7B 2011-07-27T10:09:45Z Prokka current 68 SMRU6-sc-2011-01-27-1026431 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKAA01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU6 species_match 98.76 SAMEA974686 13 Streptococcus pneumoniae 88.86 Streptococcus pneumoniae 1313 PRJEB2357 13 current na Best-placed reference protein set; GeneMarkS-2+ 58636 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-21 7B 7B species Homo sapiens 2048 Streptococcus pneumoniae Streptococcus pneumoniae ERS019164 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007-11-20 v1.2.4 2011-07-31T19:54:41.823 99.31 2164081 88.86 1313 2268 2024-02-05T16:34:37.000 2164134 58636 2164075 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 175 EBI 100 GCA_053203845.1 GCF_001090465.1-RS_2026_01_21 SLX Streptococcus pneumoniae GCF_001090465.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKAA00000000.1 2011-07-27T10:09:45Z GCF_001090465.1 haploid public SMRU6-sc-2011-01-27-1026431 87.63 0.94 71 2016-01-29T08:05:13 GCA_053203845.1 855178 45 6259_5#6 SMRU6-sc-2011-01-27-1026431 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974686 1313 GCA_001090465.1 Generic.1.0 87.63 SRA GCA_001090465.1 category_na live 2018-03-09T09:53:07Z SMRU6 PRJEB2357 Annotation submitted by SC SC SC 68 2018-03-09T09:53:07Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKAA01 2007-11-20 SMRU6 6.10 2011-07-27T10:09:45Z Prokka current 68 SMRU6-sc-2011-01-27-1026431 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKAA01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU6 species_match 98.76 SAMEA974687 13 Streptococcus pneumoniae 89.12 Streptococcus pneumoniae 1313 PRJEB2357 13 current na 58390 type Streptococcus pneumoniae 2015-07-11 7B 7B species Homo sapiens 2138 Streptococcus pneumoniae Streptococcus pneumoniae ERS019165 SC 2007-11-25 v1.2.4 2011-07-31T19:54:42.623 99.2 2157918 89.12 1313 2180 2024-02-06T09:04:00.000 2157928 58390 2157903 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001148545.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 69.3105 https://www.ncbi.nlm.nih.gov/nuccore/CJZX00000000.1 2011-07-27T10:09:45Z GCA_001148545.1 haploid public SMRU7-sc-2011-01-27-1026432 87.64 0.31 70 2016-01-29T08:05:13 GCA_053203845.1 852674 42 6259_5#7 SMRU7-sc-2011-01-27-1026432 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974687 1313 GCF_001148545.1 Generic.1.0 87.64 SRA GCF_001148545.1 category_na live 2018-03-09T12:05:43Z SMRU7 PRJEB2357 GCF_001148545.1-RS_2026_01_19 SC SC 69 2018-03-09T12:05:43Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CJZX01 2007-11-25 7B 2011-07-27T10:09:45Z Prokka current 69 SMRU7-sc-2011-01-27-1026432 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CJZX01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU7 species_match 98.76 SAMEA974687 13 Streptococcus pneumoniae 89.12 Streptococcus pneumoniae 1313 PRJEB2357 13 current na Best-placed reference protein set; GeneMarkS-2+ 58390 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 7B 7B species Homo sapiens 2043 Streptococcus pneumoniae Streptococcus pneumoniae ERS019165 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007-11-25 v1.2.4 2011-07-31T19:54:42.623 99.2 2157918 89.12 1313 2257 2024-02-06T09:04:00.000 2157928 58390 2157903 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 168 EBI 100 GCA_053203845.1 GCF_001148545.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001148545.1 type nasopharynx 98.76 OK 39.5 Streptococcus pneumoniae 69.3105 https://www.ncbi.nlm.nih.gov/nuccore/CJZX00000000.1 2011-07-27T10:09:45Z GCF_001148545.1 haploid public SMRU7-sc-2011-01-27-1026432 87.64 0.31 70 2016-01-29T08:05:13 GCA_053203845.1 852674 46 6259_5#7 SMRU7-sc-2011-01-27-1026432 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA974687 1313 GCA_001148545.1 Generic.1.0 87.64 SRA GCA_001148545.1 category_na live 2018-03-09T12:05:43Z SMRU7 PRJEB2357 Annotation submitted by SC SC SC 69 2018-03-09T12:05:43Z 2011-07-27T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CJZX01 2007-11-25 SMRU7 6.10 2011-07-27T10:09:45Z Prokka current 69 SMRU7-sc-2011-01-27-1026432 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CJZX01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU7 species_match 98.76 SAMEA1025589 16 Streptococcus pneumoniae 88.49 Streptococcus pneumoniae 1313 PRJEB2395 16 current na 52216 type Streptococcus pneumoniae 2015-07-24 7B 7B species Homo sapiens 2178 Streptococcus pneumoniae Streptococcus pneumoniae ERS021035 SC 2009-05-12 v1.2.4 2012-01-20T19:59:16.796 99.31 2176756 88.49 1313 2219 2024-02-05T16:20:03.000 2176756 52216 2176744 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001342615.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CHTH00000000.1 2011-11-15T09:28:16Z GCA_001342615.1 haploid public SMRU1525-sc-2011-01-27-1061738 87.78 0.31 93 2015-07-28T08:11:44 GCA_053203845.1 860293 41 6753_3#13 SMRU1525-sc-2011-01-27-1061738 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025589 1313 GCF_001342615.1 Generic.1.0 87.78 SRA GCF_001342615.1 category_na live 2018-03-09T09:52:56Z SMRU1525 PRJEB2395 GCF_001342615.1-RS_2026_02_04 SC SC 93 2018-03-09T09:52:56Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHTH01 2009-05-12 SMRU1525 2011-11-15T09:28:16Z Prokka current 93 SMRU1525-sc-2011-01-27-1061738 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHTH01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU1525 species_match 98.73 SAMEA1025589 16 Streptococcus pneumoniae 88.49 Streptococcus pneumoniae 1313 PRJEB2395 16 current na Best-placed reference protein set; GeneMarkS-2+ 52216 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-04 7B 7B species Homo sapiens 2081 Streptococcus pneumoniae Streptococcus pneumoniae ERS021035 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-05-12 v1.2.4 2012-01-20T19:59:16.796 99.31 2176756 88.49 1313 2296 2024-02-05T16:20:03.000 2176756 52216 2176744 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 169 EBI 100 GCA_053203845.1 GCF_001342615.1-RS_2026_02_04 SLX Streptococcus pneumoniae GCF_001342615.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CHTH00000000.1 2011-11-15T09:28:16Z GCF_001342615.1 haploid public SMRU1525-sc-2011-01-27-1061738 87.78 0.31 93 2015-07-28T08:11:44 GCA_053203845.1 860293 46 6753_3#13 SMRU1525-sc-2011-01-27-1061738 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025589 1313 GCA_001342615.1 Generic.1.0 87.78 SRA GCA_001342615.1 category_na live 2018-03-09T09:52:56Z SMRU1525 PRJEB2395 Annotation submitted by SC SC SC 93 2018-03-09T09:52:56Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHTH01 2009-05-12 SMRU1525 6.10 2011-11-15T09:28:16Z Prokka current 93 SMRU1525-sc-2011-01-27-1061738 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHTH01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU1525 species_match 98.73 SAMEA1463157 16 Streptococcus pneumoniae 92.11 Streptococcus pneumoniae 1313 PRJEB2632 16 current na 47752 type Streptococcus pneumoniae 2015-07-29 7C 7C species Homo sapiens 2018 Streptococcus pneumoniae Streptococcus pneumoniae ERS070078 SC 2007 v1.2.4 2012-06-06T09:06:38.986 99.31 2098183 92.11 1313 2049 2024-02-06T09:02:33.000 W9G4K 2098183 47752 2098183 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001137345.2 type nasopharynx 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/COFA00000000.2 2012-05-28T10:19:34Z GCA_001137345.2 haploid public ND6000-sc-2011-11-08T10:08:20Z-1298446 88.07 0.31 163 2015-09-10T08:20:51 W9G4K GCA_053203845.1 830310 31 7622_5#67 ND6000-sc-2011-11-08T10:08:20Z-1298446 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463157 1313 GCF_001137345.1 Generic.1.0 88.07 SRA GCF_001137345.1 category_na live 2018-03-09T11:45:31Z ND6000 PRJEB2632 GCF_001137345.1-RS_2025_09_15 SC SC 163 W9G4K 2018-03-09T11:45:31Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COFA02 2007 ND6000 2012-05-28T10:19:34Z Velvet current 163 ND6000-sc-2011-11-08T10:08:20Z-1298446 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COFA02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 ND6000 species_match 98.8 SAMEA1463157 16 Streptococcus pneumoniae 92.11 Streptococcus pneumoniae 1313 PRJEB2632 16 current na Best-placed reference protein set; GeneMarkS-2+ 47752 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-15 7C 7C species Homo sapiens 1947 Streptococcus pneumoniae Streptococcus pneumoniae ERS070078 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:38.986 99.31 2098183 92.11 1313 2173 2024-02-06T09:02:33.000 W9G4K 2098183 47752 2098183 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 175 EBI 100 GCA_053203845.1 GCF_001137345.1-RS_2025_09_15 SLX Streptococcus pneumoniae GCF_001137345.1 type nasopharynx 98.8 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/COFA00000000.2 2012-05-28T10:19:34Z GCF_001137345.1 haploid public ND6000-sc-2011-11-08T10:08:20Z-1298446 88.07 0.31 163 2015-09-10T08:20:51 W9G4K GCA_053203845.1 830310 51 7622_5#67 ND6000-sc-2011-11-08T10:08:20Z-1298446 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463157 1313 GCA_001137345.2 Generic.1.0 88.07 SRA GCA_001137345.2 category_na live 2018-03-09T11:45:31Z ND6000 PRJEB2632 Annotation submitted by SC SC SC 163 W9G4K 2018-03-09T11:45:31Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COFA02 2007 ND6000 6.10 2012-05-28T10:19:34Z Velvet current 163 ND6000-sc-2011-11-08T10:08:20Z-1298446 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COFA02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 ND6000 species_match 98.8 SAMEA1026584 13 Streptococcus pneumoniae 93.42 Streptococcus pneumoniae 1313 PRJEB2417 13 current na 46562 type Streptococcus pneumoniae 2017-06-27 7C 7C species Homo sapiens 1966 Streptococcus pneumoniae ERS023169 SC 2008-01-28 v1.2.4 2011-09-13T21:54:44.713 98.3 2050294 93.42 1313 2004 2017-06-24T15:34:03.000 2050294 46562 2050291 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900190245.1 type Nasophaynx 98.8 OK 39.5 Streptococcus pneumoniae 13.7891 https://www.ncbi.nlm.nih.gov/nuccore/FYLK00000000.1 2011-09-06 GCA_900190245.1 haploid ERS023169 87.29 0.31 63 2017-06-28T08:06:06 GCA_053203845.1 810663 38 6472_7#19 United Kingdom UoS2235-sc-2011-02-14-1078223; 6472_719 1313 GCF_900190245.1 Generic.1.0 87.29 SRA Sample Description GCF_900190245.1 category_na live 2017-06-22 UoS2235 PRJEB2417 GCF_900190245.1-RS_2025_09_04 SC 63 1078223 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYLK01 2008-01-28 UoS2235 Prokka current 63 ERS023169 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYLK01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS2235 species_match 98.8 SAMEA1026584 13 Streptococcus pneumoniae 93.42 Streptococcus pneumoniae 1313 PRJEB2417 13 current na Best-placed reference protein set; GeneMarkS-2+ 46562 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 7C 7C species Homo sapiens 1866 Streptococcus pneumoniae ERS023169 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-01-28 v1.2.4 2011-09-13T21:54:44.713 98.3 2050294 93.42 1313 2070 2017-06-24T15:34:03.000 2050294 46562 2050291 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 164 EBI 100 GCA_053203845.1 GCF_900190245.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900190245.1 type Nasophaynx 98.8 OK 39.5 Streptococcus pneumoniae 13.7891 https://www.ncbi.nlm.nih.gov/nuccore/FYLK00000000.1 2011-09-06 GCF_900190245.1 haploid ERS023169 87.29 0.31 63 2017-06-28T08:06:06 GCA_053203845.1 810663 40 6472_7#19 United Kingdom UoS2235-sc-2011-02-14-1078223; 6472_719 1313 GCA_900190245.1 Generic.1.0 87.29 SRA Sample Description GCA_900190245.1 category_na live 2017-06-22 UoS2235 PRJEB2417 Annotation submitted by SC SC 63 1078223 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYLK01 2008-01-28 UoS2235 6.10 Prokka current 63 ERS023169 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYLK01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS2235 species_match 98.8 SAMEA1463188 22 Streptococcus pneumoniae 92.77 Streptococcus pneumoniae 1313 PRJEB2632 22 current na 34224 type Streptococcus pneumoniae 2015-07-29 7C 7C species Homo sapiens 1953 Streptococcus pneumoniae Streptococcus pneumoniae ERS069938 SC 2007 v1.2.4 2012-06-06T09:06:32.083 99.31 2071903 92.77 1313 1980 2024-02-06T09:02:26.000 2VBTK 2071903 34224 2071903 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001089845.2 type nasopharynx 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/COAV00000000.2 2012-05-28T10:19:32Z GCA_001089845.2 haploid public BR1074-sc-2011-11-08T10:06:38Z-1298306 87.59 0.31 280 2015-09-10T08:20:46 2VBTK GCA_053203845.1 819535 27 7622_2#23 BR1074-sc-2011-11-08T10:06:38Z-1298306 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463188 1313 GCF_001089845.1 Generic.1.0 87.59 SRA GCF_001089845.1 category_na live 2018-03-09T11:44:07Z BR1074 PRJEB2632 GCF_001089845.1-RS_2025_09_15 SC SC 280 2VBTK 2018-03-09T11:44:07Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COAV02 2007 BR1074 2012-05-28T10:19:32Z Velvet current 280 BR1074-sc-2011-11-08T10:06:38Z-1298306 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COAV02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 BR1074 species_match 98.83 SAMEA1463188 22 Streptococcus pneumoniae 92.77 Streptococcus pneumoniae 1313 PRJEB2632 22 current na Best-placed reference protein set; GeneMarkS-2+ 34224 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-15 7C 7C species Homo sapiens 1874 Streptococcus pneumoniae Streptococcus pneumoniae ERS069938 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2007 v1.2.4 2012-06-06T09:06:32.083 99.31 2071903 92.77 1313 2088 2024-02-06T09:02:26.000 2VBTK 2071903 34224 2071903 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 175 EBI 100 GCA_053203845.1 GCF_001089845.1-RS_2025_09_15 SLX Streptococcus pneumoniae GCF_001089845.1 type nasopharynx 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/COAV00000000.2 2012-05-28T10:19:32Z GCF_001089845.1 haploid public BR1074-sc-2011-11-08T10:06:38Z-1298306 87.59 0.31 280 2015-09-10T08:20:46 2VBTK GCA_053203845.1 819535 39 7622_2#23 BR1074-sc-2011-11-08T10:06:38Z-1298306 USA: Massachesetts Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1463188 1313 GCA_001089845.2 Generic.1.0 87.59 SRA GCA_001089845.2 category_na live 2018-03-09T11:44:07Z BR1074 PRJEB2632 Annotation submitted by SC SC SC 280 2VBTK 2018-03-09T11:44:07Z 2012-05-28T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/COAV02 2007 BR1074 6.10 2012-05-28T10:19:32Z Velvet current 280 BR1074-sc-2011-11-08T10:06:38Z-1298306 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment COAV02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 BR1074 species_match 98.83 SAMEA3354032 1 Streptococcus pneumoniae 91.72 Streptococcus pneumoniae PRJEB3084 1 na 1112724 type Streptococcus pneumoniae 2019-05-10 7C 7C Homo sapiens 2018 Streptococcus pneumoniae Streptococcus pneumoniae ERS708387 SC 2014 2015-10-14T08:11:08.980 2050458 91.72 1313 2077 Streptococcus pneumoniae 2024-02-06T15:57:33.000 2050581 1112724 2050454 blood Homo sapiens IPD from large multi-isolate project ST11127 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901242605.1 type blood 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAOZS000000000.1 2015-10-13T13:59:46Z GCA_901242605.1 haploid public GPS_ZA_2950-sc-2278638 85.71 15 2018-03-10T20:10:22 GCA_053203845.1 814222 59 17175_8#69 GPS_ZA_2950-sc-2278638 South Africa 17175_8#69 SAMEA3354032 1313 Generic.1.0 85.71 SRA category_na live 2019-04-18T15:57:00Z GPSC92 PRJEB3084 SC SC 13 2278638 2019-04-18T15:57:00Z 2015-10-13T00:00:00.000 43473 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAOZS01 2014 GPSC92 substr. ST11127 2015-10-13T13:59:46Z Prokka current 13 GPS_ZA_2950-sc-2278638 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAOZS01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC92 species_match 98.77 SAMEA3389204 2 Streptococcus pneumoniae 93.07 Streptococcus pneumoniae PRJEB3084 2 na 674267 type Streptococcus pneumoniae 2019-05-10 7C 7C Homo sapiens 1967 Streptococcus pneumoniae Streptococcus pneumoniae ERS725307 SC 2014 2016-02-24T08:10:01.623 2013932 93.07 1313 2024 Streptococcus pneumoniae 2024-02-06T15:53:08.000 2014216 674267 2013931 NP swab Homo sapiens carriage from large multi-isolate project ST10587 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901287975.1 type NP swab 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAVRT000000000.1 2016-02-23T15:24:50Z GCA_901287975.1 haploid public GPS_MW_154462-sc-2295677 85.42 12 2018-03-10T20:16:04 GCA_053203845.1 799411 57 18456_1#18 GPS_MW_154462-sc-2295677 Malawi 18456_1#18 SAMEA3389204 1313 Generic.1.0 85.42 SRA category_na live 2019-04-18T15:32:42Z GPSC92 PRJEB3084 SC SC 11 2295677 2019-04-18T15:32:42Z 2016-02-23T00:00:00.000 GPS_MW_154462 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAVRT01 2014 GPSC92 substr. ST10587 2016-02-23T15:24:50Z Prokka current 11 GPS_MW_154462-sc-2295677 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAVRT01 Scaffold SOURCE_DATABASE_GENBANK Malawi 2019-05-10 GPSC92 species_match 98.77 SAMEA2521606 10 Streptococcus pneumoniae 91.3 Streptococcus pneumoniae 1313 PRJEB3084 11 current na 78689 type Streptococcus pneumoniae 2019-05-27 7C 7C species Homo sapiens 2130 Streptococcus pneumoniae Streptococcus pneumoniae ERS455146 SC 2012 v1.2.4 2014-09-17T09:08:14.333 98.68 2142557 91.3 1313 2175 Streptococcus pneumoniae 2024-02-06T15:55:08.000 2143598 72489 2142556 blood Homo sapiens Streptococcus pneumoniae IPD ST1797 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900055005.2 type blood 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae 25.3377 https://www.ncbi.nlm.nih.gov/nuccore/FHRS00000000.2 2014-09-16T09:22:33Z GCA_900055005.2 haploid public 2012221324-sc-1946898 89.15 0.31 60 2015-08-10T19:57:09 GCA_053203845.1 848299 45 13414_2#55 2012221324-sc-1946898 USA 13414_2#55 SAMEA2521606 1313 GCF_900055005.2 Generic.1.0 89.15 SRA GCF_900055005.2 category_na live 2019-04-18T15:39:23Z GPSC18 PRJEB3084 GCF_900055005.2-RS_2026_01_25 SC SC 56 1946898 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012221324 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHRS02 2012 2245STDY5819572 2014-09-16T09:22:33Z Prokka current 56 2012221324-sc-1946898 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHRS02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-27 GPSC18 species_match 98.77 SAMEA2521606 10 Streptococcus pneumoniae 91.3 Streptococcus pneumoniae 1313 PRJEB3084 11 current na Best-placed reference protein set; GeneMarkS-2+ 78689 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 7C 7C species Homo sapiens 2009 Streptococcus pneumoniae Streptococcus pneumoniae ERS455146 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:14.333 98.68 2142557 91.3 1313 2242 Streptococcus pneumoniae 2024-02-06T15:55:08.000 2143598 72489 2142556 blood Homo sapiens Streptococcus pneumoniae IPD 181 ST1797 EBI 100 GCA_053203845.1 GCF_900055005.2-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900055005.2 type blood 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae 25.3377 https://www.ncbi.nlm.nih.gov/nuccore/FHRS00000000.2 2014-09-16T09:22:33Z GCF_900055005.2 haploid public 2012221324-sc-1946898 89.15 0.31 60 2015-08-10T19:57:09 GCA_053203845.1 848299 52 13414_2#55 2012221324-sc-1946898 USA 13414_2#55 SAMEA2521606 1313 GCA_900055005.2 Generic.1.0 89.15 SRA GCA_900055005.2 category_na live 2019-04-18T15:39:23Z GPSC18 PRJEB3084 Annotation submitted by SC SC SC 56 1946898 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012221324 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHRS02 2012 GPSC18 substr. ST1797 6.10 2014-09-16T09:22:33Z Prokka current 56 2012221324-sc-1946898 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHRS02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-27 GPSC18 species_match 98.77 SAMEA3353178 2 Streptococcus pneumoniae 93.03 Streptococcus pneumoniae PRJEB3084 2 na 521323 type Streptococcus pneumoniae 2019-05-10 7C 7C Homo sapiens 1980 Streptococcus pneumoniae Streptococcus pneumoniae ERS707533 SC 2012 2015-10-14T08:10:39.433 2018462 93.03 1313 2037 Streptococcus pneumoniae 2024-02-06T15:57:06.000 2018841 521323 2018461 NP Homo sapiens Carriage from large multi-isolate project ST11742 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901248095.1 type NP 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAPUW000000000.1 2015-10-13T13:58:57Z GCA_901248095.1 haploid public GPS_ZA_carriage_SP1244-sc-2277776 85.57 18 2018-03-10T20:09:44 GCA_053203845.1 801371 57 17059_7#10 GPS_ZA_carriage_SP1244-sc-2277776 South Africa 17059_7#10 SAMEA3353178 1313 Generic.1.0 85.57 SRA category_na live 2019-04-18T15:56:53Z GPSC92 PRJEB3084 SC SC 15 2277776 2019-04-18T15:56:53Z 2015-10-13T00:00:00.000 30192 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAPUW01 2012 GPSC92 substr. ST11742 2015-10-13T13:58:57Z Prokka current 15 GPS_ZA_carriage_SP1244-sc-2277776 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAPUW01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC92 species_match 98.72 SAMEA3353462 3 Streptococcus pneumoniae 91.77 Streptococcus pneumoniae PRJEB3084 3 na 414423 type Streptococcus pneumoniae 2019-05-11 7C 7C Homo sapiens 2008 Streptococcus pneumoniae Streptococcus pneumoniae ERS707817 SC 2012 2015-10-14T08:10:50.250 2044468 91.77 1313 2057 Streptococcus pneumoniae 2024-02-06T15:57:14.000 2044468 414423 2044463 NP Homo sapiens Carriage from large multi-isolate project ST7105 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901266015.1 type NP 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAASLU000000000.1 2015-10-13T13:59:47Z GCA_901266015.1 haploid public GPS_ZA_carriage_SP1383-sc-2278062 85.5 17 2018-03-10T20:09:57 GCA_053203845.1 810552 49 17059_8#55 GPS_ZA_carriage_SP1383-sc-2278062 South Africa 17059_8#55 SAMEA3353462 1313 Generic.1.0 85.5 SRA category_na live 2019-04-18T15:56:55Z GPSC92 PRJEB3084 SC SC 17 2278062 2019-04-18T15:56:55Z 2015-10-13T00:00:00.000 31083 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAASLU01 2012 GPSC92 substr. ST7105 2015-10-13T13:59:47Z Prokka current 17 GPS_ZA_carriage_SP1383-sc-2278062 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAASLU01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-11 GPSC92 species_match 98.74 SAMEA3353441 3 Streptococcus pneumoniae 90.75 Streptococcus pneumoniae PRJEB3084 3 na 338989 type Streptococcus pneumoniae 2019-05-14 7C 7C Homo sapiens 2098 Streptococcus pneumoniae Streptococcus pneumoniae ERS707796 SC 2012 2015-10-14T08:10:49.590 2122871 90.75 1313 2150 Streptococcus pneumoniae 2024-02-06T15:57:14.000 2122902 338989 2122862 NP Homo sapiens Carriage from large multi-isolate project ST4956 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901264815.1 type NP 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAASHG000000000.1 2015-10-13T13:59:17Z GCA_901264815.1 haploid public GPS_ZA_carriage_SP1373-sc-2278041 87.79 23 2018-03-10T20:09:56 GCA_053203845.1 839641 52 17059_8#45 GPS_ZA_carriage_SP1373-sc-2278041 South Africa 17059_8#45 SAMEA3353441 1313 Generic.1.0 87.79 SRA category_na live 2019-04-18T15:56:55Z GPSC93 PRJEB3084 SC SC 22 2278041 2019-04-18T15:56:55Z 2015-10-13T00:00:00.000 30015 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAASHG01 2012 GPSC93 substr. ST4956 2015-10-13T13:59:17Z Prokka current 22 GPS_ZA_carriage_SP1373-sc-2278041 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAASHG01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-14 GPSC93 species_match 98.76 SAMEA3353215 3 Streptococcus pneumoniae 92.16 Streptococcus pneumoniae PRJEB3084 3 na 318828 type Streptococcus pneumoniae 2019-05-12 7C 7C Homo sapiens 2038 Streptococcus pneumoniae Streptococcus pneumoniae ERS707570 SC 2012 2015-10-14T08:10:41.410 2080336 92.16 1313 2090 Streptococcus pneumoniae 2024-02-06T15:57:07.000 2080477 318828 2080333 NP Homo sapiens Carriage from large multi-isolate project ST4956 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901249865.1 type NP 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAQBQ000000000.1 2015-10-13T13:58:53Z GCA_901249865.1 haploid public GPS_ZA_carriage_SP1262-sc-2277813 87.37 22 2018-03-10T20:09:46 GCA_053203845.1 823257 52 17059_7#28 GPS_ZA_carriage_SP1262-sc-2277813 South Africa 17059_7#28 SAMEA3353215 1313 Generic.1.0 87.37 SRA category_na live 2019-04-18T15:56:53Z GPSC93 PRJEB3084 SC SC 21 2277813 2019-04-18T15:56:53Z 2015-10-13T00:00:00.000 30801 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAQBQ01 2012 GPSC93 substr. ST4956 2015-10-13T13:58:53Z Prokka current 21 GPS_ZA_carriage_SP1262-sc-2277813 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAQBQ01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-12 GPSC93 species_match 98.76 SAMEA2627263 4 Streptococcus pneumoniae 90.36 Streptococcus pneumoniae PRJEB3084 4 na 265959 type Streptococcus pneumoniae 2019-05-22 7C 7C Homo sapiens 2174 Streptococcus pneumoniae Streptococcus pneumoniae ERS497162 SC 2008 2015-01-29T08:36:44.863 2156249 90.36 1313 2220 Streptococcus pneumoniae 2024-02-06T15:53:22.000 2163974 265959 2156247 blood Homo sapiens IPD from large multi-isolate project ST4104 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901277825.1 type blood 98.58 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAUFI000000000.1 2015-01-08T09:39:41Z GCA_901277825.1 haploid public GPS_GM_0432-sc-2003193 88.79 70 2018-03-10T19:27:20 GCA_053203845.1 852138 46 14410_6#84 GPS_GM_0432-sc-2003193 Gambia 14410_6#84 SAMEA2627263 1313 Generic.1.0 88.79 SRA category_na live 2019-04-18T15:39:00Z GPSC5 PRJEB3084 SC SC 39 2003193 2019-04-18T15:39:00Z 2015-01-08T00:00:00.000 GPS_GM_0432 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAUFI01 2008 GPSC5 substr. ST4104 2015-01-08T09:39:41Z Prokka current 39 GPS_GM_0432-sc-2003193 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAUFI01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-22 GPSC5 species_match 98.58 SAMEA2814077 3 Streptococcus pneumoniae 92.42 Streptococcus pneumoniae PRJEB3084 4 na 289060 type Streptococcus pneumoniae 2019-05-12 7C 7C Homo sapiens 2085 Streptococcus pneumoniae Streptococcus pneumoniae ERS566445 SC 2012 2015-03-04T08:09:39.380 2101886 92.42 1313 2130 Streptococcus pneumoniae 2024-02-06T15:56:11.000 2104856 210835 2101886 blood Homo sapiens IPD from large multi-isolate project ST4956 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901331095.1 type blood 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABCAK000000000.1 2015-03-03T09:52:28Z GCA_901331095.1 haploid public GPS_ZA_2359-sc-2022561 88.52 29 2018-03-10T19:37:43 GCA_053203845.1 831609 45 14913_4#32 GPS_ZA_2359-sc-2022561 South Africa 14913_4#32 SAMEA2814077 1313 Generic.1.0 88.52 SRA category_na live 2019-04-18T15:56:40Z GPSC93 PRJEB3084 SC SC 19 2022561 2019-04-18T15:56:40Z 2015-03-03T00:00:00.000 36124 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABCAK01 2012 GPSC93 substr. ST4956 2015-03-03T09:52:28Z Prokka current 19 GPS_ZA_2359-sc-2022561 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABCAK01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-12 GPSC93 species_match 98.74 SAMEA3353169 3 Streptococcus pneumoniae 91.73 Streptococcus pneumoniae PRJEB3084 3 na 208917 type Streptococcus pneumoniae 2019-05-12 7C 7C Homo sapiens 2055 Streptococcus pneumoniae Streptococcus pneumoniae ERS707524 SC 2012 2015-10-14T08:10:39.086 2089162 91.73 1313 2107 Streptococcus pneumoniae 2024-02-06T15:57:05.000 2089162 208917 2089162 NP Homo sapiens Carriage from large multi-isolate project ST8838 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901247375.1 type NP 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAPSA000000000.1 2015-10-13T13:59:27Z GCA_901247375.1 haploid public GPS_ZA_carriage_SP1239-sc-2277767 87.33 25 2018-03-10T20:09:44 GCA_053203845.1 825912 52 17059_7#5 GPS_ZA_carriage_SP1239-sc-2277767 South Africa 17059_7#5 SAMEA3353169 1313 Generic.1.0 87.33 SRA category_na live 2019-04-18T15:56:53Z GPSC93 PRJEB3084 SC SC 25 2277767 2019-04-18T15:56:53Z 2015-10-13T00:00:00.000 30888 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAPSA01 2012 GPSC93 substr. ST8838 2015-10-13T13:59:27Z Prokka current 25 GPS_ZA_carriage_SP1239-sc-2277767 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAPSA01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-12 GPSC93 species_match 98.78 SAMEA2814423 4 Streptococcus pneumoniae 91.55 Streptococcus pneumoniae PRJEB3084 5 na 193100 type Streptococcus pneumoniae 2019-05-14 7C 7C Homo sapiens 2105 Streptococcus pneumoniae Streptococcus pneumoniae ERS566791 SC 2013 2015-03-04T08:09:53.680 2120171 91.55 1313 2151 Streptococcus pneumoniae 2024-02-06T15:56:24.000 2123717 164773 2120171 blood Homo sapiens IPD from large multi-isolate project ST8838 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901338265.1 type blood 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABDCA000000000.1 2015-03-03T09:52:28Z GCA_901338265.1 haploid public GPS_ZA_2635-sc-2138218 88.46 27 2018-03-10T19:37:59 GCA_053203845.1 838625 46 14913_5#23 GPS_ZA_2635-sc-2138218 South Africa 14913_5#23 SAMEA2814423 1313 Generic.1.0 88.46 SRA category_na live 2019-04-18T15:56:43Z GPSC93 PRJEB3084 SC SC 14 2138218 2019-04-18T15:56:43Z 2015-03-03T00:00:00.000 40165 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABDCA01 2013 GPSC93 substr. ST8838 2015-03-03T09:52:28Z Prokka current 14 GPS_ZA_2635-sc-2138218 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABDCA01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-14 GPSC93 species_match 98.74 SAMEA3353467 4 Streptococcus pneumoniae 88.22 Streptococcus pneumoniae PRJEB3084 4 na 160088 type Streptococcus pneumoniae 2019-05-14 7C 7C Homo sapiens 2108 Streptococcus pneumoniae Streptococcus pneumoniae ERS707822 SC 2012 2015-10-14T08:10:50.390 2099121 88.22 1313 2161 Streptococcus pneumoniae 2024-02-06T15:57:15.000 2099121 160088 2099121 NP Homo sapiens Carriage from large multi-isolate project ST1535 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901266315.1 type NP 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAASMT000000000.1 2015-10-13T13:59:38Z GCA_901266315.1 haploid public GPS_ZA_carriage_SP1385-sc-2278067 87.73 24 2018-03-10T20:09:57 GCA_001457635.1 831202 53 17059_8#57 GPS_ZA_carriage_SP1385-sc-2278067 South Africa 17059_8#57 SAMEA3353467 1313 Generic.1.0 87.73 SRA category_na live 2019-04-18T15:56:55Z GPSC5 PRJEB3084 SC SC 24 2278067 2019-04-18T15:56:55Z 2015-10-13T00:00:00.000 31839 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAASMT01 2012 GPSC5 substr. ST1535 2015-10-13T13:59:38Z Prokka current 24 GPS_ZA_carriage_SP1385-sc-2278067 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAASMT01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-14 GPSC5 species_match 98.71 SAMEA2797247 3 Streptococcus pneumoniae 94.19 Streptococcus pneumoniae PRJEB3084 5 na 272076 type Streptococcus pneumoniae 2019-05-10 7C 7C Homo sapiens 1960 Streptococcus pneumoniae Streptococcus pneumoniae ERS558858 SC 2010 2015-02-09T18:12:31.503 2003529 94.19 1313 2006 Streptococcus pneumoniae 2024-02-06T15:57:51.000 2006623 140314 2003527 blood Homo sapiens IPD from large multi-isolate project ST7053 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901332495.1 type blood 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABCFQ000000000.1 2015-02-03T09:31:32Z GCA_901332495.1 haploid public GPS_US_PATH5424-sc-2139276 89.4 27 2018-03-10T19:34:51 GCA_001457635.1 795271 46 14723_3#79 GPS_US_PATH5424-sc-2139276 Mozambique 14723_3#79 SAMEA2797247 1313 Generic.1.0 89.4 SRA category_na live 2019-04-18T16:00:59Z GPSC92 PRJEB3084 SC SC 17 2139276 2019-04-18T16:00:59Z 2015-02-03T00:00:00.000 PATH5424 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABCFQ01 2010 GPSC92 substr. ST7053 2015-02-03T09:31:32Z Prokka current 17 GPS_US_PATH5424-sc-2139276 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABCFQ01 Scaffold SOURCE_DATABASE_GENBANK Mozambique 2019-05-10 GPSC92 species_match 98.74 SAMEA2814054 3 Streptococcus pneumoniae 92.09 Streptococcus pneumoniae PRJEB3084 6 na 280597 type Streptococcus pneumoniae 2019-05-12 7C 7C Homo sapiens 2039 Streptococcus pneumoniae Streptococcus pneumoniae ERS566422 SC 2012 2015-03-04T08:09:37.760 2075445 92.09 1313 2080 Streptococcus pneumoniae 2024-02-06T15:56:10.000 2078791 135648 2075437 blood Homo sapiens IPD from large multi-isolate project ST8838 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901276635.1 type blood 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAUAS000000000.1 2015-03-03T09:52:28Z GCA_901276635.1 haploid public GPS_ZA_2352-sc-2022538 87.1 37 2018-03-10T19:37:42 GCA_053203845.1 821112 41 14913_4#25 GPS_ZA_2352-sc-2022538 South Africa 14913_4#25 SAMEA2814054 1313 Generic.1.0 87.1 SRA category_na live 2019-04-18T15:56:40Z GPSC93 PRJEB3084 SC SC 24 2022538 2019-04-18T15:56:40Z 2015-03-03T00:00:00.000 35219 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAUAS01 2012 GPSC93 substr. ST8838 2015-03-03T09:52:28Z Prokka current 24 GPS_ZA_2352-sc-2022538 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAUAS01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-12 GPSC93 species_match 98.78 SAMEA3207046 3 Streptococcus pneumoniae 91.37 Streptococcus pneumoniae PRJEB3084 6 na 197709 type Streptococcus pneumoniae 2019-05-14 7C 7C Homo sapiens 2114 Streptococcus pneumoniae Streptococcus pneumoniae ERS639056 SC 2009 2015-06-17T09:06:59.393 2133916 91.37 1313 2163 Streptococcus pneumoniae 2024-02-06T15:56:42.000 2136210 133484 2133913 NP Homo sapiens Carriage from large multi-isolate project ST4956 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901244305.1 type NP 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAPGI000000000.1 2015-06-16T09:36:17Z GCA_901244305.1 haploid public GPS_ZA_carriage_SP386-sc-2191983 88.85 30 2018-03-10T19:54:06 GCA_053203845.1 844116 49 15874_1#41 GPS_ZA_carriage_SP386-sc-2191983 South Africa 15874_1#41 SAMEA3207046 1313 Generic.1.0 88.85 SRA category_na live 2019-04-18T15:56:48Z GPSC93 PRJEB3084 SC SC 22 2191983 2019-04-18T15:56:48Z 2015-06-16T00:00:00.000 1453 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAPGI01 2009 GPSC93 substr. ST4956 2015-06-16T09:36:17Z Prokka current 22 GPS_ZA_carriage_SP386-sc-2191983 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAPGI01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-14 GPSC93 species_match 98.7 SAMEA3206716 4 Streptococcus pneumoniae 90.92 Streptococcus pneumoniae PRJEB3084 6 na 192007 type Streptococcus pneumoniae 2019-05-15 7C 7C Homo sapiens 2093 Streptococcus pneumoniae Streptococcus pneumoniae ERS638726 SC 2009 2015-05-27T08:08:13.556 2113897 90.92 1313 2138 Streptococcus pneumoniae 2024-02-06T15:56:32.000 2117676 128942 2113896 NP Homo sapiens Carriage from large multi-isolate project ST4956 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901321085.1 type NP 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABANY000000000.1 2015-05-26T09:45:13Z GCA_901321085.1 haploid public GPS_ZA_carriage_SP36-sc-2191649 87.59 42 2018-03-10T19:50:46 GCA_053203845.1 836558 45 15731_8#91 GPS_ZA_carriage_SP36-sc-2191649 South Africa 15731_8#91 SAMEA3206716 1313 Generic.1.0 87.59 SRA category_na live 2019-04-18T15:56:45Z GPSC93 PRJEB3084 SC SC 30 2191649 2019-04-18T15:56:45Z 2015-05-26T00:00:00.000 371 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABANY01 2009 GPSC93 substr. ST4956 2015-05-26T09:45:13Z Prokka current 30 GPS_ZA_carriage_SP36-sc-2191649 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABANY01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-15 GPSC93 species_match 98.76 SAMEA3171605 4 Streptococcus pneumoniae 93.27 Streptococcus pneumoniae PRJEB3084 6 na 263852 type Streptococcus pneumoniae 2019-05-10 7C 7C Homo sapiens 1951 Streptococcus pneumoniae Streptococcus pneumoniae ERS625996 SC 2014 2015-05-07T17:09:25.930 2006512 93.27 1313 1998 Streptococcus pneumoniae 2024-02-06T15:53:04.000 2008938 125673 2006512 NP swab Homo sapiens carriage from large multi-isolate project ST10587 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901249025.1 type NP swab 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAPYM000000000.1 2015-05-06T09:17:01Z GCA_901249025.1 haploid public GPS_MW_153621-sc-2139999 85.28 31 2018-03-10T19:46:48 GCA_053203845.1 796376 47 15531_4#6 GPS_MW_153621-sc-2139999 Malawi 15531_4#6 SAMEA3171605 1313 Generic.1.0 85.28 SRA category_na live 2019-04-18T15:32:41Z GPSC92 PRJEB3084 SC SC 22 2139999 2019-04-18T15:32:41Z 2015-05-06T00:00:00.000 GPS_MW_153621 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAPYM01 2014 GPSC92 substr. ST10587 2015-05-06T09:17:01Z Prokka current 22 GPS_MW_153621-sc-2139999 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAPYM01 Scaffold SOURCE_DATABASE_GENBANK Malawi 2019-05-10 GPSC92 species_match 98.77 SAMEA3208878 4 Streptococcus pneumoniae 94.14 Streptococcus pneumoniae PRJEB3084 6 na 240445 type Streptococcus pneumoniae 2019-05-11 7C 7C Homo sapiens 1951 Streptococcus pneumoniae Streptococcus pneumoniae ERS639980 SC 2013 2015-06-24T09:08:49.063 2000390 94.14 1313 2000 Streptococcus pneumoniae 2024-02-06T15:56:58.000 2005750 125317 2000389 NP Homo sapiens Carriage from large multi-isolate project ST7053 EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901274615.1 type NP 98.74 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAATSZ000000000.1 2015-06-23T09:53:00Z GCA_901274615.1 haploid public GPS_ZA_carriage_SP873-sc-2205014 89.2 47 2018-03-10T19:55:03 GCA_001457635.1 794285 49 15995_1#138 GPS_ZA_carriage_SP873-sc-2205014 South Africa 15995_1#138 SAMEA3208878 1313 Generic.1.0 89.2 SRA category_na live 2019-04-18T15:56:51Z GPSC92 PRJEB3084 SC SC 29 2205014 2019-04-18T15:56:51Z 2015-06-23T00:00:00.000 40423 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAATSZ01 2013 GPSC92 substr. ST7053 2015-06-23T09:53:00Z Prokka current 29 GPS_ZA_carriage_SP873-sc-2205014 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAATSZ01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-11 GPSC92 species_match 98.74 SAMEA3207232 2 Streptococcus pneumoniae 92.61 Streptococcus pneumoniae PRJEB3084 5 na 478187 type Streptococcus pneumoniae 2019-05-11 7C 7C Homo sapiens 2025 Streptococcus pneumoniae Streptococcus pneumoniae ERS639242 SC 2011 2015-06-10T08:09:01.453 2068349 92.61 1313 2075 Streptococcus pneumoniae 2024-02-06T15:56:48.000 2072032 122058 2068349 NP Homo sapiens Carriage from large multi-isolate project ST4956 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901221365.1 type NP 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAALVV000000000.1 2015-06-09T14:25:23Z GCA_901221365.1 haploid public GPS_ZA_carriage_SP623-sc-2192171 87.29 31 2018-03-10T19:53:39 GCA_053203845.1 818184 50 15841_2#37 GPS_ZA_carriage_SP623-sc-2192171 South Africa 15841_2#37 SAMEA3207232 1313 Generic.1.0 87.29 SRA category_na live 2019-04-18T15:56:49Z GPSC93 PRJEB3084 SC SC 19 2192171 2019-04-18T15:56:49Z 2015-06-09T00:00:00.000 21280 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAALVV01 2011 GPSC93 substr. ST4956 2015-06-09T14:25:23Z Prokka current 19 GPS_ZA_carriage_SP623-sc-2192171 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAALVV01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-11 GPSC93 species_match 98.77 SAMEA3309802 4 Streptococcus pneumoniae 92.1 Streptococcus pneumoniae PRJEB3084 4 suppressed na 123187 type Streptococcus pneumoniae 2019-05-14 7C 7C Homo sapiens 2063 Streptococcus pneumoniae Streptococcus pneumoniae ERS686264 SC 2009 2015-08-19T08:07:02.373 2083039 92.1 1313 2114 Streptococcus pneumoniae 2024-02-06T15:54:10.000 2083056 121748 2083038 NP swab Homo sapiens Carriage from large multi-isolate project ST4104 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901234235.1 type NP swab 98.62 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANTR000000000.1 2015-08-18T09:03:51Z GCA_901234235.1 haploid public GPS_GM_1820-sc-2206617 87.43 29 2018-03-10T20:03:27 GCA_053203845.1 823485 51 16453_2#48 GPS_GM_1820-sc-2206617 Gambia 16453_2#48 SAMEA3309802 1313 GCF_901234235.1 Generic.1.0 87.43 SRA GCF_901234235.1 category_na live 2019-04-18T15:39:10Z GPSC5 PRJEB3084 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SC SC 28 2206617 2019-04-18T15:39:10Z 2015-08-18T00:00:00.000 4984 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANTR01 2009 GPSC5 substr. ST4104 2015-08-18T09:03:51Z Prokka current 28 GPS_GM_1820-sc-2206617 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANTR01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-14 GPSC5 species_match 98.62 SAMEA3309802 4 Streptococcus pneumoniae 92.1 Streptococcus pneumoniae PRJEB3084 4 current na Best-placed reference protein set; GeneMarkS-2+ 123187 type Streptococcus pneumoniae This record was removed by RefSeq staff. Please contact info@ncbi.nlm.nih.gov for further details. Reason: surveillance assembly 2019-05-23 7C 7C Homo sapiens 2025 Streptococcus pneumoniae Streptococcus pneumoniae ERS686264 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 2015-08-19T08:07:02.373 2083039 92.1 1313 2257 Streptococcus pneumoniae 2024-02-06T15:54:10.000 2083056 121748 NP swab Homo sapiens Carriage from large multi-isolate project 177 ST4104 EBI 100 GCA_053203845.1 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) SLX Streptococcus pneumoniae GCF_901234235.1 type NP swab 98.62 ERC000011 OK Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAANTR000000000.1 2015-08-18T09:03:51Z GCF_901234235.1 haploid public GPS_GM_1820-sc-2206617 87.43 29 2018-03-10T20:03:27 GCA_053203845.1 55 16453_2#48 GPS_GM_1820-sc-2206617 Gambia 16453_2#48 SAMEA3309802 1313 GCA_901234235.1 Generic.1.0 87.43 SRA GCA_901234235.1 category_na live 2019-04-18T15:39:10Z GPSC5 PRJEB3084 Annotation submitted by SC SC SC 28 2206617 2019-04-18T15:39:10Z 2015-08-18T00:00:00.000 4984 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAANTR01 2009 GPSC5 substr. ST4104 4.8 2015-08-18T09:03:51Z Prokka suppressed 28 GPS_GM_1820-sc-2206617 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAANTR01 Scaffold SOURCE_DATABASE_REFSEQ Gambia 2019-05-14 GPSC5 species_match 98.62 SAMEA2382582 9 Streptococcus pneumoniae 93.86 Streptococcus pneumoniae 1313 PRJEB4909 9 current na 76252 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1953 Streptococcus pneumoniae Streptococcus pneumoniae ERS408907 SC 2006/2012 v1.2.4 2014-07-03T08:07:00.986 98.16 1985455 93.86 1313 1998 2024-02-06T06:55:20.000 1987839 71645 1985448 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900026545.1 type CSF 98.74 ERC000011 OK 40 Streptococcus pneumoniae 9.04552 https://www.ncbi.nlm.nih.gov/nuccore/FCXL00000000.1 2014-07-02T15:07:58Z GCA_900026545.1 haploid public 2120097-sc-1869827 84.92 0.31 58 2015-08-10T19:42:10 GCA_053203845.1 790612 45 12673_6#37 2120097-sc-1869827 Netherlands 12673_6#37 SAMEA2382582 1313 GCF_900026545.1 Generic.1.0 84.92 SRA GCF_900026545.1 category_na live 2018-03-09T10:42:58Z 2842STDY5753122 PRJEB4909 GCF_900026545.1-RS_2026_01_25 SC SC 48 1869827 2018-03-09T10:42:58Z 2014-07-02T00:00:00.000 2120097 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCXL01 2006/2012 2842STDY5753122 2014-07-02T15:07:58Z Prokka current 48 2120097-sc-1869827 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCXL01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753122 species_match 98.74 SAMEA2382582 9 Streptococcus pneumoniae 93.86 Streptococcus pneumoniae 1313 PRJEB4909 9 current na Best-placed reference protein set; GeneMarkS-2+ 76252 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1827 Streptococcus pneumoniae Streptococcus pneumoniae ERS408907 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-03T08:07:00.986 98.16 1985455 93.86 1313 2066 2024-02-06T06:55:20.000 1987839 71645 1985448 CSF Homo sapiens Streptococcus pneumoniae Disease 188 EBI 100 GCA_053203845.1 GCF_900026545.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900026545.1 type CSF 98.74 ERC000011 OK 40 Streptococcus pneumoniae 9.04552 https://www.ncbi.nlm.nih.gov/nuccore/FCXL00000000.1 2014-07-02T15:07:58Z GCF_900026545.1 haploid public 2120097-sc-1869827 84.92 0.31 58 2015-08-10T19:42:10 GCA_053203845.1 790612 51 12673_6#37 2120097-sc-1869827 Netherlands 12673_6#37 SAMEA2382582 1313 GCA_900026545.1 Generic.1.0 84.92 SRA GCA_900026545.1 category_na live 2018-03-09T10:42:58Z 2842STDY5753122 PRJEB4909 Annotation submitted by SC SC SC 48 1869827 2018-03-09T10:42:58Z 2014-07-02T00:00:00.000 2120097 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCXL01 2006/2012 2842STDY5753122 6.10 2014-07-02T15:07:58Z Prokka current 48 2120097-sc-1869827 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCXL01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753122 species_match 98.74 SAMEA2238754 11 Streptococcus pneumoniae 93.9 Streptococcus pneumoniae 1313 PRJEB4909 11 current na 72957 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1954 Streptococcus pneumoniae Streptococcus pneumoniae ERS367566 SC 2006/2012 v1.2.4 2014-05-13T08:06:00.820 98.16 1989982 93.9 1313 2001 2024-02-06T05:04:21.000 1991583 69668 1989979 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900030505.1 type CSF 98.72 ERC000011 OK 40 Streptococcus pneumoniae 9.04552 https://www.ncbi.nlm.nih.gov/nuccore/FCPQ00000000.1 2014-05-12T16:58:20Z GCA_900030505.1 haploid public 2100261-sc-2013-11-05T12:01:52Z-1750117 85.16 0.31 59 2015-08-10T19:26:11 GCA_053203845.1 791869 47 12273_1#89 2100261-sc-2013-11-05T12:01:52Z-1750117 Netherlands 12273_1#89 SAMEA2238754 1313 GCF_900030505.1 Generic.1.0 85.16 SRA GCF_900030505.1 category_na live 2018-03-09T10:27:39Z 2842STDY5644128 PRJEB4909 GCF_900030505.1-RS_2025_09_28 SC SC 51 1750117 2018-03-09T10:27:39Z 2014-05-12T00:00:00.000 2100261 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCPQ01 2006/2012 2842STDY5644128 2014-05-12T16:58:20Z Prokka current 51 2100261-sc-2013-11-05T12:01:52Z-1750117 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCPQ01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644128 species_match 98.72 SAMEA2238754 11 Streptococcus pneumoniae 93.9 Streptococcus pneumoniae 1313 PRJEB4909 11 current na Best-placed reference protein set; GeneMarkS-2+ 72957 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1826 Streptococcus pneumoniae Streptococcus pneumoniae ERS367566 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-13T08:06:00.820 98.16 1989982 93.9 1313 2063 2024-02-06T05:04:21.000 1991583 69668 1989979 CSF Homo sapiens Streptococcus pneumoniae Disease 184 EBI 100 GCA_053203845.1 GCF_900030505.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900030505.1 type CSF 98.72 ERC000011 OK 40 Streptococcus pneumoniae 9.04552 https://www.ncbi.nlm.nih.gov/nuccore/FCPQ00000000.1 2014-05-12T16:58:20Z GCF_900030505.1 haploid public 2100261-sc-2013-11-05T12:01:52Z-1750117 85.16 0.31 59 2015-08-10T19:26:11 GCA_053203845.1 791869 53 12273_1#89 2100261-sc-2013-11-05T12:01:52Z-1750117 Netherlands 12273_1#89 SAMEA2238754 1313 GCA_900030505.1 Generic.1.0 85.16 SRA GCA_900030505.1 category_na live 2018-03-09T10:27:39Z 2842STDY5644128 PRJEB4909 Annotation submitted by SC SC SC 51 1750117 2018-03-09T10:27:39Z 2014-05-12T00:00:00.000 2100261 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCPQ01 2006/2012 2842STDY5644128 6.10 2014-05-12T16:58:20Z Prokka current 51 2100261-sc-2013-11-05T12:01:52Z-1750117 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCPQ01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644128 species_match 98.72 SAMEA2238993 8 Streptococcus pneumoniae 93.94 Streptococcus pneumoniae 1313 PRJEB4909 10 current na 71715 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1954 Streptococcus pneumoniae Streptococcus pneumoniae ERS367805 SC 2006/2012 v1.2.4 2014-05-07T08:35:12.910 97.49 1989230 93.94 1313 2001 2024-02-06T05:17:59.000 1991312 69222 1989221 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900024615.1 type CSF 98.73 ERC000011 OK 40 Streptococcus pneumoniae 4.26349 https://www.ncbi.nlm.nih.gov/nuccore/FCQV00000000.1 2014-03-18T09:35:29Z GCA_900024615.1 haploid public 981819-sc-2013-11-05T12:06:10Z-1750358 85.16 0.31 51 2015-08-10T19:24:36 GCA_053203845.1 791681 47 11861_4#47 981819-sc-2013-11-05T12:06:10Z-1750358 Netherlands 11861_4#47 SAMEA2238993 1313 GCF_900024615.1 Generic.1.0 85.16 SRA GCF_900024615.1 category_na live 2018-03-09T10:29:20Z 2842STDY5644369 PRJEB4909 GCF_900024615.1-RS_2025_09_21 SC SC 43 1750358 2018-03-09T10:29:20Z 2014-03-18T00:00:00.000 981819 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCQV01 2006/2012 2842STDY5644369 2014-03-18T09:35:29Z Prokka current 43 981819-sc-2013-11-05T12:06:10Z-1750358 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCQV01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644369 species_match 98.73 SAMEA2238993 8 Streptococcus pneumoniae 93.94 Streptococcus pneumoniae 1313 PRJEB4909 10 current na Best-placed reference protein set; GeneMarkS-2+ 71715 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1821 Streptococcus pneumoniae Streptococcus pneumoniae ERS367805 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:12.910 97.49 1989230 93.94 1313 2054 2024-02-06T05:17:59.000 1991312 69222 1989221 CSF Homo sapiens Streptococcus pneumoniae Disease 179 EBI 100 GCA_053203845.1 GCF_900024615.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900024615.1 type CSF 98.73 ERC000011 OK 40 Streptococcus pneumoniae 4.26349 https://www.ncbi.nlm.nih.gov/nuccore/FCQV00000000.1 2014-03-18T09:35:29Z GCF_900024615.1 haploid public 981819-sc-2013-11-05T12:06:10Z-1750358 85.16 0.31 51 2015-08-10T19:24:36 GCA_053203845.1 791681 54 11861_4#47 981819-sc-2013-11-05T12:06:10Z-1750358 Netherlands 11861_4#47 SAMEA2238993 1313 GCA_900024615.1 Generic.1.0 85.16 SRA GCA_900024615.1 category_na live 2018-03-09T10:29:20Z 2842STDY5644369 PRJEB4909 Annotation submitted by SC SC SC 43 1750358 2018-03-09T10:29:20Z 2014-03-18T00:00:00.000 981819 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCQV01 2006/2012 2842STDY5644369 6.10 2014-03-18T09:35:29Z Prokka current 43 981819-sc-2013-11-05T12:06:10Z-1750358 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCQV01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644369 species_match 98.73 SAMEA2382607 10 Streptococcus pneumoniae 94.0 Streptococcus pneumoniae 1313 PRJEB4909 10 current na 69491 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1952 Streptococcus pneumoniae Streptococcus pneumoniae ERS408932 SC 2006/2012 v1.2.4 2014-07-03T08:07:02.516 97.49 1988136 94.0 1313 1997 2024-02-06T06:44:09.000 1989520 69106 1988134 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900021745.1 type blood 98.73 ERC000011 OK 40 Streptococcus pneumoniae 4.26349 https://www.ncbi.nlm.nih.gov/nuccore/FCZW00000000.1 2014-07-02T15:07:58Z GCA_900021745.1 haploid public 981819_II-sc-1869852 85.17 0.31 52 2015-08-10T19:42:11 GCA_053203845.1 791205 45 12673_6#62 981819_II-sc-1869852 Netherlands 12673_6#62 SAMEA2382607 1313 GCF_900021745.1 Generic.1.0 85.17 SRA GCF_900021745.1 category_na live 2018-03-09T10:41:02Z 2842STDY5753147 PRJEB4909 GCF_900021745.1-RS_2026_01_25 SC SC 47 1869852 2018-03-09T10:41:02Z 2014-07-02T00:00:00.000 981819_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FCZW01 2006/2012 2842STDY5753147 2014-07-02T15:07:58Z Prokka current 47 981819_II-sc-1869852 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCZW01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753147 species_match 98.73 SAMEA2382607 10 Streptococcus pneumoniae 94.0 Streptococcus pneumoniae 1313 PRJEB4909 10 current na Best-placed reference protein set; GeneMarkS-2+ 69491 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1825 Streptococcus pneumoniae Streptococcus pneumoniae ERS408932 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-03T08:07:02.516 97.49 1988136 94.0 1313 2060 2024-02-06T06:44:09.000 1989520 69106 1988134 blood Homo sapiens Streptococcus pneumoniae Disease 182 EBI 100 GCA_053203845.1 GCF_900021745.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900021745.1 type blood 98.73 ERC000011 OK 40 Streptococcus pneumoniae 4.26349 https://www.ncbi.nlm.nih.gov/nuccore/FCZW00000000.1 2014-07-02T15:07:58Z GCF_900021745.1 haploid public 981819_II-sc-1869852 85.17 0.31 52 2015-08-10T19:42:11 GCA_053203845.1 791205 53 12673_6#62 981819_II-sc-1869852 Netherlands 12673_6#62 SAMEA2382607 1313 GCA_900021745.1 Generic.1.0 85.17 SRA GCA_900021745.1 category_na live 2018-03-09T10:41:02Z 2842STDY5753147 PRJEB4909 Annotation submitted by SC SC SC 47 1869852 2018-03-09T10:41:02Z 2014-07-02T00:00:00.000 981819_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FCZW01 2006/2012 2842STDY5753147 6.10 2014-07-02T15:07:58Z Prokka current 47 981819_II-sc-1869852 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCZW01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753147 species_match 98.73 SAMEA2238868 9 Streptococcus pneumoniae 94.63 Streptococcus pneumoniae 1313 PRJEB4909 12 current na 83189 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1952 Streptococcus pneumoniae Streptococcus pneumoniae ERS367680 SC 2006/2012 v1.2.4 2014-05-07T08:35:02.650 98.16 1987091 94.63 1313 1998 2024-02-06T05:06:49.000 1989755 67942 1987090 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900021695.1 type CSF 98.74 ERC000011 OK 40 Streptococcus pneumoniae 9.04552 https://www.ncbi.nlm.nih.gov/nuccore/FCVC00000000.1 2014-03-18T09:35:30Z GCA_900021695.1 haploid public 2110270-sc-2013-11-05T12:04:04Z-1750232 85.69 0.31 56 2015-08-10T19:24:30 GCA_053203845.1 791055 46 11861_3#14 2110270-sc-2013-11-05T12:04:04Z-1750232 Netherlands 11861_3#14 SAMEA2238868 1313 GCF_900021695.1 Generic.1.0 85.69 SRA GCF_900021695.1 category_na live 2018-03-09T10:27:58Z 2842STDY5644243 PRJEB4909 GCF_900021695.1-RS_2025_09_21 SC SC 47 1750232 2018-03-09T10:27:58Z 2014-03-18T00:00:00.000 2110270 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCVC01 2006/2012 2842STDY5644243 2014-03-18T09:35:30Z Prokka current 47 2110270-sc-2013-11-05T12:04:04Z-1750232 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCVC01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644243 species_match 98.74 SAMEA2238868 9 Streptococcus pneumoniae 94.63 Streptococcus pneumoniae 1313 PRJEB4909 12 current na Best-placed reference protein set; GeneMarkS-2+ 83189 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1837 Streptococcus pneumoniae Streptococcus pneumoniae ERS367680 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:02.650 98.16 1987091 94.63 1313 2068 2024-02-06T05:06:49.000 1989755 67942 1987090 CSF Homo sapiens Streptococcus pneumoniae Disease 179 EBI 100 GCA_053203845.1 GCF_900021695.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900021695.1 type CSF 98.74 ERC000011 OK 40 Streptococcus pneumoniae 9.04552 https://www.ncbi.nlm.nih.gov/nuccore/FCVC00000000.1 2014-03-18T09:35:30Z GCF_900021695.1 haploid public 2110270-sc-2013-11-05T12:04:04Z-1750232 85.69 0.31 56 2015-08-10T19:24:30 GCA_053203845.1 791055 52 11861_3#14 2110270-sc-2013-11-05T12:04:04Z-1750232 Netherlands 11861_3#14 SAMEA2238868 1313 GCA_900021695.1 Generic.1.0 85.69 SRA GCA_900021695.1 category_na live 2018-03-09T10:27:58Z 2842STDY5644243 PRJEB4909 Annotation submitted by SC SC SC 47 1750232 2018-03-09T10:27:58Z 2014-03-18T00:00:00.000 2110270 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCVC01 2006/2012 2842STDY5644243 6.10 2014-03-18T09:35:30Z Prokka current 47 2110270-sc-2013-11-05T12:04:04Z-1750232 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCVC01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644243 species_match 98.74 SAMEA2335962 9 Streptococcus pneumoniae 94.05 Streptococcus pneumoniae 1313 PRJEB3084 11 current na 71567 type Streptococcus pneumoniae 2019-05-12 7F 7F species Homo sapiens 1948 Streptococcus pneumoniae Streptococcus pneumoniae ERS394156 SC 2009 v1.2.4 2014-05-20T08:07:31.006 98.16 1986897 94.05 1313 1993 Streptococcus pneumoniae 2024-02-06T15:54:53.000 1988523 67503 1986888 blood Homo sapiens Streptococcus pneumoniae IPD ST191 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900058955.2 type blood 98.74 ERC000011 OK 40 Streptococcus pneumoniae 9.04552 https://www.ncbi.nlm.nih.gov/nuccore/FHJL00000000.2 2014-05-19T10:21:06Z GCA_900058955.2 haploid public 2010205423-sc-1810890 85.15 0.31 54 2015-08-10T19:29:21 GCA_053203845.1 790499 45 12291_4#30 2010205423-sc-1810890 USA 12291_4#30 SAMEA2335962 1313 GCF_900058955.2 Generic.1.0 85.15 SRA GCF_900058955.2 category_na live 2019-04-18T15:39:20Z GPSC15 PRJEB3084 GCF_900058955.2-RS_2026_02_02 SC SC 48 1810890 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2010205423 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHJL02 2009 2245STDY5699055 2014-05-19T10:21:06Z Prokka current 48 2010205423-sc-1810890 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHJL02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC15 species_match 98.74 SAMEA2335962 9 Streptococcus pneumoniae 94.05 Streptococcus pneumoniae 1313 PRJEB3084 11 current na Best-placed reference protein set; GeneMarkS-2+ 71567 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-02 7F 7F species Homo sapiens 1828 Streptococcus pneumoniae Streptococcus pneumoniae ERS394156 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-05-20T08:07:31.006 98.16 1986897 94.05 1313 2056 Streptococcus pneumoniae 2024-02-06T15:54:53.000 1988523 67503 1986888 blood Homo sapiens Streptococcus pneumoniae IPD 176 ST191 EBI 100 GCA_053203845.1 GCF_900058955.2-RS_2026_02_02 SLX Streptococcus pneumoniae GCF_900058955.2 type blood 98.74 ERC000011 OK 40 Streptococcus pneumoniae 9.04552 https://www.ncbi.nlm.nih.gov/nuccore/FHJL00000000.2 2014-05-19T10:21:06Z GCF_900058955.2 haploid public 2010205423-sc-1810890 85.15 0.31 54 2015-08-10T19:29:21 GCA_053203845.1 790499 52 12291_4#30 2010205423-sc-1810890 USA 12291_4#30 SAMEA2335962 1313 GCA_900058955.2 Generic.1.0 85.15 SRA GCA_900058955.2 category_na live 2019-04-18T15:39:20Z GPSC15 PRJEB3084 Annotation submitted by SC SC SC 48 1810890 2019-04-18T15:39:20Z 2014-05-19T00:00:00.000 2010205423 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHJL02 2009 GPSC15 substr. ST191 6.10 2014-05-19T10:21:06Z Prokka current 48 2010205423-sc-1810890 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHJL02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC15 species_match 98.74 SAMEA2239155 8 Streptococcus pneumoniae 93.95 Streptococcus pneumoniae 1313 PRJEB4909 10 current na 78024 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1958 Streptococcus pneumoniae Streptococcus pneumoniae ERS367967 SC 2006/2012 v1.2.4 2014-05-07T08:35:24.206 98.16 1990147 93.95 1313 2003 2024-02-06T05:04:33.000 1992568 67147 1990147 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900021545.1 type CSF 98.73 ERC000011 OK 40 Streptococcus pneumoniae 9.04552 https://www.ncbi.nlm.nih.gov/nuccore/FDRC00000000.1 2014-03-18T09:35:29Z GCA_900021545.1 haploid public 2001014-sc-2013-11-05T12:08:52Z-1750526 85.21 0.31 54 2015-08-10T19:24:45 GCA_053203845.1 791944 45 11860_8#21 2001014-sc-2013-11-05T12:08:52Z-1750526 Netherlands 11860_8#21 SAMEA2239155 1313 GCF_900021545.1 Generic.1.0 85.21 SRA GCF_900021545.1 category_na live 2018-03-09T10:27:42Z 2842STDY5644537 PRJEB4909 GCF_900021545.1-RS_2026_01_25 SC SC 45 1750526 2018-03-09T10:27:42Z 2014-03-18T00:00:00.000 2001014 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRC01 2006/2012 2842STDY5644537 2014-03-18T09:35:29Z Prokka current 45 2001014-sc-2013-11-05T12:08:52Z-1750526 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRC01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644537 species_match 98.73 SAMEA2239155 8 Streptococcus pneumoniae 93.95 Streptococcus pneumoniae 1313 PRJEB4909 10 current na Best-placed reference protein set; GeneMarkS-2+ 78024 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1831 Streptococcus pneumoniae Streptococcus pneumoniae ERS367967 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:24.206 98.16 1990147 93.95 1313 2065 2024-02-06T05:04:33.000 1992568 67147 1990147 CSF Homo sapiens Streptococcus pneumoniae Disease 183 EBI 100 GCA_053203845.1 GCF_900021545.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900021545.1 type CSF 98.73 ERC000011 OK 40 Streptococcus pneumoniae 9.04552 https://www.ncbi.nlm.nih.gov/nuccore/FDRC00000000.1 2014-03-18T09:35:29Z GCF_900021545.1 haploid public 2001014-sc-2013-11-05T12:08:52Z-1750526 85.21 0.31 54 2015-08-10T19:24:45 GCA_053203845.1 791944 51 11860_8#21 2001014-sc-2013-11-05T12:08:52Z-1750526 Netherlands 11860_8#21 SAMEA2239155 1313 GCA_900021545.1 Generic.1.0 85.21 SRA GCA_900021545.1 category_na live 2018-03-09T10:27:42Z 2842STDY5644537 PRJEB4909 Annotation submitted by SC SC SC 45 1750526 2018-03-09T10:27:42Z 2014-03-18T00:00:00.000 2001014 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRC01 2006/2012 2842STDY5644537 6.10 2014-03-18T09:35:29Z Prokka current 45 2001014-sc-2013-11-05T12:08:52Z-1750526 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRC01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644537 species_match 98.73 SAMEA2238991 11 Streptococcus pneumoniae 93.99 Streptococcus pneumoniae 1313 PRJEB4909 12 current na 69653 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1949 Streptococcus pneumoniae Streptococcus pneumoniae ERS367803 SC 2006/2012 v1.2.4 2014-05-07T08:35:12.790 98.1 1986229 93.99 1313 1994 2024-02-06T05:13:12.000 1988526 66823 1986228 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900027215.1 type CSF 98.73 ERC000011 OK 40 Streptococcus pneumoniae 8.09807 https://www.ncbi.nlm.nih.gov/nuccore/FCYP00000000.1 2014-03-18T09:35:29Z GCA_900027215.1 haploid public 2121456-sc-2013-11-05T12:06:08Z-1750356 85.08 0.31 59 2015-08-10T19:24:36 GCA_053203845.1 790519 45 11861_4#45 2121456-sc-2013-11-05T12:06:08Z-1750356 Netherlands 11861_4#45 SAMEA2238991 1313 GCF_900027215.1 Generic.1.0 85.08 SRA GCF_900027215.1 category_na live 2018-03-09T10:28:41Z 2842STDY5644367 PRJEB4909 GCF_900027215.1-RS_2025_09_21 SC SC 48 1750356 2018-03-09T10:28:41Z 2014-03-18T00:00:00.000 2121456 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCYP01 2006/2012 2842STDY5644367 2014-03-18T09:35:29Z Prokka current 48 2121456-sc-2013-11-05T12:06:08Z-1750356 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCYP01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644367 species_match 98.73 SAMEA2238991 11 Streptococcus pneumoniae 93.99 Streptococcus pneumoniae 1313 PRJEB4909 12 current na Best-placed reference protein set; GeneMarkS-2+ 69653 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1825 Streptococcus pneumoniae Streptococcus pneumoniae ERS367803 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:12.790 98.1 1986229 93.99 1313 2058 2024-02-06T05:13:12.000 1988526 66823 1986228 CSF Homo sapiens Streptococcus pneumoniae Disease 182 EBI 100 GCA_053203845.1 GCF_900027215.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900027215.1 type CSF 98.73 ERC000011 OK 40 Streptococcus pneumoniae 8.09807 https://www.ncbi.nlm.nih.gov/nuccore/FCYP00000000.1 2014-03-18T09:35:29Z GCF_900027215.1 haploid public 2121456-sc-2013-11-05T12:06:08Z-1750356 85.08 0.31 59 2015-08-10T19:24:36 GCA_053203845.1 790519 51 11861_4#45 2121456-sc-2013-11-05T12:06:08Z-1750356 Netherlands 11861_4#45 SAMEA2238991 1313 GCA_900027215.1 Generic.1.0 85.08 SRA GCA_900027215.1 category_na live 2018-03-09T10:28:41Z 2842STDY5644367 PRJEB4909 Annotation submitted by SC SC SC 48 1750356 2018-03-09T10:28:41Z 2014-03-18T00:00:00.000 2121456 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCYP01 2006/2012 2842STDY5644367 6.10 2014-03-18T09:35:29Z Prokka current 48 2121456-sc-2013-11-05T12:06:08Z-1750356 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCYP01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644367 species_match 98.73 SAMEA2796736 10 Streptococcus pneumoniae 93.99 Streptococcus pneumoniae 1313 PRJEB3084 11 current na 71487 type Streptococcus pneumoniae 2019-05-12 7F 7F species Homo sapiens 1944 Streptococcus pneumoniae Streptococcus pneumoniae ERS558347 SC 2009 v1.2.4 2015-01-30T08:09:22.026 98.16 1986494 93.99 1313 1990 Streptococcus pneumoniae 2024-02-06T15:55:30.000 1989111 65187 1986493 blood Homo sapiens Streptococcus pneumoniae Pneumonia ST191 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900052775.2 type blood 98.74 ERC000011 OK 40 Streptococcus pneumoniae 9.04552 https://www.ncbi.nlm.nih.gov/nuccore/FHWA00000000.2 2015-01-27T09:20:53Z GCA_900052775.2 haploid public GPS_US_2009215911_R1-sc-2138720 85.09 0.31 62 2015-08-11T22:01:00 GCA_053203845.1 790569 46 14673_4#43 GPS_US_2009215911_R1-sc-2138720 USA 14673_4#43 SAMEA2796736 1313 GCF_900052775.2 Generic.1.0 85.09 SRA GCF_900052775.2 category_na live 2019-04-18T15:39:29Z GPSC15 PRJEB3084 GCF_900052775.2-RS_2026_02_04 SC SC 51 2138720 2019-04-18T15:39:29Z 2015-01-27T00:00:00.000 2009215911 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHWA02 2009 2245STDY5982762 2015-01-27T09:20:53Z Prokka current 51 GPS_US_2009215911_R1-sc-2138720 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHWA02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC15 species_match 98.74 SAMEA2796736 10 Streptococcus pneumoniae 93.99 Streptococcus pneumoniae 1313 PRJEB3084 11 current na Best-placed reference protein set; GeneMarkS-2+ 71487 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-04 7F 7F species Homo sapiens 1830 Streptococcus pneumoniae Streptococcus pneumoniae ERS558347 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2015-01-30T08:09:22.026 98.16 1986494 93.99 1313 2068 Streptococcus pneumoniae 2024-02-06T15:55:30.000 1989111 65187 1986493 blood Homo sapiens Streptococcus pneumoniae Pneumonia 185 ST191 EBI 100 GCA_053203845.1 GCF_900052775.2-RS_2026_02_04 SLX Streptococcus pneumoniae GCF_900052775.2 type blood 98.74 ERC000011 OK 40 Streptococcus pneumoniae 9.04552 https://www.ncbi.nlm.nih.gov/nuccore/FHWA00000000.2 2015-01-27T09:20:53Z GCF_900052775.2 haploid public GPS_US_2009215911_R1-sc-2138720 85.09 0.31 62 2015-08-11T22:01:00 GCA_053203845.1 790569 53 14673_4#43 GPS_US_2009215911_R1-sc-2138720 USA 14673_4#43 SAMEA2796736 1313 GCA_900052775.2 Generic.1.0 85.09 SRA GCA_900052775.2 category_na live 2019-04-18T15:39:29Z GPSC15 PRJEB3084 Annotation submitted by SC SC SC 51 2138720 2019-04-18T15:39:29Z 2015-01-27T00:00:00.000 2009215911 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHWA02 2009 GPSC15 substr. ST191 6.10 2015-01-27T09:20:53Z Prokka current 51 GPS_US_2009215911_R1-sc-2138720 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHWA02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC15 species_match 98.74 SAMEA2203783 10 Streptococcus pneumoniae 94.24 Streptococcus pneumoniae 1313 PRJEB3084 11 current na 71622 type Streptococcus pneumoniae 2019-05-12 7F 7F species Homo sapiens 1948 Streptococcus pneumoniae Streptococcus pneumoniae ERS356287 SC 2009 v1.2.4 2014-02-28T18:05:41.820 97.47 1981566 94.24 1313 1993 Streptococcus pneumoniae 2024-02-06T15:54:42.000 1984196 60648 1981566 blood Homo sapiens Streptococcus pneumoniae Bacteremia ST191 EBI 100 GCA_053203845.1 Annotation submitted by SC Streptococcus pneumoniae GCA_900033825.3 type blood 98.74 ERC000011 OK 40 Streptococcus pneumoniae 4.23148 https://www.ncbi.nlm.nih.gov/nuccore/FFRE00000000.2 2014-02-18T09:20:03Z GCA_900033825.3 haploid public 2009215893-sc-2013-10-09T11:49:21Z-1712372 85.1 0.31 57 2015-08-10T19:05:33 GCA_053203845.1 788560 45 11657_4#4 2009215893-sc-2013-10-09T11:49:21Z-1712372 USA 11657_4#4 SAMEA2203783 1313 GCF_900033825.3 Generic.1.0 85.1 SRA GCF_900033825.3 category_na live 2019-04-18T15:39:18Z GPSC15 PRJEB3084 GCF_900033825.3-RS_2026_02_08 SC SC 46 1712372 2019-04-18T15:39:18Z 2014-02-18T00:00:00.000 2009215893 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFRE02 2009 2245STDY5608922 2014-02-18T09:20:03Z current 46 2009215893-sc-2013-10-09T11:49:21Z-1712372 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFRE02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC15 species_match 98.74 SAMEA2203783 10 Streptococcus pneumoniae 94.24 Streptococcus pneumoniae 1313 PRJEB3084 11 current na Best-placed reference protein set; GeneMarkS-2+ 71622 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-08 7F 7F species Homo sapiens 1825 Streptococcus pneumoniae Streptococcus pneumoniae ERS356287 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-02-28T18:05:41.820 97.47 1981566 94.24 1313 2053 Streptococcus pneumoniae 2024-02-06T15:54:42.000 1984196 60648 1981566 blood Homo sapiens Streptococcus pneumoniae Bacteremia 177 ST191 EBI 100 GCA_053203845.1 GCF_900033825.3-RS_2026_02_08 Streptococcus pneumoniae GCF_900033825.3 type blood 98.74 ERC000011 OK 40 Streptococcus pneumoniae 4.23148 https://www.ncbi.nlm.nih.gov/nuccore/FFRE00000000.2 2014-02-18T09:20:03Z GCF_900033825.3 haploid public 2009215893-sc-2013-10-09T11:49:21Z-1712372 85.1 0.31 57 2015-08-10T19:05:33 GCA_053203845.1 788560 51 11657_4#4 2009215893-sc-2013-10-09T11:49:21Z-1712372 USA 11657_4#4 SAMEA2203783 1313 GCA_900033825.3 Generic.1.0 85.1 SRA GCA_900033825.3 category_na live 2019-04-18T15:39:18Z GPSC15 PRJEB3084 Annotation submitted by SC SC SC 46 1712372 2019-04-18T15:39:18Z 2014-02-18T00:00:00.000 2009215893 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFRE02 2009 GPSC15 substr. ST191 6.10 2014-02-18T09:20:03Z current 46 2009215893-sc-2013-10-09T11:49:21Z-1712372 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFRE02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC15 species_match 98.74 SAMEA1028925 4 Streptococcus pneumoniae 86.93 Streptococcus pneumoniae 1313 PRJEB2479 4 current na 173214 type Streptococcus pneumoniae 2015-07-13 9N 9N species Homo sapiens 2229 Streptococcus pneumoniae Streptococcus pneumoniae ERS022218 SC 2010-03-11 v1.2.4 2012-01-20T20:12:46.100 99.32 2186356 86.93 1313 2269 2024-02-06T09:04:16.000 2186377 173214 2186329 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001137585.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 89.3477 https://www.ncbi.nlm.nih.gov/nuccore/CLMR00000000.1 2012-01-05T09:56:37Z GCA_001137585.1 haploid public SMRU2708-sc-2011-01-27-1062921 90.03 0.31 53 2015-07-28T08:12:38 GCA_001457635.1 863424 40 6938_7#20 SMRU2708-sc-2011-01-27-1062921 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028925 1313 GCF_001137585.1 Generic.1.0 90.03 SRA GCF_001137585.1 category_na live 2018-03-09T12:10:43Z SMRU2708 PRJEB2479 GCF_001137585.1-RS_2026_02_07 SC SC 51 2018-03-09T12:10:43Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLMR01 2010-03-11 SMRU2708 2012-01-05T09:56:37Z Prokka current 51 SMRU2708-sc-2011-01-27-1062921 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLMR01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2708 species_match 98.72 SAMEA1028925 4 Streptococcus pneumoniae 86.93 Streptococcus pneumoniae 1313 PRJEB2479 4 current na Best-placed reference protein set; GeneMarkS-2+ 173214 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-07 9N 9N species Homo sapiens 2114 Streptococcus pneumoniae Streptococcus pneumoniae ERS022218 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-03-11 v1.2.4 2012-01-20T20:12:46.100 99.32 2186356 86.93 1313 2358 2024-02-06T09:04:16.000 2186377 173214 2186329 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 201 EBI 100 GCA_001457635.1 GCF_001137585.1-RS_2026_02_07 SLX Streptococcus pneumoniae GCF_001137585.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 89.3477 https://www.ncbi.nlm.nih.gov/nuccore/CLMR00000000.1 2012-01-05T09:56:37Z GCF_001137585.1 haploid public SMRU2708-sc-2011-01-27-1062921 90.03 0.31 53 2015-07-28T08:12:38 GCA_001457635.1 863424 43 6938_7#20 SMRU2708-sc-2011-01-27-1062921 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028925 1313 GCA_001137585.1 Generic.1.0 90.03 SRA GCA_001137585.1 category_na live 2018-03-09T12:10:43Z SMRU2708 PRJEB2479 Annotation submitted by SC SC SC 51 2018-03-09T12:10:43Z 2012-01-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLMR01 2010-03-11 SMRU2708 6.10 2012-01-05T09:56:37Z Prokka current 51 SMRU2708-sc-2011-01-27-1062921 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLMR01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2708 species_match 98.72 SAMEA1025463 8 Streptococcus pneumoniae 92.16 Streptococcus pneumoniae 1313 PRJEB2395 8 current na 93853 type Streptococcus pneumoniae 2015-07-18 9N 9N species Homo sapiens 2112 Streptococcus pneumoniae Streptococcus pneumoniae ERS021194 SC 2009-06-29 v1.2.4 2012-01-20T20:01:01.556 99.42 2093191 92.16 1313 2151 2024-02-05T16:21:15.000 2093191 93853 2093177 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001172765.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 93.88 https://www.ncbi.nlm.nih.gov/nuccore/CRUG00000000.1 2011-11-29T12:03:48Z GCA_001172765.1 haploid public SMRU1684-sc-2011-01-27-1061897 87.91 0.31 65 2015-07-28T08:11:55 GCA_053203845.1 829351 39 6805_5#4 SMRU1684-sc-2011-01-27-1061897 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025463 1313 GCF_001172765.1 Generic.1.0 87.91 SRA GCF_001172765.1 category_na live 2018-03-09T09:52:57Z SMRU1684 PRJEB2395 GCF_001172765.1-RS_2026_01_27 SC SC 65 2018-03-09T09:52:57Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRUG01 2009-06-29 SMRU1684 2011-11-29T12:03:48Z Prokka current 65 SMRU1684-sc-2011-01-27-1061897 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRUG01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1684 species_match 98.71 SAMEA1025463 8 Streptococcus pneumoniae 92.16 Streptococcus pneumoniae 1313 PRJEB2395 8 current na Best-placed reference protein set; GeneMarkS-2+ 93853 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-27 9N 9N species Homo sapiens 2013 Streptococcus pneumoniae Streptococcus pneumoniae ERS021194 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-06-29 v1.2.4 2012-01-20T20:01:01.556 99.42 2093191 92.16 1313 2238 2024-02-05T16:21:15.000 2093191 93853 2093177 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 183 EBI 100 GCA_053203845.1 GCF_001172765.1-RS_2026_01_27 SLX Streptococcus pneumoniae GCF_001172765.1 type nasopharynx 98.71 OK 39.5 Streptococcus pneumoniae 93.88 https://www.ncbi.nlm.nih.gov/nuccore/CRUG00000000.1 2011-11-29T12:03:48Z GCF_001172765.1 haploid public SMRU1684-sc-2011-01-27-1061897 87.91 0.31 65 2015-07-28T08:11:55 GCA_053203845.1 829351 42 6805_5#4 SMRU1684-sc-2011-01-27-1061897 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025463 1313 GCA_001172765.1 Generic.1.0 87.91 SRA GCA_001172765.1 category_na live 2018-03-09T09:52:57Z SMRU1684 PRJEB2395 Annotation submitted by SC SC SC 65 2018-03-09T09:52:57Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRUG01 2009-06-29 SMRU1684 6.10 2011-11-29T12:03:48Z Prokka current 65 SMRU1684-sc-2011-01-27-1061897 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRUG01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1684 species_match 98.71 SAMEA1026064 8 Streptococcus pneumoniae 91.69 Streptococcus pneumoniae 1313 PRJEB2397 8 current na 91996 type Streptococcus pneumoniae 2015-07-13 9L 9L species Homo sapiens 2129 Streptococcus pneumoniae Streptococcus pneumoniae ERS021477 SC 2009-10-08 v1.2.4 2012-01-20T20:04:05.010 99.42 2103133 91.69 1313 2168 2024-02-06T09:03:54.000 2103144 91996 2103105 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001170965.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 93.88 https://www.ncbi.nlm.nih.gov/nuccore/CKWH00000000.1 2011-12-05T16:07:37Z GCA_001170965.1 haploid public SMRU1967-sc-2011-01-27-1062180 87.87 0.52 62 2015-07-28T08:12:11 GCA_053203845.1 833228 39 6823_5#23 SMRU1967-sc-2011-01-27-1062180 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026064 1313 GCF_001170965.1 Generic.1.0 87.87 SRA GCF_001170965.1 category_na live 2018-03-09T12:04:15Z SMRU1967 PRJEB2397 GCF_001170965.1-RS_2026_01_31 SC SC 61 2018-03-09T12:04:15Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKWH01 2009-10-08 SMRU1967 2011-12-05T16:07:37Z Prokka current 61 SMRU1967-sc-2011-01-27-1062180 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKWH01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU1967 species_match 98.73 SAMEA1026064 8 Streptococcus pneumoniae 91.69 Streptococcus pneumoniae 1313 PRJEB2397 8 current na Best-placed reference protein set; GeneMarkS-2+ 91996 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-31 9L 9L species Homo sapiens 2040 Streptococcus pneumoniae Streptococcus pneumoniae ERS021477 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-10-08 v1.2.4 2012-01-20T20:04:05.010 99.42 2103133 91.69 1313 2271 2024-02-06T09:03:54.000 2103144 91996 2103105 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 189 EBI 100 GCA_053203845.1 GCF_001170965.1-RS_2026_01_31 SLX Streptococcus pneumoniae GCF_001170965.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 93.88 https://www.ncbi.nlm.nih.gov/nuccore/CKWH00000000.1 2011-12-05T16:07:37Z GCF_001170965.1 haploid public SMRU1967-sc-2011-01-27-1062180 87.87 0.52 62 2015-07-28T08:12:11 GCA_053203845.1 833228 42 6823_5#23 SMRU1967-sc-2011-01-27-1062180 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1026064 1313 GCA_001170965.1 Generic.1.0 87.87 SRA GCA_001170965.1 category_na live 2018-03-09T12:04:15Z SMRU1967 PRJEB2397 Annotation submitted by SC SC SC 61 2018-03-09T12:04:15Z 2011-12-05T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKWH01 2009-10-08 SMRU1967 6.10 2011-12-05T16:07:37Z Prokka current 61 SMRU1967-sc-2011-01-27-1062180 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKWH01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU1967 species_match 98.73 SAMEA1025156 10 Streptococcus pneumoniae 92.32 Streptococcus pneumoniae 1313 PRJEB2395 10 current na 84561 type Streptococcus pneumoniae 2015-07-18 9N 9N species Homo sapiens 2103 Streptococcus pneumoniae Streptococcus pneumoniae ERS020987 SC 2009-04-28 v1.2.4 2012-01-20T19:58:45.426 99.42 2085807 92.32 1313 2140 2024-02-05T16:14:43.000 2085829 84561 2085784 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001202195.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 93.88 https://www.ncbi.nlm.nih.gov/nuccore/CRIQ00000000.1 2011-11-15T17:01:00Z GCA_001202195.1 haploid public SMRU1477-sc-2011-01-27-1061690 87.75 0.31 69 2015-07-28T08:11:41 GCA_053203845.1 826559 37 6753_1#13 SMRU1477-sc-2011-01-27-1061690 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025156 1313 GCF_001202195.1 Generic.1.0 87.75 SRA GCF_001202195.1 category_na live 2018-03-09T09:52:53Z SMRU1477 PRJEB2395 GCF_001202195.1-RS_2026_01_24 SC SC 67 2018-03-09T09:52:53Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRIQ01 2009-04-28 SMRU1477 2011-11-15T17:01:00Z Prokka current 67 SMRU1477-sc-2011-01-27-1061690 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRIQ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1477 species_match 98.72 SAMEA1025156 10 Streptococcus pneumoniae 92.32 Streptococcus pneumoniae 1313 PRJEB2395 10 current na Best-placed reference protein set; GeneMarkS-2+ 84561 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-24 9N 9N species Homo sapiens 2020 Streptococcus pneumoniae Streptococcus pneumoniae ERS020987 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-28 v1.2.4 2012-01-20T19:58:45.426 99.42 2085807 92.32 1313 2239 2024-02-05T16:14:43.000 2085829 84561 2085784 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 179 EBI 100 GCA_053203845.1 GCF_001202195.1-RS_2026_01_24 SLX Streptococcus pneumoniae GCF_001202195.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 93.88 https://www.ncbi.nlm.nih.gov/nuccore/CRIQ00000000.1 2011-11-15T17:01:00Z GCF_001202195.1 haploid public SMRU1477-sc-2011-01-27-1061690 87.75 0.31 69 2015-07-28T08:11:41 GCA_053203845.1 826559 40 6753_1#13 SMRU1477-sc-2011-01-27-1061690 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025156 1313 GCA_001202195.1 Generic.1.0 87.75 SRA GCA_001202195.1 category_na live 2018-03-09T09:52:53Z SMRU1477 PRJEB2395 Annotation submitted by SC SC SC 67 2018-03-09T09:52:53Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRIQ01 2009-04-28 SMRU1477 6.10 2011-11-15T17:01:00Z Prokka current 67 SMRU1477-sc-2011-01-27-1061690 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRIQ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1477 species_match 98.72 SAMEA2239108 9 Streptococcus pneumoniae 93.99 Streptococcus pneumoniae 1313 PRJEB4909 10 current na 79451 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1956 Streptococcus pneumoniae Streptococcus pneumoniae ERS367920 SC 2006/2012 v1.2.4 2014-05-07T08:35:20.883 97.95 1989351 93.99 1313 2001 2024-02-06T05:03:02.000 1992375 78016 1989351 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900018795.1 type CSF 98.73 ERC000011 OK 40.0 Streptococcus pneumoniae 6.6577 https://www.ncbi.nlm.nih.gov/nuccore/FDRF00000000.1 2014-03-18T09:35:29Z GCA_900018795.1 haploid public 2000139-sc-2013-11-05T12:08:03Z-1750478 85.21 0.31 54 2018-03-10T18:56:57 GCA_053203845.1 791501 45 11860_7#69 2000139-sc-2013-11-05T12:08:03Z-1750478 Netherlands 11860_7#69 SAMEA2239108 1313 GCF_900018795.1 Generic.1.0 85.21 SRA GCF_900018795.1 category_na live 2018-03-09T10:27:29Z 2842STDY5644489 PRJEB4909 GCF_900018795.1-RS_2026_01_25 SC SC 44 1750478 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2000139 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRF01 2006/2012 2842STDY5644489 2014-03-18T09:35:29Z Prokka current 44 2000139-sc-2013-11-05T12:08:03Z-1750478 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRF01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644489 species_match 98.73 SAMEA2239108 9 Streptococcus pneumoniae 93.99 Streptococcus pneumoniae 1313 PRJEB4909 10 current na Best-placed reference protein set; GeneMarkS-2+ 79451 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1828 Streptococcus pneumoniae Streptococcus pneumoniae ERS367920 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:20.883 97.95 1989351 93.99 1313 2058 2024-02-06T05:03:02.000 1992375 78016 1989351 CSF Homo sapiens Streptococcus pneumoniae Disease 179 EBI 100 GCA_053203845.1 GCF_900018795.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900018795.1 type CSF 98.73 ERC000011 OK 40.0 Streptococcus pneumoniae 6.6577 https://www.ncbi.nlm.nih.gov/nuccore/FDRF00000000.1 2014-03-18T09:35:29Z GCF_900018795.1 haploid public 2000139-sc-2013-11-05T12:08:03Z-1750478 85.21 0.31 54 2018-03-10T18:56:57 GCA_053203845.1 791501 51 11860_7#69 2000139-sc-2013-11-05T12:08:03Z-1750478 Netherlands 11860_7#69 SAMEA2239108 1313 GCA_900018795.1 Generic.1.0 85.21 SRA GCA_900018795.1 category_na live 2018-03-09T10:27:29Z 2842STDY5644489 PRJEB4909 Annotation submitted by SC SC SC 44 1750478 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2000139 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRF01 2006/2012 2842STDY5644489 6.10 2014-03-18T09:35:29Z Prokka current 44 2000139-sc-2013-11-05T12:08:03Z-1750478 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRF01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644489 species_match 98.73 SAMEA1029228 12 Streptococcus pneumoniae 87.11 Streptococcus pneumoniae 1313 PRJEB2480 12 current na 73398 type Streptococcus pneumoniae 2015-07-14 9N 9N species Homo sapiens 2180 Streptococcus pneumoniae Streptococcus pneumoniae ERS022414 SC 2010-07-19 v1.2.4 2012-01-20T20:14:12.016 99.32 2171354 87.11 1313 2222 2024-02-06T09:02:27.000 2171484 72727 2171332 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001160565.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 89.3477 https://www.ncbi.nlm.nih.gov/nuccore/CMCA00000000.1 2012-01-16T15:10:27Z GCA_001160565.1 haploid public SMRU2904-sc-2011-01-27-1063117 89.6 0.66 93 2015-07-28T08:13:00 GCA_001457635.1 857646 42 7004_7#72 SMRU2904-sc-2011-01-27-1063117 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029228 1313 GCF_001160565.1 Generic.1.0 89.6 SRA GCF_001160565.1 category_na live 2018-03-09T11:44:18Z SMRU2904 PRJEB2480 GCF_001160565.1-RS_2026_02_05 SC SC 91 2018-03-09T11:44:18Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMCA01 2010-07-19 SMRU2904 2012-01-16T15:10:27Z Prokka current 91 SMRU2904-sc-2011-01-27-1063117 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMCA01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-14 SMRU2904 species_match 98.72 SAMEA1029228 12 Streptococcus pneumoniae 87.11 Streptococcus pneumoniae 1313 PRJEB2480 12 current na Best-placed reference protein set; GeneMarkS-2+ 73398 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-05 9N 9N species Homo sapiens 2106 Streptococcus pneumoniae Streptococcus pneumoniae ERS022414 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-07-19 v1.2.4 2012-01-20T20:14:12.016 99.32 2171354 87.11 1313 2336 2024-02-06T09:02:27.000 2171484 72727 2171332 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 186 EBI 100 GCA_001457635.1 GCF_001160565.1-RS_2026_02_05 SLX Streptococcus pneumoniae GCF_001160565.1 type nasopharynx 98.72 OK 39.5 Streptococcus pneumoniae 89.3477 https://www.ncbi.nlm.nih.gov/nuccore/CMCA00000000.1 2012-01-16T15:10:27Z GCF_001160565.1 haploid public SMRU2904-sc-2011-01-27-1063117 89.6 0.66 93 2015-07-28T08:13:00 GCA_001457635.1 857646 44 7004_7#72 SMRU2904-sc-2011-01-27-1063117 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029228 1313 GCA_001160565.1 Generic.1.0 89.6 SRA GCA_001160565.1 category_na live 2018-03-09T11:44:18Z SMRU2904 PRJEB2480 Annotation submitted by SC SC SC 91 2018-03-09T11:44:18Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CMCA01 2010-07-19 SMRU2904 6.10 2012-01-16T15:10:27Z Prokka current 91 SMRU2904-sc-2011-01-27-1063117 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CMCA01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-14 SMRU2904 species_match 98.72 SAMEA1023934 11 Streptococcus pneumoniae 92.5 Streptococcus pneumoniae 1313 PRJEB2357 11 current na 72665 type Streptococcus pneumoniae 2015-07-11 7F 7F species Homo sapiens 1973 Streptococcus pneumoniae Streptococcus pneumoniae ERS019585 SC 2008-06-03 v1.2.4 2012-01-20T19:45:49.200 99.31 2035414 92.5 1313 2013 2024-02-06T09:03:49.000 2035425 72665 2035409 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001139865.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKHZ00000000.1 2011-10-11T09:20:05Z GCA_001139865.1 haploid public SMRU427-sc-2011-01-27-1060616 89.19 0.31 70 2016-01-29T08:05:23 GCA_001457635.1 806701 40 6631_3#19 SMRU427-sc-2011-01-27-1060616 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023934 1313 GCF_001139865.1 Generic.1.0 89.19 SRA GCF_001139865.1 category_na live 2018-03-09T12:02:57Z SMRU427 PRJEB2357 GCF_001139865.1-RS_2026_01_07 SC SC 69 2018-03-09T12:02:57Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKHZ01 2008-06-03 7F 2011-10-11T09:20:05Z Prokka current 69 SMRU427-sc-2011-01-27-1060616 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKHZ01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU427 species_match 98.8 SAMEA1023934 11 Streptococcus pneumoniae 92.5 Streptococcus pneumoniae 1313 PRJEB2357 11 current na Best-placed reference protein set; GeneMarkS-2+ 72665 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-07 7F 7F species Homo sapiens 1927 Streptococcus pneumoniae Streptococcus pneumoniae ERS019585 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-06-03 v1.2.4 2012-01-20T19:45:49.200 99.31 2035414 92.5 1313 2122 2024-02-06T09:03:49.000 2035425 72665 2035409 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 152 EBI 100 GCA_001457635.1 GCF_001139865.1-RS_2026_01_07 SLX Streptococcus pneumoniae GCF_001139865.1 type nasopharynx 98.8 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/CKHZ00000000.1 2011-10-11T09:20:05Z GCF_001139865.1 haploid public SMRU427-sc-2011-01-27-1060616 89.19 0.31 70 2016-01-29T08:05:23 GCA_001457635.1 806701 43 6631_3#19 SMRU427-sc-2011-01-27-1060616 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023934 1313 GCA_001139865.1 Generic.1.0 89.19 SRA GCA_001139865.1 category_na live 2018-03-09T12:02:57Z SMRU427 PRJEB2357 Annotation submitted by SC SC SC 69 2018-03-09T12:02:57Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKHZ01 2008-06-03 SMRU427 6.10 2011-10-11T09:20:05Z Prokka current 69 SMRU427-sc-2011-01-27-1060616 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKHZ01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU427 species_match 98.8 SAMEA1028758 11 Streptococcus pneumoniae 87.13 Streptococcus pneumoniae 1313 PRJEB2479 11 current na 72303 type Streptococcus pneumoniae 2015-07-13 9N 9N species Homo sapiens 2192 Streptococcus pneumoniae Streptococcus pneumoniae ERS022135 SC 2009-12-28 v1.2.4 2012-01-20T20:12:00.850 99.32 2171874 87.13 1313 2232 2024-02-05T16:31:12.000 2171915 72303 2171847 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001161905.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 89.3477 https://www.ncbi.nlm.nih.gov/nuccore/CLUB00000000.1 2012-01-16T15:10:28Z GCA_001161905.1 haploid public SMRU2625-sc-2011-01-27-1062838 89.65 0.31 72 2015-07-28T08:12:56 GCA_001457635.1 857763 40 6972_5#9 SMRU2625-sc-2011-01-27-1062838 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028758 1313 GCF_001161905.1 Generic.1.0 89.65 SRA GCF_001161905.1 category_na live 2018-03-09T09:53:05Z SMRU2625 PRJEB2479 GCF_001161905.1-RS_2026_02_05 SC SC 69 2018-03-09T09:53:05Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLUB01 2009-12-28 SMRU2625 2012-01-16T15:10:28Z Prokka current 69 SMRU2625-sc-2011-01-27-1062838 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLUB01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2625 species_match 98.73 SAMEA1028758 11 Streptococcus pneumoniae 87.13 Streptococcus pneumoniae 1313 PRJEB2479 11 current na Best-placed reference protein set; GeneMarkS-2+ 72303 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-05 9N 9N species Homo sapiens 2104 Streptococcus pneumoniae Streptococcus pneumoniae ERS022135 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-12-28 v1.2.4 2012-01-20T20:12:00.850 99.32 2171874 87.13 1313 2336 2024-02-05T16:31:12.000 2171915 72303 2171847 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 187 EBI 100 GCA_001457635.1 GCF_001161905.1-RS_2026_02_05 SLX Streptococcus pneumoniae GCF_001161905.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 89.3477 https://www.ncbi.nlm.nih.gov/nuccore/CLUB00000000.1 2012-01-16T15:10:28Z GCF_001161905.1 haploid public SMRU2625-sc-2011-01-27-1062838 89.65 0.31 72 2015-07-28T08:12:56 GCA_001457635.1 857763 45 6972_5#9 SMRU2625-sc-2011-01-27-1062838 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1028758 1313 GCA_001161905.1 Generic.1.0 89.65 SRA GCA_001161905.1 category_na live 2018-03-09T09:53:05Z SMRU2625 PRJEB2479 Annotation submitted by SC SC SC 69 2018-03-09T09:53:05Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLUB01 2009-12-28 SMRU2625 6.10 2012-01-16T15:10:28Z Prokka current 69 SMRU2625-sc-2011-01-27-1062838 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLUB01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2625 species_match 98.73 SAMEA1025434 11 Streptococcus pneumoniae 87.3 Streptococcus pneumoniae 1313 PRJEB2395 11 current na 69269 type Streptococcus pneumoniae 2015-07-18 9N 9N species Homo sapiens 2180 Streptococcus pneumoniae Streptococcus pneumoniae ERS020967 SC 2009-04-21 v1.2.4 2012-01-20T19:58:32.676 99.32 2164462 87.3 1313 2223 2024-02-06T09:03:58.000 2164462 69269 2164445 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001204375.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 89.3477 https://www.ncbi.nlm.nih.gov/nuccore/CRSR00000000.1 2011-11-29T12:03:48Z GCA_001204375.1 haploid public SMRU1457-sc-2011-01-27-1061670 89.51 0.31 67 2015-07-28T08:11:53 GCA_001457635.1 855025 43 6805_3#17 SMRU1457-sc-2011-01-27-1061670 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025434 1313 GCF_001204375.1 Generic.1.0 89.51 SRA GCF_001204375.1 category_na live 2018-03-09T12:05:15Z SMRU1457 PRJEB2395 GCF_001204375.1-RS_2026_02_02 SC SC 67 2018-03-09T12:05:15Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRSR01 2009-04-21 SMRU1457 2011-11-29T12:03:48Z Prokka current 67 SMRU1457-sc-2011-01-27-1061670 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRSR01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1457 species_match 98.73 SAMEA1025434 11 Streptococcus pneumoniae 87.3 Streptococcus pneumoniae 1313 PRJEB2395 11 current na Best-placed reference protein set; GeneMarkS-2+ 69269 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-02 9N 9N species Homo sapiens 2097 Streptococcus pneumoniae Streptococcus pneumoniae ERS020967 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-21 v1.2.4 2012-01-20T19:58:32.676 99.32 2164462 87.3 1313 2319 2024-02-06T09:03:58.000 2164462 69269 2164445 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 176 EBI 100 GCA_001457635.1 GCF_001204375.1-RS_2026_02_02 SLX Streptococcus pneumoniae GCF_001204375.1 type nasopharynx 98.73 OK 39.5 Streptococcus pneumoniae 89.3477 https://www.ncbi.nlm.nih.gov/nuccore/CRSR00000000.1 2011-11-29T12:03:48Z GCF_001204375.1 haploid public SMRU1457-sc-2011-01-27-1061670 89.51 0.31 67 2015-07-28T08:11:53 GCA_001457635.1 855025 46 6805_3#17 SMRU1457-sc-2011-01-27-1061670 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025434 1313 GCA_001204375.1 Generic.1.0 89.51 SRA GCA_001204375.1 category_na live 2018-03-09T12:05:15Z SMRU1457 PRJEB2395 Annotation submitted by SC SC SC 67 2018-03-09T12:05:15Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRSR01 2009-04-21 SMRU1457 6.10 2011-11-29T12:03:48Z Prokka current 67 SMRU1457-sc-2011-01-27-1061670 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRSR01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1457 species_match 98.73 SAMEA1029033 12 Streptococcus pneumoniae 90.61 Streptococcus pneumoniae 1313 PRJEB2479 12 current na 69072 type Streptococcus pneumoniae 2015-07-13 9N 9N species Homo sapiens 2103 Streptococcus pneumoniae Streptococcus pneumoniae ERS022108 SC 2010-04-07 v1.2.4 2012-01-20T20:11:43.880 99.42 2090822 90.61 1313 2142 2024-02-05T16:31:25.000 2090837 69072 2090801 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001140425.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 93.88 https://www.ncbi.nlm.nih.gov/nuccore/CLSY00000000.1 2012-01-16T15:10:28Z GCA_001140425.1 haploid public SMRU2598-sc-2011-01-27-1062811 89.75 0.31 72 2015-07-28T08:12:54 GCA_001457635.1 828217 39 6972_4#6 SMRU2598-sc-2011-01-27-1062811 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029033 1313 GCF_001140425.1 Generic.1.0 89.75 SRA GCF_001140425.1 category_na live 2018-03-09T09:53:05Z SMRU2598 PRJEB2479 GCF_001140425.1-RS_2026_01_22 SC SC 71 2018-03-09T09:53:05Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLSY01 2010-04-07 SMRU2598 2012-01-16T15:10:28Z Prokka current 71 SMRU2598-sc-2011-01-27-1062811 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLSY01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-13 SMRU2598 species_match 98.75 SAMEA1029033 12 Streptococcus pneumoniae 90.61 Streptococcus pneumoniae 1313 PRJEB2479 12 current na Best-placed reference protein set; GeneMarkS-2+ 69072 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 9N 9N species Homo sapiens 2022 Streptococcus pneumoniae Streptococcus pneumoniae ERS022108 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-04-07 v1.2.4 2012-01-20T20:11:43.880 99.42 2090822 90.61 1313 2240 2024-02-05T16:31:25.000 2090837 69072 2090801 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 175 EBI 100 GCA_001457635.1 GCF_001140425.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_001140425.1 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 93.88 https://www.ncbi.nlm.nih.gov/nuccore/CLSY00000000.1 2012-01-16T15:10:28Z GCF_001140425.1 haploid public SMRU2598-sc-2011-01-27-1062811 89.75 0.31 72 2015-07-28T08:12:54 GCA_001457635.1 828217 43 6972_4#6 SMRU2598-sc-2011-01-27-1062811 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1029033 1313 GCA_001140425.1 Generic.1.0 89.75 SRA GCA_001140425.1 category_na live 2018-03-09T09:53:05Z SMRU2598 PRJEB2479 Annotation submitted by SC SC SC 71 2018-03-09T09:53:05Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CLSY01 2010-04-07 SMRU2598 6.10 2012-01-16T15:10:28Z Prokka current 71 SMRU2598-sc-2011-01-27-1062811 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CLSY01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-13 SMRU2598 species_match 98.75 SAMEA2238361 6 Streptococcus pneumoniae 92.99 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 139904 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2057 Streptococcus pneumoniae Streptococcus pneumoniae ERS367173 SC 2006/2012 v1.2.4 2014-05-07T08:34:21.453 99.42 2087740 92.99 1313 2103 2024-02-06T05:15:02.000 2091510 115476 2087739 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900022185.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 93.88 https://www.ncbi.nlm.nih.gov/nuccore/FDXH00000000.1 2014-03-18T09:35:30Z GCA_900022185.1 haploid public 2070237-sc-2013-11-05T11:55:10Z-1749719 88.47 0.31 44 2015-08-10T19:24:09 GCA_053203845.1 825929 46 11860_4#87 2070237-sc-2013-11-05T11:55:10Z-1749719 Netherlands 11860_4#87 SAMEA2238361 1313 GCF_900022185.1 Generic.1.0 88.47 SRA GCF_900022185.1 category_na live 2018-03-09T10:28:57Z 2842STDY5643730 PRJEB4909 GCF_900022185.1-RS_2025_09_28 SC SC 31 1749719 2018-03-09T10:28:57Z 2014-03-18T00:00:00.000 2070237 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDXH01 2006/2012 2842STDY5643730 2014-03-18T09:35:30Z Prokka current 31 2070237-sc-2013-11-05T11:55:10Z-1749719 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDXH01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643730 species_match 98.85 SAMEA2238361 6 Streptococcus pneumoniae 92.99 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 139904 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1950 Streptococcus pneumoniae Streptococcus pneumoniae ERS367173 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:21.453 99.42 2087740 92.99 1313 2160 2024-02-06T05:15:02.000 2091510 115476 2087739 CSF Homo sapiens Streptococcus pneumoniae Disease 160 EBI 100 GCA_053203845.1 GCF_900022185.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900022185.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 93.88 https://www.ncbi.nlm.nih.gov/nuccore/FDXH00000000.1 2014-03-18T09:35:30Z GCF_900022185.1 haploid public 2070237-sc-2013-11-05T11:55:10Z-1749719 88.47 0.31 44 2015-08-10T19:24:09 GCA_053203845.1 825929 50 11860_4#87 2070237-sc-2013-11-05T11:55:10Z-1749719 Netherlands 11860_4#87 SAMEA2238361 1313 GCA_900022185.1 Generic.1.0 88.47 SRA GCA_900022185.1 category_na live 2018-03-09T10:28:57Z 2842STDY5643730 PRJEB4909 Annotation submitted by SC SC SC 31 1749719 2018-03-09T10:28:57Z 2014-03-18T00:00:00.000 2070237 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDXH01 2006/2012 2842STDY5643730 6.10 2014-03-18T09:35:30Z Prokka current 31 2070237-sc-2013-11-05T11:55:10Z-1749719 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDXH01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643730 species_match 98.85 SAMEA2238865 6 Streptococcus pneumoniae 93.23 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 136069 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2056 Streptococcus pneumoniae Streptococcus pneumoniae ERS367677 SC 2006/2012 v1.2.4 2014-05-07T08:35:02.466 99.47 2083939 93.23 1313 2103 2024-02-06T05:06:47.000 2087577 108991 2083939 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900030005.1 type CSF 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FCUZ00000000.1 2014-03-18T09:35:30Z GCA_900030005.1 haploid public 2110192-sc-2013-11-05T12:04:01Z-1750229 88.54 0.62 41 2015-08-10T19:24:29 GCA_053203845.1 824728 47 11861_3#11 2110192-sc-2013-11-05T12:04:01Z-1750229 Netherlands 11861_3#11 SAMEA2238865 1313 GCF_900030005.1 Generic.1.0 88.54 SRA GCF_900030005.1 category_na live 2018-03-09T10:27:58Z 2842STDY5644240 PRJEB4909 GCF_900030005.1-RS_2025_12_21 SC SC 28 1750229 2018-03-09T10:27:58Z 2014-03-18T00:00:00.000 2110192 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUZ01 2006/2012 2842STDY5644240 2014-03-18T09:35:30Z Prokka current 28 2110192-sc-2013-11-05T12:04:01Z-1750229 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUZ01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644240 species_match 98.87 SAMEA2238865 6 Streptococcus pneumoniae 93.23 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 136069 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-21 species Homo sapiens 1938 Streptococcus pneumoniae Streptococcus pneumoniae ERS367677 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:02.466 99.47 2083939 93.23 1313 2153 2024-02-06T05:06:47.000 2087577 108991 2083939 CSF Homo sapiens Streptococcus pneumoniae Disease 164 EBI 100 GCA_053203845.1 GCF_900030005.1-RS_2025_12_21 SLX Streptococcus pneumoniae GCF_900030005.1 type CSF 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FCUZ00000000.1 2014-03-18T09:35:30Z GCF_900030005.1 haploid public 2110192-sc-2013-11-05T12:04:01Z-1750229 88.54 0.62 41 2015-08-10T19:24:29 GCA_053203845.1 824728 51 11861_3#11 2110192-sc-2013-11-05T12:04:01Z-1750229 Netherlands 11861_3#11 SAMEA2238865 1313 GCA_900030005.1 Generic.1.0 88.54 SRA GCA_900030005.1 category_na live 2018-03-09T10:27:58Z 2842STDY5644240 PRJEB4909 Annotation submitted by SC SC SC 28 1750229 2018-03-09T10:27:58Z 2014-03-18T00:00:00.000 2110192 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUZ01 2006/2012 2842STDY5644240 6.10 2014-03-18T09:35:30Z Prokka current 28 2110192-sc-2013-11-05T12:04:01Z-1750229 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUZ01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644240 species_match 98.87 SAMEA2204010 4 Streptococcus pneumoniae 92.47 Streptococcus pneumoniae 1313 PRJEB3084 6 current na 200089 type Streptococcus pneumoniae 2019-05-13 9N 9N species Homo sapiens 2025 Streptococcus pneumoniae Streptococcus pneumoniae ERS356521 SC 2009 v1.2.4 2014-02-28T18:05:56.853 99.34 2079117 92.47 1313 2072 Streptococcus pneumoniae 2024-02-06T15:54:52.000 2083847 107552 2079116 CSF Homo sapiens Streptococcus pneumoniae Meningitis ST66 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900053515.2 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 89.783 https://www.ncbi.nlm.nih.gov/nuccore/FHIE00000000.2 2014-02-18T09:19:59Z GCA_900053515.2 haploid public 2009215888-sc-2013-10-09T11:53:34Z-1712601 87.61 0.31 48 2015-08-10T19:05:42 GCA_053203845.1 821263 47 11679_1#54 2009215888-sc-2013-10-09T11:53:34Z-1712601 USA 11679_1#54 SAMEA2204010 1313 GCF_900053515.2 Generic.1.0 87.61 SRA GCF_900053515.2 category_na live 2019-04-18T15:39:19Z GPSC16 PRJEB3084 GCF_900053515.2-RS_2025_12_31 SC SC 31 1712601 2019-04-18T15:39:19Z 2014-02-18T00:00:00.000 2009215888 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHIE02 2009 2245STDY5609151 2014-02-18T09:19:59Z Prokka current 31 2009215888-sc-2013-10-09T11:53:34Z-1712601 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHIE02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC16 species_match 98.86 SAMEA2204010 4 Streptococcus pneumoniae 92.47 Streptococcus pneumoniae 1313 PRJEB3084 6 current na Best-placed reference protein set; GeneMarkS-2+ 200089 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-31 9N 9N species Homo sapiens 1906 Streptococcus pneumoniae Streptococcus pneumoniae ERS356521 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-02-28T18:05:56.853 99.34 2079117 92.47 1313 2129 Streptococcus pneumoniae 2024-02-06T15:54:52.000 2083847 107552 2079116 CSF Homo sapiens Streptococcus pneumoniae Meningitis 171 ST66 EBI 100 GCA_053203845.1 GCF_900053515.2-RS_2025_12_31 SLX Streptococcus pneumoniae GCF_900053515.2 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 89.783 https://www.ncbi.nlm.nih.gov/nuccore/FHIE00000000.2 2014-02-18T09:19:59Z GCF_900053515.2 haploid public 2009215888-sc-2013-10-09T11:53:34Z-1712601 87.61 0.31 48 2015-08-10T19:05:42 GCA_053203845.1 821263 52 11679_1#54 2009215888-sc-2013-10-09T11:53:34Z-1712601 USA 11679_1#54 SAMEA2204010 1313 GCA_900053515.2 Generic.1.0 87.61 SRA GCA_900053515.2 category_na live 2019-04-18T15:39:19Z GPSC16 PRJEB3084 Annotation submitted by SC SC SC 31 1712601 2019-04-18T15:39:19Z 2014-02-18T00:00:00.000 2009215888 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHIE02 2009 GPSC16 substr. ST66 6.10 2014-02-18T09:19:59Z Prokka current 31 2009215888-sc-2013-10-09T11:53:34Z-1712601 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHIE02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC16 species_match 98.86 SAMEA2521535 4 Streptococcus pneumoniae 93.46 Streptococcus pneumoniae 1313 PRJEB3084 7 current na 227150 type Streptococcus pneumoniae 2019-05-11 9N 9N species Homo sapiens 2013 Streptococcus pneumoniae Streptococcus pneumoniae ERS455075 SC 2012 v1.2.4 2014-09-17T09:08:12.010 98.9 2061265 93.46 1313 2059 Streptococcus pneumoniae 2024-02-06T15:55:05.000 2065113 99903 2061263 blood Homo sapiens Streptococcus pneumoniae IPD ST66 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900060865.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 40.644 https://www.ncbi.nlm.nih.gov/nuccore/FHPN00000000.2 2014-09-16T09:22:31Z GCA_900060865.2 haploid public 2013212244-sc-1946826 87.79 0.31 34 2015-08-10T19:57:07 GCA_053203845.1 816882 46 13414_1#79 2013212244-sc-1946826 USA 13414_1#79 SAMEA2521535 1313 GCF_900060865.2 Generic.1.0 87.79 SRA GCF_900060865.2 category_na live 2019-04-18T15:39:23Z GPSC16 PRJEB3084 GCF_900060865.2-RS_2025_12_28 SC SC 21 1946826 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013212244 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPN02 2012 2245STDY5819500 2014-09-16T09:22:31Z Prokka current 21 2013212244-sc-1946826 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPN02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC16 species_match 98.87 SAMEA2521535 4 Streptococcus pneumoniae 93.46 Streptococcus pneumoniae 1313 PRJEB3084 7 current na Best-placed reference protein set; GeneMarkS-2+ 227150 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-28 9N 9N species Homo sapiens 1897 Streptococcus pneumoniae Streptococcus pneumoniae ERS455075 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:12.010 98.9 2061265 93.46 1313 2111 Streptococcus pneumoniae 2024-02-06T15:55:05.000 2065113 99903 2061263 blood Homo sapiens Streptococcus pneumoniae IPD 162 ST66 EBI 100 GCA_053203845.1 GCF_900060865.2-RS_2025_12_28 SLX Streptococcus pneumoniae GCF_900060865.2 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 40.644 https://www.ncbi.nlm.nih.gov/nuccore/FHPN00000000.2 2014-09-16T09:22:31Z GCF_900060865.2 haploid public 2013212244-sc-1946826 87.79 0.31 34 2015-08-10T19:57:07 GCA_053203845.1 816882 52 13414_1#79 2013212244-sc-1946826 USA 13414_1#79 SAMEA2521535 1313 GCA_900060865.2 Generic.1.0 87.79 SRA GCA_900060865.2 category_na live 2019-04-18T15:39:23Z GPSC16 PRJEB3084 Annotation submitted by SC SC SC 21 1946826 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2013212244 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHPN02 2012 GPSC16 substr. ST66 6.10 2014-09-16T09:22:31Z Prokka current 21 2013212244-sc-1946826 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHPN02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC16 species_match 98.87 SAMEA2239116 5 Streptococcus pneumoniae 92.91 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 189851 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2092 Streptococcus pneumoniae Streptococcus pneumoniae ERS367928 SC 2006/2012 v1.2.4 2014-05-07T08:35:21.546 99.47 2119203 92.91 1313 2139 2024-02-06T05:03:06.000 2137686 89357 2119202 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900027515.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FDRJ00000000.1 2014-03-18T09:35:30Z GCA_900027515.1 haploid public 2000188-sc-2013-11-05T12:08:11Z-1750486 89.73 0.47 102 2015-08-10T19:24:43 GCA_053203845.1 835973 47 11860_7#77 2000188-sc-2013-11-05T12:08:11Z-1750486 Netherlands 11860_7#77 SAMEA2239116 1313 GCF_900027515.1 Generic.1.0 89.73 SRA GCF_900027515.1 category_na live 2018-03-09T10:27:29Z 2842STDY5644497 PRJEB4909 GCF_900027515.1-RS_2026_01_25 SC SC 36 1750486 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2000188 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRJ01 2006/2012 2842STDY5644497 2014-03-18T09:35:30Z Prokka current 36 2000188-sc-2013-11-05T12:08:11Z-1750486 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRJ01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644497 species_match 98.84 SAMEA2239116 5 Streptococcus pneumoniae 92.91 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 189851 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 2008 Streptococcus pneumoniae Streptococcus pneumoniae ERS367928 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:21.546 99.47 2119203 92.91 1313 2234 2024-02-06T05:03:06.000 2137686 89357 2119202 CSF Homo sapiens Streptococcus pneumoniae Disease 172 EBI 100 GCA_053203845.1 GCF_900027515.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900027515.1 type CSF 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FDRJ00000000.1 2014-03-18T09:35:30Z GCF_900027515.1 haploid public 2000188-sc-2013-11-05T12:08:11Z-1750486 89.73 0.47 102 2015-08-10T19:24:43 GCA_053203845.1 835973 54 11860_7#77 2000188-sc-2013-11-05T12:08:11Z-1750486 Netherlands 11860_7#77 SAMEA2239116 1313 GCA_900027515.1 Generic.1.0 89.73 SRA GCA_900027515.1 category_na live 2018-03-09T10:27:29Z 2842STDY5644497 PRJEB4909 Annotation submitted by SC SC SC 36 1750486 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2000188 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDRJ01 2006/2012 2842STDY5644497 6.10 2014-03-18T09:35:30Z Prokka current 36 2000188-sc-2013-11-05T12:08:11Z-1750486 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDRJ01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644497 species_match 98.84 SAMEA1033659 9 Streptococcus pneumoniae 89.32 Streptococcus pneumoniae 1313 PRJEB2656 9 current na 82686 type Streptococcus pneumoniae 2016-02-13 09L 09L species Homo sapiens 2086 Streptococcus pneumoniae Streptococcus pneumoniae ERS050455 SC v1.2.4 2012-01-20T22:00:06.206 99.31 2092035 89.32 1313 2133 2024-02-05T23:15:00.000 2092181 82686 2092033 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_001679515.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900058085.1 type CSF 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FIYU00000000.1 2012-01-16T15:11:01Z GCA_900058085.1 haploid public C14257-sc-2011-08-23T15:08:40Z-1261874 89.29 0.31 54 2015-08-07T15:39:30 GCA_001679515.1 826287 47 7004_3#54 C14257-sc-2011-08-23T15:08:40Z-1261874 Malawi 7004_3#54 SAMEA1033659 1313 GCF_900058085.1 Generic.1.0 89.29 SRA GCF_900058085.1 category_na live 2018-03-09T10:03:50Z C14257 PRJEB2656 GCF_900058085.1-RS_2026_01_25 SC SC 53 1261874 2018-03-09T10:03:50Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIYU01 C14257 2012-01-16T15:11:01Z Prokka current 53 C14257-sc-2011-08-23T15:08:40Z-1261874 Generic Streptococcus_pneumoniae_samples_from_Malawi FIYU01 Scaffold SOURCE_DATABASE_GENBANK Malawi 2016-02-13 C14257 species_match 98.7 SAMEA1033659 9 Streptococcus pneumoniae 89.32 Streptococcus pneumoniae 1313 PRJEB2656 9 current na Best-placed reference protein set; GeneMarkS-2+ 82686 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 09L 09L species Homo sapiens 1994 Streptococcus pneumoniae Streptococcus pneumoniae ERS050455 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq v1.2.4 2012-01-20T22:00:06.206 99.31 2092035 89.32 1313 2219 2024-02-05T23:15:00.000 2092181 82686 2092033 CSF Homo sapiens Streptococcus pneumoniae Disease 177 EBI 100 GCA_001679515.1 GCF_900058085.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900058085.1 type CSF 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FIYU00000000.1 2012-01-16T15:11:01Z GCF_900058085.1 haploid public C14257-sc-2011-08-23T15:08:40Z-1261874 89.29 0.31 54 2015-08-07T15:39:30 GCA_001679515.1 826287 48 7004_3#54 C14257-sc-2011-08-23T15:08:40Z-1261874 Malawi 7004_3#54 SAMEA1033659 1313 GCA_900058085.1 Generic.1.0 89.29 SRA GCA_900058085.1 category_na live 2018-03-09T10:03:50Z C14257 PRJEB2656 Annotation submitted by SC SC SC 53 1261874 2018-03-09T10:03:50Z 2012-01-16T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FIYU01 C14257 6.10 2012-01-16T15:11:01Z Prokka current 53 C14257-sc-2011-08-23T15:08:40Z-1261874 Generic Streptococcus_pneumoniae_samples_from_Malawi FIYU01 Scaffold SOURCE_DATABASE_REFSEQ Malawi 2016-02-13 C14257 species_match 98.7 SAMEA2238934 7 Streptococcus pneumoniae 93.39 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 106916 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2056 Streptococcus pneumoniae Streptococcus pneumoniae ERS367746 SC 2006/2012 v1.2.4 2014-05-07T08:35:07.626 99.01 2077871 93.39 1313 2102 2024-02-06T05:09:27.000 2081867 82523 2077864 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900041755.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 48.0827 https://www.ncbi.nlm.nih.gov/nuccore/FCWT00000000.1 2014-03-18T09:35:31Z GCA_900041755.1 haploid public 2111306-sc-2013-11-05T12:05:08Z-1750298 88.44 0.31 53 2018-03-10T18:56:49 GCA_053203845.1 821649 46 11861_3#81 2111306-sc-2013-11-05T12:05:08Z-1750298 Netherlands 11861_3#81 SAMEA2238934 1313 GCF_900041755.1 Generic.1.0 88.44 SRA GCF_900041755.1 category_na live 2018-03-09T10:28:17Z 2842STDY5644309 PRJEB4909 GCF_900041755.1-RS_2025_09_28 SC SC 38 1750298 2018-03-09T10:28:17Z 2014-03-18T00:00:00.000 2111306 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCWT01 2006/2012 2842STDY5644309 2014-03-18T09:35:31Z Prokka current 38 2111306-sc-2013-11-05T12:05:08Z-1750298 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCWT01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644309 species_match 98.86 SAMEA2238934 7 Streptococcus pneumoniae 93.39 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 106916 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1939 Streptococcus pneumoniae Streptococcus pneumoniae ERS367746 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:07.626 99.01 2077871 93.39 1313 2155 2024-02-06T05:09:27.000 2081867 82523 2077864 CSF Homo sapiens Streptococcus pneumoniae Disease 165 EBI 100 GCA_053203845.1 GCF_900041755.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900041755.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 48.0827 https://www.ncbi.nlm.nih.gov/nuccore/FCWT00000000.1 2014-03-18T09:35:31Z GCF_900041755.1 haploid public 2111306-sc-2013-11-05T12:05:08Z-1750298 88.44 0.31 53 2018-03-10T18:56:49 GCA_053203845.1 821649 51 11861_3#81 2111306-sc-2013-11-05T12:05:08Z-1750298 Netherlands 11861_3#81 SAMEA2238934 1313 GCA_900041755.1 Generic.1.0 88.44 SRA GCA_900041755.1 category_na live 2018-03-09T10:28:17Z 2842STDY5644309 PRJEB4909 Annotation submitted by SC SC SC 38 1750298 2018-03-09T10:28:17Z 2014-03-18T00:00:00.000 2111306 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCWT01 2006/2012 2842STDY5644309 6.10 2014-03-18T09:35:31Z Prokka current 38 2111306-sc-2013-11-05T12:05:08Z-1750298 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCWT01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644309 species_match 98.86 SAMEA2238693 6 Streptococcus pneumoniae 94.64 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 137933 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1993 Streptococcus pneumoniae Streptococcus pneumoniae ERS367505 SC 2006/2012 v1.2.4 2014-05-07T08:34:49.943 99.47 2041092 94.64 1313 2041 2024-02-06T05:18:40.000 2043559 81759 2041091 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900026485.1 type CSF 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FEEO00000000.1 2014-03-18T09:35:30Z GCA_900026485.1 haploid public 2093029-sc-2013-11-05T12:00:50Z-1750055 88.03 0.31 44 2015-08-10T19:24:22 GCA_053203845.1 807914 48 11861_2#33 2093029-sc-2013-11-05T12:00:50Z-1750055 Netherlands 11861_2#33 SAMEA2238693 1313 GCF_900026485.1 Generic.1.0 88.03 SRA GCF_900026485.1 category_na live 2018-03-09T10:29:17Z 2842STDY5644066 PRJEB4909 GCF_900026485.1-RS_2025_09_21 SC SC 35 1750055 2018-03-09T10:29:17Z 2014-03-18T00:00:00.000 2093029 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEEO01 2006/2012 2842STDY5644066 2014-03-18T09:35:30Z Prokka current 35 2093029-sc-2013-11-05T12:00:50Z-1750055 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEEO01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644066 species_match 98.87 SAMEA2238693 6 Streptococcus pneumoniae 94.64 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 137933 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1885 Streptococcus pneumoniae Streptococcus pneumoniae ERS367505 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:49.943 99.47 2041092 94.64 1313 2100 2024-02-06T05:18:40.000 2043559 81759 2041091 CSF Homo sapiens Streptococcus pneumoniae Disease 163 EBI 100 GCA_053203845.1 GCF_900026485.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900026485.1 type CSF 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FEEO00000000.1 2014-03-18T09:35:30Z GCF_900026485.1 haploid public 2093029-sc-2013-11-05T12:00:50Z-1750055 88.03 0.31 44 2015-08-10T19:24:22 GCA_053203845.1 807914 52 11861_2#33 2093029-sc-2013-11-05T12:00:50Z-1750055 Netherlands 11861_2#33 SAMEA2238693 1313 GCA_900026485.1 Generic.1.0 88.03 SRA GCA_900026485.1 category_na live 2018-03-09T10:29:17Z 2842STDY5644066 PRJEB4909 Annotation submitted by SC SC SC 35 1750055 2018-03-09T10:29:17Z 2014-03-18T00:00:00.000 2093029 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEEO01 2006/2012 2842STDY5644066 6.10 2014-03-18T09:35:30Z Prokka current 35 2093029-sc-2013-11-05T12:00:50Z-1750055 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEEO01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644066 species_match 98.87 SAMEA2238691 7 Streptococcus pneumoniae 93.24 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 112583 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2034 Streptococcus pneumoniae Streptococcus pneumoniae ERS367503 SC 2006/2012 v1.2.4 2014-05-07T08:34:49.753 99.47 2079641 93.24 1313 2081 2024-02-06T05:17:24.000 2082907 81757 2079640 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900023515.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FEEM00000000.1 2014-03-18T09:35:30Z GCA_900023515.1 haploid public 2092630-sc-2013-11-05T12:00:48Z-1750053 88.36 0.4 52 2015-08-10T19:24:22 GCA_053203845.1 823719 47 11861_2#30 2092630-sc-2013-11-05T12:00:48Z-1750053 Netherlands 11861_2#30 SAMEA2238691 1313 GCF_900023515.1 Generic.1.0 88.36 SRA GCF_900023515.1 category_na live 2018-03-09T10:29:11Z 2842STDY5644064 PRJEB4909 GCF_900023515.1-RS_2026_01_25 SC SC 40 1750053 2018-03-09T10:29:11Z 2014-03-18T00:00:00.000 2092630 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEEM01 2006/2012 2842STDY5644064 2014-03-18T09:35:30Z Prokka current 40 2092630-sc-2013-11-05T12:00:48Z-1750053 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEEM01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644064 species_match 98.85 SAMEA2238691 7 Streptococcus pneumoniae 93.24 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 112583 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1937 Streptococcus pneumoniae Streptococcus pneumoniae ERS367503 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:49.753 99.47 2079641 93.24 1313 2154 2024-02-06T05:17:24.000 2082907 81757 2079640 CSF Homo sapiens Streptococcus pneumoniae Disease 165 EBI 100 GCA_053203845.1 GCF_900023515.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900023515.1 type CSF 98.85 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FEEM00000000.1 2014-03-18T09:35:30Z GCF_900023515.1 haploid public 2092630-sc-2013-11-05T12:00:48Z-1750053 88.36 0.4 52 2015-08-10T19:24:22 GCA_053203845.1 823719 52 11861_2#30 2092630-sc-2013-11-05T12:00:48Z-1750053 Netherlands 11861_2#30 SAMEA2238691 1313 GCA_900023515.1 Generic.1.0 88.36 SRA GCA_900023515.1 category_na live 2018-03-09T10:29:11Z 2842STDY5644064 PRJEB4909 Annotation submitted by SC SC SC 40 1750053 2018-03-09T10:29:11Z 2014-03-18T00:00:00.000 2092630 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEEM01 2006/2012 2842STDY5644064 6.10 2014-03-18T09:35:30Z Prokka current 40 2092630-sc-2013-11-05T12:00:48Z-1750053 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEEM01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644064 species_match 98.85 SAMEA1032451 8 Streptococcus pneumoniae 92.42 Streptococcus pneumoniae 1313 PRJEB2632 8 current na 80750 type Streptococcus pneumoniae 2015-07-29 9N 9N species Homo sapiens 1989 Streptococcus pneumoniae Streptococcus pneumoniae ERS044155 SC 2001 v1.2.4 2012-01-20T21:38:52.813 99.47 2080792 92.42 1313 2020 2024-02-06T09:02:24.000 2080792 80750 2080792 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001169025.2 type nasopharynx 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/CNPZ00000000.2 2012-01-10T10:00:08Z GCA_001169025.2 haploid public 436915-sc-2011-08-01T09:46:22Z-1250220 87.63 0.31 168 2015-09-10T08:19:44 GCA_053203845.1 821868 31 6952_4#6 436915-sc-2011-08-01T09:46:22Z-1250220 USA: Massachesetts Streptococcus pneumoniae SAMEA1032451 1313 GCF_001169025.1 Generic.1.0 87.63 SRA GCF_001169025.1 category_na live 2018-03-09T11:43:43Z 436915 PRJEB2632 GCF_001169025.1-RS_2025_09_15 SC SC 168 2018-03-09T11:43:43Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNPZ02 2001 436915 2012-01-10T10:00:08Z Velvet current 168 436915-sc-2011-08-01T09:46:22Z-1250220 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNPZ02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 436915 species_match 98.87 SAMEA1032451 8 Streptococcus pneumoniae 92.42 Streptococcus pneumoniae 1313 PRJEB2632 8 current na Best-placed reference protein set; GeneMarkS-2+ 80750 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-15 9N 9N species Homo sapiens 1931 Streptococcus pneumoniae Streptococcus pneumoniae ERS044155 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2001 v1.2.4 2012-01-20T21:38:52.813 99.47 2080792 92.42 1313 2152 2024-02-06T09:02:24.000 2080792 80750 2080792 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 168 EBI 100 GCA_053203845.1 GCF_001169025.1-RS_2025_09_15 SLX Streptococcus pneumoniae GCF_001169025.1 type nasopharynx 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/CNPZ00000000.2 2012-01-10T10:00:08Z GCF_001169025.1 haploid public 436915-sc-2011-08-01T09:46:22Z-1250220 87.63 0.31 168 2015-09-10T08:19:44 GCA_053203845.1 821868 53 6952_4#6 436915-sc-2011-08-01T09:46:22Z-1250220 USA: Massachesetts Streptococcus pneumoniae SAMEA1032451 1313 GCA_001169025.2 Generic.1.0 87.63 SRA GCA_001169025.2 category_na live 2018-03-09T11:43:43Z 436915 PRJEB2632 Annotation submitted by SC SC SC 168 2018-03-09T11:43:43Z 2012-01-10T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNPZ02 2001 436915 6.10 2012-01-10T10:00:08Z Velvet current 168 436915-sc-2011-08-01T09:46:22Z-1250220 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNPZ02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 436915 species_match 98.87 SAMEA1025248 8 Streptococcus pneumoniae 94.54 Streptococcus pneumoniae 1313 PRJEB2395 8 current na 79293 type Streptococcus pneumoniae 2015-07-17 9N 9N species Homo sapiens 2022 Streptococcus pneumoniae Streptococcus pneumoniae ERS021017 SC 2009-05-06 v1.2.4 2012-01-20T19:59:04.573 99.3 2049208 94.54 1313 2062 2024-02-06T09:03:59.000 2049208 79293 2049203 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001193995.1 type nasopharynx 98.82 OK 39.5 Streptococcus pneumoniae 80.2701 https://www.ncbi.nlm.nih.gov/nuccore/CRJK00000000.1 2011-11-15T09:28:17Z GCA_001193995.1 haploid public SMRU1507-sc-2011-01-27-1061720 88.29 0.31 43 2015-07-28T08:11:43 GCA_053203845.1 811499 40 6753_2#18 SMRU1507-sc-2011-01-27-1061720 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025248 1313 GCF_001193995.1 Generic.1.0 88.29 SRA GCF_001193995.1 category_na live 2018-03-09T12:05:28Z SMRU1507 PRJEB2395 GCF_001193995.1-RS_2026_01_19 SC SC 43 2018-03-09T12:05:28Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRJK01 2009-05-06 SMRU1507 2011-11-15T09:28:17Z Prokka current 43 SMRU1507-sc-2011-01-27-1061720 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRJK01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1507 species_match 98.82 SAMEA1025248 8 Streptococcus pneumoniae 94.54 Streptococcus pneumoniae 1313 PRJEB2395 8 current na Best-placed reference protein set; GeneMarkS-2+ 79293 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-19 9N 9N species Homo sapiens 1931 Streptococcus pneumoniae Streptococcus pneumoniae ERS021017 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-05-06 v1.2.4 2012-01-20T19:59:04.573 99.3 2049208 94.54 1313 2143 2024-02-06T09:03:59.000 2049208 79293 2049203 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 169 EBI 100 GCA_053203845.1 GCF_001193995.1-RS_2026_01_19 SLX Streptococcus pneumoniae GCF_001193995.1 type nasopharynx 98.82 OK 39.5 Streptococcus pneumoniae 80.2701 https://www.ncbi.nlm.nih.gov/nuccore/CRJK00000000.1 2011-11-15T09:28:17Z GCF_001193995.1 haploid public SMRU1507-sc-2011-01-27-1061720 88.29 0.31 43 2015-07-28T08:11:43 GCA_053203845.1 811499 43 6753_2#18 SMRU1507-sc-2011-01-27-1061720 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025248 1313 GCA_001193995.1 Generic.1.0 88.29 SRA GCA_001193995.1 category_na live 2018-03-09T12:05:28Z SMRU1507 PRJEB2395 Annotation submitted by SC SC SC 43 2018-03-09T12:05:28Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRJK01 2009-05-06 SMRU1507 6.10 2011-11-15T09:28:17Z Prokka current 43 SMRU1507-sc-2011-01-27-1061720 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRJK01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1507 species_match 98.82 SAMEA1025590 11 Streptococcus pneumoniae 94.79 Streptococcus pneumoniae 1313 PRJEB2395 11 current na 74634 type Streptococcus pneumoniae 2015-07-28 9N 9N species Homo sapiens 2006 Streptococcus pneumoniae Streptococcus pneumoniae ERS020670 SC 2009-01-12 v1.2.4 2012-01-20T19:55:14.293 99.3 2039403 94.79 1313 2050 2024-02-06T09:03:50.000 2039403 74634 2039400 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001342635.1 type nasopharynx 98.82 OK 39.5 Streptococcus pneumoniae 80.2701 https://www.ncbi.nlm.nih.gov/nuccore/CHUA00000000.1 2011-11-15T09:28:18Z GCA_001342635.1 haploid public SMRU1160-sc-2011-01-27-1061373 88.09 0.31 51 2015-07-28T08:11:28 GCA_053203845.1 807821 44 6755_5#8 SMRU1160-sc-2011-01-27-1061373 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025590 1313 GCF_001342635.1 Generic.1.0 88.09 SRA GCF_001342635.1 category_na live 2018-03-09T12:03:08Z SMRU1160 PRJEB2395 GCF_001342635.1-RS_2026_01_10 SC SC 51 2018-03-09T12:03:08Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHUA01 2009-01-12 SMRU1160 2011-11-15T09:28:18Z Prokka current 51 SMRU1160-sc-2011-01-27-1061373 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHUA01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-04-22 SMRU1160 species_match 98.82 SAMEA1025590 11 Streptococcus pneumoniae 94.79 Streptococcus pneumoniae 1313 PRJEB2395 11 current na Best-placed reference protein set; GeneMarkS-2+ 74634 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-10 9N 9N species Homo sapiens 1928 Streptococcus pneumoniae Streptococcus pneumoniae ERS020670 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-01-12 v1.2.4 2012-01-20T19:55:14.293 99.3 2039403 94.79 1313 2134 2024-02-06T09:03:50.000 2039403 74634 2039400 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 159 EBI 100 GCA_053203845.1 GCF_001342635.1-RS_2026_01_10 SLX Streptococcus pneumoniae GCF_001342635.1 type nasopharynx 98.82 OK 39.5 Streptococcus pneumoniae 80.2701 https://www.ncbi.nlm.nih.gov/nuccore/CHUA00000000.1 2011-11-15T09:28:18Z GCF_001342635.1 haploid public SMRU1160-sc-2011-01-27-1061373 88.09 0.31 51 2015-07-28T08:11:28 GCA_053203845.1 807821 47 6755_5#8 SMRU1160-sc-2011-01-27-1061373 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025590 1313 GCA_001342635.1 Generic.1.0 88.09 SRA GCA_001342635.1 category_na live 2018-03-09T12:03:08Z SMRU1160 PRJEB2395 Annotation submitted by SC SC SC 51 2018-03-09T12:03:08Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CHUA01 2009-01-12 SMRU1160 6.10 2011-11-15T09:28:18Z Prokka current 51 SMRU1160-sc-2011-01-27-1061373 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CHUA01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-04-22 SMRU1160 species_match 98.82 SAMEA1025186 7 Streptococcus pneumoniae 94.45 Streptococcus pneumoniae 1313 PRJEB2395 7 current na 74111 type Streptococcus pneumoniae 2015-07-17 9N 9N species Homo sapiens 2017 Streptococcus pneumoniae Streptococcus pneumoniae ERS020926 SC 2009-04-06 v1.2.4 2012-01-20T19:58:03.160 99.3 2047916 94.45 1313 2057 2024-02-05T16:14:46.000 2047916 74111 2047915 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001191735.1 type nasopharynx 98.82 OK 39.5 Streptococcus pneumoniae 80.2701 https://www.ncbi.nlm.nih.gov/nuccore/CQWB00000000.1 2011-11-15T09:28:18Z GCA_001191735.1 haploid public SMRU1416-sc-2011-01-27-1061629 88.15 0.31 47 2015-07-28T08:11:41 GCA_053203845.1 811067 40 6710_8#24 SMRU1416-sc-2011-01-27-1061629 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025186 1313 GCF_001191735.1 Generic.1.0 88.15 SRA GCF_001191735.1 category_na live 2018-03-09T09:52:53Z SMRU1416 PRJEB2395 GCF_001191735.1-RS_2026_01_07 SC SC 47 2018-03-09T09:52:53Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQWB01 2009-04-06 SMRU1416 2011-11-15T09:28:18Z Prokka current 47 SMRU1416-sc-2011-01-27-1061629 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQWB01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU1416 species_match 98.82 SAMEA1025186 7 Streptococcus pneumoniae 94.45 Streptococcus pneumoniae 1313 PRJEB2395 7 current na Best-placed reference protein set; GeneMarkS-2+ 74111 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-07 9N 9N species Homo sapiens 1945 Streptococcus pneumoniae Streptococcus pneumoniae ERS020926 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-04-06 v1.2.4 2012-01-20T19:58:03.160 99.3 2047916 94.45 1313 2145 2024-02-05T16:14:46.000 2047916 74111 2047915 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 156 EBI 100 GCA_053203845.1 GCF_001191735.1-RS_2026_01_07 SLX Streptococcus pneumoniae GCF_001191735.1 type nasopharynx 98.82 OK 39.5 Streptococcus pneumoniae 80.2701 https://www.ncbi.nlm.nih.gov/nuccore/CQWB00000000.1 2011-11-15T09:28:18Z GCF_001191735.1 haploid public SMRU1416-sc-2011-01-27-1061629 88.15 0.31 47 2015-07-28T08:11:41 GCA_053203845.1 811067 44 6710_8#24 SMRU1416-sc-2011-01-27-1061629 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025186 1313 GCA_001191735.1 Generic.1.0 88.15 SRA GCA_001191735.1 category_na live 2018-03-09T09:52:53Z SMRU1416 PRJEB2395 Annotation submitted by SC SC SC 47 2018-03-09T09:52:53Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CQWB01 2009-04-06 SMRU1416 6.10 2011-11-15T09:28:18Z Prokka current 47 SMRU1416-sc-2011-01-27-1061629 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CQWB01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU1416 species_match 98.82 SAMEA1024793 12 Streptococcus pneumoniae 94.72 Streptococcus pneumoniae 1313 PRJEB2393 12 current na 67600 type Streptococcus pneumoniae 2015-07-17 9N 9N species Homo sapiens 2008 Streptococcus pneumoniae Streptococcus pneumoniae ERS020345 SC 2008-10-08 v1.2.4 2012-01-20T19:51:37.220 99.3 2041617 94.72 1313 2048 2024-02-06T09:04:10.000 2041627 64783 2041607 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001149505.1 type nasopharynx 98.82 OK 39.5 Streptococcus pneumoniae 80.2701 https://www.ncbi.nlm.nih.gov/nuccore/CRPK00000000.1 2011-11-29T12:03:46Z GCA_001149505.1 haploid public SMRU835-sc-2011-01-27-1061024 88.12 0.31 53 2015-07-28T08:11:47 GCA_053203845.1 808652 40 6775_1#19 SMRU835-sc-2011-01-27-1061024 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024793 1313 GCF_001149505.1 Generic.1.0 88.12 SRA GCF_001149505.1 category_na live 2018-03-09T12:09:11Z SMRU835 PRJEB2393 GCF_001149505.1-RS_2026_01_12 SC SC 52 2018-03-09T12:09:11Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRPK01 2008-10-08 SMRU835 2011-11-29T12:03:46Z Prokka current 52 SMRU835-sc-2011-01-27-1061024 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRPK01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-17 SMRU835 species_match 98.82 SAMEA1024793 12 Streptococcus pneumoniae 94.72 Streptococcus pneumoniae 1313 PRJEB2393 12 current na Best-placed reference protein set; GeneMarkS-2+ 67600 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-12 9N 9N species Homo sapiens 1912 Streptococcus pneumoniae Streptococcus pneumoniae ERS020345 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-10-08 v1.2.4 2012-01-20T19:51:37.220 99.3 2041617 94.72 1313 2115 2024-02-06T09:04:10.000 2041627 64783 2041607 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 159 EBI 100 GCA_053203845.1 GCF_001149505.1-RS_2026_01_12 SLX Streptococcus pneumoniae GCF_001149505.1 type nasopharynx 98.82 OK 39.5 Streptococcus pneumoniae 80.2701 https://www.ncbi.nlm.nih.gov/nuccore/CRPK00000000.1 2011-11-29T12:03:46Z GCF_001149505.1 haploid public SMRU835-sc-2011-01-27-1061024 88.12 0.31 53 2015-07-28T08:11:47 GCA_053203845.1 808652 44 6775_1#19 SMRU835-sc-2011-01-27-1061024 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1024793 1313 GCA_001149505.1 Generic.1.0 88.12 SRA GCA_001149505.1 category_na live 2018-03-09T12:09:11Z SMRU835 PRJEB2393 Annotation submitted by SC SC SC 52 2018-03-09T12:09:11Z 2011-11-29T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CRPK01 2008-10-08 SMRU835 6.10 2011-11-29T12:03:46Z Prokka current 52 SMRU835-sc-2011-01-27-1061024 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CRPK01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-17 SMRU835 species_match 98.82 SAMEA1026624 10 Streptococcus pneumoniae 94.85 Streptococcus pneumoniae 1313 PRJEB2417 10 current na 58650 type Streptococcus pneumoniae 2017-06-27 9N 9N species Homo sapiens 2016 Streptococcus pneumoniae ERS023232 SC 2008-12-02 v1.2.4 2011-09-23T19:13:37.143 97.89 2058273 94.85 1313 2056 2017-06-24T15:39:00.000 2058273 58650 2058272 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900190845.1 type Nasophaynx 98.77 OK 39.5 Streptococcus pneumoniae 6.19679 https://www.ncbi.nlm.nih.gov/nuccore/FYNO00000000.1 2011-09-20 GCA_900190845.1 haploid ERS023232 88.97 0.31 61 2017-06-28T08:06:15 GCA_053203845.1 814779 40 6512_1#10 United Kingdom UoS3042-sc-2011-02-14-1078286; 6512_110 1313 GCF_900190845.1 Generic.1.0 88.97 SRA Sample Description GCF_900190845.1 category_na live 2017-06-22 UoS3042 PRJEB2417 GCF_900190845.1-RS_2025_09_04 SC 61 1078286 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYNO01 2008-12-02 UoS3042 Prokka current 61 ERS023232 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYNO01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS3042 species_match 98.77 SAMEA1026624 10 Streptococcus pneumoniae 94.85 Streptococcus pneumoniae 1313 PRJEB2417 10 current na Best-placed reference protein set; GeneMarkS-2+ 58650 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 9N 9N species Homo sapiens 1928 Streptococcus pneumoniae ERS023232 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-12-02 v1.2.4 2011-09-23T19:13:37.143 97.89 2058273 94.85 1313 2125 2017-06-24T15:39:00.000 2058273 58650 2058272 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 155 EBI 100 GCA_053203845.1 GCF_900190845.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900190845.1 type Nasophaynx 98.77 OK 39.5 Streptococcus pneumoniae 6.19679 https://www.ncbi.nlm.nih.gov/nuccore/FYNO00000000.1 2011-09-20 GCF_900190845.1 haploid ERS023232 88.97 0.31 61 2017-06-28T08:06:15 GCA_053203845.1 814779 42 6512_1#10 United Kingdom UoS3042-sc-2011-02-14-1078286; 6512_110 1313 GCA_900190845.1 Generic.1.0 88.97 SRA Sample Description GCA_900190845.1 category_na live 2017-06-22 UoS3042 PRJEB2417 Annotation submitted by SC SC 61 1078286 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYNO01 2008-12-02 UoS3042 6.10 Prokka current 61 ERS023232 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYNO01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS3042 species_match 98.77 SAMEA3353531 2 Streptococcus pneumoniae 93.17 Streptococcus pneumoniae PRJEB3084 2 na 719564 type Streptococcus pneumoniae 2019-05-11 9N 9N Homo sapiens 2061 Streptococcus pneumoniae Streptococcus pneumoniae ERS707886 SC 2012 2015-10-14T08:10:52.930 2069557 93.17 1313 2112 Streptococcus pneumoniae 2024-02-06T15:57:17.000 2069557 719564 2069555 NP Homo sapiens Carriage from large multi-isolate project ST3983 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901270935.1 type NP 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAATEZ000000000.1 2015-10-13T13:59:22Z GCA_901270935.1 haploid public GPS_ZA_carriage_SP1417-sc-2278131 87.87 17 2018-03-10T20:09:59 GCA_053203845.1 819356 51 17059_8#89 GPS_ZA_carriage_SP1417-sc-2278131 South Africa 17059_8#89 SAMEA3353531 1313 Generic.1.0 87.87 SRA category_na live 2019-04-18T15:56:56Z GPSC137 PRJEB3084 SC SC 17 2278131 2019-04-18T15:56:56Z 2015-10-13T00:00:00.000 31910 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAATEZ01 2012 GPSC137 substr. ST3983 2015-10-13T13:59:22Z Prokka current 17 GPS_ZA_carriage_SP1417-sc-2278131 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAATEZ01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-11 GPSC137 species_match 98.81 SAMEA3353993 2 Streptococcus pneumoniae 93.14 Streptococcus pneumoniae PRJEB3084 2 na 629839 type Streptococcus pneumoniae 2019-05-11 9N 9N Homo sapiens 2062 Streptococcus pneumoniae Streptococcus pneumoniae ERS708348 SC 2014 2015-10-14T08:11:07.773 2066677 93.14 1313 2114 Streptococcus pneumoniae 2024-02-06T15:57:32.000 2066760 629839 2066675 blood Homo sapiens IPD from large multi-isolate project ST3983 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901226585.1 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAMQC000000000.1 2015-10-13T13:59:29Z GCA_901226585.1 haploid public GPS_ZA_2840-sc-2278599 87.72 14 2018-03-10T20:10:20 GCA_053203845.1 818155 52 17175_7#47 GPS_ZA_2840-sc-2278599 South Africa 17175_7#47 SAMEA3353993 1313 Generic.1.0 87.72 SRA category_na live 2019-04-18T15:56:59Z GPSC137 PRJEB3084 SC SC 13 2278599 2019-04-18T15:56:59Z 2015-10-13T00:00:00.000 42176 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAMQC01 2014 GPSC137 substr. ST3983 2015-10-13T13:59:29Z Prokka current 13 GPS_ZA_2840-sc-2278599 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAMQC01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-11 GPSC137 species_match 98.82 SAMEA104155055 2 Streptococcus pneumoniae 92.85 Streptococcus pneumoniae PRJEB3084 2 na 628119 type Streptococcus pneumoniae 2019-05-11 9N 9N Homo sapiens 2062 Streptococcus pneumoniae Streptococcus pneumoniae ERS1814073 SC 2008 2017-08-10T16:10:42.393 2067863 92.85 1313 2114 Streptococcus pneumoniae 2024-02-06T15:51:57.000 2067863 2245STDY6655394 628119 2067863 blood Homo sapiens IPD from large multi-isolate project ST13897 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901317725.1 type Streptococcus pneumoniae blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABABF000000000.1 2017-08-08T13:54:45Z GCA_901317725.1 haploid public 905d7850-c37a-11e6-b158-3c4a9275d6c8 87.49 12 2017-08-10T17:10:55.593 GCA_053203845.1 818911 52 22114_6#78 905d7850-c37a-11e6-b158-3c4a9275d6c8 Israel 22114_6#78 SAMEA104155055 1313 Generic.1.0 87.49 SRA category_na live 2019-04-18T15:32:23Z GPSC137 PRJEB3084 SC SC 12 2869297 2019-04-18T15:32:23Z 2017-08-08T00:00:00.000 188838 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABABF01 2008 GPSC137 substr. ST13897 2017-08-08T13:54:45Z Prokka current 12 905d7850-c37a-11e6-b158-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABABF01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-11 GPSC137 species_match 98.82 SAMEA3389365 2 Streptococcus pneumoniae 94.95 Streptococcus pneumoniae PRJEB3084 2 na 622513 type Streptococcus pneumoniae 2019-05-10 9N 9N Homo sapiens 1994 Streptococcus pneumoniae Streptococcus pneumoniae ERS725468 SC 2014 2016-01-13T08:11:05.716 2019738 94.95 1313 2045 Streptococcus pneumoniae 2024-02-06T15:53:12.000 2019972 622513 2019738 NP swab Homo sapiens carriage from large multi-isolate project ST3983 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901324245.1 type NP swab 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABBAB000000000.1 2016-01-12T09:01:08Z GCA_901324245.1 haploid public GPS_MW_BND1DB-sc-2295840 87.39 16 2018-03-10T20:14:52 GCA_053203845.1 800128 51 17870_7#81 GPS_MW_BND1DB-sc-2295840 Malawi 17870_7#81 SAMEA3389365 1313 Generic.1.0 87.39 SRA category_na live 2019-04-18T15:32:43Z GPSC137 PRJEB3084 SC SC 15 2295840 2019-04-18T15:32:43Z 2016-01-12T00:00:00.000 GPS_MW_BND1DB https://www.ncbi.nlm.nih.gov/Traces/wgs/CABBAB01 2014 GPSC137 substr. ST3983 2016-01-12T09:01:08Z Prokka current 15 GPS_MW_BND1DB-sc-2295840 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABBAB01 Scaffold SOURCE_DATABASE_GENBANK Malawi 2019-05-10 GPSC137 species_match 98.83 SAMEA3353289 2 Streptococcus pneumoniae 93.2 Streptococcus pneumoniae PRJEB3084 2 na 620804 type Streptococcus pneumoniae 2019-05-11 9N 9N Homo sapiens 2066 Streptococcus pneumoniae Streptococcus pneumoniae ERS707644 SC 2012 2015-10-14T08:10:44.473 2067752 93.2 1313 2119 Streptococcus pneumoniae 2024-02-06T15:57:09.000 2067752 620804 2067743 NP Homo sapiens Carriage from large multi-isolate project ST3983 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901253825.1 type NP 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAQQX000000000.1 2015-10-13T13:59:24Z GCA_901253825.1 haploid public GPS_ZA_carriage_SP1297-sc-2277887 87.82 13 2018-03-10T20:09:49 GCA_053203845.1 819476 53 17059_7#63 GPS_ZA_carriage_SP1297-sc-2277887 South Africa 17059_7#63 SAMEA3353289 1313 Generic.1.0 87.82 SRA category_na live 2019-04-18T15:56:54Z GPSC137 PRJEB3084 SC SC 13 2277887 2019-04-18T15:56:54Z 2015-10-13T00:00:00.000 31453 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAQQX01 2012 GPSC137 substr. ST3983 2015-10-13T13:59:24Z Prokka current 13 GPS_ZA_carriage_SP1297-sc-2277887 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAQQX01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-11 GPSC137 species_match 98.83 SAMEA104035658 2 Streptococcus pneumoniae 94.74 Streptococcus pneumoniae PRJEB3084 2 na 507910 type Streptococcus pneumoniae 2019-05-11 9N 9N Homo sapiens 2017 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699551 SC 2013 2017-08-10T16:10:00.680 2057495 94.74 1313 2071 Streptococcus pneumoniae 2024-02-06T15:52:20.000 2057495 2245STDY6835734 507910 2057493 blood Homo sapiens IPD from large multi-isolate project ST8809 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901308135.1 type Streptococcus pneumoniae blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAYQS000000000.1 2017-08-08T13:54:43Z GCA_901308135.1 haploid public b2bd11b0-1f66-11e7-b93e-3c4a9275d6c8 88.83 24 2017-08-10T17:09:59.280 GCA_053203845.1 813444 54 22841_2#79 b2bd11b0-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_2#79 SAMEA104035658 1313 Generic.1.0 88.83 SRA category_na live 2019-04-18T15:32:30Z GPSC16 PRJEB3084 SC SC 24 3052409 2019-04-18T15:32:30Z 2017-08-08T00:00:00.000 27072 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAYQS01 2013 GPSC16 substr. ST8809 2017-08-08T13:54:43Z Prokka current 24 b2bd11b0-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAYQS01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-11 GPSC16 species_match 98.87 SAMEA3354287 2 Streptococcus pneumoniae 93.13 Streptococcus pneumoniae PRJEB3084 2 na 499230 type Streptococcus pneumoniae 2019-05-11 9N 9N Homo sapiens 2061 Streptococcus pneumoniae Streptococcus pneumoniae ERS708642 SC 2014 2015-10-14T08:11:15.500 2069879 93.13 1313 2113 Streptococcus pneumoniae 2024-02-06T15:53:16.000 2069918 499230 2069877 CSF Homo sapiens Meningitis from large multi-isolate project ST3983 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901274385.1 type CSF 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAATSC000000000.1 2015-10-13T13:58:32Z GCA_901274385.1 haploid public GPS_ZA_3054-sc-2278895 87.85 16 2018-03-10T20:10:33 GCA_053203845.1 819556 52 17138_3#15 GPS_ZA_3054-sc-2278895 South Africa 17138_3#15 SAMEA3354287 1313 Generic.1.0 87.85 SRA category_na live 2019-04-18T15:38:58Z GPSC137 PRJEB3084 SC SC 16 2278895 2019-04-18T15:38:58Z 2015-10-13T00:00:00.000 44072_44096 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAATSC01 2014 GPSC137 substr. ST3983 2015-10-13T13:58:32Z Prokka current 16 GPS_ZA_3054-sc-2278895 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAATSC01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-11 GPSC137 species_match 98.82 SAMEA3431401 2 Streptococcus pneumoniae 94.65 Streptococcus pneumoniae PRJEB3084 2 na 628250 type Streptococcus pneumoniae 2019-05-10 9N 9N Homo sapiens 2010 Streptococcus pneumoniae Streptococcus pneumoniae ERS740686 SC 2009 2016-01-20T08:06:45.743 2026014 94.65 1313 2061 Streptococcus pneumoniae 2024-02-06T15:58:45.000 2026103 410034 2026014 blood Homo sapiens Pneumonia from large multi-isolate project ST3983 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901313695.1 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAZLW000000000.1 2016-01-19T09:16:43Z GCA_901313695.1 haploid public GPS_US_PATH4011-sc-2296575 87.39 16 2018-03-10T20:15:33 GCA_053203845.1 802032 51 18090_1#120 GPS_US_PATH4011-sc-2296575 Qatar 18090_1#120 SAMEA3431401 1313 Generic.1.0 87.39 SRA category_na live 2019-04-18T16:01:14Z GPSC137 PRJEB3084 SC SC 15 2296575 2019-04-18T16:01:14Z 2016-01-19T00:00:00.000 PATH4011 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAZLW01 2009 GPSC137 substr. ST3983 2016-01-19T09:16:43Z Prokka current 15 GPS_US_PATH4011-sc-2296575 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAZLW01 Scaffold SOURCE_DATABASE_GENBANK Qatar 2019-05-10 GPSC137 species_match 98.82 SAMEA104035558 2 Streptococcus pneumoniae 91.11 Streptococcus pneumoniae PRJEB3084 2 na 306919 type Streptococcus pneumoniae 2019-05-15 9N 9N Homo sapiens 2127 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699451 SC 2012 2017-08-10T16:09:58.580 2142164 91.11 1313 2182 Streptococcus pneumoniae 2024-02-06T15:52:17.000 2142164 2245STDY6835633 306919 2142160 blood Homo sapiens IPD from large multi-isolate project ST517 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901333335.1 type Streptococcus pneumoniae blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABCJA000000000.1 2017-08-08T13:54:44Z GCA_901333335.1 haploid public a9ae7f00-1f66-11e7-b93e-3c4a9275d6c8 88.94 21 2017-08-10T17:09:56.540 GCA_053203845.1 846331 55 22841_1#172 a9ae7f00-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_1#172 SAMEA104035558 1313 Generic.1.0 88.94 SRA category_na live 2019-04-18T15:32:29Z GPSC16 PRJEB3084 SC SC 21 3052308 2019-04-18T15:32:29Z 2017-08-08T00:00:00.000 26351 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABCJA01 2012 GPSC16 substr. ST517 2017-08-08T13:54:44Z Prokka current 21 a9ae7f00-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABCJA01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-15 GPSC16 species_match 98.86 SAMEA104035209 3 Streptococcus pneumoniae 90.67 Streptococcus pneumoniae PRJEB3084 3 na 306915 type Streptococcus pneumoniae 2019-05-21 9N 9N Homo sapiens 2198 Streptococcus pneumoniae Streptococcus pneumoniae ERS1699102 SC 2010 2017-08-10T16:09:50.993 2177674 90.67 1313 2251 Streptococcus pneumoniae 2024-02-06T15:52:04.000 2177674 2245STDY6835280 306915 2177674 blood Homo sapiens IPD from large multi-isolate project ST517 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901293835.1 type Streptococcus pneumoniae blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAWOB000000000.1 2017-08-08T13:54:42Z GCA_901293835.1 haploid public 8a7b6f80-1f66-11e7-b93e-3c4a9275d6c8 89.98 24 2017-08-10T17:09:46.650 GCA_053203845.1 860702 53 22841_1#16 8a7b6f80-1f66-11e7-b93e-3c4a9275d6c8 Israel 22841_1#16 SAMEA104035209 1313 Generic.1.0 89.98 SRA category_na live 2019-04-18T15:32:25Z GPSC16 PRJEB3084 SC SC 24 3051955 2019-04-18T15:32:25Z 2017-08-08T00:00:00.000 48743 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAWOB01 2010 GPSC16 substr. ST517 2017-08-08T13:54:42Z Prokka current 24 8a7b6f80-1f66-11e7-b93e-3c4a9275d6c8 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAWOB01 Contig SOURCE_DATABASE_GENBANK Israel 2019-05-21 GPSC16 species_match 98.82 SAMEA2382568 4 Streptococcus pneumoniae 93.26 Streptococcus pneumoniae 1313 PRJEB4909 5 current na 157222 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2054 Streptococcus pneumoniae Streptococcus pneumoniae ERS408893 SC 2006/2012 v1.2.4 2014-07-03T08:07:00.276 99.47 2085845 93.26 1313 2100 2024-02-06T06:43:46.000 2087358 115078 2085845 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900026525.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FCWP00000000.1 2014-07-02T15:07:58Z GCA_900026525.1 haploid public 2111269-sc-1869813 88.65 0.31 37 2015-08-10T19:42:10 GCA_053203845.1 825513 46 12673_6#23 2111269-sc-1869813 Netherlands 12673_6#23 SAMEA2382568 1313 GCF_900026525.1 Generic.1.0 88.65 SRA GCF_900026525.1 category_na live 2018-03-09T10:40:57Z 2842STDY5753108 PRJEB4909 GCF_900026525.1-RS_2025_09_21 SC SC 32 1869813 2018-03-09T10:40:57Z 2014-07-02T00:00:00.000 2111269 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCWP01 2006/2012 2842STDY5753108 2014-07-02T15:07:58Z Prokka current 32 2111269-sc-1869813 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCWP01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753108 species_match 98.86 SAMEA2382568 4 Streptococcus pneumoniae 93.26 Streptococcus pneumoniae 1313 PRJEB4909 5 current na Best-placed reference protein set; GeneMarkS-2+ 157222 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1941 Streptococcus pneumoniae Streptococcus pneumoniae ERS408893 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-03T08:07:00.276 99.47 2085845 93.26 1313 2152 2024-02-06T06:43:46.000 2087358 115078 2085845 CSF Homo sapiens Streptococcus pneumoniae Disease 160 EBI 100 GCA_053203845.1 GCF_900026525.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900026525.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FCWP00000000.1 2014-07-02T15:07:58Z GCF_900026525.1 haploid public 2111269-sc-1869813 88.65 0.31 37 2015-08-10T19:42:10 GCA_053203845.1 825513 51 12673_6#23 2111269-sc-1869813 Netherlands 12673_6#23 SAMEA2382568 1313 GCA_900026525.1 Generic.1.0 88.65 SRA GCA_900026525.1 category_na live 2018-03-09T10:40:57Z 2842STDY5753108 PRJEB4909 Annotation submitted by SC SC SC 32 1869813 2018-03-09T10:40:57Z 2014-07-02T00:00:00.000 2111269 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCWP01 2006/2012 2842STDY5753108 6.10 2014-07-02T15:07:58Z Prokka current 32 2111269-sc-1869813 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCWP01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753108 species_match 98.86 SAMEA2239118 3 Streptococcus pneumoniae 94.34 Streptococcus pneumoniae 1313 PRJEB4909 4 current na 197462 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2065 Streptococcus pneumoniae Streptococcus pneumoniae ERS367930 SC 2006/2012 v1.2.4 2014-05-07T08:35:21.850 99.47 2084885 94.34 1313 2113 2024-02-06T05:03:06.000 2088771 110545 2084885 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900019425.1 type CSF 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FDSD00000000.1 2014-03-18T09:35:30Z GCA_900019425.1 haploid public 2000223-sc-2013-11-05T12:08:13Z-1750488 89.64 0.31 44 2015-08-10T19:24:43 GCA_053203845.1 824993 48 11860_7#79 2000223-sc-2013-11-05T12:08:13Z-1750488 Netherlands 11860_7#79 SAMEA2239118 1313 GCF_900019425.1 Generic.1.0 89.64 SRA GCF_900019425.1 category_na live 2018-03-09T10:27:29Z 2842STDY5644499 PRJEB4909 GCF_900019425.1-RS_2026_01_11 SC SC 29 1750488 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2000223 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDSD01 2006/2012 2842STDY5644499 2014-03-18T09:35:30Z Prokka current 29 2000223-sc-2013-11-05T12:08:13Z-1750488 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDSD01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644499 species_match 98.82 SAMEA2239118 3 Streptococcus pneumoniae 94.34 Streptococcus pneumoniae 1313 PRJEB4909 4 current na Best-placed reference protein set; GeneMarkS-2+ 197462 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1942 Streptococcus pneumoniae Streptococcus pneumoniae ERS367930 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:21.850 99.47 2084885 94.34 1313 2165 2024-02-06T05:03:06.000 2088771 110545 2084885 CSF Homo sapiens Streptococcus pneumoniae Disease 170 EBI 100 GCA_053203845.1 GCF_900019425.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900019425.1 type CSF 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FDSD00000000.1 2014-03-18T09:35:30Z GCF_900019425.1 haploid public 2000223-sc-2013-11-05T12:08:13Z-1750488 89.64 0.31 44 2015-08-10T19:24:43 GCA_053203845.1 824993 53 11860_7#79 2000223-sc-2013-11-05T12:08:13Z-1750488 Netherlands 11860_7#79 SAMEA2239118 1313 GCA_900019425.1 Generic.1.0 89.64 SRA GCA_900019425.1 category_na live 2018-03-09T10:27:29Z 2842STDY5644499 PRJEB4909 Annotation submitted by SC SC SC 29 1750488 2018-03-09T10:27:29Z 2014-03-18T00:00:00.000 2000223 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDSD01 2006/2012 2842STDY5644499 6.10 2014-03-18T09:35:30Z Prokka current 29 2000223-sc-2013-11-05T12:08:13Z-1750488 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDSD01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644499 species_match 98.82 SAMEA2238755 5 Streptococcus pneumoniae 94.5 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 137820 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1999 Streptococcus pneumoniae Streptococcus pneumoniae ERS367567 SC 2006/2012 v1.2.4 2014-05-13T08:06:00.886 99.47 2047942 94.5 1313 2046 2024-02-06T05:04:22.000 2050247 99640 2047942 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900018515.1 type CSF 98.88 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FEFS00000000.1 2014-05-12T16:58:20Z GCA_900018515.1 haploid public 2100262-sc-2013-11-05T12:01:53Z-1750118 88.19 0.31 40 2018-03-10T18:57:52 GCA_053203845.1 809926 47 12273_1#90 2100262-sc-2013-11-05T12:01:53Z-1750118 Netherlands 12273_1#90 SAMEA2238755 1313 GCF_900018515.1 Generic.1.0 88.19 SRA GCF_900018515.1 category_na live 2018-03-09T10:27:39Z 2842STDY5644129 PRJEB4909 GCF_900018515.1-RS_2026_01_25 SC SC 31 1750118 2018-03-09T10:27:39Z 2014-05-12T00:00:00.000 2100262 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEFS01 2006/2012 2842STDY5644129 2014-05-12T16:58:20Z Prokka current 31 2100262-sc-2013-11-05T12:01:53Z-1750118 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEFS01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644129 species_match 98.88 SAMEA2238755 5 Streptococcus pneumoniae 94.5 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 137820 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1885 Streptococcus pneumoniae Streptococcus pneumoniae ERS367567 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-13T08:06:00.886 99.47 2047942 94.5 1313 2096 2024-02-06T05:04:22.000 2050247 99640 2047942 CSF Homo sapiens Streptococcus pneumoniae Disease 159 EBI 100 GCA_053203845.1 GCF_900018515.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900018515.1 type CSF 98.88 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FEFS00000000.1 2014-05-12T16:58:20Z GCF_900018515.1 haploid public 2100262-sc-2013-11-05T12:01:53Z-1750118 88.19 0.31 40 2018-03-10T18:57:52 GCA_053203845.1 809926 52 12273_1#90 2100262-sc-2013-11-05T12:01:53Z-1750118 Netherlands 12273_1#90 SAMEA2238755 1313 GCA_900018515.1 Generic.1.0 88.19 SRA GCA_900018515.1 category_na live 2018-03-09T10:27:39Z 2842STDY5644129 PRJEB4909 Annotation submitted by SC SC SC 31 1750118 2018-03-09T10:27:39Z 2014-05-12T00:00:00.000 2100262 https://www.ncbi.nlm.nih.gov/Traces/wgs/FEFS01 2006/2012 2842STDY5644129 6.10 2014-05-12T16:58:20Z Prokka current 31 2100262-sc-2013-11-05T12:01:53Z-1750118 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEFS01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644129 species_match 98.88 SAMEA2521624 5 Streptococcus pneumoniae 92.61 Streptococcus pneumoniae 1313 PRJEB3084 7 current na 133831 type Streptococcus pneumoniae 2019-05-13 9N 9N species Homo sapiens 2013 Streptococcus pneumoniae Streptococcus pneumoniae ERS455164 SC 2012 v1.2.4 2014-09-17T09:08:15.066 99.47 2073411 92.61 1313 2060 Streptococcus pneumoniae 2024-02-06T15:55:08.000 2076261 93485 2073409 blood Homo sapiens Streptococcus pneumoniae IPD ST632 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900053075.2 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FHSH00000000.2 2014-09-16T09:22:31Z GCA_900053075.2 haploid public 2012218039-sc-1946916 87.51 0.31 40 2018-03-10T19:14:18 GCA_053203845.1 819416 47 13414_2#73 2012218039-sc-1946916 USA 13414_2#73 SAMEA2521624 1313 GCF_900053075.2 Generic.1.0 87.51 SRA GCF_900053075.2 category_na live 2019-04-18T15:39:23Z GPSC16 PRJEB3084 GCF_900053075.2-RS_2025_12_31 SC SC 29 1946916 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012218039 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSH02 2012 2245STDY5819590 2014-09-16T09:22:31Z Prokka current 29 2012218039-sc-1946916 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSH02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-13 GPSC16 species_match 98.82 SAMEA2521624 5 Streptococcus pneumoniae 92.61 Streptococcus pneumoniae 1313 PRJEB3084 7 current na Best-placed reference protein set; GeneMarkS-2+ 133831 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-31 9N 9N species Homo sapiens 1902 Streptococcus pneumoniae Streptococcus pneumoniae ERS455164 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2012 v1.2.4 2014-09-17T09:08:15.066 99.47 2073411 92.61 1313 2128 Streptococcus pneumoniae 2024-02-06T15:55:08.000 2076261 93485 2073409 blood Homo sapiens Streptococcus pneumoniae IPD 173 ST632 EBI 100 GCA_053203845.1 GCF_900053075.2-RS_2025_12_31 SLX Streptococcus pneumoniae GCF_900053075.2 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FHSH00000000.2 2014-09-16T09:22:31Z GCF_900053075.2 haploid public 2012218039-sc-1946916 87.51 0.31 40 2018-03-10T19:14:18 GCA_053203845.1 819416 53 13414_2#73 2012218039-sc-1946916 USA 13414_2#73 SAMEA2521624 1313 GCA_900053075.2 Generic.1.0 87.51 SRA GCA_900053075.2 category_na live 2019-04-18T15:39:23Z GPSC16 PRJEB3084 Annotation submitted by SC SC SC 29 1946916 2019-04-18T15:39:23Z 2014-09-16T00:00:00.000 2012218039 https://www.ncbi.nlm.nih.gov/Traces/wgs/FHSH02 2012 GPSC16 substr. ST632 6.10 2014-09-16T09:22:31Z Prokka current 29 2012218039-sc-1946916 Generic Global_Pneumococcal_Sequencing__GPS__study_I FHSH02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-13 GPSC16 species_match 98.82 SAMEA1026665 9 Streptococcus pneumoniae 93.0 Streptococcus pneumoniae 1313 PRJEB2417 9 current na 78815 type Streptococcus pneumoniae 2017-06-28 9N 9N species Homo sapiens 2091 Streptococcus pneumoniae ERS023409 SC 2010-02-09 v1.2.4 2012-01-20T20:19:25.350 99.16 2099497 93.0 1313 2131 2017-06-24T15:54:54.000 2099497 78815 2099468 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900192575.1 type Nasophaynx 98.81 OK 39.5 Streptococcus pneumoniae 67.7037 https://www.ncbi.nlm.nih.gov/nuccore/FYUF00000000.1 2011-09-14 GCA_900192575.1 haploid ERS023409 88.98 0.39 55 2017-06-28T08:06:10 GCA_053203845.1 831162 40 6486_6#3 United Kingdom UoS4350-sc-2011-02-14-1078463; 6486_63 1313 GCF_900192575.1 Generic.1.0 88.98 SRA Sample Description GCF_900192575.1 category_na live 2017-06-22 UoS4350 PRJEB2417 GCF_900192575.1-RS_2025_09_01 SC 55 1078463 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYUF01 2010-02-09 UoS4350 Prokka current 55 ERS023409 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYUF01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-28 UoS4350 species_match 98.81 SAMEA1026665 9 Streptococcus pneumoniae 93.0 Streptococcus pneumoniae 1313 PRJEB2417 9 current na Best-placed reference protein set; GeneMarkS-2+ 78815 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-01 9N 9N species Homo sapiens 1991 Streptococcus pneumoniae ERS023409 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-02-09 v1.2.4 2012-01-20T20:19:25.350 99.16 2099497 93.0 1313 2195 2017-06-24T15:54:54.000 2099497 78815 2099468 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 162 EBI 100 GCA_053203845.1 GCF_900192575.1-RS_2025_09_01 SLX Streptococcus pneumoniae GCF_900192575.1 type Nasophaynx 98.81 OK 39.5 Streptococcus pneumoniae 67.7037 https://www.ncbi.nlm.nih.gov/nuccore/FYUF00000000.1 2011-09-14 GCF_900192575.1 haploid ERS023409 88.98 0.39 55 2017-06-28T08:06:10 GCA_053203845.1 831162 42 6486_6#3 United Kingdom UoS4350-sc-2011-02-14-1078463; 6486_63 1313 GCA_900192575.1 Generic.1.0 88.98 SRA Sample Description GCA_900192575.1 category_na live 2017-06-22 UoS4350 PRJEB2417 Annotation submitted by SC SC 55 1078463 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYUF01 2010-02-09 UoS4350 6.10 Prokka current 55 ERS023409 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYUF01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-28 UoS4350 species_match 98.81 SAMEA1032529 9 Streptococcus pneumoniae 93.6 Streptococcus pneumoniae 1313 PRJEB2632 9 current na 73240 type Streptococcus pneumoniae 2015-07-29 9N 9N species Homo sapiens 1988 Streptococcus pneumoniae Streptococcus pneumoniae ERS044075 SC 2001 v1.2.4 2012-01-23T19:54:02.143 99.26 2038136 93.6 1313 2019 2024-02-05T17:30:47.000 2038136 73240 2038136 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001162885.2 type nasopharynx 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CNTM00000000.2 2012-01-19T13:56:12Z GCA_001162885.2 haploid public 132571-sc-2011-08-01T09:45:24Z-1250140 86.93 0.31 126 2015-09-10T08:19:58 GCA_053203845.1 808180 31 6999_4#18 132571-sc-2011-08-01T09:45:24Z-1250140 USA: Massachesetts Streptococcus pneumoniae SAMEA1032529 1313 GCF_001162885.1 Generic.1.0 86.93 SRA GCF_001162885.1 category_na live 2018-03-09T09:53:50Z 132571 PRJEB2632 GCF_001162885.1-RS_2026_01_22 SC SC 126 2018-03-09T09:53:50Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNTM02 2001 132571 2012-01-19T13:56:12Z Velvet current 126 132571-sc-2011-08-01T09:45:24Z-1250140 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNTM02 Contig Streptococcus pneumoniae SOURCE_DATABASE_GENBANK USA: Massachesetts 2015-07-29 132571 species_match 98.76 SAMEA1032529 9 Streptococcus pneumoniae 93.6 Streptococcus pneumoniae 1313 PRJEB2632 9 current na Best-placed reference protein set; GeneMarkS-2+ 73240 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-22 9N 9N species Homo sapiens 1931 Streptococcus pneumoniae Streptococcus pneumoniae ERS044075 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2001 v1.2.4 2012-01-23T19:54:02.143 99.26 2038136 93.6 1313 2151 2024-02-05T17:30:47.000 2038136 73240 2038136 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 169 EBI 100 GCA_053203845.1 GCF_001162885.1-RS_2026_01_22 SLX Streptococcus pneumoniae GCF_001162885.1 type nasopharynx 98.76 ERC000011 OK 39.5 Streptococcus pneumoniae 74.8031 https://www.ncbi.nlm.nih.gov/nuccore/CNTM00000000.2 2012-01-19T13:56:12Z GCF_001162885.1 haploid public 132571-sc-2011-08-01T09:45:24Z-1250140 86.93 0.31 126 2015-09-10T08:19:58 GCA_053203845.1 808180 51 6999_4#18 132571-sc-2011-08-01T09:45:24Z-1250140 USA: Massachesetts Streptococcus pneumoniae SAMEA1032529 1313 GCA_001162885.2 Generic.1.0 86.93 SRA GCA_001162885.2 category_na live 2018-03-09T09:53:50Z 132571 PRJEB2632 Annotation submitted by SC SC SC 126 2018-03-09T09:53:50Z 2012-01-19T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CNTM02 2001 132571 6.10 2012-01-19T13:56:12Z Velvet current 126 132571-sc-2011-08-01T09:45:24Z-1250140 Generic Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment CNTM02 Contig Streptococcus pneumoniae SOURCE_DATABASE_REFSEQ USA: Massachesetts 2015-07-29 132571 species_match 98.76 SAMEA1026552 11 Streptococcus pneumoniae 92.85 Streptococcus pneumoniae 1313 PRJEB2417 11 current na 72073 type Streptococcus pneumoniae 2017-06-27 9N 9N species Homo sapiens 1966 Streptococcus pneumoniae ERS023024 SC 2006-12-06 v1.2.4 2011-09-13T21:53:41.133 99.13 2006382 92.85 1313 2006 2017-06-24T15:27:01.000 2006382 72073 2006381 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_001457635.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900188815.1 type Nasophaynx 98.74 OK 39.5 Streptococcus pneumoniae 63.7667 https://www.ncbi.nlm.nih.gov/nuccore/FYFV00000000.1 2011-09-06 GCA_900188815.1 haploid ERS023024 88.25 0.31 57 2017-06-28T08:05:57 GCA_001457635.1 796614 40 6470_3#19 United Kingdom UoS0080-sc-2011-02-14-1078079; 6470_319 1313 GCF_900188815.1 Generic.1.0 88.25 SRA Sample Description GCF_900188815.1 category_na live 2017-06-22 UoS0080 PRJEB2417 GCF_900188815.1-RS_2025_09_04 SC 57 1078079 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYFV01 2006-12-06 UoS0080 Prokka current 57 ERS023024 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYFV01 Contig SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS0080 species_match 98.74 SAMEA1026552 11 Streptococcus pneumoniae 92.85 Streptococcus pneumoniae 1313 PRJEB2417 11 current na Best-placed reference protein set; GeneMarkS-2+ 72073 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-04 9N 9N species Homo sapiens 1869 Streptococcus pneumoniae ERS023024 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006-12-06 v1.2.4 2011-09-13T21:53:41.133 99.13 2006382 92.85 1313 2072 2017-06-24T15:27:01.000 2006382 72073 2006381 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 161 EBI 100 GCA_001457635.1 GCF_900188815.1-RS_2025_09_04 SLX Streptococcus pneumoniae GCF_900188815.1 type Nasophaynx 98.74 OK 39.5 Streptococcus pneumoniae 63.7667 https://www.ncbi.nlm.nih.gov/nuccore/FYFV00000000.1 2011-09-06 GCF_900188815.1 haploid ERS023024 88.25 0.31 57 2017-06-28T08:05:57 GCA_001457635.1 796614 42 6470_3#19 United Kingdom UoS0080-sc-2011-02-14-1078079; 6470_319 1313 GCA_900188815.1 Generic.1.0 88.25 SRA Sample Description GCA_900188815.1 category_na live 2017-06-22 UoS0080 PRJEB2417 Annotation submitted by SC SC 57 1078079 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYFV01 2006-12-06 UoS0080 6.10 Prokka current 57 ERS023024 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYFV01 Contig SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS0080 species_match 98.74 SAMEA1026523 9 Streptococcus pneumoniae 93.47 Streptococcus pneumoniae 1313 PRJEB2417 9 current na 56758 type Streptococcus pneumoniae 2017-06-27 9N 9N species Homo sapiens 2005 Streptococcus pneumoniae ERS023396 SC 2010-02-02 v1.2.4 2012-01-20T20:19:18.400 99.03 2060907 93.47 1313 2046 2017-06-24T15:53:18.000 2060950 56758 2060901 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900192445.1 type Nasophaynx 98.82 OK 39.5 Streptococcus pneumoniae 48.9021 https://www.ncbi.nlm.nih.gov/nuccore/FYTX00000000.1 2011-09-14 GCA_900192445.1 haploid ERS023396 87.78 0.31 64 2017-06-28T08:06:09 GCA_053203845.1 815824 41 6486_5#12 United Kingdom UoS4311-sc-2011-02-14-1078450; 6486_512 1313 GCF_900192445.1 Generic.1.0 87.78 SRA Sample Description GCF_900192445.1 category_na live 2017-06-22 UoS4311 PRJEB2417 GCF_900192445.1-RS_2025_09_01 SC 63 1078450 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYTX01 2010-02-02 UoS4311 Prokka current 63 ERS023396 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYTX01 Scaffold SOURCE_DATABASE_GENBANK United Kingdom 2017-06-27 UoS4311 species_match 98.82 SAMEA1026523 9 Streptococcus pneumoniae 93.47 Streptococcus pneumoniae 1313 PRJEB2417 9 current na Best-placed reference protein set; GeneMarkS-2+ 56758 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-01 9N 9N species Homo sapiens 1905 Streptococcus pneumoniae ERS023396 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2010-02-02 v1.2.4 2012-01-20T20:19:18.400 99.03 2060907 93.47 1313 2114 2017-06-24T15:53:18.000 2060950 56758 2060901 Nasophaynx Homo sapiens Streptococcus pneumoniae Carraige 167 EBI 100 GCA_053203845.1 GCF_900192445.1-RS_2025_09_01 SLX Streptococcus pneumoniae GCF_900192445.1 type Nasophaynx 98.82 OK 39.5 Streptococcus pneumoniae 48.9021 https://www.ncbi.nlm.nih.gov/nuccore/FYTX00000000.1 2011-09-14 GCF_900192445.1 haploid ERS023396 87.78 0.31 64 2017-06-28T08:06:09 GCA_053203845.1 815824 42 6486_5#12 United Kingdom UoS4311-sc-2011-02-14-1078450; 6486_512 1313 GCA_900192445.1 Generic.1.0 87.78 SRA Sample Description GCA_900192445.1 category_na live 2017-06-22 UoS4311 PRJEB2417 Annotation submitted by SC SC 63 1078450 2017-06-23T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/FYTX01 2010-02-02 UoS4311 6.10 Prokka current 63 ERS023396 Generic Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK FYTX01 Scaffold SOURCE_DATABASE_REFSEQ United Kingdom 2017-06-27 UoS4311 species_match 98.82 SAMEA3353892 2 Streptococcus pneumoniae 93.65 Streptococcus pneumoniae PRJEB3084 2 na 395173 type Streptococcus pneumoniae 2019-05-11 9N 9N Homo sapiens 2040 Streptococcus pneumoniae Streptococcus pneumoniae ERS708247 SC 2010 2015-10-14T08:11:05.023 2055684 93.65 1313 2093 Streptococcus pneumoniae 2024-02-06T15:57:24.000 2055760 395173 2055683 NP Homo sapiens Carriage from large multi-isolate project ST3983 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901219925.1 type NP 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAALQK000000000.1 2015-10-13T13:58:53Z GCA_901219925.1 haploid public GPS_ZA_carriage_SP1791-sc-2278496 87.73 21 2018-03-10T20:10:15 GCA_053203845.1 815019 53 17175_6#86 GPS_ZA_carriage_SP1791-sc-2278496 South Africa 17175_6#86 SAMEA3353892 1313 Generic.1.0 87.73 SRA category_na live 2019-04-18T15:56:58Z GPSC137 PRJEB3084 SC SC 20 2278496 2019-04-18T15:56:58Z 2015-10-13T00:00:00.000 10442C https://www.ncbi.nlm.nih.gov/Traces/wgs/CAALQK01 2010 GPSC137 substr. ST3983 2015-10-13T13:58:53Z Prokka current 20 GPS_ZA_carriage_SP1791-sc-2278496 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAALQK01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-11 GPSC137 species_match 98.84 SAMEA3354203 4 Streptococcus pneumoniae 89.16 Streptococcus pneumoniae PRJEB3084 4 na 205017 type Streptococcus pneumoniae 2019-05-22 9N 9N Homo sapiens 2145 Streptococcus pneumoniae Streptococcus pneumoniae ERS708558 SC 2014 2015-10-14T08:11:13.016 2168513 89.16 1313 2198 Streptococcus pneumoniae 2024-02-06T15:57:41.000 2168513 205017 2168505 blood Homo sapiens IPD from large multi-isolate project ST5624 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901256925.1 type blood 98.69 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAARDI000000000.1 2015-10-13T13:58:35Z GCA_901256925.1 haploid public GPS_ZA_3026-sc-2278811 88.11 30 2018-03-10T20:10:29 GCA_053203845.1 856406 53 17150_6#65 GPS_ZA_3026-sc-2278811 South Africa 17150_6#65 SAMEA3354203 1313 Generic.1.0 88.11 SRA category_na live 2019-04-18T15:57:01Z GPSC125 PRJEB3084 SC SC 30 2278811 2019-04-18T15:57:01Z 2015-10-13T00:00:00.000 44028 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAARDI01 2014 GPSC125 substr. ST5624 2015-10-13T13:58:35Z Prokka current 30 GPS_ZA_3026-sc-2278811 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAARDI01 Contig SOURCE_DATABASE_GENBANK South Africa 2019-05-22 GPSC125 species_match 98.69 SAMEA2336203 3 Streptococcus pneumoniae 93.06 Streptococcus pneumoniae PRJEB3084 4 na 361762 type Streptococcus pneumoniae 2019-05-12 9N 9N Homo sapiens 2052 Streptococcus pneumoniae Streptococcus pneumoniae ERS394397 SC 2009 2014-05-13T08:06:07.073 2076463 93.06 1313 2101 Streptococcus pneumoniae 2024-02-06T15:55:00.000 2078694 195673 2076456 blood Homo sapiens IPD from large multi-isolate project ST66 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901265935.1 type blood 98.83 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAASLF000000000.1 2014-05-12T16:56:55Z GCA_901265935.1 haploid public 2010210016-sc-1811135 88.06 36 2018-03-10T18:57:57 GCA_053203845.1 822984 49 12290_2#1 2010210016-sc-1811135 USA 12290_2#1 SAMEA2336203 1313 Generic.1.0 88.06 SRA category_na live 2019-04-18T15:39:21Z GPSC16 PRJEB3084 SC SC 24 1811135 2019-04-18T15:39:21Z 2014-05-12T00:00:00.000 2010210016 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAASLF01 2009 GPSC16 substr. ST66 2014-05-12T16:56:55Z Prokka current 24 2010210016-sc-1811135 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAASLF01 Scaffold SOURCE_DATABASE_GENBANK USA 2019-05-12 GPSC16 species_match 98.83 SAMEA2658813 3 Streptococcus pneumoniae 95.16 Streptococcus pneumoniae PRJEB3084 6 na 274904 type Streptococcus pneumoniae 2019-05-10 9N 9N Homo sapiens 1976 Streptococcus pneumoniae Streptococcus pneumoniae ERS508841 SC 2010 2015-01-29T08:38:03.906 2010474 95.16 1313 2023 Streptococcus pneumoniae 2024-02-06T15:55:53.000 2012846 161582 2010474 blood Homo sapiens IPD from large multi-isolate project ST3983 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901314435.1 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAZOT000000000.1 2015-01-14T09:35:10Z GCA_901314435.1 haploid public GPS_ZA_1837-sc-2021422 87.19 27 2018-03-10T19:28:12 GCA_053203845.1 796578 47 14566_5#80 GPS_ZA_1837-sc-2021422 South Africa 14566_5#80 SAMEA2658813 1313 Generic.1.0 87.19 SRA category_na live 2019-04-18T15:56:36Z GPSC137 PRJEB3084 SC SC 18 2021422 2019-04-18T15:56:36Z 2015-01-14T00:00:00.000 27112 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAZOT01 2010 GPSC137 substr. ST3983 2015-01-14T09:35:10Z Prokka current 18 GPS_ZA_1837-sc-2021422 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAZOT01 Scaffold SOURCE_DATABASE_GENBANK South Africa 2019-05-10 GPSC137 species_match 98.84 SAMEA2239271 5 Streptococcus pneumoniae 94.61 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 197036 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 1997 Streptococcus pneumoniae Streptococcus pneumoniae ERS368083 SC 2006/2012 v1.2.4 2014-05-07T08:35:33.976 99.47 2044155 94.61 1313 2044 2024-02-06T05:07:28.000 2047935 121959 2044154 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900019465.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FDUQ00000000.1 2014-03-18T09:35:30Z GCA_900019465.1 haploid public 2012311-sc-2013-11-05T12:10:52Z-1750643 88.13 0.31 40 2015-08-10T19:24:50 GCA_053203845.1 808510 47 11861_5#46 2012311-sc-2013-11-05T12:10:52Z-1750643 Netherlands 11861_5#46 SAMEA2239271 1313 GCF_900019465.1 Generic.1.0 88.13 SRA GCF_900019465.1 category_na live 2018-03-09T10:28:02Z 2842STDY5644654 PRJEB4909 GCF_900019465.1-RS_2025_09_21 SC SC 24 1750643 2018-03-09T10:28:02Z 2014-03-18T00:00:00.000 2012311 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDUQ01 2006/2012 2842STDY5644654 2014-03-18T09:35:30Z Prokka current 24 2012311-sc-2013-11-05T12:10:52Z-1750643 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDUQ01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644654 species_match 98.86 SAMEA2239271 5 Streptococcus pneumoniae 94.61 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 197036 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1899 Streptococcus pneumoniae Streptococcus pneumoniae ERS368083 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:33.976 99.47 2044155 94.61 1313 2110 2024-02-06T05:07:28.000 2047935 121959 2044154 CSF Homo sapiens Streptococcus pneumoniae Disease 159 EBI 100 GCA_053203845.1 GCF_900019465.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900019465.1 type CSF 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FDUQ00000000.1 2014-03-18T09:35:30Z GCF_900019465.1 haploid public 2012311-sc-2013-11-05T12:10:52Z-1750643 88.13 0.31 40 2015-08-10T19:24:50 GCA_053203845.1 808510 52 11861_5#46 2012311-sc-2013-11-05T12:10:52Z-1750643 Netherlands 11861_5#46 SAMEA2239271 1313 GCA_900019465.1 Generic.1.0 88.13 SRA GCA_900019465.1 category_na live 2018-03-09T10:28:02Z 2842STDY5644654 PRJEB4909 Annotation submitted by SC SC SC 24 1750643 2018-03-09T10:28:02Z 2014-03-18T00:00:00.000 2012311 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDUQ01 2006/2012 2842STDY5644654 6.10 2014-03-18T09:35:30Z Prokka current 24 2012311-sc-2013-11-05T12:10:52Z-1750643 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDUQ01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644654 species_match 98.86 SAMEA2238849 4 Streptococcus pneumoniae 94.95 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 214349 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2054 Streptococcus pneumoniae Streptococcus pneumoniae ERS367661 SC 2006/2012 v1.2.4 2014-05-07T08:35:01.516 99.22 2078486 94.95 1313 2100 2024-02-06T05:28:09.000 2082625 119029 2078485 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900031785.1 type CSF 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae 71.0838 https://www.ncbi.nlm.nih.gov/nuccore/FCUP00000000.1 2014-05-06T09:15:19Z GCA_900031785.1 haploid public 2104318-sc-2013-11-05T12:03:26Z-1750213 89.94 0.31 47 2015-08-10T19:24:28 GCA_053203845.1 822613 46 12216_4#89 2104318-sc-2013-11-05T12:03:26Z-1750213 Netherlands 12216_4#89 SAMEA2238849 1313 GCF_900031785.1 Generic.1.0 89.94 SRA GCF_900031785.1 category_na live 2018-03-09T10:30:30Z 2842STDY5644224 PRJEB4909 GCF_900031785.1-RS_2025_09_21 SC SC 30 1750213 2018-03-09T10:30:30Z 2014-05-06T00:00:00.000 2104318 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUP01 2006/2012 2842STDY5644224 2014-05-06T09:15:19Z Prokka current 30 2104318-sc-2013-11-05T12:03:26Z-1750213 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUP01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644224 species_match 98.81 SAMEA2238849 4 Streptococcus pneumoniae 94.95 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 214349 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 1958 Streptococcus pneumoniae Streptococcus pneumoniae ERS367661 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:01.516 99.22 2078486 94.95 1313 2168 2024-02-06T05:28:09.000 2082625 119029 2078485 CSF Homo sapiens Streptococcus pneumoniae Disease 157 EBI 100 GCA_053203845.1 GCF_900031785.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900031785.1 type CSF 98.81 ERC000011 OK 39.5 Streptococcus pneumoniae 71.0838 https://www.ncbi.nlm.nih.gov/nuccore/FCUP00000000.1 2014-05-06T09:15:19Z GCF_900031785.1 haploid public 2104318-sc-2013-11-05T12:03:26Z-1750213 89.94 0.31 47 2015-08-10T19:24:28 GCA_053203845.1 822613 53 12216_4#89 2104318-sc-2013-11-05T12:03:26Z-1750213 Netherlands 12216_4#89 SAMEA2238849 1313 GCA_900031785.1 Generic.1.0 89.94 SRA GCA_900031785.1 category_na live 2018-03-09T10:30:30Z 2842STDY5644224 PRJEB4909 Annotation submitted by SC SC SC 30 1750213 2018-03-09T10:30:30Z 2014-05-06T00:00:00.000 2104318 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCUP01 2006/2012 2842STDY5644224 6.10 2014-05-06T09:15:19Z Prokka current 30 2104318-sc-2013-11-05T12:03:26Z-1750213 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCUP01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644224 species_match 98.81 SAMEA2382789 5 Streptococcus pneumoniae 94.53 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 186203 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2005 Streptococcus pneumoniae Streptococcus pneumoniae ERS409114 SC 2006/2012 v1.2.4 2014-07-10T08:06:45.773 99.47 2047152 94.53 1313 2052 2024-02-06T09:23:31.000 2050918 113507 2047140 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900030655.1 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FDGV00000000.1 2014-07-09T17:25:44Z GCA_900030655.1 haploid public 2012311_II-sc-1870036 88.19 0.31 38 2015-08-10T19:43:35 GCA_053203845.1 809613 47 12718_4#54 2012311_II-sc-1870036 Netherlands 12718_4#54 SAMEA2382789 1313 GCF_900030655.1 Generic.1.0 88.19 SRA GCF_900030655.1 category_na live 2018-03-09T13:35:54Z 2842STDY5753331 PRJEB4909 GCF_900030655.1-RS_2025_09_28 SC SC 26 1870036 2018-03-09T13:35:54Z 2014-07-09T00:00:00.000 2012311_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDGV01 2006/2012 2842STDY5753331 2014-07-09T17:25:44Z Prokka current 26 2012311_II-sc-1870036 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDGV01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753331 species_match 98.86 SAMEA2382789 5 Streptococcus pneumoniae 94.53 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 186203 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1888 Streptococcus pneumoniae Streptococcus pneumoniae ERS409114 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-10T08:06:45.773 99.47 2047152 94.53 1313 2108 2024-02-06T09:23:31.000 2050918 113507 2047140 blood Homo sapiens Streptococcus pneumoniae Disease 168 EBI 100 GCA_053203845.1 GCF_900030655.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900030655.1 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FDGV00000000.1 2014-07-09T17:25:44Z GCF_900030655.1 haploid public 2012311_II-sc-1870036 88.19 0.31 38 2015-08-10T19:43:35 GCA_053203845.1 809613 52 12718_4#54 2012311_II-sc-1870036 Netherlands 12718_4#54 SAMEA2382789 1313 GCA_900030655.1 Generic.1.0 88.19 SRA GCA_900030655.1 category_na live 2018-03-09T13:35:54Z 2842STDY5753331 PRJEB4909 Annotation submitted by SC SC SC 26 1870036 2018-03-09T13:35:54Z 2014-07-09T00:00:00.000 2012311_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDGV01 2006/2012 2842STDY5753331 6.10 2014-07-09T17:25:44Z Prokka current 26 2012311_II-sc-1870036 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDGV01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753331 species_match 98.86 SAMEA2382688 4 Streptococcus pneumoniae 94.33 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 187863 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2062 Streptococcus pneumoniae Streptococcus pneumoniae ERS409013 SC 2006/2012 v1.2.4 2014-07-03T08:07:07.196 99.47 2085108 94.33 1313 2110 2024-02-06T09:23:30.000 2088313 113412 2085107 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900034095.1 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FDCZ00000000.1 2014-07-02T15:07:58Z GCA_900034095.1 haploid public 2000223_II-sc-1869934 89.64 0.31 43 2015-08-10T19:42:15 GCA_053203845.1 825079 48 12673_7#48 2000223_II-sc-1869934 Netherlands 12673_7#48 SAMEA2382688 1313 GCF_900034095.1 Generic.1.0 89.64 SRA GCF_900034095.1 category_na live 2018-03-09T13:35:54Z 2842STDY5753229 PRJEB4909 GCF_900034095.1-RS_2026_01_11 SC SC 30 1869934 2018-03-09T13:35:54Z 2014-07-02T00:00:00.000 2000223_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDCZ01 2006/2012 2842STDY5753229 2014-07-02T15:07:58Z Prokka current 30 2000223_II-sc-1869934 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDCZ01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753229 species_match 98.82 SAMEA2382688 4 Streptococcus pneumoniae 94.33 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 187863 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1956 Streptococcus pneumoniae Streptococcus pneumoniae ERS409013 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-03T08:07:07.196 99.47 2085108 94.33 1313 2175 2024-02-06T09:23:30.000 2088313 113412 2085107 blood Homo sapiens Streptococcus pneumoniae Disease 165 EBI 100 GCA_053203845.1 GCF_900034095.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900034095.1 type blood 98.82 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FDCZ00000000.1 2014-07-02T15:07:58Z GCF_900034095.1 haploid public 2000223_II-sc-1869934 89.64 0.31 43 2015-08-10T19:42:15 GCA_053203845.1 825079 54 12673_7#48 2000223_II-sc-1869934 Netherlands 12673_7#48 SAMEA2382688 1313 GCA_900034095.1 Generic.1.0 89.64 SRA GCA_900034095.1 category_na live 2018-03-09T13:35:54Z 2842STDY5753229 PRJEB4909 Annotation submitted by SC SC SC 30 1869934 2018-03-09T13:35:54Z 2014-07-02T00:00:00.000 2000223_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDCZ01 2006/2012 2842STDY5753229 6.10 2014-07-02T15:07:58Z Prokka current 30 2000223_II-sc-1869934 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDCZ01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753229 species_match 98.82 SAMEA2239285 4 Streptococcus pneumoniae 93.38 Streptococcus pneumoniae 1313 PRJEB4909 6 current na 147980 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2059 Streptococcus pneumoniae Streptococcus pneumoniae ERS368097 SC 2006/2012 v1.2.4 2014-05-07T08:35:35.496 99.01 2081507 93.38 1313 2105 2024-02-06T05:07:58.000 2084421 104736 2081506 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900022745.1 type CSF 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 48.0827 https://www.ncbi.nlm.nih.gov/nuccore/FDUW00000000.1 2014-03-18T09:35:31Z GCA_900022745.1 haploid public 2020051-sc-2013-11-05T12:11:05Z-1750658 88.58 0.31 37 2015-08-10T19:24:50 GCA_053203845.1 823084 46 11861_5#60 2020051-sc-2013-11-05T12:11:05Z-1750658 Netherlands 11861_5#60 SAMEA2239285 1313 GCF_900022745.1 Generic.1.0 88.58 SRA GCF_900022745.1 category_na live 2018-03-09T10:28:06Z 2842STDY5644669 PRJEB4909 GCF_900022745.1-RS_2026_01_11 SC SC 26 1750658 2018-03-09T10:28:06Z 2014-03-18T00:00:00.000 2020051 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDUW01 2006/2012 2842STDY5644669 2014-03-18T09:35:31Z Prokka current 26 2020051-sc-2013-11-05T12:11:05Z-1750658 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDUW01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644669 species_match 98.87 SAMEA2239285 4 Streptococcus pneumoniae 93.38 Streptococcus pneumoniae 1313 PRJEB4909 6 current na Best-placed reference protein set; GeneMarkS-2+ 147980 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1938 Streptococcus pneumoniae Streptococcus pneumoniae ERS368097 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:35.496 99.01 2081507 93.38 1313 2153 2024-02-06T05:07:58.000 2084421 104736 2081506 CSF Homo sapiens Streptococcus pneumoniae Disease 165 EBI 100 GCA_053203845.1 GCF_900022745.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900022745.1 type CSF 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 48.0827 https://www.ncbi.nlm.nih.gov/nuccore/FDUW00000000.1 2014-03-18T09:35:31Z GCF_900022745.1 haploid public 2020051-sc-2013-11-05T12:11:05Z-1750658 88.58 0.31 37 2015-08-10T19:24:50 GCA_053203845.1 823084 50 11861_5#60 2020051-sc-2013-11-05T12:11:05Z-1750658 Netherlands 11861_5#60 SAMEA2239285 1313 GCA_900022745.1 Generic.1.0 88.58 SRA GCA_900022745.1 category_na live 2018-03-09T10:28:06Z 2842STDY5644669 PRJEB4909 Annotation submitted by SC SC SC 26 1750658 2018-03-09T10:28:06Z 2014-03-18T00:00:00.000 2020051 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDUW01 2006/2012 2842STDY5644669 6.10 2014-03-18T09:35:31Z Prokka current 26 2020051-sc-2013-11-05T12:11:05Z-1750658 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDUW01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644669 species_match 98.87 SAMEA2382773 3 Streptococcus pneumoniae 94.43 Streptococcus pneumoniae 1313 PRJEB4909 4 current na 196947 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 1997 Streptococcus pneumoniae Streptococcus pneumoniae ERS409098 SC 2006/2012 v1.2.4 2014-07-10T08:06:45.040 99.31 2048170 94.43 1313 2044 2024-02-06T06:46:33.000 2051417 99636 2048166 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900030635.1 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FDGE00000000.1 2014-07-09T17:25:44Z GCA_900030635.1 haploid public 2010827_II-sc-1870020 88.14 0.31 39 2015-08-10T19:43:34 GCA_053203845.1 809931 47 12718_4#38 2010827_II-sc-1870020 Netherlands 12718_4#38 SAMEA2382773 1313 GCF_900030635.1 Generic.1.0 88.14 SRA GCF_900030635.1 category_na live 2018-03-09T10:41:30Z 2842STDY5753315 PRJEB4909 GCF_900030635.1-RS_2026_01_25 SC SC 26 1870020 2018-03-09T10:41:30Z 2014-07-09T00:00:00.000 2010827_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDGE01 2006/2012 2842STDY5753315 2014-07-09T17:25:44Z Prokka current 26 2010827_II-sc-1870020 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDGE01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753315 species_match 98.87 SAMEA2382773 3 Streptococcus pneumoniae 94.43 Streptococcus pneumoniae 1313 PRJEB4909 4 current na Best-placed reference protein set; GeneMarkS-2+ 196947 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1883 Streptococcus pneumoniae Streptococcus pneumoniae ERS409098 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-10T08:06:45.040 99.31 2048170 94.43 1313 2100 2024-02-06T06:46:33.000 2051417 99636 2048166 blood Homo sapiens Streptococcus pneumoniae Disease 164 EBI 100 GCA_053203845.1 GCF_900030635.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900030635.1 type blood 98.87 ERC000011 OK 39.5 Streptococcus pneumoniae 80.8719 https://www.ncbi.nlm.nih.gov/nuccore/FDGE00000000.1 2014-07-09T17:25:44Z GCF_900030635.1 haploid public 2010827_II-sc-1870020 88.14 0.31 39 2015-08-10T19:43:34 GCA_053203845.1 809931 53 12718_4#38 2010827_II-sc-1870020 Netherlands 12718_4#38 SAMEA2382773 1313 GCA_900030635.1 Generic.1.0 88.14 SRA GCA_900030635.1 category_na live 2018-03-09T10:41:30Z 2842STDY5753315 PRJEB4909 Annotation submitted by SC SC SC 26 1870020 2018-03-09T10:41:30Z 2014-07-09T00:00:00.000 2010827_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDGE01 2006/2012 2842STDY5753315 6.10 2014-07-09T17:25:44Z Prokka current 26 2010827_II-sc-1870020 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDGE01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753315 species_match 98.87 SAMEA2383214 6 Streptococcus pneumoniae 93.36 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 109243 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2053 Streptococcus pneumoniae Streptococcus pneumoniae ERS409539 SC 2006/2012 v1.2.4 2014-07-17T08:09:39.786 99.01 2079079 93.36 1313 2099 2024-02-06T06:52:22.000 2081805 97993 2079078 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900026705.1 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 48.0827 https://www.ncbi.nlm.nih.gov/nuccore/FEMC00000000.1 2014-07-16T11:40:11Z GCA_900026705.1 haploid public 2111306_II-sc-1870466 88.46 0.31 47 2018-03-10T19:06:32 GCA_053203845.1 822071 46 12754_4#4 2111306_II-sc-1870466 Netherlands 12754_4#4 SAMEA2383214 1313 GCF_900026705.1 Generic.1.0 88.46 SRA GCF_900026705.1 category_na live 2018-03-09T10:42:30Z 2842STDY5753761 PRJEB4909 GCF_900026705.1-RS_2026_01_11 SC SC 35 1870466 2018-03-09T10:42:30Z 2014-07-16T00:00:00.000 2111306_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEMC01 2006/2012 2842STDY5753761 2014-07-16T11:40:11Z Prokka current 35 2111306_II-sc-1870466 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEMC01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753761 species_match 98.86 SAMEA2383214 6 Streptococcus pneumoniae 93.36 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 109243 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1935 Streptococcus pneumoniae Streptococcus pneumoniae ERS409539 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:39.786 99.01 2079079 93.36 1313 2158 2024-02-06T06:52:22.000 2081805 97993 2079078 blood Homo sapiens Streptococcus pneumoniae Disease 171 EBI 100 GCA_053203845.1 GCF_900026705.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900026705.1 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 48.0827 https://www.ncbi.nlm.nih.gov/nuccore/FEMC00000000.1 2014-07-16T11:40:11Z GCF_900026705.1 haploid public 2111306_II-sc-1870466 88.46 0.31 47 2018-03-10T19:06:32 GCA_053203845.1 822071 52 12754_4#4 2111306_II-sc-1870466 Netherlands 12754_4#4 SAMEA2383214 1313 GCA_900026705.1 Generic.1.0 88.46 SRA GCA_900026705.1 category_na live 2018-03-09T10:42:30Z 2842STDY5753761 PRJEB4909 Annotation submitted by SC SC SC 35 1870466 2018-03-09T10:42:30Z 2014-07-16T00:00:00.000 2111306_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEMC01 2006/2012 2842STDY5753761 6.10 2014-07-16T11:40:11Z Prokka current 35 2111306_II-sc-1870466 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEMC01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753761 species_match 98.86 SAMEA2383139 6 Streptococcus pneumoniae 93.39 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 122425 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2012 Streptococcus pneumoniae Streptococcus pneumoniae ERS409464 SC 2006/2012 v1.2.4 2014-07-17T08:09:34.983 98.9 2063113 93.39 1313 2060 2024-02-06T06:51:42.000 2065278 97318 2063113 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900024225.1 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 40.644 https://www.ncbi.nlm.nih.gov/nuccore/FEJF00000000.1 2014-07-16T11:40:12Z GCA_900024225.1 haploid public 2103279_II-sc-1870390 87.81 0.31 41 2018-03-10T19:06:28 GCA_053203845.1 818123 48 12754_3#24 2103279_II-sc-1870390 Netherlands 12754_3#24 SAMEA2383139 1313 GCF_900024225.1 Generic.1.0 87.81 SRA GCF_900024225.1 category_na live 2018-03-09T10:42:25Z 2842STDY5753685 PRJEB4909 GCF_900024225.1-RS_2025_09_28 SC SC 32 1870390 2018-03-09T10:42:25Z 2014-07-16T00:00:00.000 2103279_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEJF01 2006/2012 2842STDY5753685 2014-07-16T11:40:12Z Prokka current 32 2103279_II-sc-1870390 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEJF01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5753685 species_match 98.86 SAMEA2383139 6 Streptococcus pneumoniae 93.39 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 122425 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-28 species Homo sapiens 1900 Streptococcus pneumoniae Streptococcus pneumoniae ERS409464 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:34.983 98.9 2063113 93.39 1313 2116 2024-02-06T06:51:42.000 2065278 97318 2063113 blood Homo sapiens Streptococcus pneumoniae Disease 161 EBI 100 GCA_053203845.1 GCF_900024225.1-RS_2025_09_28 SLX Streptococcus pneumoniae GCF_900024225.1 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 40.644 https://www.ncbi.nlm.nih.gov/nuccore/FEJF00000000.1 2014-07-16T11:40:12Z GCF_900024225.1 haploid public 2103279_II-sc-1870390 87.81 0.31 41 2018-03-10T19:06:28 GCA_053203845.1 818123 55 12754_3#24 2103279_II-sc-1870390 Netherlands 12754_3#24 SAMEA2383139 1313 GCA_900024225.1 Generic.1.0 87.81 SRA GCA_900024225.1 category_na live 2018-03-09T10:42:25Z 2842STDY5753685 PRJEB4909 Annotation submitted by SC SC SC 32 1870390 2018-03-09T10:42:25Z 2014-07-16T00:00:00.000 2103279_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FEJF01 2006/2012 2842STDY5753685 6.10 2014-07-16T11:40:12Z Prokka current 32 2103279_II-sc-1870390 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FEJF01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5753685 species_match 98.86 SAMEA2382904 5 Streptococcus pneumoniae 94.5 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 136821 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2002 Streptococcus pneumoniae Streptococcus pneumoniae ERS409229 SC 2006/2012 v1.2.4 2014-07-10T08:06:51.040 99.47 2045494 94.5 1313 2049 2024-02-06T07:00:56.000 2048890 96292 2045491 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900024775.1 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FDKZ00000000.1 2014-07-09T17:25:44Z GCA_900024775.1 haploid public 2071087_II-sc-1870152 88.09 0.31 35 2015-08-10T19:43:40 GCA_053203845.1 809004 47 12718_5#74 2071087_II-sc-1870152 Netherlands 12718_5#74 SAMEA2382904 1313 GCF_900024775.1 Generic.1.0 88.09 SRA GCF_900024775.1 category_na live 2018-03-09T10:43:45Z 2842STDY5753447 PRJEB4909 GCF_900024775.1-RS_2026_01_11 SC SC 22 1870152 2018-03-09T10:43:45Z 2014-07-09T00:00:00.000 2071087_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDKZ01 2006/2012 2842STDY5753447 2014-07-09T17:25:44Z Prokka current 22 2071087_II-sc-1870152 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDKZ01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753447 species_match 98.86 SAMEA2382904 5 Streptococcus pneumoniae 94.5 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 136821 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-11 species Homo sapiens 1884 Streptococcus pneumoniae Streptococcus pneumoniae ERS409229 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-10T08:06:51.040 99.47 2045494 94.5 1313 2096 2024-02-06T07:00:56.000 2048890 96292 2045491 blood Homo sapiens Streptococcus pneumoniae Disease 160 EBI 100 GCA_053203845.1 GCF_900024775.1-RS_2026_01_11 SLX Streptococcus pneumoniae GCF_900024775.1 type blood 98.86 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FDKZ00000000.1 2014-07-09T17:25:44Z GCF_900024775.1 haploid public 2071087_II-sc-1870152 88.09 0.31 35 2015-08-10T19:43:40 GCA_053203845.1 809004 52 12718_5#74 2071087_II-sc-1870152 Netherlands 12718_5#74 SAMEA2382904 1313 GCA_900024775.1 Generic.1.0 88.09 SRA GCA_900024775.1 category_na live 2018-03-09T10:43:45Z 2842STDY5753447 PRJEB4909 Annotation submitted by SC SC SC 22 1870152 2018-03-09T10:43:45Z 2014-07-09T00:00:00.000 2071087_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDKZ01 2006/2012 2842STDY5753447 6.10 2014-07-09T17:25:44Z Prokka current 22 2071087_II-sc-1870152 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDKZ01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753447 species_match 98.86 SAMEA2382687 4 Streptococcus pneumoniae 94.19 Streptococcus pneumoniae 1313 PRJEB4909 7 current na 185484 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2063 Streptococcus pneumoniae Streptococcus pneumoniae ERS409012 SC 2006/2012 v1.2.4 2014-07-03T08:07:07.150 99.47 2090354 94.19 1313 2109 2024-02-06T06:47:41.000 2093819 95918 2090352 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900032885.1 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FDCY00000000.1 2014-07-02T15:07:58Z GCA_900032885.1 haploid public 2000188_II-sc-1869933 89.73 0.31 36 2015-08-10T19:42:15 GCA_053203845.1 826669 46 12673_7#47 2000188_II-sc-1869933 Netherlands 12673_7#47 SAMEA2382687 1313 GCF_900032885.1 Generic.1.0 89.73 SRA GCF_900032885.1 category_na live 2018-03-09T10:41:42Z 2842STDY5753228 PRJEB4909 GCF_900032885.1-RS_2025_12_21 SC SC 22 1869933 2018-03-09T10:41:42Z 2014-07-02T00:00:00.000 2000188_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDCY01 2006/2012 2842STDY5753228 2014-07-02T15:07:58Z Prokka current 22 2000188_II-sc-1869933 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDCY01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753228 species_match 98.84 SAMEA2382687 4 Streptococcus pneumoniae 94.19 Streptococcus pneumoniae 1313 PRJEB4909 7 current na Best-placed reference protein set; GeneMarkS-2+ 185484 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-21 species Homo sapiens 1952 Streptococcus pneumoniae Streptococcus pneumoniae ERS409012 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-03T08:07:07.150 99.47 2090354 94.19 1313 2171 2024-02-06T06:47:41.000 2093819 95918 2090352 blood Homo sapiens Streptococcus pneumoniae Disease 167 EBI 100 GCA_053203845.1 GCF_900032885.1-RS_2025_12_21 SLX Streptococcus pneumoniae GCF_900032885.1 type blood 98.84 ERC000011 OK 39.5 Streptococcus pneumoniae 94.8403 https://www.ncbi.nlm.nih.gov/nuccore/FDCY00000000.1 2014-07-02T15:07:58Z GCF_900032885.1 haploid public 2000188_II-sc-1869933 89.73 0.31 36 2015-08-10T19:42:15 GCA_053203845.1 826669 52 12673_7#47 2000188_II-sc-1869933 Netherlands 12673_7#47 SAMEA2382687 1313 GCA_900032885.1 Generic.1.0 89.73 SRA GCA_900032885.1 category_na live 2018-03-09T10:41:42Z 2842STDY5753228 PRJEB4909 Annotation submitted by SC SC SC 22 1869933 2018-03-09T10:41:42Z 2014-07-02T00:00:00.000 2000188_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDCY01 2006/2012 2842STDY5753228 6.10 2014-07-02T15:07:58Z Prokka current 22 2000188_II-sc-1869933 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDCY01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753228 species_match 98.84 SAMEA2203799 4 Streptococcus pneumoniae 93.46 Streptococcus pneumoniae 1313 PRJEB3084 6 current na 158894 type Streptococcus pneumoniae 2019-05-14 9V 9V species Homo sapiens 2068 Streptococcus pneumoniae Streptococcus pneumoniae ERS356303 SC 2009 v1.2.4 2014-02-28T18:05:43.956 98.72 2082896 93.46 1313 2115 Streptococcus pneumoniae 2024-02-06T15:54:47.000 2085064 102882 2082896 blood Homo sapiens Streptococcus pneumoniae Pneumonia ST156 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900039645.2 type blood 98.69 ERC000011 OK 39.5 Streptococcus pneumoniae 27.7191 https://www.ncbi.nlm.nih.gov/nuccore/FFRS00000000.2 2014-02-18T09:20:00Z GCA_900039645.2 haploid public 2009218384-sc-2013-10-09T11:49:38Z-1712388 88.71 0.62 39 2015-08-10T19:05:34 GCA_053203845.1 824792 47 11679_1#12 2009218384-sc-2013-10-09T11:49:38Z-1712388 USA 11679_1#12 SAMEA2203799 1313 GCF_900039645.2 Generic.1.0 88.71 SRA GCF_900039645.2 category_na live 2019-04-18T15:39:18Z GPSC6 PRJEB3084 GCF_900039645.2-RS_2026_01_01 SC SC 29 1712388 2019-04-18T15:39:18Z 2014-02-18T00:00:00.000 2009218384 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFRS02 2009 2245STDY5608938 2014-02-18T09:20:00Z Prokka current 29 2009218384-sc-2013-10-09T11:49:38Z-1712388 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFRS02 Scaffold SOURCE_DATABASE_GENBANK 1313 USA 2019-05-14 GPSC6 species_match 98.69 SAMEA2203799 4 Streptococcus pneumoniae 93.46 Streptococcus pneumoniae 1313 PRJEB3084 6 current na Best-placed reference protein set; GeneMarkS-2+ 158894 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-01 9V 9V species Homo sapiens 1949 Streptococcus pneumoniae Streptococcus pneumoniae ERS356303 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009 v1.2.4 2014-02-28T18:05:43.956 98.72 2082896 93.46 1313 2177 Streptococcus pneumoniae 2024-02-06T15:54:47.000 2085064 102882 2082896 blood Homo sapiens Streptococcus pneumoniae Pneumonia 174 ST156 EBI 100 GCA_053203845.1 GCF_900039645.2-RS_2026_01_01 SLX Streptococcus pneumoniae GCF_900039645.2 type blood 98.69 ERC000011 OK 39.5 Streptococcus pneumoniae 27.7191 https://www.ncbi.nlm.nih.gov/nuccore/FFRS00000000.2 2014-02-18T09:20:00Z GCF_900039645.2 haploid public 2009218384-sc-2013-10-09T11:49:38Z-1712388 88.71 0.62 39 2015-08-10T19:05:34 GCA_053203845.1 824792 54 11679_1#12 2009218384-sc-2013-10-09T11:49:38Z-1712388 USA 11679_1#12 SAMEA2203799 1313 GCA_900039645.2 Generic.1.0 88.71 SRA GCA_900039645.2 category_na live 2019-04-18T15:39:18Z GPSC6 PRJEB3084 Annotation submitted by SC SC SC 29 1712388 2019-04-18T15:39:18Z 2014-02-18T00:00:00.000 2009218384 https://www.ncbi.nlm.nih.gov/Traces/wgs/FFRS02 2009 GPSC6 substr. ST156 6.10 2014-02-18T09:20:00Z Prokka current 29 2009218384-sc-2013-10-09T11:49:38Z-1712388 Generic Global_Pneumococcal_Sequencing__GPS__study_I FFRS02 Scaffold SOURCE_DATABASE_REFSEQ 1313 USA 2019-05-14 GPSC6 species_match 98.69 SAMEA2238797 5 Streptococcus pneumoniae 93.8 Streptococcus pneumoniae 1313 PRJEB4909 8 current na 122598 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2068 Streptococcus pneumoniae Streptococcus pneumoniae ERS367609 SC 2006/2012 v1.2.4 2014-05-07T08:34:58.130 98.94 2082625 93.8 1313 2115 2024-02-06T05:04:55.000 2085211 87306 2082625 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900022325.1 type CSF 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FCTM00000000.1 2014-03-18T09:35:29Z GCA_900022325.1 haploid public 2102632-sc-2013-11-05T12:02:36Z-1750160 89.02 0.71 42 2018-03-10T18:56:43 GCA_053203845.1 824162 47 11893_1#40 2102632-sc-2013-11-05T12:02:36Z-1750160 Netherlands 11893_1#40 SAMEA2238797 1313 GCF_900022325.1 Generic.1.0 89.02 SRA GCF_900022325.1 category_na live 2018-03-09T10:27:44Z 2842STDY5644171 PRJEB4909 GCF_900022325.1-RS_2026_01_25 SC SC 30 1750160 2018-03-09T10:27:44Z 2014-03-18T00:00:00.000 2102632 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCTM01 2006/2012 2842STDY5644171 2014-03-18T09:35:29Z Prokka current 30 2102632-sc-2013-11-05T12:02:36Z-1750160 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCTM01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5644171 species_match 98.78 SAMEA2238797 5 Streptococcus pneumoniae 93.8 Streptococcus pneumoniae 1313 PRJEB4909 8 current na Best-placed reference protein set; GeneMarkS-2+ 122598 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-25 species Homo sapiens 1951 Streptococcus pneumoniae Streptococcus pneumoniae ERS367609 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:58.130 98.94 2082625 93.8 1313 2172 2024-02-06T05:04:55.000 2085211 87306 2082625 CSF Homo sapiens Streptococcus pneumoniae Disease 167 EBI 100 GCA_053203845.1 GCF_900022325.1-RS_2026_01_25 SLX Streptococcus pneumoniae GCF_900022325.1 type CSF 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 42.8974 https://www.ncbi.nlm.nih.gov/nuccore/FCTM00000000.1 2014-03-18T09:35:29Z GCF_900022325.1 haploid public 2102632-sc-2013-11-05T12:02:36Z-1750160 89.02 0.71 42 2018-03-10T18:56:43 GCA_053203845.1 824162 54 11893_1#40 2102632-sc-2013-11-05T12:02:36Z-1750160 Netherlands 11893_1#40 SAMEA2238797 1313 GCA_900022325.1 Generic.1.0 89.02 SRA GCA_900022325.1 category_na live 2018-03-09T10:27:44Z 2842STDY5644171 PRJEB4909 Annotation submitted by SC SC SC 30 1750160 2018-03-09T10:27:44Z 2014-03-18T00:00:00.000 2102632 https://www.ncbi.nlm.nih.gov/Traces/wgs/FCTM01 2006/2012 2842STDY5644171 6.10 2014-03-18T09:35:29Z Prokka current 30 2102632-sc-2013-11-05T12:02:36Z-1750160 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FCTM01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5644171 species_match 98.78 SAMEA2382938 6 Streptococcus pneumoniae 91.66 Streptococcus pneumoniae 1313 PRJEB4909 9 current na 114712 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2155 Streptococcus pneumoniae Streptococcus pneumoniae ERS409263 SC 2006/2012 v1.2.4 2014-07-17T08:09:24.340 98.61 2139624 91.66 1313 2198 2024-02-06T09:23:30.000 2143323 83960 2139623 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900020945.1 type blood 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 22.617 https://www.ncbi.nlm.nih.gov/nuccore/FDMF00000000.1 2014-07-16T11:40:12Z GCA_900020945.1 haploid public 2080058_II-sc-1870187 89.37 0.31 91 2018-03-10T19:06:18 GCA_053203845.1 847274 43 12754_1#13 2080058_II-sc-1870187 Netherlands 12754_1#13 SAMEA2382938 1313 GCF_900020945.1 Generic.1.0 89.37 SRA GCF_900020945.1 category_na live 2018-03-09T13:35:54Z 2842STDY5753482 PRJEB4909 GCF_900020945.1-RS_2025_09_21 SC SC 78 1870187 2018-03-09T13:35:54Z 2014-07-16T00:00:00.000 2080058_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDMF01 2006/2012 2842STDY5753482 2014-07-16T11:40:12Z Prokka current 78 2080058_II-sc-1870187 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDMF01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753482 species_match 98.78 SAMEA2382938 6 Streptococcus pneumoniae 91.66 Streptococcus pneumoniae 1313 PRJEB4909 9 current na Best-placed reference protein set; GeneMarkS-2+ 114712 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 2039 Streptococcus pneumoniae Streptococcus pneumoniae ERS409263 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-17T08:09:24.340 98.61 2139624 91.66 1313 2280 2024-02-06T09:23:30.000 2143323 83960 2139623 blood Homo sapiens Streptococcus pneumoniae Disease 190 EBI 100 GCA_053203845.1 GCF_900020945.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900020945.1 type blood 98.78 ERC000011 OK 39.5 Streptococcus pneumoniae 22.617 https://www.ncbi.nlm.nih.gov/nuccore/FDMF00000000.1 2014-07-16T11:40:12Z GCF_900020945.1 haploid public 2080058_II-sc-1870187 89.37 0.31 91 2018-03-10T19:06:18 GCA_053203845.1 847274 51 12754_1#13 2080058_II-sc-1870187 Netherlands 12754_1#13 SAMEA2382938 1313 GCA_900020945.1 Generic.1.0 89.37 SRA GCA_900020945.1 category_na live 2018-03-09T13:35:54Z 2842STDY5753482 PRJEB4909 Annotation submitted by SC SC SC 78 1870187 2018-03-09T13:35:54Z 2014-07-16T00:00:00.000 2080058_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDMF01 2006/2012 2842STDY5753482 6.10 2014-07-16T11:40:12Z Prokka current 78 2080058_II-sc-1870187 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDMF01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753482 species_match 98.78 SAMEA2382786 5 Streptococcus pneumoniae 91.7 Streptococcus pneumoniae 1313 PRJEB4909 9 current na 150950 type Streptococcus pneumoniae 2016-02-08 species Homo sapiens 2149 Streptococcus pneumoniae Streptococcus pneumoniae ERS409111 SC 2006/2012 v1.2.4 2014-07-10T08:06:45.640 98.75 2130877 91.7 1313 2197 2024-02-06T06:48:20.000 2133937 72078 2130874 blood Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900020895.1 type blood 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 29.4027 https://www.ncbi.nlm.nih.gov/nuccore/FDGS00000000.1 2014-07-09T17:25:44Z GCA_900020895.1 haploid public 2012157_II-sc-1870033 89.04 0.68 58 2015-08-10T19:43:35 GCA_053203845.1 843484 48 12718_4#51 2012157_II-sc-1870033 Netherlands 12718_4#51 SAMEA2382786 1313 GCF_900020895.1 Generic.1.0 89.04 SRA GCF_900020895.1 category_na live 2018-03-09T10:41:48Z 2842STDY5753328 PRJEB4909 GCF_900020895.1-RS_2025_12_21 SC SC 46 1870033 2018-03-09T10:41:48Z 2014-07-09T00:00:00.000 2012157_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDGS01 2006/2012 2842STDY5753328 2014-07-09T17:25:44Z Prokka current 46 2012157_II-sc-1870033 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDGS01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-08 2842STDY5753328 species_match 98.71 SAMEA2382786 5 Streptococcus pneumoniae 91.7 Streptococcus pneumoniae 1313 PRJEB4909 9 current na Best-placed reference protein set; GeneMarkS-2+ 150950 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-21 species Homo sapiens 2027 Streptococcus pneumoniae Streptococcus pneumoniae ERS409111 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-07-10T08:06:45.640 98.75 2130877 91.7 1313 2264 2024-02-06T06:48:20.000 2133937 72078 2130874 blood Homo sapiens Streptococcus pneumoniae Disease 181 EBI 100 GCA_053203845.1 GCF_900020895.1-RS_2025_12_21 SLX Streptococcus pneumoniae GCF_900020895.1 type blood 98.71 ERC000011 OK 39.5 Streptococcus pneumoniae 29.4027 https://www.ncbi.nlm.nih.gov/nuccore/FDGS00000000.1 2014-07-09T17:25:44Z GCF_900020895.1 haploid public 2012157_II-sc-1870033 89.04 0.68 58 2015-08-10T19:43:35 GCA_053203845.1 843484 56 12718_4#51 2012157_II-sc-1870033 Netherlands 12718_4#51 SAMEA2382786 1313 GCA_900020895.1 Generic.1.0 89.04 SRA GCA_900020895.1 category_na live 2018-03-09T10:41:48Z 2842STDY5753328 PRJEB4909 Annotation submitted by SC SC SC 46 1870033 2018-03-09T10:41:48Z 2014-07-09T00:00:00.000 2012157_II https://www.ncbi.nlm.nih.gov/Traces/wgs/FDGS01 2006/2012 2842STDY5753328 6.10 2014-07-09T17:25:44Z Prokka current 46 2012157_II-sc-1870033 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDGS01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-08 2842STDY5753328 species_match 98.71 SAMEA2239153 6 Streptococcus pneumoniae 91.87 Streptococcus pneumoniae 1313 PRJEB4909 9 current na 137471 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2139 Streptococcus pneumoniae Streptococcus pneumoniae ERS367965 SC 2006/2012 v1.2.4 2014-05-07T08:35:24.113 98.84 2130266 91.87 1313 2185 2024-02-06T05:04:33.000 2134741 68730 2130266 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900046515.1 type CSF 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FDQN00000000.1 2014-03-18T09:35:30Z GCA_900046515.1 haploid public 2001006-sc-2013-11-05T12:08:50Z-1750524 89.19 0.62 58 2015-08-10T19:24:45 GCA_053203845.1 843240 46 11860_8#19 2001006-sc-2013-11-05T12:08:50Z-1750524 Netherlands 11860_8#19 SAMEA2239153 1313 GCF_900046515.1 Generic.1.0 89.19 SRA GCF_900046515.1 category_na live 2018-03-09T10:27:42Z 2842STDY5644535 PRJEB4909 GCF_900046515.1-RS_2025_09_21 SC SC 39 1750524 2018-03-09T10:27:42Z 2014-03-18T00:00:00.000 2001006 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDQN01 2006/2012 2842STDY5644535 2014-03-18T09:35:30Z Prokka current 39 2001006-sc-2013-11-05T12:08:50Z-1750524 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDQN01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5644535 species_match 98.72 SAMEA2239153 6 Streptococcus pneumoniae 91.87 Streptococcus pneumoniae 1313 PRJEB4909 9 current na Best-placed reference protein set; GeneMarkS-2+ 137471 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-21 species Homo sapiens 2018 Streptococcus pneumoniae Streptococcus pneumoniae ERS367965 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:35:24.113 98.84 2130266 91.87 1313 2253 2024-02-06T05:04:33.000 2134741 68730 2130266 CSF Homo sapiens Streptococcus pneumoniae Disease 182 EBI 100 GCA_053203845.1 GCF_900046515.1-RS_2025_09_21 SLX Streptococcus pneumoniae GCF_900046515.1 type CSF 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/FDQN00000000.1 2014-03-18T09:35:30Z GCF_900046515.1 haploid public 2001006-sc-2013-11-05T12:08:50Z-1750524 89.19 0.62 58 2015-08-10T19:24:45 GCA_053203845.1 843240 53 11860_8#19 2001006-sc-2013-11-05T12:08:50Z-1750524 Netherlands 11860_8#19 SAMEA2239153 1313 GCA_900046515.1 Generic.1.0 89.19 SRA GCA_900046515.1 category_na live 2018-03-09T10:27:42Z 2842STDY5644535 PRJEB4909 Annotation submitted by SC SC SC 39 1750524 2018-03-09T10:27:42Z 2014-03-18T00:00:00.000 2001006 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDQN01 2006/2012 2842STDY5644535 6.10 2014-03-18T09:35:30Z Prokka current 39 2001006-sc-2013-11-05T12:08:50Z-1750524 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDQN01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5644535 species_match 98.72 SAMEA2238393 8 Streptococcus pneumoniae 91.93 Streptococcus pneumoniae 1313 PRJEB4909 11 current na 97357 type Streptococcus pneumoniae 2016-02-10 species Homo sapiens 2123 Streptococcus pneumoniae Streptococcus pneumoniae ERS367205 SC 2006/2012 v1.2.4 2014-05-07T08:34:23.586 98.48 2124216 91.93 1313 2168 2024-02-06T05:19:27.000 2128006 60927 2124208 CSF Homo sapiens Streptococcus pneumoniae Disease EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_900022205.1 type CSF 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae 17.8798 https://www.ncbi.nlm.nih.gov/nuccore/FDYB00000000.1 2014-03-18T09:35:30Z GCA_900022205.1 haploid public 2070673-sc-2013-11-05T11:55:41Z-1749752 88.99 0.62 90 2015-08-10T19:24:11 GCA_053203845.1 840295 45 11860_5#24 2070673-sc-2013-11-05T11:55:41Z-1749752 Netherlands 11860_5#24 SAMEA2238393 1313 GCF_900022205.1 Generic.1.0 88.99 SRA GCF_900022205.1 category_na live 2018-03-09T10:29:24Z 2842STDY5643763 PRJEB4909 GCF_900022205.1-RS_2025_12_21 SC SC 75 1749752 2018-03-09T10:29:24Z 2014-03-18T00:00:00.000 2070673 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDYB01 2006/2012 2842STDY5643763 2014-03-18T09:35:30Z Prokka current 75 2070673-sc-2013-11-05T11:55:41Z-1749752 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDYB01 Scaffold SOURCE_DATABASE_GENBANK Netherlands 2016-02-10 2842STDY5643763 species_match 98.72 SAMEA2238393 8 Streptococcus pneumoniae 91.93 Streptococcus pneumoniae 1313 PRJEB4909 11 current na Best-placed reference protein set; GeneMarkS-2+ 97357 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-12-21 species Homo sapiens 2026 Streptococcus pneumoniae Streptococcus pneumoniae ERS367205 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2006/2012 v1.2.4 2014-05-07T08:34:23.586 98.48 2124216 91.93 1313 2274 2024-02-06T05:19:27.000 2128006 60927 2124208 CSF Homo sapiens Streptococcus pneumoniae Disease 196 EBI 100 GCA_053203845.1 GCF_900022205.1-RS_2025_12_21 SLX Streptococcus pneumoniae GCF_900022205.1 type CSF 98.72 ERC000011 OK 39.5 Streptococcus pneumoniae 17.8798 https://www.ncbi.nlm.nih.gov/nuccore/FDYB00000000.1 2014-03-18T09:35:30Z GCF_900022205.1 haploid public 2070673-sc-2013-11-05T11:55:41Z-1749752 88.99 0.62 90 2015-08-10T19:24:11 GCA_053203845.1 840295 52 11860_5#24 2070673-sc-2013-11-05T11:55:41Z-1749752 Netherlands 11860_5#24 SAMEA2238393 1313 GCA_900022205.1 Generic.1.0 88.99 SRA GCA_900022205.1 category_na live 2018-03-09T10:29:24Z 2842STDY5643763 PRJEB4909 Annotation submitted by SC SC SC 75 1749752 2018-03-09T10:29:24Z 2014-03-18T00:00:00.000 2070673 https://www.ncbi.nlm.nih.gov/Traces/wgs/FDYB01 2006/2012 2842STDY5643763 6.10 2014-03-18T09:35:30Z Prokka current 75 2070673-sc-2013-11-05T11:55:41Z-1749752 Generic Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis FDYB01 Scaffold SOURCE_DATABASE_REFSEQ Netherlands 2016-02-10 2842STDY5643763 species_match 98.72 SAMEA1025588 15 Streptococcus pneumoniae 88.92 Streptococcus pneumoniae 1313 PRJEB2395 15 current na 58843 type Streptococcus pneumoniae 2015-07-18 9V 9V species Homo sapiens 2158 Streptococcus pneumoniae Streptococcus pneumoniae ERS020684 SC 2009-01-17 v1.2.4 2012-01-20T19:55:24.150 99.2 2172913 88.92 1313 2199 2024-02-06T09:03:50.000 2172913 58843 2172895 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001207735.1 type nasopharynx 98.79 OK 39.5 Streptococcus pneumoniae 69.3105 https://www.ncbi.nlm.nih.gov/nuccore/CROI00000000.1 2011-11-15T17:01:01Z GCA_001207735.1 haploid public SMRU1174-sc-2011-01-27-1061387 88.05 0.94 70 2015-07-28T08:11:29 GCA_053203845.1 857990 41 6755_5#22 SMRU1174-sc-2011-01-27-1061387 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025588 1313 GCF_001207735.1 Generic.1.0 88.05 SRA GCF_001207735.1 category_na live 2018-03-09T12:03:08Z SMRU1174 PRJEB2395 GCF_001207735.1-RS_2026_02_05 SC SC 70 2018-03-09T12:03:08Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CROI01 2009-01-17 SMRU1174 2011-11-15T17:01:01Z Prokka current 70 SMRU1174-sc-2011-01-27-1061387 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CROI01 Contig SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-18 SMRU1174 species_match 98.79 SAMEA1025588 15 Streptococcus pneumoniae 88.92 Streptococcus pneumoniae 1313 PRJEB2395 15 current na Best-placed reference protein set; GeneMarkS-2+ 58843 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-02-05 9V 9V species Homo sapiens 2058 Streptococcus pneumoniae Streptococcus pneumoniae ERS020684 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2009-01-17 v1.2.4 2012-01-20T19:55:24.150 99.2 2172913 88.92 1313 2283 2024-02-06T09:03:50.000 2172913 58843 2172895 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 180 EBI 100 GCA_053203845.1 GCF_001207735.1-RS_2026_02_05 SLX Streptococcus pneumoniae GCF_001207735.1 type nasopharynx 98.79 OK 39.5 Streptococcus pneumoniae 69.3105 https://www.ncbi.nlm.nih.gov/nuccore/CROI00000000.1 2011-11-15T17:01:01Z GCF_001207735.1 haploid public SMRU1174-sc-2011-01-27-1061387 88.05 0.94 70 2015-07-28T08:11:29 GCA_053203845.1 857990 45 6755_5#22 SMRU1174-sc-2011-01-27-1061387 Thailand: Maela Streptococcus pneumoniae; Streptococcus pneumoniae SAMEA1025588 1313 GCA_001207735.1 Generic.1.0 88.05 SRA GCA_001207735.1 category_na live 2018-03-09T12:03:08Z SMRU1174 PRJEB2395 Annotation submitted by SC SC SC 70 2018-03-09T12:03:08Z 2011-11-15T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CROI01 2009-01-17 SMRU1174 6.10 2011-11-15T17:01:01Z Prokka current 70 SMRU1174-sc-2011-01-27-1061387 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CROI01 Contig SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-18 SMRU1174 species_match 98.79 SAMEA1023961 12 Streptococcus pneumoniae 89.2 Streptococcus pneumoniae 1313 PRJEB2357 13 current na 58805 type Streptococcus pneumoniae 2015-07-11 9V 9V species Homo sapiens 2101 Streptococcus pneumoniae Streptococcus pneumoniae ERS019601 SC 2008-06-09 v1.2.4 2012-01-20T19:45:59.830 99.04 2142047 89.2 1313 2139 2024-02-06T09:03:49.000 2142080 52443 2142031 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_001122825.1 type nasopharynx 98.81 OK 39.5 Streptococcus pneumoniae 49.4655 https://www.ncbi.nlm.nih.gov/nuccore/CKIN00000000.1 2011-10-11T09:20:06Z GCA_001122825.1 haploid public SMRU443-sc-2011-01-27-1060632 87.07 2.25 86 2016-01-29T08:05:23 GCA_053203845.1 848856 38 6631_4#11 SMRU443-sc-2011-01-27-1060632 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023961 1313 GCF_001122825.1 Generic.1.0 87.07 SRA GCF_001122825.1 category_na live 2018-03-09T12:02:57Z SMRU443 PRJEB2357 GCF_001122825.1-RS_2026_01_23 SC SC 83 2018-03-09T12:02:57Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKIN01 2008-06-09 9V 2011-10-11T09:20:06Z Prokka current 83 SMRU443-sc-2011-01-27-1060632 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKIN01 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2015-07-11 SMRU443 species_match 98.81 SAMEA1023961 12 Streptococcus pneumoniae 89.2 Streptococcus pneumoniae 1313 PRJEB2357 13 current na Best-placed reference protein set; GeneMarkS-2+ 58805 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2026-01-23 9V 9V species Homo sapiens 2020 Streptococcus pneumoniae Streptococcus pneumoniae ERS019601 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-06-09 v1.2.4 2012-01-20T19:45:59.830 99.04 2142047 89.2 1313 2234 2024-02-06T09:03:49.000 2142080 52443 2142031 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 173 EBI 100 GCA_053203845.1 GCF_001122825.1-RS_2026_01_23 SLX Streptococcus pneumoniae GCF_001122825.1 type nasopharynx 98.81 OK 39.5 Streptococcus pneumoniae 49.4655 https://www.ncbi.nlm.nih.gov/nuccore/CKIN00000000.1 2011-10-11T09:20:06Z GCF_001122825.1 haploid public SMRU443-sc-2011-01-27-1060632 87.07 2.25 86 2016-01-29T08:05:23 GCA_053203845.1 848856 41 6631_4#11 SMRU443-sc-2011-01-27-1060632 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023961 1313 GCA_001122825.1 Generic.1.0 87.07 SRA GCA_001122825.1 category_na live 2018-03-09T12:02:57Z SMRU443 PRJEB2357 Annotation submitted by SC SC SC 83 2018-03-09T12:02:57Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKIN01 2008-06-09 SMRU443 6.10 2011-10-11T09:20:06Z Prokka current 83 SMRU443-sc-2011-01-27-1060632 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKIN01 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2015-07-11 SMRU443 species_match 98.81 SAMEA1023845 12 Streptococcus pneumoniae 92.41 Streptococcus pneumoniae 1313 PRJEB2357 13 current na 53532 type Streptococcus pneumoniae 2021-05-21 9V 9V species Homo sapiens 2081 Streptococcus pneumoniae Streptococcus pneumoniae ERS019489 Wellcome Sanger Institute 2008-04-30 v1.2.4 2012-01-20T19:44:44.100 98.84 2099161 92.41 1313 2125 2024-02-05T21:31:57.000 2099323 51635 2099151 nasopharynx Homo sapiens Streptococcus pneumoniae carriage EBI 100 GCA_053203845.1 Annotation submitted by Wellcome Sanger Institute SLX Streptococcus pneumoniae GCA_001173805.2 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/CKGT00000000.2 2011-10-11T09:20:05Z GCA_001173805.2 haploid public SMRU331-sc-2011-01-27-1060520 88.4 0.71 71 2016-01-29T08:05:20 GCA_053203845.1 831754 44 6631_1#19 SMRU331-sc-2011-01-27-1060520 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023845 1313 GCF_001173805.2 Generic.1.0 88.4 SRA GCF_001173805.2 category_na live 2018-03-09T09:59:28Z SMRU331 PRJEB2357 GCF_001173805.2-RS_2025_09_22 Wellcome Sanger Institute SC 70 2018-03-09T09:59:28Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKGT02 2008-04-30 SMRU331 2011-10-11T09:20:05Z Prokka current 70 SMRU331-sc-2011-01-27-1060520 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKGT02 Scaffold SOURCE_DATABASE_GENBANK Thailand: Maela 2021-05-21 SMRU331 species_match 98.75 SAMEA1023845 12 Streptococcus pneumoniae 92.41 Streptococcus pneumoniae 1313 PRJEB2357 13 current na Best-placed reference protein set; GeneMarkS-2+ 53532 The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ type Streptococcus pneumoniae 2025-09-22 9V 9V species Homo sapiens 1994 Streptococcus pneumoniae Streptococcus pneumoniae ERS019489 NCBI Prokaryotic Genome Annotation Pipeline (PGAP) NCBI RefSeq 2008-04-30 v1.2.4 2012-01-20T19:44:44.100 98.84 2099161 92.41 1313 2221 2024-02-05T21:31:57.000 2099323 51635 2099151 nasopharynx Homo sapiens Streptococcus pneumoniae carriage 178 EBI 100 GCA_053203845.1 GCF_001173805.2-RS_2025_09_22 SLX Streptococcus pneumoniae GCF_001173805.2 type nasopharynx 98.75 OK 39.5 Streptococcus pneumoniae 35.4779 https://www.ncbi.nlm.nih.gov/nuccore/CKGT00000000.2 2011-10-11T09:20:05Z GCF_001173805.2 haploid public SMRU331-sc-2011-01-27-1060520 88.4 0.71 71 2016-01-29T08:05:20 GCA_053203845.1 831754 49 6631_1#19 SMRU331-sc-2011-01-27-1060520 Thailand: Maela Sample from Streptococcus pneumoniae SAMEA1023845 1313 GCA_001173805.2 Generic.1.0 88.4 SRA GCA_001173805.2 category_na live 2018-03-09T09:59:28Z SMRU331 PRJEB2357 Annotation submitted by Wellcome Sanger Institute Wellcome Sanger Institute SC 70 2018-03-09T09:59:28Z 2011-10-11T00:00:00.000 https://www.ncbi.nlm.nih.gov/Traces/wgs/CKGT02 2008-04-30 SMRU331 6.10 2011-10-11T09:20:05Z Prokka current 70 SMRU331-sc-2011-01-27-1060520 Generic Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population CKGT02 Scaffold SOURCE_DATABASE_REFSEQ Thailand: Maela 2021-05-21 SMRU331 species_match 98.75 SAMEA2796446 6 Streptococcus pneumoniae 93.48 Streptococcus pneumoniae PRJEB3084 7 na 117157 type Streptococcus pneumoniae 2019-05-15 9V 9V Homo sapiens 2063 Streptococcus pneumoniae Streptococcus pneumoniae ERS558057 SC 2003 2015-01-30T08:09:08.123 2081248 93.48 1313 2111 Streptococcus pneumoniae 2024-02-06T15:55:19.000 2083421 116823 2081247 blood Homo sapiens bacteremia from large multi-isolate project ST156 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901322055.1 type blood 98.7 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CABART000000000.1 2015-01-27T09:20:52Z GCA_901322055.1 haploid public GPS_US_6025_03-sc-2138425 88.66 45 2018-03-10T19:32:53 GCA_053203845.1 824244 48 14673_1#38 GPS_US_6025_03-sc-2138425 USA 14673_1#38 SAMEA2796446 1313 Generic.1.0 88.66 SRA category_na live 2019-04-18T15:39:26Z GPSC6 PRJEB3084 SC SC 36 2138425 2019-04-18T15:39:26Z 2015-01-27T00:00:00.000 6025_03 https://www.ncbi.nlm.nih.gov/Traces/wgs/CABART01 2003 GPSC6 substr. ST156 2015-01-27T09:20:52Z Prokka current 36 GPS_US_6025_03-sc-2138425 Generic Global_Pneumococcal_Sequencing__GPS__study_I CABART01 Scaffold SOURCE_DATABASE_GENBANK USA 2019-05-15 GPSC6 species_match 98.7 SAMEA2627447 6 Streptococcus pneumoniae 93.07 Streptococcus pneumoniae PRJEB3084 8 na 125302 type Streptococcus pneumoniae 2019-05-12 9V 9V Homo sapiens 2009 Streptococcus pneumoniae Streptococcus pneumoniae ERS497346 SC 2008 2015-01-29T08:36:53.166 2031434 93.07 1313 2050 Streptococcus pneumoniae 2024-02-06T15:53:27.000 2034423 95338 2031433 blood Homo sapiens IPD from large multi-isolate project ST11758 EBI 100 GCA_053203845.1 Annotation submitted by SC SLX Streptococcus pneumoniae GCA_901279125.1 type blood 98.77 ERC000011 OK 39.5 Streptococcus pneumoniae https://www.ncbi.nlm.nih.gov/nuccore/CAAUKK000000000.1 2015-01-08T09:39:42Z GCA_901279125.1 haploid public GPS_GM_0480-sc-2003385 86.16 44 2018-03-10T19:27:28 GCA_053203845.1 806802 41 14410_7#47 GPS_GM_0480-sc-2003385 Gambia 14410_7#47 SAMEA2627447 1313 Generic.1.0 86.16 SRA category_na live 2019-04-18T15:39:01Z GPSC43 PRJEB3084 SC SC 34 2003385 2019-04-18T15:39:01Z 2015-01-08T00:00:00.000 GPS_GM_0480 https://www.ncbi.nlm.nih.gov/Traces/wgs/CAAUKK01 2008 GPSC43 substr. ST11758 2015-01-08T09:39:42Z Prokka current 34 GPS_GM_0480-sc-2003385 Generic Global_Pneumococcal_Sequencing__GPS__study_I CAAUKK01 Scaffold SOURCE_DATABASE_GENBANK Gambia 2019-05-12 GPSC43 species_match 98.77